Pregenerated sensors for ZXDB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073062Ensembl transcript IDs: ENSMUST00000101388.4
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGACTCAAGATGAGAACTGAAATCCCTAAATTGGTAATCCACAGATaGGTTCCTTTGCAAGGCAGCAAGAAACAACTGCAGGCAAGCAAG | + |
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Preference number: 1 (lower is better) Translates to: RLKMRTEIPKLVIHR*VPLQGSKKQLQASK Trigger: CTTGCTTGCCTGCAGTTGTTTCTTGCTGCCTTGCAAAGGAACGCATCTGTGGATTACCAATTTAGGGATTTCAGTTCTCATCTTGAGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR GCA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGAGCAGCAAGAAACAACTaGAGGCAAGCAAGCGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: TVTEKEGRCSKQNKDADRAARNN*RQASAP Trigger: AGGAGCGCTTGCTTGCCTGCAGTTGTTTCTTGCTGC...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR GCA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGAACAGATGCGTTCCTTTaGAAGGCAGCAAGAAACAAC | + |
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Preference number: 2 (lower is better) Translates to: TVTEKEGRCSKQNKDADRTDAFL*KAARNN Trigger: GTTGTTTCTTGCTGCCTTGCAAAGGAACGCATCTGT...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR TCA 90 bp | GTGATTGTAGGAGAACAATTCCATATAGCAGAGGAAAAAGTAACCACAAACAAAACAACAACAACAAAGTaGGCCACAGGGCAGGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: VIVGEQFHIAEEKVTTNKTTTTK*ATGQAG Trigger: CCCTGCCTGCCCTGTGGCTCACTTTGTTGTTGTTGT...TTTGTTTGTGGTTACTTTTTCCTCTGCTATATGGAATTGTTCTCCTACAATCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGATATCAAAGTCCTGAATaGCAATTCTACAATACAGCC | + |
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Preference number: 2 (lower is better) Translates to: TVTEKEGRCSKQNKDADRYQSPE*QFYNTA Trigger: GGCTGTATTGTAGAATTGCCATTCAGGACTTTGATA...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR CAA 90 bp | TCAGATCACAAAGGATATCATCGCCCTCTGCACCTTTATCATATTTaGAAAGAATCAAAGACTCCACAGTCACAGAGAAAGAAGGCCGAT | + |
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Preference number: 2 (lower is better) Translates to: SDHKGYHRPLHLYHI*KESKTPQSQRKKAD Trigger: ATCGGCCTTCTTTCTCTGTGACTGTGGAGTCTTTGATTCTTTCAAAATATGATAAAGGTGCAGAGGGCGATGATATCCTTTGTGATCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR TCA 90 bp | CAAATGGAGAGTTATGTAGATAAGCACATGAACAGTGTTCCCACTTCTGATTTTCTCACAACACTTTATTaGCTGAATACCAATATGGCT | + |
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Preference number: 2 (lower is better) Translates to: QMESYVDKHMNSVPTSDFLTTLY*LNTNMA Trigger: AGCCATATTGGTATTCAGTCAATAAAGTGTTGTGAG...AAAATCAGAAGTGGGAACACTGTTCATGTGCTTATCTACATAACTCTCCATTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR GCA 72 bp | ACAGATGCGTTCCTTTGCAAGGCAGCAAGAAACAACTaGAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCA | + |
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Preference number: 3 (lower is better) Translates to: TDAFLCKAARNN*RQASAPSRTFS Trigger: TGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCAGTTGTTTCTTGCTGCCTTGCAAAGGAACGCATCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR CAA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGACACAGATGCGTTCCTTaGCAAGGCAGCAAGAAACAA | + |
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Preference number: 3 (lower is better) Translates to: TVTEKEGRCSKQNKDADRHRCVP*QGSKKQ Trigger: TTGTTTCTTGCTGCCTTGCAAAGGAACGCATCTGTG...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR CCA 72 bp | CTGGACCCTGAGTTTCTCTCATATCAAAGTCCTGAATaGCAATTCTACAATACAGCCTCCCTAACACCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LDPEFLSYQSPE*QFYNTASLTPA Trigger: TGCTGGTGTTAGGGAGGCTGTATTGTAGAATTGCCATTCAGGACTTTGATATGAGAGAAACTCAGGGTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR-3UTR CAA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGACACAATCAGCAAAATTaGGAAGGAATGTGGCAGATT | + |
