RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZSWIM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035671

Ensembl transcript IDs: ENSMUST00000039480.7

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGCCCAGCCCTTCTCCTGGAAGTCCCAGCTGACCCTGGGAGTCTaGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCAC +
Preference number: 1 (lower is better)
Translates to: LAQPFSWKSQLTLGV*KSQSLLLPCEVPRH
Trigger: GTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGGTCAGCTGGGACTTCCAGGAGAAGGGCTGGGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 90 bp AAGACAGGTGCGTCTGGGGTGGAGGCTCTCCCTTCTCTTCCTCCCTaGGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGAC +
Preference number: 1 (lower is better)
Translates to: KTGASGVEALPSLPP*AKAWDTGRPVSSWD
Trigger: GTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCCCAGGGAGGAAGAGAAGGGAGAGCCTCCACCCCAGACGCACCTGTCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 90 bp AGTGGTGGGGTCTGGCCAGCAGAGAGCTGTCCCCAGCCTACCCTGTaGCCTTGGTGCCCAAGAGAAGACAGGCCCTGGCTTGACAAGGGT +
Preference number: 1 (lower is better)
Translates to: SGGVWPAESCPQPTL*PWCPREDRPWLDKG
Trigger: ACCCTTGTCAAGCCAGGGCCTGTCTTCTCTTGGGCACCAAGGTCACAGGGTAGGCTGGGGACAGCTCTCTGCTGGCCAGACCCCACCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 90 bp TCTGGGGTGGAGGCTCTCCCTTCTCTTCCTCCCTGGGCCAAGGCCTaGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATG +
Preference number: 1 (lower is better)
Translates to: SGVEALPSLPPWAKA*DTGRPVSSWDLREM
Trigger: CATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCCCAGGGAGGAAGAGAAGGGAGAGCCTCCACCCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 90 bp GGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGTCCCAGCTaGCCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTG +
Preference number: 1 (lower is better)
Translates to: GLTSLWPSPSPGSPS*PWESGRARACFFRV
Trigger: CACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGGTCAGCTGGGACTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 90 bp TCCCACCTCTGTAACTTTACTGCAAGTAGCCATGGGCCTCCTGTTTaGGGAAGGTGGGCCTGGGACACCCATGCTCCCGGCTTTCTGCAG +
Preference number: 1 (lower is better)
Translates to: SHLCNFTASSHGPPV*GRWAWDTHAPGFLQ
Trigger: CTGCAGAAAGCCGGGAGCATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAGTAAAGTTACAGAGGTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 90 bp ATGCCAACTTTTTCCTTAATATACAAGAGAGAAGACAGGTGCGTCTaGGGTGGAGGCTCTCCCTTCTCTTCCTCCCTGGGCCAAGGCCTG +
Preference number: 1 (lower is better)
Translates to: MPTFSLIYKREDRCV*GGGSPFSSSLGQGL
Trigger: CAGGCCTTGGCCCAGGGAGGAAGAGAAGGGAGAGCCTCCACCCCAGACGCACCTGTCTTCTCTCTTGTATATTAAGGAAAAAGTTGGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCGCCCAGCCCTTCTCCTaGAAGTCCCAGCTGACCCTG +
Preference number: 2 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAAAQPFS*KSQLTL
Trigger: CAGGGTCAGCTGGGACTTCCAGGAGAAGGGCTGGGC...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATGGCCAGCTCCGGCTCTaGAGCATCTGCTGCACTGAG +
Preference number: 2 (lower is better)
Translates to: GQGLGYRKACQQLGLERDGQLRL*SICCTE
Trigger: CTCAGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCC...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR TCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGCCTGGAAGTCCCAGCTaGCCCTGGGAGTCTGGAAGA +
Preference number: 2 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWPGSPS*PWESGR
Trigger: TCTTCCAGACTCCCAGGGTCAGCTGGGACTTCCAGG...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR TCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGAAGGGTATTTGGGGGTaGGGTATGTGGCAGAGGCCC +
Preference number: 2 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWKGIWG*GMWQRP
Trigger: GGGCCTCTGCCACATACCTCACCCCCAAATACCCTT...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGGGCCTAACTTCACTCTaGCCCAGCCCTTCTCCTGGA +
Preference number: 2 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWGLTSL*PSPSPG
Trigger: TCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCC...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCGGGGGCGCAGGGCAGTaGGACAGGAGCCCTGAGCTG +
Preference number: 2 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSIGGAGQ*DRSPEL
Trigger: CAGCTCAGGGCTCCTGTCCCACTGCCCTGCGCCCCC...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCTTTGTGCTGGAAAGCTaGGGCTGGGGGCGCAGGGCA +
Preference number: 2 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSIFVLES*GWGRRA
Trigger: TGCCCTGCGCCCCCAGCCCCAGCTTTCCAGCACAAA...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCGGGAAACTAAGGGAGTaGGGAAACAAATGGAGGTGC +
Preference number: 2 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSIGKLRE*GNKWRC
Trigger: GCACCTCCATTTGTTTCCCCACTCCCTTAGTTTCCC...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR GCA 72 bp GAGGAAGACAGAACGGGGTCCCTGGCTGTCTGCCTGTaGCTCCCACAACAGGCTGGAGGGCAGCCTGACTCC +
Preference number: 3 (lower is better)
Translates to: EEDRTGSLAVCL*LPQQAGGQPDS
Trigger: GGAGTCAGGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTCTGTCTTCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR GCA 72 bp GAGCAAGAGGAAGACAGAACGGGGTCCCTGGCTGTCTaGCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCT +
Preference number: 3 (lower is better)
Translates to: EQEEDRTGSLAV*LCLPQQAGGQP
Trigger: AGGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTCTGTCTTCCTCTTGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CAA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCTGGAAGAGCCAGAGCTaGCTTCTTCCGTGTGAGGTG +
Preference number: 3 (lower is better)
Translates to: ERGPWLSACASHNRLEGSWKSQS*LLPCEV
Trigger: CACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCA...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 72 bp GTCTGGCCAGCAGAGAGCTGTCCCCAGCCTACCCTGTaGCCTTGGTGCCCAAGAGAAGACAGGCCCTGGCTT +
Preference number: 3 (lower is better)
Translates to: VWPAESCPQPTL*PWCPREDRPWL
Trigger: AAGCCAGGGCCTGTCTTCTCTTGGGCACCAAGGTCACAGGGTAGGCTGGGGACAGCTCTCTGCTGGCCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 72 bp GCCAGCTCCGGCTCTGGAGCATCTGCTGCACTGAGTTaGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCC +
Preference number: 3 (lower is better)
Translates to: ASSGSGASAALS*RPNFTLAQPFS
