RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZXDC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034430

Ensembl transcript IDs: ENSMUST00000045740.8, ENSMUST00000075117.10, ENSMUST00000113539.8, ENSMUST00000203493.2

Found 281 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTTCTCTGTGGGGTaGGCTCTGGAGGCAGGCGACAGTGGTACCAGGCTGCCTACTGAG +
Preference number: 1 (lower is better)
Translates to: HAGGCGSCWSNFSVG*ALEAGDSGTRLPTE
Trigger: CTCAGTAGGCAGCCTGGTACCACTGTCGCCTGCCTCCAGAGCCCACCCCACAGAGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 90 bp GAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCTaGAGGCTGTGGGAGCTGCTGGAGCAACTTCTCTGTGGGGTGGGC +
Preference number: 1 (lower is better)
Translates to: ELRAQQPILSLADTR*RLWELLEQLLCGVG
Trigger: GCCCACCCCACAGAGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 90 bp GCAGGAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTaGAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTTCT +
Preference number: 1 (lower is better)
Translates to: AGSSRAQSTTAHPVT*RHTLEAVGAAGATS
Trigger: AGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 90 bp CAGGACTCACCAGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTaGAGAAGGGACAGCAGACGAGGCTATAGACTTAACTGCTCCACA +
Preference number: 1 (lower is better)
Translates to: QDSPVSSQYLHLHAM*RRDSRRGYRLNCST
Trigger: TGTGGAGCAGTTAAGTCTATAGCCTCGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACTGGTGAGTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CCA 90 bp GACCCTGTTTGGACCCTTGATTTCCCGAGGGCCTCTCAGACCTGTTaGGCATGTTCAGACATGCTGGTGATTTGGTTGCTACCTGTTTTC +
Preference number: 1 (lower is better)
Translates to: DPVWTLDFPRASQTC*ACSDMLVIWLLPVF
Trigger: GAAAACAGGTAGCAACCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGGCCCTCGGGAAATCAAGGGTCCAAACAGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 90 bp CAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTaGACACCAGAAAGAACCGTCTGCATAGACAGGATTCATCCCCAA +
Preference number: 1 (lower is better)
Translates to: QSQASRLLPRLHLSF*TPERTVCIDRIHPQ
Trigger: TTGGGGATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR CCA 90 bp AAAACACCACATCTTCTTGATGCCAGGGTTATGTCTCAGCAGCCCTaGGCAGTGTTGGCAGCAAGTGCCACACTGTCATCTGCCAATACA +
Preference number: 1 (lower is better)
Translates to: KTPHLLDARVMSQQP*AVLAASATLSSANT
Trigger: TGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCTGCTGAGACATAACCCTGGCATCAAGAAGATGTGGTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 90 bp AATGTCAATTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTaGCCAGGCTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCT +
Preference number: 1 (lower is better)
Translates to: NVNSRLKVKVRLPDY*PGSICPSAHQKEPS
Trigger: AGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAATTGACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR CCA 90 bp ATCTTCTTGATGCCAGGGTTATGTCTCAGCAGCCCTGGGCAGTGTTaGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTA +
Preference number: 1 (lower is better)
Translates to: IFLMPGLCLSSPGQC*QQVPHCHLPIQKVL
Trigger: TAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCTGCTGAGACATAACCCTGGCATCAAGAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CCA 90 bp TTTGCACATAACATTCGAACACTTTTATTCATTTGCACTAAGGACTaGGCCTATGGCAGCAGGAAGCTCCAGAGCTCAGAGCACAACAGC +
Preference number: 1 (lower is better)
Translates to: FAHNIRTLLFICTKD*AYGSRKLQSSEHNS
Trigger: GCTGTTGTGCTCTGAGCTCTGGAGCTTCCTGCTGCCATAGGCCCAGTCCTTAGTGCAAATGAATAAAAGTGTTCGAATGTTATGTGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 90 bp CAGAGGGCAACCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACTaGCTCTTGCTGGAACAGAATCAAAGTACTTTCAATATGTGTACC +
Preference number: 1 (lower is better)
Translates to: QRATCGGSFKEYSPN*LLLEQNQSTFNMCT
Trigger: GGTACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGCCTCCACAGGTTGCCCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 90 bp CCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACTGGCTCTTGCTaGAACAGAATCAAAGTACTTTCAATATGTGTACCCCAAAGTCTC +
Preference number: 1 (lower is better)
Translates to: PVEAVSKSIAQTGSC*NRIKVLSICVPQSL
Trigger: GAGACTTTGGGGTACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGCCTCCACAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 90 bp CAACCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACTGGCTCTTaGTGGAACAGAATCAAAGTACTTTCAATATGTGTACCCCAAAGT +
Preference number: 1 (lower is better)
Translates to: QPVEAVSKSIAQTGS*WNRIKVLSICVPQS
Trigger: ACTTTGGGGTACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGCCTCCACAGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 90 bp GGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTACTaGATTCAGCAAACTTATGGAGGTGCCAGAGAAAACAGTATTCAA +
Preference number: 1 (lower is better)
Translates to: GSKCHTVICQYKKYY*IQQTYGGARENSIQ
Trigger: TTGAATACTGTTTTCTCTGGCACCTCCATAAGTTTGCTGAATTCAGTAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 90 bp GGGAAGACCAAATCATTCTGTGAAAACACACAAGGCCACATAATATaGTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTTCCAGC +
Preference number: 1 (lower is better)
Translates to: GKTKSFCENTQGHII*LSPTSIIKQAYCSS
Trigger: GCTGGAACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTGTGTGTTTTCACAGAATGATTTGGTCTTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 90 bp CCTACACATAACATAAAGCATTCAGAACTCCACTGTAGAGACTGCTaGCAAGTTACTACTTACCATGAATTCCAGAAACAGAATTTAGAA +
Preference number: 1 (lower is better)
Translates to: PTHNIKHSELHCRDC*QVTTYHEFQKQNLE
Trigger: TTCTAAATTCTGTTTCTGGAATTCATGGTAAGTAGTAACTTGTCAGCAGTCTCTACAGTGGAGTTCTGAATGCTTTATGTTATGTGTAGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 90 bp AAGAATGAAGGCTCAGGAATCACTGTTATTCTAATAAAAATATCCTaGCGTAGCTTTCAAGTTCCCACTGAACTGTTAAGACGATTGAAG +
Preference number: 1 (lower is better)
Translates to: KNEGSGITVILIKIS*RSFQVPTELLRRLK
Trigger: CTTCAATCGTCTTAACAGTTCAGTGGGAACTTGAAAGCTACGTCAGGATATTTTTATTAGAATAACAGTGATTCCTGAGCCTTCATTCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR-3UTR TCA 90 bp CGTCAGACCCAAGGGGACCTGGGAAGGGCTGGAATGCATGTGCGTGCGTGCACGGCTGAGGAAGTGAAATaGGTCTCTGCCCACCCACAG +
Preference number: 2 (lower is better)
Translates to: RQTQGDLGRAGMHVRACTAEEVK*VSAHPQ
Trigger: CTGTGGGTGGGCAGAGACTCATTTCACTTCCTCAGC...CGTGCACGCACGCACATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCTGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR TCA 90 bp CCCGTCTGCTTTCCTGACACCGAGCCTTCTGGGCTCATTCACTCAGTAGCCTTCGCTTCCCACATGCTCTaGCCTGTGGTTACCTCCAGT +
Preference number: 2 (lower is better)
Translates to: PVCFPDTEPSGLIHSVAFASHML*PVVTSS
Trigger: ACTGGAGGTAACCACAGGTCAGAGCATGTGGGAAGC...GAAGGCTACTGAGTGAATGAGCCCAGAAGGCTCGGTGTCAGGAAAGCAGACGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR CCA 90 bp GCTGGAGGCTGTGGGAGCTGCTGGAGCAACTTCTCTGTGGGGTGGGCTCTGGAGCTCAAAGAATCAGGCTaGAGTGCTGAGGAAGTGAAA +
Preference number: 2 (lower is better)
Translates to: AGGCGSCWSNFSVGWALELKESG*SAEEVK
Trigger: TTTCACTTCCTCAGCACTCCAGCCTGATTCTTTGAG...CTCCAGAGCCCACCCCACAGAGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp TCTCTGTGGGGTGGGCTCTGGAGGCAGGCGACAGTGGTACCAGGCTGCCTACTGTGCAGGAGAGACATGTaGAAAGGAGTCTTCTCAAGT +
Preference number: 2 (lower is better)
Translates to: SLWGGLWRQATVVPGCLLCRRDM*KGVFSS
Trigger: ACTTGAGAAGACTCCTTTCCACATGTCTCTCCTGCA...CAGTAGGCAGCCTGGTACCACTGTCGCCTGCCTCCAGAGCCCACCCCACAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp CAAAGACTGCTGCACACAGGCCGCCTTCACACAGCTATCCTCGAGATAATGGCCAGACACAGGGAGGCATaGAGTGGCAGGGACAGGCTT +
Preference number: 2 (lower is better)
Translates to: QRLLHTGRLHTAILEIMARHREA*SGRDRL
Trigger: AAGCCTGTCCCTGCCACTCCATGCCTCCCTGTGTCT...GGCCATTATCTCGAGGATAGCTGTGTGAAGGCGGCCTGTGTGCAGCAGTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR TCA 90 bp GGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGACCAGCAGCTGAGGTCTTaGAGCACAGCCTGGAATTCA +
Preference number: 2 (lower is better)
Translates to: GSISRLLAGGRPANHLSDQQLRS*STAWNS
Trigger: TGAATTCCAGGCTGTGCTTCAAGACCTCAGCTGCTG...GTCTGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR TCA 90 bp CCTTTTGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTCCCACCCACAGCAGCTaGGGTCTTGAAGCACAGCCT +
Preference number: 2 (lower is better)
Translates to: PFVGSSTQVASRENSCPVPTHSS*GLEAQP
Trigger: AGGCTGTGCTTCAAGACCTCAGCTGCTGTGGGTGGG...AACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACAAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp AGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTGCAGAAGGGACAGCAGACGAGCCCTGGGCAGTGTTaGCAGCAAGTGCCACACTGT +
Preference number: 2 (lower is better)
Translates to: SFLSVPAPSCHVQKGQQTSPGQC*QQVPHC
Trigger: ACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCT...CGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CAA 90 bp GCTAAGAGCTGTACACTGCCCTGCTCCCTAAAACACCACATCTTCTaGATGCCAGGGTTATGTCTCAGCAGCCCTGGGCAGTGTTGGCAG +
Preference number: 2 (lower is better)
Translates to: AKSCTLPCSLKHHIF*MPGLCLSSPGQCWQ
Trigger: CTGCCAACACTGCCCAGGGCTGCTGAGACATAACCCTGGCATCAAGAAGATGTGGTGTTTTAGGGAGCAGGGCAGTGTACAGCTCTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR GCA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTTCCAGAGAAAACTCATaGCCAGTTTCAGAGCTCTCC +
Preference number: 2 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATSRENS*PVSELS
Trigger: GGAGAGCTCTGAAACTGGGCATGAGTTTTCTCTGGA...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp TGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTTCAGACACACACACACGGCATaGGCAGGGTGCCTATCACAG +
Preference number: 2 (lower is better)
Translates to: CREQHPGSIQRKLMPSFRHTHTA*AGCLSQ
Trigger: CTGTGATAGGCACCCTGCCCATGCCGTGTGTGTGTG...TCTGAAACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp GCCTGGCAATGTATCAGAGCTCCAGGATTCAGTCACCAGCAAAGGCTCTCGGGAACATGCTCTGACCTGTaGTTACCTCCAGTCCCTGTC +
Preference number: 2 (lower is better)
Translates to: AWQCIRAPGFSHQQRLSGTCSDL*LPPVPV
Trigger: GACAGGGACTGGAGGTAACCACAGGTCAGAGCATGT...TCCCGAGAGCCTTTGCTGGTGACTGAATCCTGGAGCTCTGATACATTGCCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR GCA 90 bp GGCAGCAGGAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGGCCCAAACTGGCTCTTaGTGGAACAGAATCAAAGTA +
Preference number: 2 (lower is better)
Translates to: GSRKLQSSEHNSPSCHLQAQTGS*WNRIKV
Trigger: TACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGC...CTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTCCTGCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR GCA 90 bp TGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTTCAGATGGAATGCATGTGCGTaGGTGCACGCACGTGTACAC +
Preference number: 2 (lower is better)
Translates to: CREQHPGSIQRKLMPSFRWNACA*VHARVH
Trigger: GTGTACACGTGCGTGCACGCACGCACATGCATTCCA...TCTGAAACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR TCA 90 bp TGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTTCAGAAGCCCAAAGCATTGCTaGGTGACCCTGTATCCAGTC +
Preference number: 2 (lower is better)
Translates to: CREQHPGSIQRKLMPSFRSPKHC*VTLYPV
Trigger: GACTGGATACAGGGTCACTCAGCAATGCTTTGGGCT...TCTGAAACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp AGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTGCAGAAGGGACAGCAGACGAGAACTGACCCTGTTTaGACCCTTGATTTCCCGAGG +