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Preference number: 3 (lower is better) Translates to: TVTEKEGRCSKQNKDADRHNQQN*EGMWQI Trigger: AATCTGCCACATTCCTTCCAAATTTTGCTGATTGTG...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR GCA 72 bp | AGCAAACAGAAAATGAAAGGTATACAAGGACTGGAATaGATAGGCCAGGAACTGGACTGTAGAAATAGTAAG | + |
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Preference number: 3 (lower is better) Translates to: SKQKMKGIQGLE*IGQELDCRNSK Trigger: CTTACTATTTCTACAGTCCAGTTCCTGGCCTATGCATTCCAGTCCTTGTATACCTTTCATTTTCTGTTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR CCA 72 bp | TTGTCACTCATAGTCAAAACCAGCTGGAATGTGAGCTaGCTAAACTATAATATGAAACATGCACAGATTCGC | + |
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Preference number: 3 (lower is better) Translates to: LSLIVKTSWNVS*LNYNMKHAQIR Trigger: GCGAATCTGTGCATGTTTCATATTATAGTTTAGCCAGCTCACATTCCAGCTGGTTTTGACTATGAGTGACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR TCA 72 bp | TATAGCAGAGGAAAAAGTAACCACAAACAAATGTACTaGTCAGTGAAGGCTCTTAGCATCACAAAAACAGAA | + |
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Preference number: 3 (lower is better) Translates to: YSRGKSNHKQMY*SVKALSITKTE Trigger: TTCTGTTTTTGTGATGCTAAGAGCCTTCACTGATCAGTACATTTGTTTGTGGTTACTTTTTCCTCTGCTATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR TCA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAACGGCGCGTGGGGGCCTaGCAAGCCAGAGAGGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: CRQASAPSRTFSHLSVIKRRVGA*QAREAG Trigger: CCCGGCCTCTCTGGCTTGTCAGGCCCCCACGCGCCG...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | ACCTCTCCAACACCACAGAGCACAAACTGGACCCTGAGTTTCTCTCATATCAAACTCTTGCCGCAGCCCTaGACCGGGCAGCCGAATGGC | + |
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Preference number: 4 (lower is better) Translates to: TSPTPQSTNWTLSFSHIKLLPQP*TGQPNG Trigger: GCCATTCGGCTGCCCGGTGCAGGGCTGCGGCAAGAG...TTTGATATGAGAGAAACTCAGGGTCCAGTTTGTGCTCTGTGGTGTTGGAGAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR TCA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAACCTGGTTGTGGATGGTaGTGGTGCCCGCGAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: CRQASAPSRTFSHLSVIKPGCGW*WCPRRP Trigger: CGGCCTTCGCGGGCACCATCACCATCCACAACCAGG...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAAAAGGTCTGGCCGCACTaGGCCTCCGGGCACAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: CRQASAPSRTFSHLSVIKKVWPH*ASGHRY Trigger: GTACCTGTGCCCGGAGGCGCAGTGCGGCCAGACCTT...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAACTCCGGCCTGCTCCGTaGCCACGGTTTCTACATCGC | + |
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Preference number: 4 (lower is better) Translates to: CRQASAPSRTFSHLSVIKLRPAP*PRFLHR Trigger: GCGATGTAGAAACCGTGGGCACGGAGCAGGCCGGAG...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAAGTGTGGCTGCGCAGGTaGATCTTGAGCCTGCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: CRQASAPSRTFSHLSVIKVWLRR*ILSLQA Trigger: GGCCTGCAGGCTCAAGATCCACCTGCGCAGCCACAC...