Trigger: GGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGCAGATGCTCCAGAGCCGGAGCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 72 bp GAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTaGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAG +
Preference number: 3 (lower is better)
Translates to: EVQSKRKTERGP*LSACASHNRLE
Trigger: CTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 72 bp GAGGCTCTCCCTTCTCTTCCTCCCTGGGCCAAGGCCTaGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTG +
Preference number: 3 (lower is better)
Translates to: EALPSLPPWAKA*DTGRPVSSWDL
Trigger: CAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCCCAGGGAGGAAGAGAAGGGAGAGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 72 bp CCCTTCTCCTGGAAGTCCCAGCTGACCCTGGGAGTCTaGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTG +
Preference number: 3 (lower is better)
Translates to: PFSWKSQLTLGV*KSQSLLLPCEV
Trigger: CACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGGTCAGCTGGGACTTCCAGGAGAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CAA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCCCATGGGCCTCCTGTTaGAGGAAGGTGGGCCTGGGA +
Preference number: 3 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASPWASC*RKVGLG
Trigger: TCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGG...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR-3UTR CAA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGGCCTACCCTGTGACCTaGGTGCCCAAGAGAAGACAG +
Preference number: 3 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWAYPVT*VPKRRQ
Trigger: CTGTCTTCTCTTGGGCACCAAGGTCACAGGGTAGGC...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 72 bp TGTAACTTTACTGCAAGTAGCCATGGGCCTCCTGTTTaGGGAAGGTGGGCCTGGGACACCCATGCTCCCGGC +
Preference number: 3 (lower is better)
Translates to: CNFTASSHGPPV*GRWAWDTHAPG
Trigger: GCCGGGAGCATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAGTAAAGTTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 72 bp GTGACCTTGGTGCCCAAGAGAAGACAGGCCCTGGCTTaGCAAGGGTATTTGGGGGTGAGGTATGTGGCAGAG +
Preference number: 3 (lower is better)
Translates to: VTLVPKRRQALA*QGYLGVRYVAE
Trigger: CTCTGCCACATACCTCACCCCCAAATACCCTTGTCAAGCCAGGGCCTGTCTTCTCTTGGGCACCAAGGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR TCA 72 bp CCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTaGGAGAGATGCAGACATGGGGAAACTAAGGGAGTG +
Preference number: 3 (lower is better)
Translates to: PGIQEGLSAAGT*ERCRHGETKGV
Trigger: CACTCCCTTAGTTTCCCCATGTCTGCATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 72 bp TTTTCCTTAATATACAAGAGAGAAGACAGGTGCGTCTaGGGTGGAGGCTCTCCCTTCTCTTCCTCCCTGGGC +
Preference number: 3 (lower is better)
Translates to: FSLIYKREDRCV*GGGSPFSSSLG
Trigger: GCCCAGGGAGGAAGAGAAGGGAGAGCCTCCACCCCAGACGCACCTGTCTTCTCTCTTGTATATTAAGGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CCA 72 bp TGCAGATGGAAAAGCAGTAAAGCCACCAGCAAGAGGTaGCTCTTCGTGTCACCACGATGCCATGAAGAAACC +
Preference number: 3 (lower is better)
Translates to: CRWKSSKATSKR*LFVSPRCHEET
Trigger: GGTTTCTTCATGGCATCGTGGTGACACGAAGAGCCACCTCTTGCTGGTGGCTTTACTGCTTTTCCATCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCTGCCGCCCCAGCGAGTaGCTGAGGGAGCAGGCCCAC +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAACRPSE*LREQAH
Trigger: GTGGGCCTGCTCCCTCAGCCACTCGCTGGGGCGGCA...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCGTGAAGAGGTGGGCGTaGCCGAGGCCACCGGCTGCA +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSVKRWA*PRPPAA
Trigger: TGCAGCCGGTGGCCTCGGCCACGCCCACCTCTTCAC...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCTGGCGGTGCGCTGGCTaGAGTGGCTGTCTTGCAGGC +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAAWRCAG*SGCLAG
Trigger: GCCTGCAAGACAGCCACTCCAGCCAGCGCACCGCCA...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCTGGCGGGTCTCCAGGTaGCCAAGGATGAACCACCGG +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSWRVSR*PRMNHR
Trigger: CCGGTGGTTCATCCTTGGCCACCTGGAGACCCGCCA...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCTGTCTGGCGGTGCGCTaGCTGGAGTGGCTGTCTTGC +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSCLAVR*LEWLSC
Trigger: GCAAGACAGCCACTCCAGCCAGCGCACCGCCAGACA...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCCTCCAGCAGTGCCCTaGAGAGGCAGCCAATGGGAT +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSPPAVP*RGSQWD
Trigger: ATCCCATTGGCTGCCTCTGCAGGGCACTGCTGGAGG...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCTGTGCGAACTGGAGGTaGCCGTCTGGTGCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAACANWR*PSGARR
Trigger: CCTTCTGGCACCAGACGGGCACCTCCAGTTCGCACA...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCCGCACCACTTTGTCCTaGGCATACAGTCCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAARTTLS*AYSPSG
Trigger: GCCGGAGGGACTGTATGCCCAGGACAAAGTGGTGCG...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGGCCCAGCCCGGGTGCTaGGAGTGTCCAGCGTCGCAG +
Preference number: 4 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKAQPGC*ECPASQ
Trigger: CTGCGACGCTGGACACTCTCAGCACCCGGGCTGGGC...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCAACCTTTCCTCCACCTaGTCGAAGGCCCAGCTCTCG +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSNLSST*SKAQLS
Trigger: CGAGAGCTGGGCCTTCGAGCAGGTGGAGGAAAGGTT...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGGGCAGGGCCCGCTGCTaGCCTAGCCCCAGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWGRARC*PSPRSA
Trigger: GGCACTCCTGGGGCTAGGGCAGCAGCGGGCCCTGCC...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTGAGGCCAGCTCACACTaGCGGGTCTCCAGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTEASSH*RVSRWP
Trigger: TGGCCACCTGGAGACCCGCCAGTGTGAGCTGGCCTC...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCGCAGTCGCAGCAAAGTaGCATGCGTGGTGCCTGTCA +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSAVAAK*HAWCLS
Trigger: TGACAGGCACCACGCATGCCACTTTGCTGCGACTGC...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGGCAACCGTGAAGAGGTaGGCGTGGCCGAGGCCACCG +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMATVKR*AWPRPP
Trigger: CGGTGGCCTCGGCCACGCCCACCTCTTCACGGTTGC...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTACGGATGCGGTACAATaGCAGCGCCACCACGTGGGC +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTTDAVQ*QRHHVG