Preference number: 2 (lower is better)
Translates to: SFLSVPAPSCHVQKGQQTRTDPV*TLDFPR
Trigger: CCTCGGGAAATCAAGGGTCCAAACAGGGTCAGTTCT...CGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR TCA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCAGTGCATTAGGGAAGTaGGCTAGTGGTGGTGATGGA +
Preference number: 2 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVSALGK*ASGGDG
Trigger: TCCATCACCACCACTAGCTCACTTCCCTAATGCACT...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR-3UTR TCA 90 bp CAAAGACTGCTGCACACAGGCCGCCTTCACACAGCTATCCTCGAGATAATGGCCAGTGTGTCAGTTGCTTaGTCTAAACAGCAGAGGAAG +
Preference number: 2 (lower is better)
Translates to: QRLLHTGRLHTAILEIMASVSVA*SKQQRK
Trigger: CTTCCTCTGCTGTTTAGATCAAGCAACTGACACACT...GGCCATTATCTCGAGGATAGCTGTGTGAAGGCGGCCTGTGTGCAGCAGTCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR TCA 90 bp TGCCTATCACAGAGGGCAACCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACATCAGGCTGGAGTGCTaGGGAAGTGAAATGAGTCTC +
Preference number: 2 (lower is better)
Translates to: CLSQRATCGGSFKEYSPNIRLEC*GSEMSL
Trigger: GAGACTCATTTCACTTCCTCAGCACTCCAGCCTGAT...GTTTGGGCTATACTCTTTGAAACTGCCTCCACAGGTTGCCCTCTGTGATAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CAA 90 bp CATCTTCTTGATGCCAGGGTTATGTCTCAGCAGCCCTGGGCAGTGTaGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATT +
Preference number: 2 (lower is better)
Translates to: HLLDARVMSQQPWAV*AASATLSSANTKSI
Trigger: AATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCTGCTGAGACATAACCCTGGCATCAAGAAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR TCA 90 bp GCCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAACAAAGCAACTCAGATGGGACGACCAAATCATTCTGTaGAAACACACAAGGCCACAT +
Preference number: 2 (lower is better)
Translates to: AQFQSSPQIQETKQLRWDDQIIL*KHTRPH
Trigger: ATGTGGCCTTGTGTGTTTTCACAGAATGATTTGGTC...GTCCCATCTGAGTTGCTTTGTTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR GCA 90 bp AGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTGCAGAAGGGACAGCAGACGCACATGGTTCTGTCTTaGTTTGTCTTTTCATTCAAG +
Preference number: 2 (lower is better)
Translates to: SFLSVPAPSCHVQKGQQTHMVLS*FVFSFK
Trigger: CTTGAATGAAAAGACAAAGCAAGACAGAACCATGTG...CGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR CCA 90 bp AGCATCCAGAGAAAACTCATGCCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAAGAGTATAGCCCAAACTaGCTCTTGCTGGAACAGAAT +
Preference number: 2 (lower is better)
Translates to: SIQRKLMPSFRALPKSKKEYSPN*LLLEQN
Trigger: ATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTC...TTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGCATGAGTTTTCTCTGGATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp CAAGGCCACATAATATGCTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTAGACCCAAGGGGACCTaGGAAGGGCTGGAATGCATG +
Preference number: 2 (lower is better)
Translates to: QGHIICLSPTSIIKQAYCRPKGT*EGLECM
Trigger: CATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCT...ACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CCA 90 bp TTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTACTGAATTCAAGCCTAACTTCTGCTaGCTCTTCCACCTCCACCCA +
Preference number: 2 (lower is better)
Translates to: LAASATLSSANTKSITEFKPNFC*LFHLHP
Trigger: TGGGTGGAGGTGGAAGAGCCAGCAGAAGTTAGGCTT...GAATTCAGTAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CAA 90 bp GCAACCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACTGGCTCTaGCTGGAACAGAATCAAAGTACTTTCAATATGTGTACCCCAAAG +
Preference number: 2 (lower is better)
Translates to: ATCGGSFKEYSPNWL*LEQNQSTFNMCTPK
Trigger: CTTTGGGGTACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGCCTCCACAGGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR GCA 90 bp TTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTACTGAATTCCTCCATCTGTCCTTCTaGACACCAGAAAGAACCGTC +
Preference number: 2 (lower is better)
Translates to: LAASATLSSANTKSITEFLHLSF*TPERTV
Trigger: GACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG...GAATTCAGTAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR TCA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTAGTGCATTAGGGAAGTaGGCTAGTGGTGGTGATGGA +
Preference number: 2 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLSALGK*ASGGDG
Trigger: TCCATCACCACCACTAGCTCACTTCCCTAATGCACT...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CCA 72 bp GGAGCTGCTGGAGCAACTTCTCTGTGGGGTGGGCTCTaGAGGCAGGCGACAGTGGTACCAGGCTGCCTACTG +
Preference number: 3 (lower is better)
Translates to: GAAGATSLWGGL*RQATVVPGCLL
Trigger: CAGTAGGCAGCCTGGTACCACTGTCGCCTGCCTCCAGAGCCCACCCCACAGAGAAGTTGCTCCAGCAGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp CTGGAGGCTGTGGGAGCTGCTGGAGCAACTTCTCTGTaGGGTGGGCTCTGGAGGCAGGCGACAGTGGTACCA +
Preference number: 3 (lower is better)
Translates to: LEAVGAAGATSL*GGLWRQATVVP
Trigger: TGGTACCACTGTCGCCTGCCTCCAGAGCCCACCCCACAGAGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 72 bp GGTGGGCTCTGGAGGCAGGCGACAGTGGTACCAGGCTaGCTACTGAGTGTCTATGGGGGCGCTGATTACAGC +
Preference number: 3 (lower is better)
Translates to: GGLWRQATVVPG*LLSVYGGADYS
Trigger: GCTGTAATCAGCGCCCCCATAGACACTCAGTAGGCAGCCTGGTACCACTGTCGCCTGCCTCCAGAGCCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp CTACCCACGTCAGACCCAAGGGGACCTGGGAAGGGCTaGAATGCATGTGCGTGCGTGCACGCACGTGTACAC +
Preference number: 3 (lower is better)
Translates to: LPTSDPRGPGKG*NACACVHARVH
Trigger: GTGTACACGTGCGTGCACGCACGCACATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCTGACGTGGGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 72 bp TGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTaGTGGAGCAACTTCTCTGTGGGGTGGGCTCTGGAG +
Preference number: 3 (lower is better)
Translates to: CHLQTHAGGCGS*WSNFSVGWALE
Trigger: CTCCAGAGCCCACCCCACAGAGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp GTAAAAGGTGCTACCCACGTCAGACCCAAGGGGACCTaGGAAGGGCTGGAATGCATGTGCGTGCGTGCACGC +
Preference number: 3 (lower is better)
Translates to: VKGATHVRPKGT*EGLECMCVRAR
Trigger: GCGTGCACGCACGCACATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCTGACGTGGGTAGCACCTTTTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 72 bp GGCATGGAGTGGCAGGGACAGGCTTCCCACATGCTCTaGCCTGTGGTTACCTCCAGTCCCTGTCTAGTCACC +
Preference number: 3 (lower is better)
Translates to: GMEWQGQASHML*PVVTSSPCLVT
Trigger: GGTGACTAGACAGGGACTGGAGGTAACCACAGGTCAGAGCATGTGGGAAGCCTGTCCCTGCCACTCCATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 72 bp CACACACACACACACACACACACGGCATGGGCAGGGTaGCTATCACAGAGGGCAACCTGTGGAGGCAGTTTC +
Preference number: 3 (lower is better)
Translates to: HTHTHTHTAWAG*LSQRATCGGSF
Trigger: GAAACTGCCTCCACAGGTTGCCCTCTGTGATAGGCACCCTGCCCATGCCGTGTGTGTGTGTGTGTGTGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp GCACAACAGCCCATCCTGTCACTTGCAGACACACGCTaGAGGCTGTGGGAGCTGCTGGAGCAACTTCTCTGT +
Preference number: 3 (lower is better)
Translates to: AQQPILSLADTR*RLWELLEQLLC
Trigger: ACAGAGAAGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp ACACACACACACACACACACACACACACACACGGCATaGGCAGGGTGCCTATCACAGAGGGCAACCTGTGGA +
Preference number: 3 (lower is better)
Translates to: THTHTHTHTHTA*AGCLSQRATCG
Trigger: TCCACAGGTTGCCCTCTGTGATAGGCACCCTGCCCATGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp CAGCAGAGGAAGGGTAGCAAGGGGACTAAGCCTGCCTaGCAATGTATCAGAGCTCCAGGATTCAGTCACCAG +
Preference number: 3 (lower is better)
Translates to: QQRKGSKGTKPA*QCIRAPGFSHQ
Trigger: CTGGTGACTGAATCCTGGAGCTCTGATACATTGCCAGGCAGGCTTAGTCCCCTTGCTACCCTTCCTCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR CAA 90 bp GCCTGGCAATGTATCAGAGCTCCAGGATTCAGTCACCAGCAAAGGCTCTCGGGACTGTCTAGTCACCTGTaGCTCTTAGCAACTGCGGTG +
Preference number: 3 (lower is better)
Translates to: AWQCIRAPGFSHQQRLSGLSSHL*LLATAV
Trigger: CACCGCAGTTGCTAAGAGCAACAGGTGACTAGACAG...TCCCGAGAGCCTTTGCTGGTGACTGAATCCTGGAGCTCTGATACATTGCCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 72 bp CCACCAGCCAGACTCCAGCAATGGACAGACAGACTGTaGAGCTCTCACACTGAGATAAATGCAAGTCGGCTC +
Preference number: 3 (lower is better)
Translates to: PPARLQQWTDRL*SSHTEINASRL
Trigger: GAGCCGACTTGCATTTATCTCAGTGTGAGAGCTGCACAGTCTGTCTGTCCATTGCTGGAGTCTGGCTGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CCA 72 bp CATCTTCTTGATGCCAGGGTTATGTCTCAGCAGCCCTaGGCAGTGTTGGCAGCAAGTGCCACACTGTCATCT +
Preference number: 3 (lower is better)
Translates to: HLLDARVMSQQP*AVLAASATLSS
Trigger: AGATGACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCTGCTGAGACATAACCCTGGCATCAAGAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 72 bp GGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATaGCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAAC +
Preference number: 3 (lower is better)
Translates to: GSSTQVASRENS*PVSELSPNPRN
Trigger: GTTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp TGGACCCTTGATTTCCCGAGGGCCTCTCAGACCTGTTaGGCATGTTCAGACATGCTGGTGATTTGGTTGCTA +
Preference number: 3 (lower is better)
Translates to: WTLDFPRASQTC*ACSDMLVIWLL
Trigger: TAGCAACCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGGCCCTCGGGAAATCAAGGGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR TCA 72 bp TGTACCCCAAAGTCTCAAAGAATCAGGCTGGAGTGCTaGGGAAGTGAAATGAGTCTCTGCCCACCCACAGCA +
Preference number: 3 (lower is better)
Translates to: CTPKSQRIRLEC*GSEMSLCPPTA
Trigger: TGCTGTGGGTGGGCAGAGACTCATTTCACTTCCTCAGCACTCCAGCCTGATTCTTTGAGACTTTGGGGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 72 bp CCAGCAATGGACAGACAGACTGTGCAGCTCTCACACTaGGATAAATGCAAGTCGGCTCCAGTAGGTTGGTTG +
Preference number: 3 (lower is better)
Translates to: PAMDRQTVQLSH*DKCKSAPVGWL
Trigger: CAACCAACCTACTGGAGCCGACTTGCATTTATCTCAGTGTGAGAGCTGCACAGTCTGTCTGTCCATTGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 72 bp GCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTaGACACCAGAAAGAACCGTCTGCATAGACAGGATT +
Preference number: 3 (lower is better)
Translates to: ASRLLPRLHLSF*TPERTVCIDRI
Trigger: AATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR GCA 72 bp CCAGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTaGAGAAGGGACAGCAGACGAGGCTATAGACTTAAC +
Preference number: 3 (lower is better)
Translates to: PVSSQYLHLHAM*RRDSRRGYRLN
Trigger: GTTAAGTCTATAGCCTCGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR CAA 90 bp ACAAATATGTGCAAGGCAACCAACCGTCTCCACGGGGAAGACCAAATCATTCTGACAGCAGCTGAGGTCTaGAAGCACAGCCTGGAATTC +
Preference number: 3 (lower is better)
Translates to: TNMCKATNRLHGEDQIILTAAEV*KHSLEF
Trigger: GAATTCCAGGCTGTGCTTCAAGACCTCAGCTGCTGT...CAGAATGATTTGGTCTTCCCCGTGGAGACGGTTGGTTGCCTTGCACATATTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR-3UTR CAA 90 bp CCCGTCTGCTTTCCTGACACCGAGCCTTCTGGGCTCATTCACTCAGTAGCCTTCGAACTGTTAAGACGATaGAAGTCAACATTGCTCTTC +
Preference number: 3 (lower is better)
Translates to: PVCFPDTEPSGLIHSVAFELLRR*KSTLLF
Trigger: GAAGAGCAATGTTGACTTCAATCGTCTTAACAGTTC...GAAGGCTACTGAGTGAATGAGCCCAGAAGGCTCGGTGTCAGGAAAGCAGACGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR CAA 90 bp AGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTGCAGAAGGGACAGCAGACGAAACACCACATCTTCTaGATGCCAGGGTTATGTCTC +
Preference number: 3 (lower is better)
Translates to: SFLSVPAPSCHVQKGQQTKHHIF*MPGLCL