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR TCA 90 bp | ACCTCTCCAACACCACAGAGCACAAACTGGACCCTGAGTTTCTCTCATATCAAACCAGGAGGTCCTGGCTaGGGTTGTGCCTTTTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: TSPTPQSTNWTLSFSHIKPGGPG*GCAFWS Trigger: TGACCAAAAGGCACAACCTCAGCCAGGACCTCCTGG...TTTGATATGAGAGAAACTCAGGGTCCAGTTTGTGCTCTGTGGTGTTGGAGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | ACCTCTCCAACACCACAGAGCACAAACTGGACCCTGAGTTTCTCTCATATCAAATGGGCCAGGAGGTCCTaGCTGAGGTTGTGCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: TSPTPQSTNWTLSFSHIKWARRS*LRLCLL Trigger: CAAAAGGCACAACCTCAGCCAGGACCTCCTGGCCCA...TTTGATATGAGAGAAACTCAGGGTCCAGTTTGTGCTCTGTGGTGTTGGAGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAATGTCGTACTGCTTGCTaGAGCCAGGGAAGGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: CRQASAPSRTFSHLSVIKCRTAC*SQGRSR Trigger: CCTGCTCCTTCCCTGGCTGCAGCAAGCAGTACGACA...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | ACCTCTCCAACACCACAGAGCACAAACTGGACCCTGAGTTTCTCTCATATCAAACCCATGGCTTCCTGTTaGGTGGGAGAATCCGAACTG | + |
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Preference number: 4 (lower is better) Translates to: TSPTPQSTNWTLSFSHIKPMASC*VGESEL Trigger: CAGTTCGGATTCTCCCACCCAACAGGAAGCCATGGG...TTTGATATGAGAGAAACTCAGGGTCCAGTTTGTGCTCTGTGGTGTTGGAGAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR TCA 90 bp | ACCTCTCCAACACCACAGAGCACAAACTGGACCCTGAGTTTCTCTCATATCAAATGCTGTGCTTGGACGTaGAGAGCTTGTTACAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TSPTPQSTNWTLSFSHIKCCAWT*RACYRW Trigger: CCACCTGTAACAAGCTCTTCACGTCCAAGCACAGCA...TTTGATATGAGAGAAACTCAGGGTCCAGTTTGTGCTCTGTGGTGTTGGAGAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGATGTTTTCACAGAGGGTaGTGGAGGGGGTCAGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: TVTEKEGRCSKQNKDADRCFHRG*WRGSEL Trigger: AAGCTCTGACCCCCTCCAGCACCCTCTGTGAAAACA...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGAAAGTCAGATTCGGGGTaGACGTTCCACTCGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TVTEKEGRCSKQNKDADRKSDSG*TFHSAL Trigger: CAAAGCCGAGTGGAACGTGCACCCCGAATCTGACTT...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | CAAATGGAGAGTTATGTAGATAAGCACATGAACAGTGTTCCCACTTCTGATTTTACCGCGGCGGAACCGTaGCCAGGCACATCCGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: QMESYVDKHMNSVPTSDFTAAEP*PGTSEN Trigger: GTTCTCGGATGTGCCTGGCCACGGTTCCGCCGCGGT...AAAATCAGAAGTGGGAACACTGTTCATGTGCTTATCTACATAACTCTCCATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR TCA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGAAGATCTGTGTCTTTCTaGGACCCATGGCTTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: TVTEKEGRCSKQNKDADRRSVSF*DPWLPV Trigger: AACAGGAAGCCATGGGTCTCAGAAAGACACAGATCT...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | CAAATGGAGAGTTATGTAGATAAGCACATGAACAGTGTTCCCACTTCTGATTTTTTGGCAGCTTCTAGCTaGGCCAGGAGGTCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QMESYVDKHMNSVPTSDFLAASS*ARRSWL Trigger: CAGCCAGGACCTCCTGGCCCAGCTAGAAGCTGCCAA...AAAATCAGAAGTGGGAACACTGTTCATGTGCTTATCTACATAACTCTCCATTTG 47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | ACCTCTCCAACACCACAGAGCACAAACTGGACCCTGAGTTTCTCTCATATCAAAGCTTGCCCCAAGGAATaGTTGTTGCTGTTATTATCC | + |
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Preference number: 4 (lower is better) Translates to: TSPTPQSTNWTLSFSHIKACPKE*LLLLLS Trigger: GGATAATAACAGCAACAACCATTCCTTGGGGCAAGC...TTTGATATGAGAGAAACTCAGGGTCCAGTTTGTGCTCTGTGGTGTTGGAGAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR CAA 72 bp | GAAATCCCTAAATTGGTAATCCACAGATGCGTTCCTTaGCAAGGCAGCAAGAAACAACTGCAGGCAAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: EIPKLVIHRCVP*QGSKKQLQASK Trigger: CTTGCTTGCCTGCAGTTGTTTCTTGCTGCCTTGCAAAGGAACGCATCTGTGGATTACCAATTTAGGGATTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR GCA 90 bp | GTGATTGTAGGAGAACAATTCCATATAGCAGAGGAAAAAGTAACCACAAACAAACCTTGTCGTACTGCTTaGTGCAGCCAGGGAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: VIVGEQFHIAEEKVTTNKPCRTA*CSQGRS