Trigger: GCCCACGTGGTGGCGCTGTCATTGTACCGCATCCGT...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCGGATCTGGGGCACCATaGACCAGGTTGATCTCAGAG +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAAGSGAP*TRLISE
Trigger: CTCTGAGATCAACCTGGTTCATGGTGCCCCAGATCC...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCCCTCTGAGCCTGTCCTaGAGGTTAGAGCAGGCTGTA +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAAPLSLS*RLEQAV
Trigger: TACAGCCTGCTCTAACCTCCAGGACAGGCTCAGAGG...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTGCGTCGCAGGATGTCTaGGAGCATGGGTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTASQDV*EHGCTV
Trigger: CACTGTGCACCCATGCTCTCAGACATCCTGCGACGC...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGATGCCAGCACCTTGCTaGCGCCACAGGGCCAGGCGA +
Preference number: 4 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKMPAPC*RHRARR
Trigger: TCGCCTGGCCCTGTGGCGGCAGCAAGGTGCTGGCAT...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATGTCATGCCAGCACCTTaGTGCCGCCACAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDVMPAP*CRHRAR
Trigger: CCTGGCCCTGTGGCGGCAGCAAGGTGCTGGCATGAC...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp CCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACAGGCCTCCAGCAGTaGCCTGCAGAGGCAGCCAAT +
Preference number: 4 (lower is better)
Translates to: PWESGRARACFFRVRCPGTGLQQ*PAEAAN
Trigger: ATTGGCTGCCTCTGCAGGGCACTGCTGGAGGCCTGT...GCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp CCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCTATCGGGCACAGGTGTaGATGGGTACGCTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: PWESGRARACFFRVRCPGYRAQV*MGTLSR
Trigger: CCGGGAGAGCGTACCCATGCACACCTGTGCCCGATA...GCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp CCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACTGCAGTGCCAAGGTaGGGGCACAAGCCCAGAGCT +
Preference number: 4 (lower is better)
Translates to: PWESGRARACFFRVRCPGTAVPR*GHKPRA
Trigger: AGCTCTGGGCTTGTGCCCGCACCTTGGCACTGCAGT...GCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGGTTCGCCCAGCCAGATaGGGTGGCCCTGAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMVRPAR*GGPEGQ
Trigger: TTGACCCTCAGGGCCACCCCATCTGGCTGGGCGAAC...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTGTGCGCTGGCTGGAGTaGCTGTCTTGCAGGCATCCT +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTVRWLE*LSCRHP
Trigger: AGGATGCCTGCAAGACAGCCACTCCAGCCAGCGCAC...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCGCAGGGTGGCTGTCTTaGTTGAAGGCAATGCTGAGT +
Preference number: 4 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAAAGWLS*LKAMLS
Trigger: ACTCAGCATTGCCTTCAACCAAGACAGCCACCCTGC...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGCCTGCAGTGCTCGGCTaGAAACTGTCCTGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWPAVLG*KLSCGG
Trigger: GCCCCCGCAGGACAGTTTTCAGCCGAGCACTGCAGG...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGGCCCCAGCGAGTGGCTaGGGGAGCAGGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLAPASG*GSRPTA
Trigger: TGCTGTGGGCCTGCTCCCTCAGCCACTCGCTGGGGC...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGGGCATCTTCTGTGCCTaGACCCGCTGTGGGATCTGG +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMGIFCA*TRCGIW
Trigger: CCAGATCCCACAGCGGGTGCAGGCACAGAAGATGCC...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCAGCAGCTGTTTCACCTaGTCTTGGATCTGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: ERGPWLSACASHNRLEGSSSCFT*SWICSS
Trigger: TGAGGAGCAGATCCAAGAGCAGGTGAAACAGCTGCT...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACATACTCCCTGCAGGGTGTGGTAGAGATGCTCTaGCTCTCCTGGGCCCCCAAC +
Preference number: 4 (lower is better)
Translates to: ARACFFRVRCPGTYSLQGVVEML*LSWAPN
Trigger: GTTGGGGGCCCAGGAGAGCCAGAGCATCTCTACCAC...ACCCTGCAGGGAGTATGTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATAGCGCAGCTGCTGGCTaGCCCCATAGTGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDSAAAG*PHSGHH
Trigger: ATGGTGGCCACTATGGGGCCAGCCAGCAGCTGCGCT...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTGGTGACCGCCTCCACTaGGGTGAACAAGGAGTACCA +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTGDRLH*GEQGVP
Trigger: TGGTACTCCTTGTTCACCCCAGTGGAGGCGGTCACC...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTTGGGTGAGGCGAGAGTaGCTGGTGGTTATGTACGCG +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTWVRRE*LVVMYA
Trigger: CGCGTACATAACCACCAGCCACTCTCGCCTCACCCA...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp CCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCTCGCTTCTCTGGGGCTaGGTCTGGGAAAAGAGAGTG +
Preference number: 4 (lower is better)
Translates to: PWESGRARACFFRVRCPGSLLWG*VWEKRV
Trigger: CACTCTCTTTTCCCAGACTCAGCCCCAGAGAAGCGA...GCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCCCAGGTGGCCAAGGATaGACCACCGGGGGAAGCGGT +
Preference number: 4 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASPGGQG*TTGGSG
Trigger: ACCGCTTCCCCCGGTGGTTCATCCTTGGCCACCTGG...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGTATACCGTGCAACCGTaGAGAGGTGGGCGTGGCCGA +
Preference number: 4 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKYTVQP*RGGRGR
Trigger: TCGGCCACGCCCACCTCTTCACGGTTGCACGGTATA...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACATACTCCCTGCAGGGTCCCACAGCACATCGTTaGCTGCAGGGTGGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: ARACFFRVRCPGTYSLQGPTAHR*LQGGCL
Trigger: AAGACAGCCACCCTGCAGTCAACGATGTGCTGTGGG...ACCCTGCAGGGAGTATGTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCGGTACCCGGGTGTCCTaGTCACCTTCTGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASGTRVS*SPSGGW
Trigger: CCAGCCCCCAGAAGGTGAGCAGGACACCCGGGTACC...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCGTCATCCGCATCACCTaGAGGCCGAGCTCCAGCGCG +
Preference number: 4 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASVIRIT*RPSSSA
Trigger: CGCGCTGGAGCTCGGCCTGCAGGTGATGCGGATGAC...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACATACTCCCTGCAGGGTAGCGAACCATCTCCCTaGGCCGCCAAGTCATGGTGT +
Preference number: 4 (lower is better)
Translates to: ARACFFRVRCPGTYSLQGSEPSP*AAKSWC
Trigger: ACACCATGACTTGGCGGCGCAGGGAGATGGTTCGCT...ACCCTGCAGGGAGTATGTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGACAGAGTCTCAGAGATaGGCAGCCGCAGCTCCACCT +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMTESQR*AAAAPP