Trigger: GAGACATAACCCTGGCATCAAGAAGATGTGGTGTTT...CGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 72 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTaGCCAGGCTCCATCTGTCCTTCTGCACACCAGAAA +
Preference number: 3 (lower is better)
Translates to: SRLKVKVRLPDY*PGSICPSAHQK
Trigger: TTTCTGGTGTGCAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR-3UTR CAA 90 bp TTCCCGAGGGCCTCTCAGACCTGTTGGGCATGTTCAGACATGCTGGTGATTTGGAGAAAAGTGTGTCAGTaGCTTGATCTAAACAGCAGA +
Preference number: 3 (lower is better)
Translates to: FPRASQTCWACSDMLVIWRKVCQ*LDLNSR
Trigger: TCTGCTGTTTAGATCAAGCAACTGACACACTTTTCT...CCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGGCCCTCGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR TCA 72 bp ACAGCTAGGCAAGTTCAACCCCTAAACTTTGGCCTGTaGTGCAGGAGAGACATGTGGAAAGGAGTCTTCTCA +
Preference number: 3 (lower is better)
Translates to: TARQVQPLNFGL*CRRDMWKGVFS
Trigger: TGAGAAGACTCCTTTCCACATGTCTCTCCTGCATCACAGGCCAAAGTTTAGGGGTTGAACTTGCCTAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 72 bp TATGTCTCAGCAGCCCTGGGCAGTGTTGGCAGCAAGTaGCACACTGTCATCTGCCAATACAAAAAGTATTAC +
Preference number: 3 (lower is better)
Translates to: YVSAALGSVGSK*HTVICQYKKYY
Trigger: GTAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCTGCTGAGACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR TCA 72 bp ACCAACCGTCTCCACGGGGAAGACCAAATCATTCTGTaGAAACACACAAGGCCACATAATATGCTTATCTCC +
Preference number: 3 (lower is better)
Translates to: TNRLHGEDQIIL*KHTRPHNMLIS
Trigger: GGAGATAAGCATATTATGTGGCCTTGTGTGTTTTCACAGAATGATTTGGTCTTCCCCGTGGAGACGGTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR GCA 72 bp TGCAGAAGGGACAGCAGACGAGGCTATAGACTTAACTaGTCCACATGGTTCTGTCTTGCTTTGTCTTTTCAT +
Preference number: 3 (lower is better)
Translates to: CRRDSRRGYRLN*STWFCLALSFH
Trigger: ATGAAAAGACAAAGCAAGACAGAACCATGTGGAGCAGTTAAGTCTATAGCCTCGTCTGCTGTCCCTTCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR-3UTR CAA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTCAGGCTTCCAGACTATaGCCCAGGCTCCATCTGTCC +
Preference number: 3 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLQASRL*PRLHLS
Trigger: GGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTG...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR TCA 72 bp CCTCTCAGACCTGTTGGGCATGTTCAGACATGCTGGTaGTTTGGTTGCTACCTGTTTTCTAAGTTCATGTTA +
Preference number: 3 (lower is better)
Translates to: PLRPVGHVQTCW*FGCYLFSKFML
Trigger: TAACATGAACTTAGAAAACAGGTAGCAACCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CCA 72 bp GACAGCAGACGAGGCTATAGACTTAACTGCTCCACATaGTTCTGTCTTGCTTTGTCTTTTCATTCAAGTGAG +
Preference number: 3 (lower is better)
Translates to: DSRRGYRLNCST*FCLALSFHSSE
Trigger: CTCACTTGAATGAAAAGACAAAGCAAGACAGAACCATGTGGAGCAGTTAAGTCTATAGCCTCGTCTGCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CCA 72 bp ACCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACTaGCTCTTGCTGGAACAGAATCAAAGTACTTTCAAT +
Preference number: 3 (lower is better)
Translates to: TCGGSFKEYSPN*LLLEQNQSTFN
Trigger: ATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGCCTCCACAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CCA 72 bp GCAGTTTCAAAGAGTATAGCCCAAACTGGCTCTTGCTaGAACAGAATCAAAGTACTTTCAATATGTGTACCC +
Preference number: 3 (lower is better)
Translates to: AVSKSIAQTGSC*NRIKVLSICVP
Trigger: GGGTACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 72 bp TGCCACACTGTCATCTGCCAATACAAAAAGTATTACTaGATTCAGCAAACTTATGGAGGTGCCAGAGAAAAC +
Preference number: 3 (lower is better)
Translates to: CHTVICQYKKYY*IQQTYGGAREN
Trigger: GTTTTCTCTGGCACCTCCATAAGTTTGCTGAATTCAGTAATACTTTTTGTATTGGCAGATGACAGTGTGGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR GCA 72 bp GAGGCAGTTTCAAAGAGTATAGCCCAAACTGGCTCTTaGTGGAACAGAATCAAAGTACTTTCAATATGTGTA +
Preference number: 3 (lower is better)
Translates to: EAVSKSIAQTGS*WNRIKVLSICV
Trigger: TACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCTATACTCTTTGAAACTGCCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR TCA 72 bp TTGTTAGCAAAGGAAAACGCACACAGCTTCATCATCTaGATAAGTGAAGTATACTCCTCCAAGGTCTATATG +
Preference number: 3 (lower is better)
Translates to: LLAKENAHSFII*ISEVYSSKVYM
Trigger: CATATAGACCTTGGAGGAGTATACTTCACTTATTCAGATGATGAAGCTGTGTGCGTTTTCCTTTGCTAACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR TCA 72 bp GGCTCAGGAATCACTGTTATTCTAATAAAAATATCCTaGCGTAGCTTTCAAGTTCCCACTGAACTGTTAAGA +
Preference number: 3 (lower is better)
Translates to: GSGITVILIKIS*RSFQVPTELLR
Trigger: TCTTAACAGTTCAGTGGGAACTTGAAAGCTACGTCAGGATATTTTTATTAGAATAACAGTGATTCCTGAGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR GCA 72 bp AAATCATTCTGTGAAAACACACAAGGCCACATAATATaGTTATCTCCAACCTCAATCATAAAACAAGCCTAT +
Preference number: 3 (lower is better)
Translates to: KSFCENTQGHII*LSPTSIIKQAY
Trigger: ATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTGTGTGTTTTCACAGAATGATTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp ACACACACGGCATGGGCAGGGTGCCTATCACAGAGGGCAACCTGTGGAGGCAGTAAGGGCCGCCGGCCCTaGAGGCTGCCGTGCGTCAGC +
Preference number: 4 (lower is better)
Translates to: THTAWAGCLSQRATCGGSKGRRP*RLPCVS
Trigger: GCTGACGCACGGCAGCCTCCAGGGCCGGCGGCCCTT...ACTGCCTCCACAGGTTGCCCTCTGTGATAGGCACCCTGCCCATGCCGTGTGTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp CCCGTCTGCTTTCCTGACACCGAGCCTTCTGGGCTCATTCACTCAGTAGCCTTCGGCTCGGCCTCCTCCTaGCCATGGGTGTCGGCCGCG +
Preference number: 4 (lower is better)
Translates to: PVCFPDTEPSGLIHSVAFGSASS*PWVSAA
Trigger: CGCGGCCGACACCCATGGTCAGGAGGAGGCCGAGCC...GAAGGCTACTGAGTGAATGAGCCCAGAAGGCTCGGTGTCAGGAAAGCAGACGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp GCCTGGCAATGTATCAGAGCTCCAGGATTCAGTCACCAGCAAAGGCTCTCGGGAAAGGGCCGCCGGCCCTaGAGGCTGCCGTGCGTCAGC +
Preference number: 4 (lower is better)
Translates to: AWQCIRAPGFSHQQRLSGKGRRP*RLPCVS
Trigger: GCTGACGCACGGCAGCCTCCAGGGCCGGCGGCCCTT...TCCCGAGAGCCTTTGCTGGTGACTGAATCCTGGAGCTCTGATACATTGCCAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR GCA 90 bp ACACACACACGGCATGGGCAGGGTGCCTATCACAGAGGGCAACCTGTGGAGGCAACACTGCAGCCCAGCTaGAGGGGCTGGCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: THTRHGQGAYHRGQPVEATLQPS*RGWHCQ
Trigger: CTGACAGTGCCAGCCCCTGCAGCTGGGCTGCAGTGT...TGCCTCCACAGGTTGCCCTCTGTGATAGGCACCCTGCCCATGCCGTGTGTGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp TTCCCGAGGGCCTCTCAGACCTGTTGGGCATGTTCAGACATGCTGGTGATTTGGTGGCGCCGGCTGTGCTaGCGCACCACGTGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: FPRASQTCWACSDMLVIWWRRLC*RTTCAF
Trigger: GAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCA...CCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGGCCCTCGGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
3UTR CAA 72 bp CTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTaGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LQSSEHNSPSCH*QTHAGGCGSCW
Trigger: CCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CGTCAGACCCAAGGGGACCTGGGAAGGGCTGGAATGCATGTGCGTGCGTGCACGGAGCTCACTTTGGCCTaGGCTACTCAGTTCACTGCT +
Preference number: 4 (lower is better)
Translates to: RQTQGDLGRAGMHVRACTELTLA*ATQFTA
Trigger: AGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTC...CGTGCACGCACGCACATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCTGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp ACAAATATGTGCAAGGCAACCAACCGTCTCCACGGGGAAGACCAAATCATTCTGGGCTCGGCCTCCTCCTaGCCATGGGTGTCGGCCGCG +
Preference number: 4 (lower is better)
Translates to: TNMCKATNRLHGEDQIILGSASS*PWVSAA
Trigger: CGCGGCCGACACCCATGGTCAGGAGGAGGCCGAGCC...CAGAATGATTTGGTCTTCCCCGTGGAGACGGTTGGTTGCCTTGCACATATTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp TTCCCGAGGGCCTCTCAGACCTGTTGGGCATGTTCAGACATGCTGGTGATTTGGTGCGCTGGTGGGAGTTaGGCTTGGCGTGTGTGGGGA +
Preference number: 4 (lower is better)
Translates to: FPRASQTCWACSDMLVIWCAGGS*AWRVWG
Trigger: TCCCCACACACGCCAAGCTCAACTCCCACCAGCGCA...CCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGGCCCTCGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp AGCATCCAGAGAAAACTCATGCCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAAGCGCCGCAGCCAGCGTaGAGACGCCGCGGTCGAAGC +
Preference number: 4 (lower is better)
Translates to: SIQRKLMPSFRALPKSKKAPQPA*RRRGRS
Trigger: GCTTCGACCGCGGCGTCTTCACGCTGGCTGCGGCGC...TTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGCATGAGTTTTCTCTGGATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp GGGCAGTGTTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTAGCGCCGCAGCCAGCGTaGAGACGCCGCGGTCGAAGC +
Preference number: 4 (lower is better)
Translates to: GQCWQQVPHCHLPIQKVLAPQPA*RRRGRS
Trigger: GCTTCGACCGCGGCGTCTTCACGCTGGCTGCGGCGC...TAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTTGCTATGCTTGGAGGTaGAGAGTCGGTTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATCYAWR*RVGCSW
Trigger: CCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCA...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp TACACACACACACACACACACACACACACACACACACGGCATGGGCAGGGTGCCGTTCACTGCTGGGTGTaGGAGAGCTCGGAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: YTHTHTHTHTHTRHGQGAVHCWV*ESSELP
Trigger: TGGAAGCTCCGAGCTCTCTCACACCCAGCAGTGAAC...GGCACCCTGCCCATGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp GCCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAACAAAGCAACTCAGATGGGACTGGCGCCGGCTGTGCTaGCGCACCACGTGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: AQFQSSPQIQETKQLRWDWRRLC*RTTCAF
Trigger: GAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCA...GTCCCATCTGAGTTGCTTTGTTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CGTCAGACCCAAGGGGACCTGGGAAGGGCTGGAATGCATGTGCGTGCGTGCACGAAGTGGGCTCGATTATaGGAAAACAGGGCACTCACT +
Preference number: 4 (lower is better)
Translates to: RQTQGDLGRAGMHVRACTKWARL*ENRALT
Trigger: AGTGAGTGCCCTGTTTTCCCATAATCGAGCCCACTT...CGTGCACGCACGCACATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCTGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp GAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCTGCACTGAAGCTGCCTaGTTGGAGAACCGTGGCCGA +
Preference number: 4 (lower is better)
Translates to: EAPELRAQQPILSLADTRCTEAA*LENRGR
Trigger: TCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCA...GCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp GGCAGCAGGAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGCCCCTGGACCACATCTaGGACAGGAGACAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: GSRKLQSSEHNSPSCHLQPLDHI*DRRQVL
Trigger: CAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGG...CTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTCCTGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp GAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCGTCCTTCTGAGCCCCTaGCCTCTCTGTAGAGCTGGA +
Preference number: 4 (lower is better)
Translates to: EAPELRAQQPILSLADTRVLLSP*PLCRAG
Trigger: TCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGAC...GCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp GAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCAGAGCTCTTGCTCCCTaGAGTGGGCTCGATTATGGG +
Preference number: 4 (lower is better)
Translates to: EAPELRAQQPILSLADTRRALAP*SGLDYG
