Pregenerated sensors for ZSWIM7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014243Ensembl transcript IDs: ENSMUST00000072916.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CAACAATACTTAATTCTCCCAAGGGACATTTCTACCTaGAGGGCTCAGAGGCTGGCTAATATTAAGACCATA | + |
|
Preference number: 3 (lower is better) Translates to: QQYLILPRDIST*RAQRLANIKTI Trigger: TATGGTCTTAATATTAGCCAGCCTCTGAGCCCTGCAGGTAGAAATGTCCCTTGGGAGAATTAAGTATTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR TCA 90 bp | AGTGACAGTCACAAGTCTGGAAGTGCATCCCATTCCTCCACCTCGGGCACCGTGCTAGGCTTCTGTCTTTaGAGTCCATGTTCCAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: SDSHKSGSASHSSTSGTVLGFCL*SPCSSR Trigger: GCGGCTGGAACATGGACTTCAAAGACAGAAGCCTAG...CACGGTGCCCGAGGTGGAGGAATGGGATGCACTTCCAGACTTGTGACTGTCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR GCA 90 bp | AGTGACAGTCACAAGTCTGGAAGTGCATCCCATTCCTCCACCTCGGGCACCGTGTCAGACACATGGAGCTaGTGGCAGTTCCTCAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SDSHKSGSASHSSTSGTVSDTWS*WQFLRS Trigger: GCTTCTGAGGAACTGCCAGCAGCTCCATGTGTCTGA...CACGGTGCCCGAGGTGGAGGAATGGGATGCACTTCCAGACTTGTGACTGTCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR CCA 90 bp | ACCACACAGACCCTCTGCAGCCTAGCCTGTGAGGGTGAAGTGACAGTCACAAGTACTAGGTCCAAGGCCTaGATGGCCGATGACCCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: TTQTLCSLACEGEVTVTSTRSKA*MADDPN Trigger: GTTTGGGTCATCGGCCATCCAGGCCTTGGACCTAGT...ACTTGTGACTGTCACTTCACCCTCACAGGCTAGGCTGCAGAGGGTCTGTGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR CCA 90 bp | AGTGACAGTCACAAGTCTGGAAGTGCATCCCATTCCTCCACCTCGGGCACCGTGTGCTTGTCAGACACATaGAGCTGCTGGCAGTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SDSHKSGSASHSSTSGTVCLSDT*SCWQFL Trigger: GAGGAACTGCCAGCAGCTCCATGTGTCTGACAAGCA...CACGGTGCCCGAGGTGGAGGAATGGGATGCACTTCCAGACTTGTGACTGTCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR GCA 90 bp | ATTCTCCCAAGGGACATTTCTACCTGCAGGGCTCAGAGGCTGGCTAATATTAAGGACATGTATATGTTTTaGCAGAACTCCCTAGCACCT | + |
|
Preference number: 4 (lower is better) Translates to: ILPRDISTCRAQRLANIKDMYMF*QNSLAP Trigger: AGGTGCTAGGGAGTTCTGGCAAAACATATACATGTC...CTTAATATTAGCCAGCCTCTGAGCCCTGCAGGTAGAAATGTCCCTTGGGAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR CCA 90 bp | ATGGCTCAGGCTTTATTTGAGTCAACAATACTTAATTCTCCCAAGGGACATTTCGGTCCAAGGCCTGGATaGCCGATGACCCAAACACAA | + |
|
Preference number: 4 (lower is better) Translates to: MAQALFESTILNSPKGHFGPRPG*PMTQTQ Trigger: TTGTGTTTGGGTCATCGGCCATCCAGGCCTTGGACC...GAAATGTCCCTTGGGAGAATTAAGTATTGTTGACTCAAATAAAGCCTGAGCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR TCA 90 bp | GCTCAGGCTTTATTTGAGTCAACAATACTTAATTCTCCCAAGGGACATTTCTACGTGATGAGATTAAAGTaGCGGACTCTCGATCGACTA | + |