Trigger: AGGTGGAGCTGCGGCTGCCCATCTCTGAGACTCTGT...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACATACTCCCTGCAGGGTACCCGCTGTGGGATCTaGGGCACCATGAACCAGGTT +
Preference number: 4 (lower is better)
Translates to: ARACFFRVRCPGTYSLQGTRCGI*GTMNQV
Trigger: AACCTGGTTCATGGTGCCCCAGATCCCACAGCGGGT...ACCCTGCAGGGAGTATGTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATCTTCTCCAAAGCCGCTaGAAGGGCCTCCTTCCAGCA +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDLLQSR*KGLLPA
Trigger: TGCTGGAAGGAGGCCCTTTCAGCGGCTTTGGAGAAG...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGCGCAGCAAAGTGGCATaGGTGGTGCCTGTCACTGCC +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWRSKVA*VVPVTA
Trigger: GGCAGTGACAGGCACCACGCATGCCACTTTGCTGCG...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTATGCTCCATATACCGTaGAACCGTGAAGAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTMLHIP*NREEVG
Trigger: GCCCACCTCTTCACGGTTGCACGGTATATGGAGCAT...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGGAGGTGCCCGTCTGGTaGCAGAAGGAAGGTCTCTCG +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWEVPVW*QKEGLS
Trigger: CGAGAGACCTTCCTTCTGGCACCAGACGGGCACCTC...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACATACTCCCTGCAGGGTGCAAAGTGGCATGCGTaGTGCCTGTCACTGCCACTA +
Preference number: 4 (lower is better)
Translates to: ARACFFRVRCPGTYSLQGAKWHA*CLSLPL
Trigger: TAGTGGCAGTGACAGGCACCACGCATGCCACTTTGC...ACCCTGCAGGGAGTATGTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATGCCTCAAAGGCCGCGTaGTTCTTCTCACACAGGGTC +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDASKAA*FFSHRV
Trigger: GACCCTGTGTGAGAAGAACCACGCGGCCTTTGAGGC...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGAAGAACTGTGCGAACTaGAGGTGCCCGTCTGGTGCC +
Preference number: 4 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKKNCAN*RCPSGA
Trigger: GGCACCAGACGGGCACCTCCAGTTCGCACAGTTCTT...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGAGTGTGGGCTCAAAATaGCACAGACCCACAAAGCCC +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMSVGSK*HRPTKP
Trigger: GGGCTTTGTGGGTCTGTGTCATTTTGAGCCCACACT...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCCCCATTGGAGTCCCGTaGTCGAAGCATCTCCCGCAC +
Preference number: 4 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASPIGVP*SKHLPH
Trigger: GTGCGGGAGATGCTTCGAGCACGGGACTCCAATGGG...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp CCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCGTAGCTGTTCTTCATTaGGCACCACTTTGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: PWESGRARACFFRVRCPGVAVLH*APLCPG
Trigger: CCCAGGACAAAGTGGTGCGCAATGAAGAACAGCTAC...GCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCACATACTCCCTGCAGGGTCAGCACATCGTTGACTaGAGGGTGGCTGTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: ARACFFRVRCPGTYSLQGQHIVD*RVAVLV
Trigger: AACCAAGACAGCCACCCTGCAGTCAACGATGTGCTG...ACCCTGCAGGGAGTATGTGCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATGGCCACAGGAATCACTaGCCAGGATCCTCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDGHRNH*PGSSVG
Trigger: ACCTACAGAGGATCCTGGCCAGTGATTCCTGTGGCC...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGCATGATGGAGTCCAGTaGGTTGGGGTGAGATTCTCC +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMHDGVQ*VGVRFS
Trigger: GGAGAATCTCACCCCAACCCACTGGACTCCATCATG...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGAGCAGGGCTGGGGAGTaGATATTTTGCTGGACGGAG +
Preference number: 4 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKSRAGE*IFCWTE
Trigger: CTCCGTCCAGCAAAATATCCACTCCCCAGCCCTGCT...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGGCCAGGCGAGGGTCCTaGAGGAACTGCTCAGTCATG +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLARRGS*RNCSVM
Trigger: CATGACTGAGCAGTTCCTGCAGGACCCTCGCCTGGC...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGAAGTGGCATGCGTGGTaGCTGTCACTGCCACTATGG +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWKWHAW*LSLPLW
Trigger: CCATAGTGGCAGTGACAGGCACCACGCATGCCACTT...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGTCCTTCATGGCGCACTaGAGTGCCAAGGTGCGGGCA +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLSFMAH*SAKVRA
Trigger: TGCCCGCACCTTGGCACTGCAGTGCGCCATGAAGGA...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GATGTGAAGTGCCTAGGCTCCGGCCAGCTCCGGCTCTGGAGCATCTGCTGCACTCTCCCGCTCACTTCGTaGAAAAGACCAGAACACAAT +
Preference number: 4 (lower is better)
Translates to: DVKCLGSGQLRLWSICCTLPLTS*KRPEHN
Trigger: ATTGTGTTCTGGTCTTTTCCACGAAGTGAGCGGGAG...AGTGCAGCAGATGCTCCAGAGCCGGAGCTGGCCGGAGCCTAGGCACTTCACATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGGGATGTCTGAGAGCATaGGTGCACAGTGGATGCTTC +
Preference number: 4 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKGCLRA*VHSGCF
Trigger: GAAGCATCCACTGTGCACCCATGCTCTCAGACATCC...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GTGAGGTATGTGGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCTGGAGGTGCCCGTCTaGTGCCAGAAGGAAGGTCTC +
Preference number: 4 (lower is better)
Translates to: VRYVAEAQDLLISFSGVRLEVPV*CQKEGL
Trigger: GAGACCTTCCTTCTGGCACCAGACGGGCACCTCCAG...CCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCCACATACCTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGTTCCCATACTGCCAGTaGGGGTGGGGCCACAGGAAT +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLFPYCQ*GWGHRN
Trigger: ATTCCTGTGGCCCCACCCTCACTGGCAGTATGGGAA...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATCACCTCAGTGTGGTGTaGACTGATGAGATACTGCAC +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDHLSVV*TDEILH
Trigger: GTGCAGTATCTCATCAGTGCACACCACACTGAGGTG...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCCTTGCAGGCATCCTGTaGCAACTTGAAGAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASLAGIL*QLEEQG
Trigger: GCCCTGCTCTTCAAGTTGGCACAGGATGCCTGCAAG...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATAGGATCCTCTGTAGGTaGCTGTCATTCCAGTGCAAC +
Preference number: 4 (lower is better)
Translates to: GQGLGYRKACQQLGLERDRILCR*LSFQCN
Trigger: GTTGCACTGGAATGACAGCCACCTACAGAGGATCCT...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGTCGTTGACTGCAGGGTaGCTGTCTTGGTTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWSLTAG*LSWLKA
Trigger: TGCCTTCAACCAAGACAGCCACCCTGCAGTCAACGA...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GTGAGGTATGTGGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGGTCACCATAGTGGCGTaGGCTAATGTGGGTGAGGCG +