Trigger: CCCATAATCGAGCCCACTTCAGGGAGCAAGAGCTCT...GCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp AGAGGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAAGCTCTGAGTCCTTCTaGGCCCCTGGCCTCTCTGTA +
Preference number: 4 (lower is better)
Translates to: RGSISRLLAGGRPANHLSSSESF*APGLSV
Trigger: TACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCT...TGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp GGCAGCAGGAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGGCAGATCTGGCACACTaGCAGTTTCTTGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: GSRKLQSSEHNSPSCHLQADLAH*QFLGWC
Trigger: ACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGC...CTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTCCTGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp CCTTTTGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTGGGATCTGGACACACTaGAGCCCAGCTGCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: PFVGSSTQVASRENSCPVGIWTH*SPAAGA
Trigger: AGCCCCTGCAGCTGGGCTGCAGTGTGTCCAGATCCC...AACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACAAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp GAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCAGCAAAACCTCCAGGTaGTGGAAGCACCTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: EAPELRAQQPILSLADTRSKTSR*WKHLLE
Trigger: CTCCAGGAGGTGCTTCCAGCACCTGGAGGTTTTGCT...GCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CGTCAGACCCAAGGGGACCTGGGAAGGGCTGGAATGCATGTGCGTGCGTGCACGACACTGCCAGTTTCTTaGGTGGTGTCTGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: RQTQGDLGRAGMHVRACTTLPVS*VVSEEV
Trigger: AACTTCTTCAGACACCACCCAAGAAACTGGCAGTGT...CGTGCACGCACGCACATGCATTCCAGCCCTTCCCAGGTCCCCTTGGGTCTGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp GGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGACGATTGGGATGGCCCATaGCTTTCTTTCTGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: GSISRLLAGGRPANHLSDDWDGP*LSFCPW
Trigger: CCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATC...GTCTGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTCTGGACAGCACAGATTaGGATGGCCCATGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATLDSTD*DGPWLS
Trigger: AGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAG...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp GCCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAACAAAGCAACTCAGATGGGACTGCGCTGGTGGGAGTTaGGCTTGGCGTGTGTGGGGA +
Preference number: 4 (lower is better)
Translates to: AQFQSSPQIQETKQLRWDCAGGS*AWRVWG
Trigger: TCCCCACACACGCCAAGCTCAACTCCCACCAGCGCA...GTCCCATCTGAGTTGCTTTGTTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp AGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTGCAGAAGGGACAGCAGACGGTTCACTGCTGGGTGTaGGAGAGCTCGGAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: SFLSVPAPSCHVQKGQQTVHCWV*ESSELP
Trigger: TGGAAGCTCCGAGCTCTCTCACACCCAGCAGTGAAC...CGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp AGTTTCCTCTCAGTACCTGCACCTTCATGCCATGTGCAGAAGGGACAGCAGACGAGCTCTGAGTCCTTCTaGGCCCCTGGCCTCTCTGTA +
Preference number: 4 (lower is better)
Translates to: SFLSVPAPSCHVQKGQQTSSESF*APGLSV
Trigger: TACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCT...CGTCTGCTGTCCCTTCTGCACATGGCATGAAGGTGCAGGTACTGAGAGGAAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTGCCAGCACTGAGCTCTaGGTCCTTCTGAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLASTEL*VLLSPW
Trigger: CCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGC...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR GCA 90 bp GGAAGTGAAATGAGTCTCTGCCCACCCACAGCAGCTGAGGTCTTGAAGCACAGCCCTGAGGGGTCATCCTaGAGAACAGGGATCTGGACA +
Preference number: 4 (lower is better)
Translates to: GSEMSLCPPTAAEVLKHSPEGSS*RTGIWT
Trigger: TGTCCAGATCCCTGTTCTGCAGGATGACCCCTCAGG...GCTGTGCTTCAAGACCTCAGCTGCTGTGGGTGGGCAGAGACTCATTTCACTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp GAGGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGAGGTGGGTGATACTGTaGCCCTTCAGATGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: EVLLAGYWQAAGQPITFQRWVIL*PFRCSA
Trigger: AGCAGAGCATCTGAAGGGCCACAGTATCACCCACCT...CTGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp AGGGTTATGTCTCAGCAGCCCTGGGCAGTGTTGGCAGCAAGTGCCACACTGTCAAGGACTGTCCAAACTTaGAGGCATATCACCGTGGGC +
Preference number: 4 (lower is better)
Translates to: RVMSQQPWAVLAASATLSRTVQT*RHITVG
Trigger: GCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCT...TGACAGTGTGGCACTTGCTGCCAACACTGCCCAGGGCTGCTGAGACATAACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp GGCAAGCCTAACTTCTGCTGGCTCTTCCACCTCCACCCAGGTTCTGCTAGCTCTCTGGACAGCACAGATTaGGATGGCCCATGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: GKPNFCWLFHLHPGSASSLDSTD*DGPWLS
Trigger: AGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAG...AGAGCTAGCAGAACCTGGGTGGAGGTGGAAGAGCCAGCAGAAGTTAGGCTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp CAAAGTACTTTCAATATGTGTACCCCAAAGTCTCAAAGAATCAGGCTGGAGTGCCATCCAGCGGGCACTTaGAGGGCCGCCGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: QSTFNMCTPKSQRIRLECHPAGT*RAAGPG
Trigger: TCCAGGGCCGGCGGCCCTTCAAGTGCCCGCTGGATG...GCACTCCAGCCTGATTCTTTGAGACTTTGGGGTACACATATTGAAAGTACTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp GGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGACGTGAATCATCTGCACTaGAGCTGCCTGGTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: GSISRLLAGGRPANHLSDVNHLH*SCLVGE
Trigger: TTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCAC...GTCTGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCAGCTCTGAGTCCTTCTaGGCCCCTGGCCTCTCTGTA +
Preference number: 4 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVSSESF*APGLSV
Trigger: TACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCT...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp GAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCCCTTTTACTTTCCTGTaGGCAGAGTCAGAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: EAPELRAQQPILSLADTRPFTFL*AESEAP
Trigger: AGGAGCCTCTGACTCTGCTCACAGGAAAGTAAAAGG...GCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp GAAGCTCCAGAGCTCAGAGCACAACAGCCCATCCTGTCACTTGCAGACACACGCACTTCCTGGTACCTGTaGAGTCTCCAGTCCAGCAAA +
Preference number: 4 (lower is better)
Translates to: EAPELRAQQPILSLADTRTSWYL*SLQSSK
Trigger: TTTGCTGGACTGGAGACTGCACAGGTACCAGGAAGT...GCGTGTGTCTGCAAGTGACAGGATGGGCTGTTGTGCTCTGAGCTCTGGAGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CCTTTTGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTTGCGAGCTGAGAACCTaGCACAGCACCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: PFVGSSTQVASRENSCPVCELRT*HSTLPQ
Trigger: CTGTGGAAGGGTGCTGTGCCAGGTTCTCAGCTCGCA...AACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACAAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTCTGTCAAGTTATTGCTaGGGGTCAAAGCTGGAGAGT +
Preference number: 4 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATLSSYC*GSKLES
Trigger: ACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAG...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp GCCTGGCAATGTATCAGAGCTCCAGGATTCAGTCACCAGCAAAGGCTCTCGGGACTTTCTTTCTGCCCCTaGACCACATCTGGGACAGGA +
Preference number: 4 (lower is better)
Translates to: AWQCIRAPGFSHQQRLSGLSFCP*TTSGTG
Trigger: TCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAG...TCCCGAGAGCCTTTGCTGGTGACTGAATCCTGGAGCTCTGATACATTGCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp CCCGTCTGCTTTCCTGACACCGAGCCTTCTGGGCTCATTCACTCAGTAGCCTTCCTCTGCTCTAGTGAATaGCTTGCCACAACCTTCAAC +
Preference number: 4 (lower is better)
Translates to: PVCFPDTEPSGLIHSVAFLCSSE*LATTFN
Trigger: GTTGAAGGTTGTGGCAAGTCATTCACTAGAGCAGAG...GAAGGCTACTGAGTGAATGAGCCCAGAAGGCTCGGTGTCAGGAAAGCAGACGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp AGAGGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCACTCCACTGGGTACCATaGGAGTTCCACAGAAACAAC +
Preference number: 4 (lower is better)
Translates to: RGSISRLLAGGRPANHLSLHWVP*EFHRNN
Trigger: GTTGTTTCTGTGGAACTCTCATGGTACCCAGTGGAG...TGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp CTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCTGCATAGACAGGATTCATCACCAGGCAGCCTACTaGTCCTGTGCTCATGGCCTG +
Preference number: 4 (lower is better)
Translates to: LHLSFCTPERTVCIDRIHHQAAY*SCAHGL
Trigger: CAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTG...ATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp TCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTGTGCGAGCTGAGAACCTaGCACAGCACCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: SKSKSGFQTIAQAPSVLLCELRT*HSTLPQ
Trigger: CTGTGGAAGGGTGCTGTGCCAGGTTCTCAGCTCGCA...CAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp GGAAGTGAAATGAGTCTCTGCCCACCCACAGCAGCTGAGGTCTTGAAGCACAGCCAGCACAGATTGGGATaGCCCATGGCTTTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: GSEMSLCPPTAAEVLKHSQHRLG*PMAFFL
Trigger: CAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTG...GCTGTGCTTCAAGACCTCAGCTGCTGTGGGTGGGCAGAGACTCATTTCACTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CAAAGACTGCTGCACACAGGCCGCCTTCACACAGCTATCCTCGAGATAATGGCCCAGCACAGATTGGGATaGCCCATGGCTTTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: QRLLHTGRLHTAILEIMAQHRLG*PMAFFL
Trigger: CAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTG...GGCCATTATCTCGAGGATAGCTGTGTGAAGGCGGCCTGTGTGCAGCAGTCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTGTCCTTCTGAGCCCCTaGCCTCTCTGTAGAGCTGGA +
Preference number: 4 (lower is better)
Translates to: SRLKVKVRLPDYCPGSICVLLSP*PLCRAG
Trigger: TCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGAC...ACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
3UTR CAA 72 bp GAAATGAGTCTCTGCCCACCCACAGCAGCTGAGGTCTaGAAGCACAGCCTGGAATTCAGTCTTCATTGGCTC +
Preference number: 4 (lower is better)
Translates to: EMSLCPPTAAEV*KHSLEFSLHWL
Trigger: GAGCCAATGAAGACTGAATTCCAGGCTGTGCTTCAAGACCTCAGCTGCTGTGGGTGGGCAGAGACTCATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp TACACACACACACACACACACACACACACACACACACGGCATGGGCAGGGTGCCCCAGCCACAACTGTCTaGGTCACAAATAAATGGTCT +
Preference number: 4 (lower is better)
Translates to: YTHTHTHTHTHTRHGQGAPATTV*VTNKWS
Trigger: AGACCATTTATTTGTGACTCAGACAGTTGTGGCTGG...GGCACCCTGCCCATGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp ACACACACACGGCATGGGCAGGGTGCCTATCACAGAGGGCAACCTGTGGAGGCAAGATGTTTCTTAGAATaGATGTACAGACTGCTGCGA +
Preference number: 4 (lower is better)
Translates to: THTRHGQGAYHRGQPVEARCFLE*MYRLLR
Trigger: TCGCAGCAGTCTGTACATTCATTCTAAGAAACATCT...TGCCTCCACAGGTTGCCCTCTGTGATAGGCACCCTGCCCATGCCGTGTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTTGCTATGCTTGGAGGTaGAGAGTCGGTTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SRLKVKVRLPDYCPGSICCYAWR*RVGCSW
Trigger: CCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCA...ACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp ACTAGATGTTTTGCCAGAGCTCAACCTGACTTTGGCTTCACTACAGCATACAGTGCCAGCACTGAGCTCTaGGTCCTTCTGAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: TRCFARAQPDFGFTTAYSASTEL*VLLSPW
Trigger: CCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGC...ACTGTATGCTGTAGTGAAGCCAAAGTCAGGTTGAGCTCTGGCAAAACATCTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp GGGCAGTGTTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTACACCAGGCAGCCTACTaGTCCTGTGCTCATGGCCTG +