Trigger: GCTCCTTCCCTGGCTGCAGCAAGCAGTACGACAAGG...TTTGTTTGTGGTTACTTTTTCCTCTGCTATATGGAATTGTTCTCCTACAATCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR TCA 90 bp | GTGATTGTAGGAGAACAATTCCATATAGCAGAGGAAAAAGTAACCACAAACAAATCAAGATGCCAGAGTTaGCCAAGGCCGTGTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: VIVGEQFHIAEEKVTTNKSRCQS*PRPCPA Trigger: TGCTGGACACGGCCTTGGTCAACTCTGGCATCTTGA...TTTGTTTGTGGTTACTTTTTCCTCTGCTATATGGAATTGTTCTCCTACAATCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CCA 90 bp | GTGATTGTAGGAGAACAATTCCATATAGCAGAGGAAAAAGTAACCACAAACAAATGGCTTCCTGTTGGGTaGGAGAATCCGAACTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: VIVGEQFHIAEEKVTTNKWLPVG*ENPNWV Trigger: AACCCAGTTCGGATTCTCCCACCCAACAGGAAGCCA...TTTGTTTGTGGTTACTTTTTCCTCTGCTATATGGAATTGTTCTCCTACAATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR CAA 72 bp | AAATTATCTTCTTCTTTTGTGAAGCTATATATAGAGTaGTCACTCATAGTCAAAACCAGCTGGAATGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: KLSSSFVKLYIE*SLIVKTSWNVS Trigger: GCTCACATTCCAGCTGGTTTTGACTATGAGTGACAACTCTATATATAGCTTCACAAAAGAAGAAGATAATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| 3UTR CAA 72 bp | TTTCATAGTGGCAAATTTTTAGTGCATTTCCAAAGTTaGTCATCCATAGACATCTACATGCAAATGCTACTG | + |
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Preference number: 4 (lower is better) Translates to: FHSGKFLVHFQS*SSIDIYMQMLL Trigger: CAGTAGCATTTGCATGTAGATGTCTATGGATGACAAACTTTGGAAATGCACTAAAAATTTGCCACTATGAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS TCA 90 bp | CCTCCTCCGCCAGCGCCGCCGCCTCTGCCGCCGCCGCTGCTCCGGTaGTCGGGCCTCGGCGCCAACCGGTTCAGGCTCGGGCCCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: PPPPAPPPLPPPLLR*SGLGANRFRLGPRP Trigger: GGGCCTGGGCCCGAGCCTGAACCGGTTGGCGCCGAGGCCCGATCACCGGAGCAGCGGCGGCGGCAGAGGCGGCGGCGCTGGCGGAGGAGG 80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS GCA 90 bp | TGCCTCCTCCTCCTCCGCCAGCGCCGCCGCCTCTGCCGCCGCCGCTaGTCCGGTGATCGGGCCTCGGCGCCAACCGGTTCAGGCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: CLLLLRQRRRLCRRR*SGDRASAPTGSGSG Trigger: GCCCGAGCCTGAACCGGTTGGCGCCGAGGCCCGATCACCGGAGCAGCGGCGGCGGCAGAGGCGGCGGCGCTGGCGGAGGAGGAGGAGGCA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS CCA 90 bp | ATGCCAGAGTTGACCAAGGCCGTGTCCAGCACCGCGGCGGAACCGTaGCCAGGCACATCCGAGAACAGAGACACGAGCTCGGCCCCACTG | + |
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Preference number: 5 (lower is better) Translates to: MPELTKAVSSTAAEP*PGTSENRDTSSAPL Trigger: CAGTGGGGCCGAGCTCGTGTCTCTGTTCTCGGATGTGCCTGGCCACGGTTCCGCCGCGGTGCTGGACACGGCCTTGGTCAACTCTGGCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGATTGAGCCTGCAGGCCTaGTCGTACTGCTTGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: TVTEKEGRCSKQNKDADRLSLQA*SYCLLQ Trigger: CTGCAGCAAGCAGTACGACAAGGCCTGCAGGCTCAA...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | ACAGTCACAGAGAAAGAAGGCCGATGTTCGAAACAGAACAAGGATGCTGACAGATTGGACGTGAAGAGCTaGTTACAGGTGGGGACCGGG | + |
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Preference number: 5 (lower is better) Translates to: TVTEKEGRCSKQNKDADRLDVKS*LQVGTG Trigger: CCCGGTCCCCACCTGTAACAAGCTCTTCACGTCCAA...TCTGTCAGCATCCTTGTTCTGTTTCGAACATCGGCCTTCTTTCTCTGTGACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAAACGTTCCACTCGGCTTaGGCTGGGGTCAGTAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: CRQASAPSRTFSHLSVIKTFHSA*AGVSSS Trigger: CGAGCTACTGACCCCAGCCAAAGCCGAGTGGAACGT...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | CAAATGGAGAGTTATGTAGATAAGCACATGAACAGTGTTCCCACTTCTGATTTTGCCCTGGTGAAGGACTaGCCGCAGCCCTCGACGGGA | + |