Preference number: 4 (lower is better)
Translates to: VRYVAEAQDLLISFSGVRVTIVA*ANVGEA
Trigger: CGCCTCACCCACATTAGCCCACGCCACTATGGTGAC...CCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCCACATACCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
3UTR CAA 72 bp TGTGACCTTGGTGCCCAAGAGAAGACAGGCCCTGGCTaGACAAGGGTATTTGGGGGTGAGGTATGTGGCAGA +
Preference number: 4 (lower is better)
Translates to: CDLGAQEKTGPG*TRVFGGEVCGR
Trigger: TCTGCCACATACCTCACCCCCAAATACCCTTGTCAAGCCAGGGCCTGTCTTCTCTTGGGCACCAAGGTCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GTGAGGTATGTGGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCACCATGAACCAGGTTaGTCTCAGAGCCCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: VRYVAEAQDLLISFSGVRHHEPG*SQSPAG
Trigger: TCCTGCTGGGCTCTGAGATCAACCTGGTTCATGGTG...CCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCCACATACCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGCTGGAGTGGCTGTCTTaGAGGCATCCTGTGCCAACT +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLLEWLS*RHPVPT
Trigger: AGTTGGCACAGGATGCCTGCAAGACAGCCACTCCAG...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGATGCTCTGGCTCTCCTaGGCCCCCAACTTCTCGAAT +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLMLWLS*APNFSN
Trigger: ATTCGAGAAGTTGGGGGCCCAGGAGAGCCAGAGCAT...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp CTGCAAGTAGCCATGGGCCTCCTGTTTGAGGAAGGTGGGCCTGGGACACCCATGATCTGGTTTGCAGTGTaGGCTCAAAATGACACAGAC +
Preference number: 4 (lower is better)
Translates to: LQVAMGLLFEEGGPGTPMIWFAV*AQNDTD
Trigger: GTCTGTGTCATTTTGAGCCCACACTGCAAACCAGAT...CATGGGTGTCCCAGGCCCACCTTCCTCAAACAGGAGGCCCATGGCTACTTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGAGCATGGGTGCACAGTaGATGCTTCGGATGATGAGA +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWSMGAQ*MLRMMR
Trigger: TCTCATCATCCGAAGCATCCACTGTGCACCCATGCT...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp GTGAGGTATGTGGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGTGCCCAGGAACTCAATaGAGTCACCATAGTGGCGTG +
Preference number: 4 (lower is better)
Translates to: VRYVAEAQDLLISFSGVRCPGTQ*SHHSGV
Trigger: CACGCCACTATGGTGACTTCATTGAGTTCCTGGGCA...CCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCCACATACCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGGGGTCCTGCAGGAACTaGTCAGTCATGAGGATTAGC +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLGSCRN*SVMRIS
Trigger: GCTAATCCTCATGACTGAGCAGTTCCTGCAGGACCC...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp GTGGGGAAACAAATGGAGGTGCAGAGCAAGAGGAAGACAGAACGGGGTCCCTGGTGTTTCACCTGCTCTTaGATCTGCTCCTCATCCAGA +
Preference number: 4 (lower is better)
Translates to: VGKQMEVQSKRKTERGPWCFTCS*ICSSSR
Trigger: TCTGGATGAGGAGCAGATCCAAGAGCAGGTGAAACA...CCAGGGACCCCGTTCTGTCTTCCTCTTGCTCTGCACCTCCATTTGTTTCCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGTGTCCAAGGAATAGTTaGCTTCTTCCAGTGGGCACA +
Preference number: 4 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLCPRNS*LLPVGT
Trigger: TGTGCCCACTGGAAGAAGGCAACTATTCCTTGGACA...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCTCCGGCAGGGCCCGCTaGTGCCCTAGCCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSISGRAR*CPSPRS
Trigger: ACTCCTGGGGCTAGGGCAGCAGCGGGCCCTGCCGGA...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCGCACAGGCAGCCTCATaGCTCGGAGCGCCAGGCGGA +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSIAQAAS*LGAPGG
Trigger: TCCGCCTGGCGCTCCGAGCCATGAGGCTGCCTGTGC...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCTCTCCCGCACCTTGCTaGACATGGAGCGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSISPAPC*TWSAAA
Trigger: AGCAGCTGCGCTCCATGTTCAGCAAGGTGCGGGAGA...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR TCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCTCTGGGAAAAGAGAGTaGGGCTCCTCCTCCAGGCGA +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSISGKRE*GSSSRR
Trigger: TCGCCTGGAGGAGGAGCCTCACTCTCTTTTCCCAGA...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCGGCGAGAGTGGCTGGTaGTTATGTACGCGGCTACTG +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSIGESGW*LCTRLL
Trigger: CAGTAGCCGCGTACATAACCACCAGCCACTCTCGCC...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCCCAGATGCCAACAGTTaGCATCTTCTGTGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSIPDANS*HLLCLH
Trigger: GTGCAGGCACAGAAGATGCCAACTGTTGGCATCTGG...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR GCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCACCTGCTCTTGGATCTaGTCCTCATCCAGATGCCAA +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSITCSWI*SSSRCQ
Trigger: TTGGCATCTGGATGAGGAGCAGATCCAAGAGCAGGT...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CCA 90 bp TTTGTGTTAGCAATGCAACCCAGTCTTGAAGTTAAAAAGAAGTTGTGTTCAATCCTTGAAGAGCAGGGCTaGGGAGTGGATATTTTGCTG +
Preference number: 4 (lower is better)
Translates to: FVLAMQPSLEVKKKLCSILEEQG*GVDILL
Trigger: CAGCAAAATATCCACTCCCCAGCCCTGCTCTTCAAG...GATTGAACACAACTTCTTTTTAACTTCAAGACTGGGTTGCATTGCTAACACAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp AGGCCCGCAGAGGCAGGCCTCGATGCTCCATATACCGTGCAACCGTaGAGAGGTGGGCGTGGCCGAGGCCACCGGCTGCAGCGTCCAGCA +
Preference number: 5 (lower is better)
Translates to: RPAEAGLDAPYTVQP*RGGRGRGHRLQRPA
Trigger: TGCTGGACGCTGCAGCCGGTGGCCTCGGCCACGCCCACCTCTTCACGGTTGCACGGTATATGGAGCATCGAGGCCTGCCTCTGCGGGCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp CGCACCACTTTGTCCTGGGCATACAGTCCCTCCGGCAGGGCCCGCTaGTGCCCTAGCCCCAGGAGTGCCACTTCCAGTGCCAGTGCCAAG +
Preference number: 5 (lower is better)
Translates to: RTTLSWAYSPSGRAR*CPSPRSATSSASAK
Trigger: CTTGGCACTGGCACTGGAAGTGGCACTCCTGGGGCTAGGGCAGCAGCGGGCCCTGCCGGAGGGACTGTATGCCCAGGACAAAGTGGTGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GCGCCAGGCGGAAGGCCAGATCTGGGTCGTGGGGCAGCAGCGCAGTaGACAAGTATCGGGCACAGGTGTGCATGGGTACGCTCTCCCGGA +
Preference number: 5 (lower is better)
Translates to: APGGRPDLGRGAAAQ*TSIGHRCAWVRSPG
Trigger: TCCGGGAGAGCGTACCCATGCACACCTGTGCCCGATACTTGTTCACTGCGCTGCTGCCCCACGACCCAGATCTGGCCTTCCGCCTGGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp CACAGGCAGCCTCATGGCTCGGAGCGCCAGGCGGAAGGCCAGATCTaGGTCGTGGGGCAGCAGCGCAGTGAACAAGTATCGGGCACAGGT +
Preference number: 5 (lower is better)
Translates to: HRQPHGSERQAEGQI*VVGQQRSEQVSGTG