Preference number: 4 (lower is better)
Translates to: GQCWQQVPHCHLPIQKVLHQAAY*SCAHGL
Trigger: CAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTG...TAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp CAAAGACTGCTGCACACAGGCCGCCTTCACACAGCTATCCTCGAGATAATGGCCAAGTGGGCTCGATTATaGGAAAACAGGGCACTCACT +
Preference number: 4 (lower is better)
Translates to: QRLLHTGRLHTAILEIMAKWARL*ENRALT
Trigger: AGTGAGTGCCCTGTTTTCCCATAATCGAGCCCACTT...GGCCATTATCTCGAGGATAGCTGTGTGAAGGCGGCCTGTGTGCAGCAGTCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp CTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCTGCATAGACAGGATTCATTGCACTGAAGCTGCCTaGTTGGAGAACCGTGGCCGA +
Preference number: 4 (lower is better)
Translates to: LHLSFCTPERTVCIDRIHCTEAA*LENRGR
Trigger: TCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCA...ATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp TCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTGCCCCTGGACCACATCTaGGACAGGAGACAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: SKSKSGFQTIAQAPSVLLPLDHI*DRRQVL
Trigger: CAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGG...CAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCGTGAATCATCTGCACTaGAGCTGCCTGGTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVVNHLH*SCLVGE
Trigger: TTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCAC...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR GCA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCAGCCTACTGCTCCTGTaGTCATGGCCTGTGAATCAT +
Preference number: 4 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVSLLLL*SWPVNH
Trigger: ATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCT...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR GCA 90 bp ACTAGATGTTTTGCCAGAGCTCAACCTGACTTTGGCTTCACTACAGCATACAGTCACCAGGCAGCCTACTaGTCCTGTGCTCATGGCCTG +
Preference number: 4 (lower is better)
Translates to: TRCFARAQPDFGFTTAYSHQAAY*SCAHGL
Trigger: CAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTG...ACTGTATGCTGTAGTGAAGCCAAAGTCAGGTTGAGCTCTGGCAAAACATCTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCTGCATAGACAGGATTCATCCCCTGGACCACATCTaGGACAGGAGACAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: LHLSFCTPERTVCIDRIHPLDHI*DRRQVL
Trigger: CAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGG...ATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCAGCACAGATTGGGATaGCCCATGGCTTTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVQHRLG*PMAFFL
Trigger: CAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTG...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp ACAAATATGTGCAAGGCAACCAACCGTCTCCACGGGGAAGACCAAATCATTCTGTGCAGAACAGGGATCTaGACACACTGCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: TNMCKATNRLHGEDQIILCRTGI*THCSPA
Trigger: AGCTGGGCTGCAGTGTGTCCAGATCCCTGTTCTGCA...CAGAATGATTTGGTCTTCCCCGTGGAGACGGTTGGTTGCCTTGCACATATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR TCA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTGTGAATCATCTGCACTaGAGCTGCCTGGTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLVNHLH*SCLVGE
Trigger: TTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCAC...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTTGTGCTCATGGCCTGTaGATCATCTGCACTGAAGCT +
Preference number: 4 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLCAHGL*IICTEA
Trigger: AGCTTCAGTGCAGATGATTCACAGGCCATGAGCACA...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp TCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTGTGTGCTCATGGCCTGTaGATCATCTGCACTGAAGCT +
Preference number: 4 (lower is better)
Translates to: SKSKSGFQTIAQAPSVLLCAHGL*IICTEA
Trigger: AGCTTCAGTGCAGATGATTCACAGGCCATGAGCACA...CAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp CAAAGTACTTTCAATATGTGTACCCCAAAGTCTCAAAGAATCAGGCTGGAGTGCCAGGCAGATCCACGGTaGAGTAGGGGTGGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: QSTFNMCTPKSQRIRLECQADPR*SRGGRQ
Trigger: CTGCCTTCCACCCCTACTTCACCGTGGATCTGCCTG...GCACTCCAGCCTGATTCTTTGAGACTTTGGGGTACACATATTGAAAGTACTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp ACTAGATGTTTTGCCAGAGCTCAACCTGACTTTGGCTTCACTACAGCATACAGTGGACGCAGCTTGTCATaGGACTGCAGGTGCCGTTTG +
Preference number: 4 (lower is better)
Translates to: TRCFARAQPDFGFTTAYSGRSLS*DCRCRL
Trigger: CAAACGGCACCTGCAGTCGCATGACAAGCTGCGTCC...ACTGTATGCTGTAGTGAAGCCAAAGTCAGGTTGAGCTCTGGCAAAACATCTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
3UTR CAA 72 bp TTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATaGCCCAGGCTCCATCTGTCCTTCTGCACACCAGAA +
Preference number: 4 (lower is better)
Translates to: FQTQSQSQASRL*PRLHLSFCTPE
Trigger: TTCTGGTGTGCAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR GCA 90 bp TGCCTATCACAGAGGGCAACCTGTGGAGGCAGTTTCAAAGAGTATAGCCCAAACAATGAATGTACAGACTaGTGCGAGCTGAGAACCTGG +
Preference number: 4 (lower is better)
Translates to: CLSQRATCGGSFKEYSPNNECTD*CELRTW
Trigger: CCAGGTTCTCAGCTCGCAGCAGTCTGTACATTCATT...GTTTGGGCTATACTCTTTGAAACTGCCTCCACAGGTTGCCCTCTGTGATAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTAATGAATGTACAGACTaGTGCGAGCTGAGAACCTGG +
Preference number: 4 (lower is better)
Translates to: SRLKVKVRLPDYCPGSICNECTD*CELRTW
Trigger: CCAGGTTCTCAGCTCGCAGCAGTCTGTACATTCATT...ACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR GCA 90 bp GTCTCCACGGGGAAGACCAAATCATTCTGTGAAAACACACAAGGCCACATAATACTGCCGCACCACGTGTaGCTTCATGCTATGCTTGGA +
Preference number: 4 (lower is better)
Translates to: VSTGKTKSFCENTQGHIILPHHV*LHAMLG
Trigger: TCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAG...TATTATGTGGCCTTGTGTGTTTTCACAGAATGATTTGGTCTTCCCCGTGGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp CCTTTTGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTGTCAGAGAAAAGTGCTaGGAGATCTATGTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: PFVGSSTQVASRENSCPVVREKC*EIYVGE
Trigger: CTCACCAACATAGATCTCGCAGCACTTTTCTCTGAC...AACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACAAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCTGTCAAGTTATTGCTaGGGGTCAAAGCTGGAGAGT +
Preference number: 4 (lower is better)
Translates to: SRLKVKVRLPDYCPGSICLSSYC*GSKLES
Trigger: ACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAG...ACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTGTCAAGTTATTGCTaGGGGTCAAAGCTGGAGAGT +
Preference number: 4 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLLSSYC*GSKLES
Trigger: ACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAG...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp ACAAATATGTGCAAGGCAACCAACCGTCTCCACGGGGAAGACCAAATCATTCTGCTCTGCTCTAGTGAATaGCTTGCCACAACCTTCAAC +
Preference number: 4 (lower is better)
Translates to: TNMCKATNRLHGEDQIILLCSSE*LATTFN
Trigger: GTTGAAGGTTGTGGCAAGTCATTCACTAGAGCAGAG...CAGAATGATTTGGTCTTCCCCGTGGAGACGGTTGGTTGCCTTGCACATATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp GAGGCTATAGACTTAACTGCTCCACATGGTTCTGTCTTGCTTTGTCTTTTCATTGGACGCAGCTTGTCATaGGACTGCAGGTGCCGTTTG +
Preference number: 4 (lower is better)
Translates to: EAIDLTAPHGSVLLCLFIGRSLS*DCRCRL
Trigger: CAAACGGCACCTGCAGTCGCATGACAAGCTGCGTCC...AATGAAAAGACAAAGCAAGACAGAACCATGTGGAGCAGTTAAGTCTATAGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTACACTGCCAGTTTCTTaGGTGGTGTCTGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: SRLKVKVRLPDYCPGSICTLPVS*VVSEEV
Trigger: AACTTCTTCAGACACCACCCAAGAAACTGGCAGTGT...ACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp TTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTACTGAATTCGTCCTTCTGAGCCCCTaGCCTCTCTGTAGAGCTGGA +
Preference number: 4 (lower is better)
Translates to: LAASATLSSANTKSITEFVLLSP*PLCRAG
Trigger: TCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGAC...GAATTCAGTAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp GAGGCTATAGACTTAACTGCTCCACATGGTTCTGTCTTGCTTTGTCTTTTCATTAGAGCTCTTGCTCCCTaGAGTGGGCTCGATTATGGG +
Preference number: 4 (lower is better)
Translates to: EAIDLTAPHGSVLLCLFIRALAP*SGLDYG
Trigger: CCCATAATCGAGCCCACTTCAGGGAGCAAGAGCTCT...AATGAAAAGACAAAGCAAGACAGAACCATGTGGAGCAGTTAAGTCTATAGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp CTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCTGCATAGACAGGATTCATCCAGCCACAACTGTCTaGGTCACAAATAAATGGTCT +
Preference number: 4 (lower is better)
Translates to: LHLSFCTPERTVCIDRIHPATTV*VTNKWS
Trigger: AGACCATTTATTTGTGACTCAGACAGTTGTGGCTGG...ATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp TCTAGGACTTGTCACTACGTGAAAAGCACAAAGGTGAATATTTCAATAGTAAGAGCCAGCACTGAGCTCTaGGTCCTTCTGAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: SRTCHYVKSTKVNISIVRASTEL*VLLSPW
Trigger: CCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGC...TCTTACTATTGAAATATTCACCTTTGTGCTTTTCACGTAGTGACAAGTCCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp TGTAAGAATGTCAATTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCGATTGGGATGGCCCATaGCTTTCTTTCTGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: CKNVNSRLKVKVRLPDYCDWDGP*LSFCPW
Trigger: CCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATC...GCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAATTGACATTCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp CAAGGCCACATAATATGCTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTTGGCCTGAGTGGACATaGGGAGGGTTGATCGTGCCA +
Preference number: 4 (lower is better)
Translates to: QGHIICLSPTSIIKQAYCWPEWT*GGLIVP
Trigger: TGGCACGATCAACCCTCCTCATGTCCACTCAGGCCA...ACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp AGCCCAAACTGGCTCTTGCTGGAACAGAATCAAAGTACTTTCAATATGTGTACCAGCCTACTGCTCCTGTaGTCATGGCCTGTGAATCAT +
Preference number: 4 (lower is better)
Translates to: SPNWLLLEQNQSTFNMCTSLLLL*SWPVNH
Trigger: ATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCT...GGTACACATATTGAAAGTACTTTGATTCTGTTCCAGCAAGAGCCAGTTTGGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp TTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTACTGAATTCGCAGATCTGGCACACTaGCAGTTTCTTGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: LAASATLSSANTKSITEFADLAH*QFLGWC
Trigger: ACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGC...GAATTCAGTAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR GCA 90 bp TGTAAGAATGTCAATTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCGCAGATCTGGCACACTaGCAGTTTCTTGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: CKNVNSRLKVKVRLPDYCADLAH*QFLGWC
Trigger: ACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGC...GCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAATTGACATTCTTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp GAGGCTATAGACTTAACTGCTCCACATGGTTCTGTCTTGCTTTGTCTTTTCATTGAGCTCACTTTGGCCTaGGCTACTCAGTTCACTGCT +
Preference number: 4 (lower is better)
Translates to: EAIDLTAPHGSVLLCLFIELTLA*ATQFTA
Trigger: AGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTC...AATGAAAAGACAAAGCAAGACAGAACCATGTGGAGCAGTTAAGTCTATAGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp GGGCAGTGTTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTATTGTTCCACCTTTATTaGAACCAGCAGATCTGGCAC +
Preference number: 4 (lower is better)