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Preference number: 5 (lower is better) Translates to: QMESYVDKHMNSVPTSDFALVKD*PQPSTG Trigger: TCCCGTCGAGGGCTGCGGCAAGTCCTTCACCAGGGC...AAAATCAGAAGTGGGAACACTGTTCATGTGCTTATCTACATAACTCTCCATTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAAACCCATGGCTTCCTGTaGGGTGGGAGAATCCGAACT | + |
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Preference number: 5 (lower is better) Translates to: CRQASAPSRTFSHLSVIKTHGFL*GGRIRT Trigger: AGTTCGGATTCTCCCACCCAACAGGAAGCCATGGGT...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | CAAATGGAGAGTTATGTAGATAAGCACATGAACAGTGTTCCCACTTCTGATTTTCTGCGCAGGTGGATCTaGAGCCTGCAGGCCTTGTCG | + |
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Preference number: 5 (lower is better) Translates to: QMESYVDKHMNSVPTSDFLRRWI*SLQALS Trigger: CGACAAGGCCTGCAGGCTCAAGATCCACCTGCGCAG...AAAATCAGAAGTGGGAACACTGTTCATGTGCTTATCTACATAACTCTCCATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | CAAATGGAGAGTTATGTAGATAAGCACATGAACAGTGTTCCCACTTCTGATTTTCTGGGCGTGAGAGAGTaGGCAGCTTCTAGCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: QMESYVDKHMNSVPTSDFLGVRE*AASSWA Trigger: GGCCCAGCTAGAAGCTGCCAACTCTCTCACGCCCAG...AAAATCAGAAGTGGGAACACTGTTCATGTGCTTATCTACATAACTCTCCATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAACTGAGGTTGTGCCTTTaGGTCATGTGGGTCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: CRQASAPSRTFSHLSVIKLRLCL*VMWVFM Trigger: CATGAAGACCCACATGACCAAAAGGCACAACCTCAG...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS-3UTR CAA 90 bp | TGCAGGCAAGCAAGCGCTCCTTCCAGAACATTCTCACATTTGAGTGTGATAAAATGCCCCAAGGAATGGTaGTTGCTGTTATTATCCGCA | + |
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Preference number: 5 (lower is better) Translates to: CRQASAPSRTFSHLSVIKCPKEW*LLLLSA Trigger: TGCGGATAATAACAGCAACAACCATTCCTTGGGGCA...TTTTATCACACTCAAATGTGAGAATGTTCTGGAAGGAGCGCTTGCTTGCCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS GCA 72 bp | CTCCTCCGCCAGCGCCGCCGCCTCTGCCGCCGCCGCTaGTCCGGTGATCGGGCCTCGGCGCCAACCGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LLRQRRRLCRRR*SGDRASAPTGS Trigger: TGAACCGGTTGGCGCCGAGGCCCGATCACCGGAGCAGCGGCGGCGGCAGAGGCGGCGGCGCTGGCGGAGGAG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS CCA 72 bp | TTGACCAAGGCCGTGTCCAGCACCGCGGCGGAACCGTaGCCAGGCACATCCGAGAACAGAGACACGAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: LTKAVSSTAAEP*PGTSENRDTSS Trigger: CGAGCTCGTGTCTCTGTTCTCGGATGTGCCTGGCCACGGTTCCGCCGCGGTGCTGGACACGGCCTTGGTCAA 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS CAA 90 bp | CCCCTCAAGGCCCGAGGCTCGGCCGCTTGCCCCAAGGAATGGTTGTaGCTGTTATTATCCGCAGGGAGACTTCCCGCGAGGCTCGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: PLKARGSAACPKEWL*LLLSAGRLPARLEF Trigger: GAACTCGAGCCTCGCGGGAAGTCTCCCTGCGGATAATAACAGCAACAACCATTCCTTGGGGCAAGCGGCCGAGCCTCGGGCCTTGAGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS CAA 72 bp | GCCCGAGGCTCGGCCGCTTGCCCCAAGGAATGGTTGTaGCTGTTATTATCCGCAGGGAGACTTCCCGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: ARGSAACPKEWL*LLLSAGRLPAR Trigger: CCTCGCGGGAAGTCTCCCTGCGGATAATAACAGCAACAACCATTCCTTGGGGCAAGCGGCCGAGCCTCGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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| CDS CCA 72 bp | CTCAAGGCCCGAGGCTCGGCCGCTTGCCCCAAGGAATaGTTGTTGCTGTTATTATCCGCAGGGAGACTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LKARGSAACPKE*LLLLLSAGRLP Trigger: GGGAAGTCTCCCTGCGGATAATAACAGCAACAACCATTCCTTGGGGCAAGCGGCCGAGCCTCGGGCCTTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101388.4 |
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