Trigger: ACCTGTGCCCGATACTTGTTCACTGCGCTGCTGCCCCACGACCCAGATCTGGCCTTCCGCCTGGCGCTCCGAGCCATGAGGCTGCCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GAACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCAGCATCTCCCGCACCTaGCTGAACATGGAGCGCAGC +
Preference number: 5 (lower is better)
Translates to: ERGPWLSACASHNRLEGSSISRT*LNMERS
Trigger: GCTGCGCTCCATGTTCAGCAAGGTGCGGGAGATGCT...GCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCGCCCACAGCACATCGTaGACTGCAGGGTGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAAAHSTS*TAGWLS
Trigger: AGACAGCCACCCTGCAGTCAACGATGTGCTGTGGGC...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GCACTCGATCCACAGCCCCACTCTGTAGCAGGTGCAGCCCACGGGTaGATGGTACCCGGGTGTCCTGCTCACCTTCTGGGGGCTGGTAGC +
Preference number: 5 (lower is better)
Translates to: ALDPQPHSVAGAAHG*MVPGCPAHLLGAGS
Trigger: GCTACCAGCCCCCAGAAGGTGAGCAGGACACCCGGGTACCATTCACCCGTGGGCTGCACCTGCTACAGAGTGGGGCTGTGGATCGAGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp TCCAGCAGGGCCAGTAGCTGTTCTTCATTGCGCACCACTTTGTCCTaGGCATACAGTCCCTCCGGCAGGGCCCGCTGCTGCCCTAGCCCC +
Preference number: 5 (lower is better)
Translates to: SSRASSCSSLRTTLS*AYSPSGRARCCPSP
Trigger: GGGGCTAGGGCAGCAGCGGGCCCTGCCGGAGGGACTGTATGCCCAGGACAAAGTGGTGCGCAATGAAGAACAGCTACTGGCCCTGCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp AGCCTCATGGCTCGGAGCGCCAGGCGGAAGGCCAGATCTGGGTCGTaGGGCAGCAGCGCAGTGAACAAGTATCGGGCACAGGTGTGCATG +
Preference number: 5 (lower is better)
Translates to: SLMARSARRKARSGS*GSSAVNKYRAQVCM
Trigger: CATGCACACCTGTGCCCGATACTTGTTCACTGCGCTGCTGCCCCACGACCCAGATCTGGCCTTCCGCCTGGCGCTCCGAGCCATGAGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp AGAGGCAGGCCTCGATGCTCCATATACCGTGCAACCGTGAAGAGGTaGGCGTGGCCGAGGCCACCGGCTGCAGCGTCCAGCACAATCTGG +
Preference number: 5 (lower is better)
Translates to: RGRPRCSIYRATVKR*AWPRPPAAASSTIW
Trigger: CCAGATTGTGCTGGACGCTGCAGCCGGTGGCCTCGGCCACGCCCACCTCTTCACGGTTGCACGGTATATGGAGCATCGAGGCCTGCCTCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GGGCACCAGCACGTGCTGGTAGGCCAGCTTTCGCTTCTCTGGGGCTaGGTCTGGGAAAAGAGAGTGAGGCTCCTCCTCCAGGCGACAGGC +
Preference number: 5 (lower is better)
Translates to: GHQHVLVGQLSLLWG*VWEKRVRLLLQATG
Trigger: GCCTGTCGCCTGGAGGAGGAGCCTCACTCTCTTTTCCCAGACTCAGCCCCAGAGAAGCGAAAGCTGGCCTACCAGCACGTGCTGGTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp AACGGGGTCCCTGGCTGTCTGCCTGTGCCTCCCACAACAGGCTGGAGGGCAGCCTGCAGGGTGGCTGTCTaGGTTGAAGGCAATGCTGAG +
Preference number: 5 (lower is better)
Translates to: NGVPGCLPVPPTTGWRAACRVAV*VEGNAE
Trigger: CTCAGCATTGCCTTCAACCAAGACAGCCACCCTGCA...GGCTGCCCTCCAGCCTGTTGTGGGAGGCACAGGCAGACAGCCAGGGACCCCGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp CAGAGCCTTGTGGGGATAACCATGGGCCCGCAAAGTATCCACCCGTaGACAGGCAGTAGGGAAAGGTTCGCCCAGCCAGATGGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: QSLVGITMGPQSIHP*TGSRERFAQPDGVA
Trigger: GGCCACCCCATCTGGCTGGGCGAACCTTTCCCTACTGCCTGTGCACGGGTGGATACTTTGCGGGCCCATGGTTATCCCCACAAGGCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp GTGCGGGCACAAGCCCAGAGCTCCTCTCGCCCAGCTGTATCTAGCTaGAGTCGCAGCAAAGTGGCATGCGTGGTGCCTGTCACTGCCACT +
Preference number: 5 (lower is better)
Translates to: VRAQAQSSSRPAVSS*SRSKVACVVPVTAT
Trigger: AGTGGCAGTGACAGGCACCACGCATGCCACTTTGCTGCGACTGCAGCTAGATACAGCTGGGCGAGAGGAGCTCTGGGCTTGTGCCCGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp ATGATGAGAGGGACAATGGCCGACAATTCGTGCCGCCCCAGCGAGTaGCTGAGGGAGCAGGCCCACAGCACATCGTTGACTGCAGGGTGG +
Preference number: 5 (lower is better)
Translates to: MMRGTMADNSCRPSE*LREQAHSTSLTAGW
Trigger: CCACCCTGCAGTCAACGATGTGCTGTGGGCCTGCTCCCTCAGCCACTCGCTGGGGCGGCACGAATTGTCGGCCATTGTCCCTCTCATCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp CTGTGCCTGCACCCGCTGTGGGATCTGGGGCACCATGAACCAGGTTaGTCTCAGAGCCCAGCAGGAGGATCTCGTCAGCAAGACGTTGGG +
Preference number: 5 (lower is better)
Translates to: LCLHPLWDLGHHEPG*SQSPAGGSRQQDVG
Trigger: CCCAACGTCTTGCTGACGAGATCCTCCTGCTGGGCTCTGAGATCAACCTGGTTCATGGTGCCCCAGATCCCACAGCGGGTGCAGGCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp TCCTCTCGCCCAGCTGTATCTAGCTGCAGTCGCAGCAAAGTGGCATaGGTGGTGCCTGTCACTGCCACTATGGTGACCGCCTCCACTGGG +
Preference number: 5 (lower is better)
Translates to: SSRPAVSSCSRSKVA*VVPVTATMVTASTG
Trigger: CCCAGTGGAGGCGGTCACCATAGTGGCAGTGACAGGCACCACGCATGCCACTTTGCTGCGACTGCAGCTAGATACAGCTGGGCGAGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GAAAGGTTCGCCCAGCCAGATGGGGTGGCCCTGAGGGTCAAAGGTTaGCTTGTCACTTCCCATACTGCCAGTGAGGGTGGGGCCACAGGA +
Preference number: 5 (lower is better)
Translates to: ERFAQPDGVALRVKG*LVTSHTASEGGATG
Trigger: TCCTGTGGCCCCACCCTCACTGGCAGTATGGGAAGTGACAAGCCAACCTTTGACCCTCAGGGCCACCCCATCTGGCTGGGCGAACCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GCACAGGCAGTAGGGAAAGGTTCGCCCAGCCAGATGGGGTGGCCCTaGGGGTCAAAGGTTGGCTTGTCACTTCCCATACTGCCAGTGAGG +
Preference number: 5 (lower is better)
Translates to: AQAVGKGSPSQMGWP*GSKVGLSLPILPVR
Trigger: CCTCACTGGCAGTATGGGAAGTGACAAGCCAACCTTTGACCCTCAGGGCCACCCCATCTGGCTGGGCGAACCTTTCCCTACTGCCTGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp GGGTCGTGGGGCAGCAGCGCAGTGAACAAGTATCGGGCACAGGTGTaGATGGGTACGCTCTCCCGGAAAATCACTTCTCCAAAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: GSWGSSAVNKYRAQV*MGTLSRKITSPKPL
Trigger: CAGCGGCTTTGGAGAAGTGATTTTCCGGGAGAGCGTACCCATGCACACCTGTGCCCGATACTTGTTCACTGCGCTGCTGCCCCACGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp AGGGAGCAGGCCCACAGCACATCGTTGACTGCAGGGTGGCTGTCTTaGTTGAAGGCAATGCTGAGTTGTGCCAAGGCTAGCGTGGCCAGC +
Preference number: 5 (lower is better)
Translates to: REQAHSTSLTAGWLS*LKAMLSCAKASVAS
Trigger: GCTGGCCACGCTAGCCTTGGCACAACTCAGCATTGCCTTCAACCAAGACAGCCACCCTGCAGTCAACGATGTGCTGTGGGCCTGCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GGCCAAGGCCTGGGATACAGGAAGGCCTGTCAGCAGCTGGGACTTGAGAGAGATCACAGCTGCCGGCACTaGTCTGTCATGCCAGCACCT +
Preference number: 5 (lower is better)
Translates to: GQGLGYRKACQQLGLERDHSCRH*SVMPAP
Trigger: AGGTGCTGGCATGACAGACAAGTGCCGGCAGCTGTG...ATCTCTCTCAAGTCCCAGCTGCTGACAGGCCTTCCTGTATCCCAGGCCTTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GGCCCTGAGGGTCAAAGGTTGGCTTGTCACTTCCCATACTGCCAGTaGGGGTGGGGCCACAGGAATCACTGGCCAGGATCCTCTGTAGGT +
Preference number: 5 (lower is better)
Translates to: GPEGQRLACHFPYCQ*GWGHRNHWPGSSVG