Translates to: GQCWQQVPHCHLPIQKVLLFHLY*NQQIWH
Trigger: GTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAA...TAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp CAAAGTACTTTCAATATGTGTACCCCAAAGTCTCAAAGAATCAGGCTGGAGTGCGTAATCAGTTCTTGCTaGGCCCCCACTTTCCAAGTA +
Preference number: 4 (lower is better)
Translates to: QSTFNMCTPKSQRIRLECVISSC*APTFQV
Trigger: TACTTGGAAAGTGGGGGCTCAGCAAGAACTGATTAC...GCACTCCAGCCTGATTCTTTGAGACTTTGGGGTACACATATTGAAAGTACTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp TGTAAGAATGTCAATTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCAGCCTACTGCTCCTGTaGTCATGGCCTGTGAATCAT +
Preference number: 4 (lower is better)
Translates to: CKNVNSRLKVKVRLPDYCSLLLL*SWPVNH
Trigger: ATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCT...GCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAATTGACATTCTTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp TCTAGGACTTGTCACTACGTGAAAAGCACAAAGGTGAATATTTCAATAGTAAGATGCACTGAAGCTGCCTaGTTGGAGAACCGTGGCCGA +
Preference number: 4 (lower is better)
Translates to: SRTCHYVKSTKVNISIVRCTEAA*LENRGR
Trigger: TCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCA...TCTTACTATTGAAATATTCACCTTTGTGCTTTTCACGTAGTGACAAGTCCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp CAAGGCCACATAATATGCTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTAAAACCTCCAGGTGCTaGAAGCACCTCCTGGAGGAC +
Preference number: 4 (lower is better)
Translates to: QGHIICLSPTSIIKQAYCKTSRC*KHLLED
Trigger: GTCCTCCAGGAGGTGCTTCCAGCACCTGGAGGTTTT...ACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp CAAGGCCACATAATATGCTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTAGGACTGTCCAAACTTaGAGGCATATCACCGTGGGC +
Preference number: 4 (lower is better)
Translates to: QGHIICLSPTSIIKQAYCRTVQT*RHITVG
Trigger: GCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCT...ACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp TTCTGTGAAAACACACAAGGCCACATAATATGCTTATCTCCAACCTCAATCATACTTTCTTTCTGCCCCTaGACCACATCTGGGACAGGA +
Preference number: 4 (lower is better)
Translates to: FCENTQGHIICLSPTSIILSFCP*TTSGTG
Trigger: TCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAG...TATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTGTGTGTTTTCACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTGATTGGGATGGCCCATaGCTTTCTTTCTGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLDWDGP*LSFCPW
Trigger: CCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATC...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR TCA 90 bp TTCTGTGAAAACACACAAGGCCACATAATATGCTTATCTCCAACCTCAATCATATGTGCTCATGGCCTGTaGATCATCTGCACTGAAGCT +
Preference number: 4 (lower is better)
Translates to: FCENTQGHIICLSPTSIICAHGL*IICTEA
Trigger: AGCTTCAGTGCAGATGATTCACAGGCCATGAGCACA...TATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTGTGTGTTTTCACAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR GCA 90 bp TGTAAGAATGTCAATTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCGTCAGAGAAAAGTGCTaGGAGATCTATGTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: CKNVNSRLKVKVRLPDYCVREKC*EIYVGE
Trigger: CTCACCAACATAGATCTCGCAGCACTTTTCTCTGAC...GCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAATTGACATTCTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp TCTAGGACTTGTCACTACGTGAAAAGCACAAAGGTGAATATTTCAATAGTAAGACTTTCTTTCTGCCCCTaGACCACATCTGGGACAGGA +
Preference number: 4 (lower is better)
Translates to: SRTCHYVKSTKVNISIVRLSFCP*TTSGTG
Trigger: TCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAG...TCTTACTATTGAAATATTCACCTTTGTGCTTTTCACGTAGTGACAAGTCCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp TCTAGGACTTGTCACTACGTGAAAAGCACAAAGGTGAATATTTCAATAGTAAGACTGGACAGCACAGATTaGGATGGCCCATGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: SRTCHYVKSTKVNISIVRLDSTD*DGPWLS
Trigger: AGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAG...TCTTACTATTGAAATATTCACCTTTGTGCTTTTCACGTAGTGACAAGTCCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CCA 90 bp CAAGGCCACATAATATGCTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTTTGTTCCACCTTTATTaGAACCAGCAGATCTGGCAC +
Preference number: 4 (lower is better)
Translates to: QGHIICLSPTSIIKQAYCLFHLY*NQQIWH
Trigger: GTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAA...ACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CCA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTACACTGCCAGTTTCTTaGGTGGTGTCTGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLTLPVS*VVSEEV
Trigger: AACTTCTTCAGACACCACCCAAGAAACTGGCAGTGT...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CCA 90 bp TCTAGGACTTGTCACTACGTGAAAAGCACAAAGGTGAATATTTCAATAGTAAGATTGTTCCACCTTTATTaGAACCAGCAGATCTGGCAC +
Preference number: 4 (lower is better)
Translates to: SRTCHYVKSTKVNISIVRLFHLY*NQQIWH
Trigger: GTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAA...TCTTACTATTGAAATATTCACCTTTGTGCTTTTCACGTAGTGACAAGTCCTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR TCA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTAGATGTTTCTTAGAATaGATGTACAGACTGCTGCGA +
Preference number: 4 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLRCFLE*MYRLLR
Trigger: TCGCAGCAGTCTGTACATTCATTCTAAGAAACATCT...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS GCA 90 bp TCTTGGCGCCGGCTGTGCTGCCGCACCACGTGTGCCTTCATGCTATaGTTGGAGGTGAAGAGTCGGTTGCAGCTGGACACTGGGCAGCGG +
Preference number: 5 (lower is better)
Translates to: SWRRLCCRTTCAFML*LEVKSRLQLDTGQR
Trigger: CCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTACGGTGGTGAACTTCTaGCCGCAGCCGCCCACCGGG +
Preference number: 5 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATTVVNF*PQPPTG
Trigger: CCCGGTGGGCGGCTGCGGCAAGAAGTTCACCACCGT...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS GCA 90 bp CCTTCACCTGAGGGGTCATCCTGCAGAACAGGGATCTGGACACACTaGAGCCCAGCTGCAGGGGCTGGCACTGTCAGACCTCCACTGGGT +
Preference number: 5 (lower is better)
Translates to: PSPEGSSCRTGIWTH*SPAAGAGTVRPPLG
Trigger: ACCCAGTGGAGGTCTGACAGTGCCAGCCCCTGCAGCTGGGCTGCAGTGTGTCCAGATCCCTGTTCTGCAGGATGACCCCTCAGGTGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 90 bp GGCTGTGCTGCCGCACCACGTGTGCCTTCATGCTATGCTTGGAGGTaGAGAGTCGGTTGCAGCTGGACACTGGGCAGCGGCTTTTCGGAG +
Preference number: 5 (lower is better)
Translates to: GCAAAPRVPSCYAWR*RVGCSWTLGSGFSE
Trigger: CTCCGAAAAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS GCA 90 bp GGGGTCATCCTGCAGAACAGGGATCTGGACACACTGCAGCCCAGCTaGAGGGGCTGGCACTGTCAGACCTCCACTGGGTACCATGAGAGT +
Preference number: 5 (lower is better)
Translates to: GVILQNRDLDTLQPS*RGWHCQTSTGYHES
Trigger: ACTCTCATGGTACCCAGTGGAGGTCTGACAGTGCCAGCCCCTGCAGCTGGGCTGCAGTGTGTCCAGATCCCTGTTCTGCAGGATGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp CCTTTTGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTCCATCCAGCGGGCACTaGAAGGGCCGCCGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: PFVGSSTQVASRENSCPVPSSGH*KGRRPW
Trigger: CCAGGGCCGGCGGCCCTTCAAGTGCCCGCTGGATGG...AACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACAAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTGAGGTGAAGAGTCGGTaGCAGCTGGACACTGGGCAG +
Preference number: 5 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATEVKSR*QLDTGQ
Trigger: CTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTC...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 90 bp GCCCAGCTGCAGGGGCTGGCACTGTCAGACCTCCACTGGGTACCATaGGAGTTCCACAGAAACAACTGTGCTGGCCTGAGTGGACATGAG +
Preference number: 5 (lower is better)
Translates to: AQLQGLALSDLHWVP*EFHRNNCAGLSGHE
Trigger: CTCATGTCCACTCAGGCCAGCACAGTTGTTTCTGTGGAACTCTCATGGTACCCAGTGGAGGTCTGACAGTGCCAGCCCCTGCAGCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS GCA 90 bp CTGAGGTACAAGATCTTGGCGCCGGCTGTGCTGCCGCACCACGTGTaGCTTCATGCTATGCTTGGAGGTGAAGAGTCGGTTGCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: LRYKILAPAVLPHHV*LHAMLGGEESVAAG
Trigger: TCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGATCTTGTACCTCAG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CCA 90 bp CCTGTGCTCATGGCCTGTGAATCATCTGCACTGAAGCTGCCTGGTTaGAGAACCGTGGCCGATGTCCCAAGAACAAGAGGACGCCGGGAG +
Preference number: 5 (lower is better)
Translates to: PVLMACESSALKLPG*RTVADVPRTRGRRE
Trigger: CTCCCGGCGTCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203493.2
CDS CCA 90 bp CCTGGCCTCTCTGTAGAGCTGGACAGCACAGATTGGGATGGCCCATaGCTTTCTTTCTGCCCCTGGACCACATCTGGGACAGGAGACAAG +
Preference number: 5 (lower is better)
Translates to: PGLSVELDSTDWDGP*LSFCPWTTSGTGDK
Trigger: CTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTACAGAGAGGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp ACACACACACGGCATGGGCAGGGTGCCTATCACAGAGGGCAACCTGTGGAGGCAGCTGCGAGATCTATGTaGGTGAGCTCACTTTGGCCT +
Preference number: 5 (lower is better)
Translates to: THTRHGQGAYHRGQPVEAAARSM*VSSLWP
Trigger: AGGCCAAAGTGAGCTCACCAACATAGATCTCGCAGC...TGCCTCCACAGGTTGCCCTCTGTGATAGGCACCCTGCCCATGCCGTGTGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 90 bp GGCAGCCTACTGCTCCTGTGCTCATGGCCTGTGAATCATCTGCACTaGAGCTGCCTGGTTGGAGAACCGTGGCCGATGTCCCAAGAACAA +
Preference number: 5 (lower is better)
Translates to: GSLLLLCSWPVNHLH*SCLVGEPWPMSQEQ
Trigger: TTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp TGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTTCAGATGGTGGGAGTTGAGCTaGGCGTGTGTGGGGAAGCGC +
Preference number: 5 (lower is better)
Translates to: CREQHPGSIQRKLMPSFRWWELS*ACVGKR
Trigger: GCGCTTCCCCACACACGCCAAGCTCAACTCCCACCA...TCTGAAACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp CATCCTGTCACTTGCAGACACACGCTGGAGGCTGTGGGAGCTGCTGGAGCAACTGGTGCTGTCAAGTTATaGCTGGGGGTCAAAGCTGGA +
Preference number: 5 (lower is better)
Translates to: HPVTCRHTLEAVGAAGATGAVKL*LGVKAG
Trigger: TCCAGCTTTGACCCCCAGCAATAACTTGACAGCACC...AGTTGCTCCAGCAGCTCCCACAGCCTCCAGCGTGTGTCTGCAAGTGACAGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS GCA 90 bp GTAGAGCTGGACAGCACAGATTGGGATGGCCCATGGCTTTCTTTCTaGCCCTGGACCACATCTGGGACAGGAGACAAGTCTTGTTCCACC +
Preference number: 5 (lower is better)
Translates to: VELDSTDWDGPWLSF*PWTTSGTGDKSCST
Trigger: GGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp CCTTTTGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTACCAGGAGGTCCTGGTaGTGGATGGTGACCGTGCCT +
Preference number: 5 (lower is better)
Translates to: PFVGSSTQVASRENSCPVTRRSW*WMVTVP
Trigger: AGGCACGGTCACCATCCACAACCAGGACCTCCTGGT...AACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACAAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp TCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTTGGTGGGAGTTGAGCTaGGCGTGTGTGGGGAAGCGC +
Preference number: 5 (lower is better)
Translates to: SRLKVKVRLPDYCPGSICWWELS*ACVGKR
Trigger: GCGCTTCCCCACACACGCCAAGCTCAACTCCCACCA...ACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp GGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGACGCCTTCATGCTATGCTaGGAGGTGAAGAGTCGGTTG +
Preference number: 5 (lower is better)
Translates to: GSISRLLAGGRPANHLSDAFMLC*EVKSRL
Trigger: CAACCGACTCTTCACCTCCAAGCATAGCATGAAGGC...GTCTGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp CAAAGACTGCTGCACACAGGCCGCCTTCACACAGCTATCCTCGAGATAATGGCCGAGGACTGTCCAAACTaGGAGGCATATCACCGTGGG +