|
Preference number: 4 (lower is better) Translates to: AQALFESTILNSPKGHFYVMRLK*RTLDRL Trigger: TAGTCGATCGAGAGTCCGTCACTTTAATCTCATCAC...GTAGAAATGTCCCTTGGGAGAATTAAGTATTGTTGACTCAAATAAAGCCTGAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS TCA 90 bp | CTAGCACCTGGTAAACACGCCTTCCACTGGGTGATGAGATTAAAGTaGCGGACTCTCGATCGACTAGGTCCAAGGCCTGGATGGCCGATG | + |
|
Preference number: 5 (lower is better) Translates to: LAPGKHAFHWVMRLK*RTLDRLGPRPGWPM Trigger: CATCGGCCATCCAGGCCTTGGACCTAGTCGATCGAGAGTCCGTCACTTTAATCTCATCACCCAGTGGAAGGCGTGTTTACCAGGTGCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR CAA 90 bp | AAGTCTGGAAGTGCATCCCATTCCTCCACCTCGGGCACCGTGAGATGTGAATGCAGGTCTGTCAGTTGCTaGTCAGACACATGGAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: KSGSASHSSTSGTVRCECRSVSC*SDTWSC Trigger: GCAGCTCCATGTGTCTGACAAGCAACTGACAGACCT...GCATTCACATCTCACGGTGCCCGAGGTGGAGGAATGGGATGCACTTCCAGACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS CCA 90 bp | GATGAGATTAAAGTGACGGACTCTCGATCGACTAGGTCCAAGGCCTaGATGGCCGATGACCCAAACACAAACTCCAGCGATAAGAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: DEIKVTDSRSTRSKA*MADDPNTNSSDKRS Trigger: GCTTCTCTTATCGCTGGAGTTTGTGTTTGGGTCATCGGCCATCCAGGCCTTGGACCTAGTCGATCGAGAGTCCGTCACTTTAATCTCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS-3UTR CAA 90 bp | CTAGCCTGTGAGGGTGAAGTGACAGTCACAAGTCTGGAAGTGCATCCCATTCCTAGACATGTATATGTTTaGCCAGAACTCCCTAGCACC | + |
|
Preference number: 5 (lower is better) Translates to: LACEGEVTVTSLEVHPIPRHVYV*PELPST Trigger: GGTGCTAGGGAGTTCTGGCAAAACATATACATGTCT...AGGAATGGGATGCACTTCCAGACTTGTGACTGTCACTTCACCCTCACAGGCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS CCA 72 bp | AAAGTGACGGACTCTCGATCGACTAGGTCCAAGGCCTaGATGGCCGATGACCCAAACACAAACTCCAGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: KVTDSRSTRSKA*MADDPNTNSSD Trigger: ATCGCTGGAGTTTGTGTTTGGGTCATCGGCCATCCAGGCCTTGGACCTAGTCGATCGAGAGTCCGTCACTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS GCA 72 bp | AGCAGTAATGACAGGAAGCCAGACATGTATATGTTTTaGCAGAACTCCCTAGCACCTGGTAAACACGCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: SSNDRKPDMYMF*QNSLAPGKHAF Trigger: GAAGGCGTGTTTACCAGGTGCTAGGGAGTTCTGGCAAAACATATACATGTCTGGCTTCCTGTCATTACTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||
| CDS CAA 90 bp | CTTCTGTCTTTGAAGTCCATGTTCCAGCCGCACCTTTTATCCTTCTaGTGTCCTCCATCAATAGGTCTGTCAGTTGCTTGTCAGACACAT | + |
|
Preference number: 6 (lower is better) Translates to: LLSLKSMFQPHLLSF*CPPSIGLSVACQTH Trigger: ATGTGTCTGACAAGCAACTGACAGACCTATTGATGGAGGACACAAGAAGGATAAAAGGTGCGGCTGGAACATGGACTTCAAAGACAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072916.5 |
||