Trigger: ACCTACAGAGGATCCTGGCCAGTGATTCCTGTGGCCCCACCCTCACTGGCAGTATGGGAAGTGACAAGCCAACCTTTGACCCTCAGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GCTTGTAGCTCTCAAGCTGGTGTCGCCTCTGCAGGCGCAGGGTGTTaGTTATGGCACACGCCAGCCGCAGAGCCTTGTGGGGATAACCAT +
Preference number: 5 (lower is better)
Translates to: ACSSQAGVASAGAGC*LWHTPAAEPCGDNH
Trigger: ATGGTTATCCCCACAAGGCTCTGCGGCTGGCGTGTGCCATAATCAACACCCTGCGCCTGCAGAGGCGACACCAGCTTGAGAGCTACAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GGGGGCTGGCGGCTGTCACCTCTTCTTCATCCTCTGAGCCTGTCCTaGAGGTTAGAGCAGGCTGTAGGCTGGGGATGTCCAAGGAATAGT +
Preference number: 5 (lower is better)
Translates to: GGWRLSPLLHPLSLS*RLEQAVGWGCPRNS
Trigger: ACTATTCCTTGGACATCCCCAGCCTACAGCCTGCTCTAACCTCCAGGACAGGCTCAGAGGATGAAGAAGAGGTGACAGCCGCCAGCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GCTGCACTGAGTTGGAGGCCTAACTTCACTCTGGCCCAGCCCTTCTCCTGGAAGACCGCATGCAGCCACTaGGTATCTCCTTTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: AALSWRPNFTLAQPFSWKTACSH*VSPLAA
Trigger: GGCTGCCAAAGGAGATACCAAGTGGCTGCATGCGGT...CTTCCAGGAGAAGGGCTGGGCCAGAGTGAAGTTAGGCCTCCAACTCAGTGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp CCCTGGGAGTCTGGAAGAGCCAGAGCTTGCTTCTTCCGTGTGAGGTGCCCAGGCGGGTGGCTGTCTTGGTaGAAGGCAATGCTGAGTTGT +
Preference number: 5 (lower is better)
Translates to: PWESGRARACFFRVRCPGGWLSW*KAMLSC
Trigger: ACAACTCAGCATTGCCTTCAACCAAGACAGCCACCC...GCCTGGGCACCTCACACGGAAGAAGCAAGCTCTGGCTCTTCCAGACTCCCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GAGTGGCTGGTGGTTATGTACGCGGCTACTGCGGCATCCAGAAGCTaGCAAAGTGGTGCCCTGTCAGTCCCTAGTGGTTTGGTAGCCCTG +
Preference number: 5 (lower is better)
Translates to: EWLVVMYAATAASRS*QSGALSVPSGLVAL
Trigger: CAGGGCTACCAAACCACTAGGGACTGACAGGGCACCACTTTGTCAGCTTCTGGATGCCGCAGTAGCCGCGTACATAACCACCAGCCACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp CAGGAATCACTGGCCAGGATCCTCTGTAGGTGGCTGTCATTCCAGTaGAACTCTCCAGCCTGCAGTGCTCGGCTGAAAACTGTCCTGCGG +
Preference number: 5 (lower is better)
Translates to: QESLARILCRWLSFQ*NSPACSARLKTVLR
Trigger: CCGCAGGACAGTTTTCAGCCGAGCACTGCAGGCTGGAGAGTTGCACTGGAATGACAGCCACCTACAGAGGATCCTGGCCAGTGATTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GTCTTGCAGGCATCCTGTGCCAACTTGAAGAGCAGGGCTGGGGAGTaGATATTTTGCTGGACGGAGCCCAGAACCGCATGCAGCCACTTG +
Preference number: 5 (lower is better)
Translates to: VLQASCANLKSRAGE*IFCWTEPRTACSHL
Trigger: CAAGTGGCTGCATGCGGTTCTGGGCTCCGTCCAGCAAAATATCCACTCCCCAGCCCTGCTCTTCAAGTTGGCACAGGATGCCTGCAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GGCATGCGTGGTGCCTGTCACTGCCACTATGGTGACCGCCTCCACTaGGGTGAACAAGGAGTACCAGTTCTTCATGATGCTCATCAGCGC +
Preference number: 5 (lower is better)
Translates to: GMRGACHCHYGDRLH*GEQGVPVLHDAHQR
Trigger: GCGCTGATGAGCATCATGAAGAACTGGTACTCCTTGTTCACCCCAGTGGAGGCGGTCACCATAGTGGCAGTGACAGGCACCACGCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GTGAGGTATGTGGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCTCCAGCGGGGAATGTaGTCTCCAGCACAGGCAGCC +
Preference number: 5 (lower is better)
Translates to: VRYVAEAQDLLISFSGVRLQRGM*SPAQAA
Trigger: GGCTGCCTGTGCTGGAGACAACATTCCCCGCTGGAG...CCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCCACATACCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCGCTGGAGTGGCTGTCTaGCAGGCATCCTGTGCCAAC +
Preference number: 5 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASAGVAV*QASCAN
Trigger: GTTGGCACAGGATGCCTGCAAGACAGCCACTCCAGC...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GCGGTCAAAGCTGATGGAGACGTGGTAGAGATGCTCTGGCTCTCCTaGGCCCCCAACTTCTCGAATATTCCCACTCAGGTGGAACCCTAC +
Preference number: 5 (lower is better)
Translates to: AVKADGDVVEMLWLS*APNFSNIPTQVEPY
Trigger: GTAGGGTTCCACCTGAGTGGGAATATTCGAGAAGTTGGGGGCCCAGGAGAGCCAGAGCATCTCTACCACGTCTCCATCAGCTTTGACCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GGTGAACAAGGAGTACCAGTTCTTCATGATGCTCATCAGCGCTGGTaGGCCAATCTCCGTGGCGCAGCTAACCAGCCAGCGAACCATCTC +
Preference number: 5 (lower is better)
Translates to: GEQGVPVLHDAHQRW*ANLRGAANQPANHL
Trigger: GAGATGGTTCGCTGGCTGGTTAGCTGCGCCACGGAGATTGGCCCACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCCTTGTTCACC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp TGGGGTGAACAAGGAGTACCAGTTCTTCATGATGCTCATCAGCGCTaGTGGGCCAATCTCCGTGGCGCAGCTAACCAGCCAGCGAACCAT +
Preference number: 5 (lower is better)
Translates to: WGEQGVPVLHDAHQR*WANLRGAANQPANH
Trigger: ATGGTTCGCTGGCTGGTTAGCTGCGCCACGGAGATTGGCCCACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCCTTGTTCACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp GAGAGTGTCCAGCGTCGCAGGATGTCTGAGAGCATGGGTGCACAGTaGATGCTTCGGATGATGAGAGGGACAATGGCCGACAATTCGTGC +
Preference number: 5 (lower is better)
Translates to: ESVQRRRMSESMGAQ*MLRMMRGTMADNSC
Trigger: GCACGAATTGTCGGCCATTGTCCCTCTCATCATCCGAAGCATCCACTGTGCACCCATGCTCTCAGACATCCTGCGACGCTGGACACTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp GACAGCAGCTGTTTCACCTGCTCTTGGATCTGCTCCTCATCCAGATaGCAACAGTTGGCATCTTCTGTGCCTGCACCCGCTGTGGGATCT +
Preference number: 5 (lower is better)
Translates to: DSSCFTCSWICSSSR*QQLASSVPAPAVGS
Trigger: AGATCCCACAGCGGGTGCAGGCACAGAAGATGCCAACTGTTGGCATCTGGATGAGGAGCAGATCCAAGAGCAGGTGAAACAGCTGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp TCTTCCAGTGGGCACACATCTAGCTTGTCCCATGTGCCAAGTAGCTaGAGCCATCCCGACCGCTCATCTGGTTTGCAGTGTGGGCTCAAA +
Preference number: 5 (lower is better)
Translates to: SSSGHTSSLSHVPSS*SHPDRSSGLQCGLK
Trigger: TTTGAGCCCACACTGCAAACCAGATGAGCGGTCGGGATGGCTGCAGCTACTTGGCACATGGGACAAGCTAGATGTGTGCCCACTGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp TCCTGTGCCAACTTGAAGAGCAGGGCTGGGGAGTGGATATTTTGCTaGACGGAGCCCAGAACCGCATGCAGCCACTTGGTATCTCCTTTG +
Preference number: 5 (lower is better)
Translates to: SCANLKSRAGEWIFC*TEPRTACSHLVSPL
Trigger: CAAAGGAGATACCAAGTGGCTGCATGCGGTTCTGGGCTCCGTCCAGCAAAATATCCACTCCCCAGCCCTGCTCTTCAAGTTGGCACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GTTTGTCTGCACACTCCTAGGCACACACCTGGAATGATGTCACCCTCTGCCTCCTCATTGCGCACCACTTaGTCCTGGGCATACAGTCCC +
Preference number: 5 (lower is better)
Translates to: VCLHTPRHTPGMMSPSASSLRTT*SWAYSP
Trigger: GGGACTGTATGCCCAGGACAAAGTGGTGCGCAATGA...GGAGGCAGAGGGTGACATCATTCCAGGTGTGTGCCTAGGAGTGTGCAGACAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 90 bp GATGAGATACTGCACAAACTTCTGAAGCTGATCCCGGTTCATTTGTaGCAGAGTCTCAGAGATGGGCAGCCGCAGCTCCACCTGGCGAGC +