Preference number: 5 (lower is better)
Translates to: QRLLHTGRLHTAILEIMAEDCPN*EAYHRG
Trigger: CCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTC...GGCCATTATCTCGAGGATAGCTGTGTGAAGGCGGCCTGTGTGCAGCAGTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS TCA 90 bp CCAGGTGCTGTCAAGTTATTGCTGGGGGTCAAAGCTGGAGAGTCTTaGTTCAAGTTCCTCACAGGCAGAGCCACCAGGCAGCCTACTGCT +
Preference number: 5 (lower is better)
Translates to: PGAVKLLLGVKAGES*FKFLTGRATRQPTA
Trigger: AGCAGTAGGCTGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAGCACCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 90 bp GCACAGCACCCTTCCACAGGGCATTCGAATGGCTTTGTTCCCAGGTaGGTGATACTGTGGCCCTTCAGATGCTCTGCTCTAGTGAATGAC +
Preference number: 5 (lower is better)
Translates to: AQHPSTGHSNGFVPR*VILWPFRCSALVND
Trigger: GTCATTCACTAGAGCAGAGCATCTGAAGGGCCACAGTATCACCCACCTGGGAACAAAGCCATTCGAATGCCCTGTGGAAGGGTGCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CCA 90 bp CCTGTGCTCATGGCCTGTGAATCATCTGCACTGAAGCTGCCTGGTTaGAGAACCGTGGCCGATGTCCCAAGAACAAGAGGACTGTCCAAA +
Preference number: 5 (lower is better)
Translates to: PVLMACESSALKLPG*RTVADVPRTRGLSK
Trigger: TTTGGACAGTCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp TCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTGACCAGGAGGTCCTGGTaGTGGATGGTGACCGTGCCT +
Preference number: 5 (lower is better)
Translates to: SKSKSGFQTIAQAPSVLLTRRSW*WMVTVP
Trigger: AGGCACGGTCACCATCCACAACCAGGACCTCCTGGT...CAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp GAGGCTATAGACTTAACTGCTCCACATGGTTCTGTCTTGCTTTGTCTTTTCATTCCATCCAGCGGGCACTaGAAGGGCCGCCGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: EAIDLTAPHGSVLLCLFIPSSGH*KGRRPW
Trigger: CCAGGGCCGGCGGCCCTTCAAGTGCCCGCTGGATGG...AATGAAAAGACAAAGCAAGACAGAACCATGTGGAGCAGTTAAGTCTATAGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTGAGGTGAAGAGTCGGTaGCAGCTGGACACTGGGCAG +
Preference number: 5 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLEVKSR*QLDTGQ
Trigger: CTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTC...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCGCTGGACAGCACAGATaGGGATGGCCCATGGCTTTC +
Preference number: 5 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVAGQHR*GWPMAF
Trigger: GAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGC...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 90 bp TGGTGTGGTACCAGGTGCTGTCAAGTTATTGCTGGGGGTCAAAGCTaGAGAGTCTTGATTCAAGTTCCTCACAGGCAGAGCCACCAGGCA +
Preference number: 5 (lower is better)
Translates to: WCGTRCCQVIAGGQS*RVLIQVPHRQSHQA
Trigger: TGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAGCACCTGGTACCACACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 90 bp CTGGACCACATCTGGGACAGGAGACAAGTCTTGTTCCACCTTTATTaGAACCAGCAGATCTGGCACACTGCCAGTTTCTTGGGTGGTGTC +
Preference number: 5 (lower is better)
Translates to: LDHIWDRRQVLFHLY*NQQIWHTASFLGGV
Trigger: GACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 90 bp CTGGACAGCACAGATTGGGATGGCCCATGGCTTTCTTTCTGCCCCTaGACCACATCTGGGACAGGAGACAAGTCTTGTTCCACCTTTATT +
Preference number: 5 (lower is better)
Translates to: LDSTDWDGPWLSFCP*TTSGTGDKSCSTFI
Trigger: AATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp GAGGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGGAACGAGTGGATCCATaGGTCCTAAGGAGTTATTGT +
Preference number: 5 (lower is better)
Translates to: EVLLAGYWQAAGQPITFQERVDP*VLRSYC
Trigger: ACAATAACTCCTTAGGACCAATGGATCCACTCGTTC...CTGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 90 bp AATGGTGAGGATCCCAGAGTTCAGTGCTTCATCCGACCCAGCTGTTaGACTGCTGCTATTAGCAGGTGTGTCAGAGAAAAGTGCTGCGAG +
Preference number: 5 (lower is better)
Translates to: NGEDPRVQCFIRPSC*TAAISRCVREKCCE
Trigger: CTCGCAGCACTTTTCTCTGACACACCTGCTAATAGCAGCAGTTCAACAGCTGGGTCGGATGAAGCACTGAACTCTGGGATCCTCACCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp TCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTGGGTGCTGTCAAGTTATaGCTGGGGGTCAAAGCTGGA +
Preference number: 5 (lower is better)
Translates to: SKSKSGFQTIAQAPSVLLGAVKL*LGVKAG
Trigger: TCCAGCTTTGACCCCCAGCAATAACTTGACAGCACC...CAGAAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp AGCATCCAGAGAAAACTCATGCCCAGTTTCAGAGCTCTCCCCAAATCCAAGAAAGCTGGACAGCACAGATaGGGATGGCCCATGGCTTTC +
Preference number: 5 (lower is better)
Translates to: SIQRKLMPSFRALPKSKKAGQHR*GWPMAF
Trigger: GAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGC...TTTCTTGGATTTGGGGAGAGCTCTGAAACTGGGCATGAGTTTTCTCTGGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp AGAGGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCAGCAGGCTTTGTCATATaGTTTATTGCACCCAGGAAA +
Preference number: 5 (lower is better)
Translates to: RGSISRLLAGGRPANHLSAGFVI*FIAPRK
Trigger: TTTCCTGGGTGCAATAAACAATATGACAAAGCCTGC...TGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp TTCCCGAGGGCCTCTCAGACCTGTTGGGCATGTTCAGACATGCTGGTGATTTGGGCAGGCTTTGTCATATaGTTTATTGCACCCAGGAAA +
Preference number: 5 (lower is better)
Translates to: FPRASQTCWACSDMLVIWAGFVI*FIAPRK
Trigger: TTTCCTGGGTGCAATAAACAATATGACAAAGCCTGC...CCAAATCACCAGCATGTCTGAACATGCCCAACAGGTCTGAGAGGCCCTCGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp GGAAGTGAAATGAGTCTCTGCCCACCCACAGCAGCTGAGGTCTTGAAGCACAGCTTCAGTCGGCAGGCTTaGTCATATTGTTTATTGCAC +
Preference number: 5 (lower is better)
Translates to: GSEMSLCPPTAAEVLKHSFSRQA*SYCLLH
Trigger: GTGCAATAAACAATATGACAAAGCCTGCCGACTGAA...GCTGTGCTTCAAGACCTCAGCTGCTGTGGGTGGGCAGAGACTCATTTCACTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp AGAGGTTCTATTAGCAGGCTACTGGCAGGCGGCAGGCCAGCCAATCACCTTTCATTGTGTCTTAGAAGTTaGGACATACTGGTGAAGGTC +
Preference number: 5 (lower is better)
Translates to: RGSISRLLAGGRPANHLSLCLRS*DILVKV
Trigger: GACCTTCACCAGTATGTCCAAACTTCTAAGACACAA...TGAAAGGTGATTGGCTGGCCTGCCGCCTGCCAGTAGCCTGCTAATAGAACCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp CAAAGACTGCTGCACACAGGCCGCCTTCACACAGCTATCCTCGAGATAATGGCCTTGTGTCTTAGAAGTTaGGACATACTGGTGAAGGTC +
Preference number: 5 (lower is better)
Translates to: QRLLHTGRLHTAILEIMALCLRS*DILVKV
Trigger: GACCTTCACCAGTATGTCCAAACTTCTAAGACACAA...GGCCATTATCTCGAGGATAGCTGTGTGAAGGCGGCCTGTGTGCAGCAGTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp CTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCTGCATAGACAGGATTCATGCCTTCATGCTATGCTaGGAGGTGAAGAGTCGGTTG +
Preference number: 5 (lower is better)
Translates to: LHLSFCTPERTVCIDRIHAFMLC*EVKSRL
Trigger: CAACCGACTCTTCACCTCCAAGCATAGCATGAAGGC...ATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp TGTAGGGAGCAGCACCCAGGTAGCATCCAGAGAAAACTCATGCCCAGTTTCAGACAAAGCTGGAGAGTCTaGATTCAAGTTCCTCACAGG +
Preference number: 5 (lower is better)
Translates to: CREQHPGSIQRKLMPSFRQSWRV*IQVPHR
Trigger: CCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTG...TCTGAAACTGGGCATGAGTTTTCTCTGGATGCTACCTGGGTGCTGCTCCCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS CCA 90 bp CCTTTATTGGAACCAGCAGATCTGGCACACTGCCAGTTTCTTGGGTaGTGTCTGAAGAAGTTGGTGTGGTACCAGGTGCTGTCAAGTTAT +
Preference number: 5 (lower is better)
Translates to: PLLEPADLAHCQFLG*CLKKLVWYQVLSSY
Trigger: ATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp GGGCAGTGTTGGCAGCAAGTGCCACACTGTCATCTGCCAATACAAAAAGTATTAGCTGCGAGATCTATGTaGGTGAGCTCACTTTGGCCT +
Preference number: 5 (lower is better)
Translates to: GQCWQQVPHCHLPIQKVLAARSM*VSSLWP
Trigger: AGGCCAAAGTGAGCTCACCAACATAGATCTCGCAGC...TAATACTTTTTGTATTGGCAGATGACAGTGTGGCACTTGCTGCCAACACTGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCGAACGAGTGGATCCATaGGTCCTAAGGAGTTATTGT +
Preference number: 5 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVERVDP*VLRSYC
Trigger: ACAATAACTCCTTAGGACCAATGGATCCACTCGTTC...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp GTCTCCACGGGGAAGACCAAATCATTCTGTGAAAACACACAAGGCCACATAATAGAGGACTGTCCAAACTaGGAGGCATATCACCGTGGG +
Preference number: 5 (lower is better)
Translates to: VSTGKTKSFCENTQGHIIEDCPN*EAYHRG
Trigger: CCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTC...TATTATGTGGCCTTGTGTGTTTTCACAGAATGATTTGGTCTTCCCCGTGGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCAAAGCTGGAGAGTCTaGATTCAAGTTCCTCACAGG +
Preference number: 5 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLQSWRV*IQVPHR
Trigger: CCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTG...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp GACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCCTTCTTGTTCCACCTTTATaGGAACCAGCAGATCTGGCA +
Preference number: 5 (lower is better)
Translates to: DSKSKSGFQTIAQAPSVLLVPPL*EPADLA
Trigger: TGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAG...AAGGACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp CCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCCCAGGCTCCATCTGTCTTCAGTCGGCAGGCTTaGTCATATTGTTTATTGCAC +
Preference number: 5 (lower is better)
Translates to: PDSKSKSGFQTIAQAPSVFSRQA*SYCLLH
Trigger: GTGCAATAAACAATATGACAAAGCCTGCCGACTGAA...GACAGATGGAGCCTGGGCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp CTCCATCTGTCCTTCTGCACACCAGAAAGAACCGTCTGCATAGACAGGATTCATCTTGTTCCACCTTTATaGGAACCAGCAGATCTGGCA +
Preference number: 5 (lower is better)
Translates to: LHLSFCTPERTVCIDRIHLVPPL*EPADLA
Trigger: TGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAG...ATGAATCCTGTCTATGCAGACGGTTCTTTCTGGTGTGCAGAAGGACAGATGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp TGTAAGAATGTCAATTCCAGACTCAAAGTCAAAGTCAGGCTTCCAGACTATTGCGCTGGACAGCACAGATaGGGATGGCCCATGGCTTTC +
Preference number: 5 (lower is better)
Translates to: CKNVNSRLKVKVRLPDYCAGQHR*GWPMAF
Trigger: GAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGC...GCAATAGTCTGGAAGCCTGACTTTGACTTTGAGTCTGGAATTGACATTCTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp ACTAGATGTTTTGCCAGAGCTCAACCTGACTTTGGCTTCACTACAGCATACAGTCTCGGTAATCAGTTCTaGCTGAGCCCCCACTTTCCA +
Preference number: 5 (lower is better)
Translates to: TRCFARAQPDFGFTTAYSLGNQF*LSPHFP
Trigger: TGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAG...ACTGTATGCTGTAGTGAAGCCAAAGTCAGGTTGAGCTCTGGCAAAACATCTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp CAAGGCCACATAATATGCTTATCTCCAACCTCAATCATAAAACAAGCCTATTGTGCAGGAAAAGAGCTCTaGCTCCCTGAAGTGGGCTCG +
Preference number: 5 (lower is better)
Translates to: QGHIICLSPTSIIKQAYCAGKEL*LPEVGS
Trigger: CGAGCCCACTTCAGGGAGCAAGAGCTCTTTTCCTGC...ACAATAGGCTTGTTTTATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTGCAGGAAAAGAGCTCTaGCTCCCTGAAGTGGGCTCG +
Preference number: 5 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLAGKEL*LPEVGS
Trigger: CGAGCCCACTTCAGGGAGCAAGAGCTCTTTTCCTGC...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS-3UTR CAA 90 bp TCTAGGACTTGTCACTACGTGAAAAGCACAAAGGTGAATATTTCAATAGTAAGAGGTGCTGTCAAGTTATaGCTGGGGGTCAAAGCTGGA +
Preference number: 5 (lower is better)
Translates to: SRTCHYVKSTKVNISIVRGAVKL*LGVKAG
Trigger: TCCAGCTTTGACCCCCAGCAATAACTTGACAGCACC...TCTTACTATTGAAATATTCACCTTTGTGCTTTTCACGTAGTGACAAGTCCTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS-3UTR CAA 90 bp TTCTGTGAAAACACACAAGGCCACATAATATGCTTATCTCCAACCTCAATCATACTTGTTCCACCTTTATaGGAACCAGCAGATCTGGCA +
Preference number: 5 (lower is better)
Translates to: FCENTQGHIICLSPTSIILVPPL*EPADLA
Trigger: TGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAG...TATGATTGAGGTTGGAGATAAGCATATTATGTGGCCTTGTGTGTTTTCACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS-3UTR CAA 90 bp TTCCATTGTAGACTGAGGAAAGTCAGACTCTCTCTAGGAATCTTTAAATTACTTCAAAGCTGGAGAGTCTaGATTCAAGTTCCTCACAGG +
Preference number: 5 (lower is better)
Translates to: FHCRLRKVRLSLGIFKLLQSWRV*IQVPHR
Trigger: CCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTG...AAGTAATTTAAAGATTCCTAGAGAGAGTCTGACTTTCCTCAGTCTACAATGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113539.8
CDS CCA 72 bp GAGCTGCGCCGGGGGCGGCGGCCGGGACCTGTTCCGTaGGGCTCGCGCCCGAATCGGGCTCGGCCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: ELRRGRRPGPVP*GSRPNRARPPP
Trigger: AGGAGGAGGCCGAGCCCGATTCGGGCGCGAGCCCCACGGAACAGGTCCCGGCCGCCGCCCCCGGCGCAGCTC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS TCA 72 bp GTGGGGCTCGCGCCCGAATCGGGCTCGGCCTCCTCCTaGCCATGGGTGTCGGCCGCGCGCGGCACTTCCAGC +
Preference number: 6 (lower is better)
Translates to: VGLAPESGSASS*PWVSAARGTSS
Trigger: GCTGGAAGTGCCGCGCGCGGCCGACACCCATGGTCAGGAGGAGGCCGAGCCCGATTCGGGCGCGAGCCCCAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CAA 72 bp AAGACGCCGCGGTCGAAGCGCACCAGGAGGTCCTGGTaGTGGATGGTGACCGTGCCTGCCAGAGCTGCGCCG +
Preference number: 6 (lower is better)
Translates to: KTPRSKRTRRSW*WMVTVPARAAP
Trigger: CGGCGCAGCTCTGGCAGGCACGGTCACCATCCACAACCAGGACCTCCTGGTGCGCTTCGACCGCGGCGTCTT
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CCA 72 bp GTGAAGACGCCGCGGTCGAAGCGCACCAGGAGGTCCTaGTTGTGGATGGTGACCGTGCCTGCCAGAGCTGCG +
Preference number: 6 (lower is better)
Translates to: VKTPRSKRTRRS*LWMVTVPARAA
Trigger: CGCAGCTCTGGCAGGCACGGTCACCATCCACAACCAGGACCTCCTGGTGCGCTTCGACCGCGGCGTCTTCAC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CAA 90 bp TGGCGCCGGCTGTGCTGCCGCACCACGTGTGCCTTCATGCTATGCTaGGAGGTGAAGAGTCGGTTGCAGCTGGACACTGGGCAGCGGCTT +
Preference number: 6 (lower is better)
Translates to: WRRLCCRTTCAFMLC*EVKSRLQLDTGQRL
Trigger: AAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS TCA 72 bp GCCGCACCACGTGTGCCTTCATGCTATGCTTGGAGGTaGAGAGTCGGTTGCAGCTGGACACTGGGCAGCGGC +
Preference number: 6 (lower is better)
Translates to: AAPRVPSCYAWR*RVGCSWTLGSG
Trigger: GCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS GCA 72 bp CTGCAGAACAGGGATCTGGACACACTGCAGCCCAGCTaGAGGGGCTGGCACTGTCAGACCTCCACTGGGTAC +
Preference number: 6 (lower is better)
Translates to: LQNRDLDTLQPS*RGWHCQTSTGY
Trigger: GTACCCAGTGGAGGTCTGACAGTGCCAGCCCCTGCAGCTGGGCTGCAGTGTGTCCAGATCCCTGTTCTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS CCA 72 bp GCCCCTGGCCTCTCTGTAGAGCTGGACAGCACAGATTaGGATGGCCCATGGCTTTCTTTCTGCCCCTGGACC +
Preference number: 6 (lower is better)
Translates to: APGLSVELDSTD*DGPWLSFCPWT
Trigger: GGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTACAGAGAGGCCAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CAA 90 bp CGCACCACGTGTGCCTTCATGCTATGCTTGGAGGTGAAGAGTCGGTaGCAGCTGGACACTGGGCAGCGGCTTTTCGGAGTACCCACGTCC +
Preference number: 6 (lower is better)
Translates to: RTTCAFMLCLEVKSR*QLDTGQRLFGVPTS
Trigger: GGACGTGGGTACTCCGAAAAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS TCA 72 bp AGACTGCCTGTGCCAGCACTGAGCTCTGAGTCCTTCTaGGCCCCTGGCCTCTCTGTAGAGCTGGACAGCACA +
Preference number: 6 (lower is better)
Translates to: RLPVPALSSESF*APGLSVELDST
Trigger: TGTGCTGTCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGACTCAGAGCTCAGTGCTGGCACAGGCAGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CAA 72 bp CTGTGCTGCCGCACCACGTGTGCCTTCATGCTATGCTaGGAGGTGAAGAGTCGGTTGCAGCTGGACACTGGG +
Preference number: 6 (lower is better)
Translates to: LCCRTTCAFMLC*EVKSRLQLDTG
Trigger: CCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS GCA 72 bp AAGATCTTGGCGCCGGCTGTGCTGCCGCACCACGTGTaGCTTCATGCTATGCTTGGAGGTGAAGAGTCGGTT +
Preference number: 6 (lower is better)
Translates to: KILAPAVLPHHV*LHAMLGGEESV
Trigger: AACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGATCTT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS GCA 72 bp TACCTGTGCAGTCTCCAGTCCAGCAAAACCTCCAGGTaGTGGAAGCACCTCCTGGAGGACGTAGACAGGCAG +
Preference number: 6 (lower is better)
Translates to: YLCSLQSSKTSR*WKHLLEDVDRQ
Trigger: CTGCCTGTCTACGTCCTCCAGGAGGTGCTTCCAGCACCTGGAGGTTTTGCTGGACTGGAGACTGCACAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 72 bp CACCAGGCAGCCTACTGCTCCTGTGCTCATGGCCTGTaGATCATCTGCACTGAAGCTGCCTGGTTGGAGAAC +
Preference number: 6 (lower is better)
Translates to: HQAAYCSCAHGL*IICTEAAWLEN
Trigger: GTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCACAGGAGCAGTAGGCTGCCTGGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS TCA 72 bp CAGGGGCTGGCACTGTCAGACCTCCACTGGGTACCATaGGAGTTCCACAGAAACAACTGTGCTGGCCTGAGT +
Preference number: 6 (lower is better)
Translates to: QGLALSDLHWVP*EFHRNNCAGLS
Trigger: ACTCAGGCCAGCACAGTTGTTTCTGTGGAACTCTCATGGTACCCAGTGGAGGTCTGACAGTGCCAGCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS CAA 72 bp TGTGCCTTCATGCTATGCTTGGAGGTGAAGAGTCGGTaGCAGCTGGACACTGGGCAGCGGCTTTTCGGAGTA +
Preference number: 6 (lower is better)
Translates to: CAFMLCLEVKSR*QLDTGQRLFGV
Trigger: TACTCCGAAAAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCATAGCATGAAGGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CAA 90 bp GGAGAACCGTGGCCGATGTCCCAAGAACAAGAGGACTGTCCAAACTaGGAGGCATATCACCGTGGGCCACTAGAACGAGTGGATCCATTG +
Preference number: 6 (lower is better)
Translates to: GEPWPMSQEQEDCPN*EAYHRGPLERVDPL
Trigger: CAATGGATCCACTCGTTCTAGTGGCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CAA 90 bp ACCAGGTGCTGTCAAGTTATTGCTGGGGGTCAAAGCTGGAGAGTCTaGATTCAAGTTCCTCACAGGCAGAGCCACCAGGCAGCCTACTGC +
Preference number: 6 (lower is better)
Translates to: TRCCQVIAGGQSWRV*IQVPHRQSHQAAYC
Trigger: GCAGTAGGCTGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCCAGCAATAACTTGACAGCACCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 72 bp CCTTCCACAGGGCATTCGAATGGCTTTGTTCCCAGGTaGGTGATACTGTGGCCCTTCAGATGCTCTGCTCTA +
Preference number: 6 (lower is better)
Translates to: PSTGHSNGFVPR*VILWPFRCSAL
Trigger: TAGAGCAGAGCATCTGAAGGGCCACAGTATCACCCACCTGGGAACAAAGCCATTCGAATGCCCTGTGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CCA 72 bp ATGGCCTGTGAATCATCTGCACTGAAGCTGCCTGGTTaGAGAACCGTGGCCGATGTCCCAAGAACAAGAGGA +
Preference number: 6 (lower is better)
Translates to: MACESSALKLPG*RTVADVPRTRG
Trigger: TCCTCTTGTTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 72 bp GAACCAGCAGATCTGGCACACTGCCAGTTTCTTGGGTaGTGTCTGAAGAAGTTGGTGTGGTACCAGGTGCTG +
Preference number: 6 (lower is better)
Translates to: EPADLAHCQFLG*CLKKLVWYQVL
Trigger: CAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 72 bp ACAGATTGGGATGGCCCATGGCTTTCTTTCTGCCCCTaGACCACATCTGGGACAGGAGACAAGTCTTGTTCC +
Preference number: 6 (lower is better)
Translates to: TDWDGPWLSFCP*TTSGTGDKSCS
Trigger: GGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCATCCCAATCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 72 bp TGGCCCATGGCTTTCTTTCTGCCCCTGGACCACATCTaGGACAGGAGACAAGTCTTGTTCCACCTTTATTGG +
Preference number: 6 (lower is better)
Translates to: WPMAFFLPLDHI*DRRQVLFHLYW
Trigger: CCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGCCATGGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CAA 90 bp GCAGATCTGGCACACTGCCAGTTTCTTGGGTGGTGTCTGAAGAAGTaGGTGTGGTACCAGGTGCTGTCAAGTTATTGCTGGGGGTCAAAG +
Preference number: 6 (lower is better)
Translates to: ADLAHCQFLGWCLKK*VWYQVLSSYCWGSK
Trigger: CTTTGACCCCCAGCAATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CAA 90 bp GCTTTCTTTCTGCCCCTGGACCACATCTGGGACAGGAGACAAGTCTaGTTCCACCTTTATTGGAACCAGCAGATCTGGCACACTGCCAGT +
Preference number: 6 (lower is better)
Translates to: AFFLPLDHIWDRRQV*FHLYWNQQIWHTAS
Trigger: ACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAAAGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CAA 90 bp CTGCTATTAGCAGGTGTGTCAGAGAAAAGTGCTGCGAGATCTATGTaGGTGAGCTCACTTTGGCCTGGGCTACTCAGTTCACTGCTGGGT +
Preference number: 6 (lower is better)
Translates to: LLLAGVSEKSAARSM*VSSLWPGLLSSLLG
Trigger: ACCCAGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTCACCAACATAGATCTCGCAGCACTTTTCTCTGACACACCTGCTAATAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS TCA 72 bp CAGATCTGGCACACTGCCAGTTTCTTGGGTGGTGTCTaGAGAAGTTGGTGTGGTACCAGGTGCTGTCAAGTT +
Preference number: 6 (lower is better)
Translates to: QIWHTASFLGGV*RSWCGTRCCQV
Trigger: AACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS TCA 72 bp AACAACTGTGCTGGCCTGAGTGGACATGAGGAGGGTTaGTCGTGCCACCTTTTACTTTCCTGTGAGCAGAGT +
Preference number: 6 (lower is better)
Translates to: NNCAGLSGHEEG*SCHLLLSCEQS
Trigger: ACTCTGCTCACAGGAAAGTAAAAGGTGGCACGATCAACCCTCCTCATGTCCACTCAGGCCAGCACAGTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 72 bp GTTCCACAGAAACAACTGTGCTGGCCTGAGTGGACATaGGGAGGGTTGATCGTGCCACCTTTTACTTTCCTG +
Preference number: 6 (lower is better)
Translates to: VPQKQLCWPEWT*GGLIVPPFTFL
Trigger: CAGGAAAGTAAAAGGTGGCACGATCAACCCTCCTCATGTCCACTCAGGCCAGCACAGTTGTTTCTGTGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS TCA 72 bp TACCATGAGAGTTCCACAGAAACAACTGTGCTGGCCTaGGTGGACATGAGGAGGGTTGATCGTGCCACCTTT +
Preference number: 6 (lower is better)
Translates to: YHESSTETTVLA*VDMRRVDRATF
Trigger: AAAGGTGGCACGATCAACCCTCCTCATGTCCACTCAGGCCAGCACAGTTGTTTCTGTGGAACTCTCATGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075117.10
CDS CCA 72 bp TGCCAGTTTCTTGGGTGGTGTCTGAAGAAGTTGGTGTaGTACCAGGTGCTGTCAAGTTATTGCTGGGGGTCA +
Preference number: 6 (lower is better)
Translates to: CQFLGWCLKKLV*YQVLSSYCWGS
Trigger: TGACCCCCAGCAATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CCA 72 bp ATTGGAACCAGCAGATCTGGCACACTGCCAGTTTCTTaGGTGGTGTCTGAAGAAGTTGGTGTGGTACCAGGT +
Preference number: 6 (lower is better)
Translates to: IGTSRSGTLPVS*VVSEEVGVVPG
Trigger: ACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS TCA 72 bp GATACTGTGGCCCTTCAGATGCTCTGCTCTAGTGAATaGCTTGCCACAACCTTCAACAGGGCAAGTGAACCT +
Preference number: 6 (lower is better)
Translates to: DTVALQMLCSSE*LATTFNRASEP
Trigger: AGGTTCACTTGCCCTGTTGAAGGTTGTGGCAAGTCATTCACTAGAGCAGAGCATCTGAAGGGCCACAGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045740.8
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS TCA 72 bp GATCCCAGAGTTCAGTGCTTCATCCGACCCAGCTGTTaGACTGCTGCTATTAGCAGGTGTGTCAGAGAAAAG +
Preference number: 6 (lower is better)
Translates to: DPRVQCFIRPSC*TAAISRCVREK
Trigger: CTTTTCTCTGACACACCTGCTAATAGCAGCAGTTCAACAGCTGGGTCGGATGAAGCACTGAACTCTGGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
CDS CCA 72 bp ATCTGGGACAGGAGACAAGTCTTGTTCCACCTTTATTaGAACCAGCAGATCTGGCACACTGCCAGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: IWDRRQVLFHLY*NQQIWHTASFL
Trigger: CAAGAAACTGGCAGTGTGCCAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8
ENSMUST00000203493.2
CDS CAA 72 bp ACTAGAACGAGTGGATCCATTGGTCCTAAGGAGTTATaGTTAGTAGGGAGATTCCCTCCCAGAGAAGAGCTC +
Preference number: 6 (lower is better)
Translates to: TRTSGSIGPKEL*LVGRFPPREEL
Trigger: GAGCTCTTCTCTGGGAGGGAATCTCCCTACTAACAATAACTCCTTAGGACCAATGGATCCACTCGTTCTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075117.10
ENSMUST00000113539.8