Preference number: 5 (lower is better)
Translates to: DEILHKLLKLIPVHL*QSLRDGQPQLHLAS
Trigger: GCTCGCCAGGTGGAGCTGCGGCTGCCCATCTCTGAGACTCTGTCACAAATGAACCGGGATCAGCTTCAGAAGTTTGTGCAGTATCTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 90 bp CTTCATCCTCTGAGCCTGTCCTGGAGGTTAGAGCAGGCTGTAGGCTaGGGATGTCCAAGGAATAGTTGCCTTCTTCCAGTGGGCACACAT +
Preference number: 5 (lower is better)
Translates to: LHPLSLSWRLEQAVG*GCPRNSCLLPVGTH
Trigger: ATGTGTGCCCACTGGAAGAAGGCAACTATTCCTTGGACATCCCCAGCCTACAGCCTGCTCTAACCTCCAGGACAGGCTCAGAGGATGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGGGGCACACATCTAGCTaGTCCCATGTGCCAAGTAGC +
Preference number: 5 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLGHTSS*SHVPSS
Trigger: GCTACTTGGCACATGGGACAAGCTAGATGTGTGCCC...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS-3UTR CAA 90 bp GGCAGAGGCCCAAGACCTCTTAATATCCTTCAGTGGGGTGAGGCATTTGTGCTGTGGGGAGTGGATATTTaGCTGGACGGAGCCCAGAAC +
Preference number: 5 (lower is better)
Translates to: GRGPRPLNILQWGEAFVLWGVDI*LDGAQN
Trigger: GTTCTGGGCTCCGTCCAGCAAAATATCCACTCCCCA...CAGCACAAATGCCTCACCCCACTGAAGGATATTAAGAGGTCTTGGGCCTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 90 bp TGGAGGTTAGAGCAGGCTGTAGGCTGGGGATGTCCAAGGAATAGTTaGCTTCTTCCAGTGGGCACACATCTAGCTTGTCCCATGTGCCAA +
Preference number: 5 (lower is better)
Translates to: WRLEQAVGWGCPRNS*LLPVGTHLACPMCQ
Trigger: TTGGCACATGGGACAAGCTAGATGTGTGCCCACTGGAAGAAGGCAACTATTCCTTGGACATCCCCAGCCTACAGCCTGCTCTAACCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCCGAGCTCCAGCGCGATGCCCAGCAGCACGGTGTCTaGCGGTGCGCTGGCTGGAGTGGCTGTCTTGCAGGC +
Preference number: 6 (lower is better)
Translates to: AELQRDAQQHGV*RCAGWSGCLAG
Trigger: GCCTGCAAGACAGCCACTCCAGCCAGCGCACCGCCAGACACCGTGCTGCTGGGCATCGCGCTGGAGCTCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp TCATCCGCATCACCTGCAGGCCGAGCTCCAGCGCGATaGCCAGCAGCACGGTGTCTGGCGGTGCGCTGGCTG +
Preference number: 6 (lower is better)
Translates to: SSASPAGRAPAR*PAARCLAVRWL
Trigger: CAGCCAGCGCACCGCCAGACACCGTGCTGCTGGGCATCGCGCTGGAGCTCGGCCTGCAGGTGATGCGGATGA
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 90 bp AACCTTTCCTCCACCTGCTCGAAGGCCCAGCTCTCGGCCACCCGCTaGGCGCTAAGGTCCAACAACGGCTCGGGGCGACTGCGACGGGCC +
Preference number: 6 (lower is better)
Translates to: NLSSTCSKAQLSATR*ALRSNNGSGRLRRA
Trigger: GGCCCGTCGCAGTCGCCCCGAGCCGTTGTTGGACCTTAGCGCCAAGCGGGTGGCCGAGAGCTGGGCCTTCGAGCAGGTGGAGGAAAGGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp TCCTGGGCATACAGTCCCTCCGGCAGGGCCCGCTGCTaGCCTAGCCCCAGGAGTGCCACTTCCAGTGCCAGT +
Preference number: 6 (lower is better)
Translates to: SWAYSPSGRARC*PSPRSATSSAS
Trigger: ACTGGCACTGGAAGTGGCACTCCTGGGGCTAGGGCAGCAGCGGGCCCTGCCGGAGGGACTGTATGCCCAGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp TTGTCCTGGGCATACAGTCCCTCCGGCAGGGCCCGCTaGTGCCCTAGCCCCAGGAGTGCCACTTCCAGTGCC +
Preference number: 6 (lower is better)
Translates to: LSWAYSPSGRAR*CPSPRSATSSA
Trigger: GGCACTGGAAGTGGCACTCCTGGGGCTAGGGCAGCAGCGGGCCCTGCCGGAGGGACTGTATGCCCAGGACAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CTCCAGCGCGATGCCCAGCAGCACGGTGTCTGGCGGTaGGCTGGCTGGAGTGGCTGTCTTGCAGGCATCCTG +
Preference number: 6 (lower is better)
Translates to: LQRDAQQHGVWR*AGWSGCLAGIL
Trigger: CAGGATGCCTGCAAGACAGCCACTCCAGCCAGCGCACCGCCAGACACCGTGCTGCTGGGCATCGCGCTGGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCGCGATGCCCAGCAGCACGGTGTCTGGCGGTGCGCTaGCTGGAGTGGCTGTCTTGCAGGCATCCTGTGCCA +
Preference number: 6 (lower is better)
Translates to: ARCPAARCLAVR*LEWLSCRHPVP
Trigger: TGGCACAGGATGCCTGCAAGACAGCCACTCCAGCCAGCGCACCGCCAGACACCGTGCTGCTGGGCATCGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 72 bp TCCACCTGCTCGAAGGCCCAGCTCTCGGCCACCCGCTaGGCGCTAAGGTCCAACAACGGCTCGGGGCGACTG +
Preference number: 6 (lower is better)
Translates to: STCSKAQLSATR*ALRSNNGSGRL
Trigger: CAGTCGCCCCGAGCCGTTGTTGGACCTTAGCGCCAAGCGGGTGGCCGAGAGCTGGGCCTTCGAGCAGGTGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCTCGGAGCGCCAGGCGGAAGGCCAGATCTGGGTCGTaGGGCAGCAGCGCAGTGAACAAGTATCGGGCACAG +
Preference number: 6 (lower is better)
Translates to: ARSARRKARSGS*GSSAVNKYRAQ
Trigger: CTGTGCCCGATACTTGTTCACTGCGCTGCTGCCCCACGACCCAGATCTGGCCTTCCGCCTGGCGCTCCGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp CCACAGCCCCACTCTGTAGCAGGTGCAGCCCACGGGTaGATGGTACCCGGGTGTCCTGCTCACCTTCTGGGG +
Preference number: 6 (lower is better)
Translates to: PQPHSVAGAAHG*MVPGCPAHLLG
Trigger: CCCCAGAAGGTGAGCAGGACACCCGGGTACCATTCACCCGTGGGCTGCACCTGCTACAGAGTGGGGCTGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp TGGGCAGCCGCAGCTCCACCTGGCGAGCATGACGGATaGGGTACAATGACAGCGCCACCACGTGGGCACAGT +
Preference number: 6 (lower is better)
Translates to: WAAAAPPGEHDG*GTMTAPPRGHS
Trigger: ACTGTGCCCACGTGGTGGCGCTGTCATTGTACCGCATCCGTCATGCTCGCCAGGTGGAGCTGCGGCTGCCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp CCTCATGGCTCGGAGCGCCAGGCGGAAGGCCAGATCTaGGTCGTGGGGCAGCAGCGCAGTGAACAAGTATCG +
Preference number: 6 (lower is better)
Translates to: PHGSERQAEGQI*VVGQQRSEQVS
Trigger: CGATACTTGTTCACTGCGCTGCTGCCCCACGACCCAGATCTGGCCTTCCGCCTGGCGCTCCGAGCCATGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 72 bp TCCTTCCAGCAGCAGCCCAGCCTGCTTTCGCAGCACTaGCACCAGCCGCTCGTCCAGCTCCACCTCCTCCAG +
Preference number: 6 (lower is better)
Translates to: SFQQQPSLLSQH*HQPLVQLHLLQ
Trigger: CTGGAGGAGGTGGAGCTGGACGAGCGGCTGGTGCAAGTGCTGCGAAAGCAGGCTGGGCTGCTGCTGGAAGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CTTCGGATGATGAGAGGGACAATGGCCGACAATTCGTaGCGCCCCAGCGAGTGGCTGAGGGAGCAGGCCCAC +
Preference number: 6 (lower is better)
Translates to: LRMMRGTMADNS*RPSEWLREQAH
Trigger: GTGGGCCTGCTCCCTCAGCCACTCGCTGGGGCGGCACGAATTGTCGGCCATTGTCCCTCTCATCATCCGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GGGACAATGGCCGACAATTCGTGCCGCCCCAGCGAGTaGCTGAGGGAGCAGGCCCACAGCACATCGTTGACT +
Preference number: 6 (lower is better)
Translates to: GTMADNSCRPSE*LREQAHSTSLT
Trigger: AGTCAACGATGTGCTGTGGGCCTGCTCCCTCAGCCACTCGCTGGGGCGGCACGAATTGTCGGCCATTGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 90 bp ACCTCCTCCAGCAGGGCCAGTAGCTGTTCTTCATTGCGCACCACTTaGTCCTGGGCATACAGTCCCTCCGGCAGGGCCCGCTGCTGCCCT +
Preference number: 6 (lower is better)
Translates to: TSSSRASSCSSLRTT*SWAYSPSGRARCCP
Trigger: AGGGCAGCAGCGGGCCCTGCCGGAGGGACTGTATGCCCAGGACAAAGTGGTGCGCAATGAAGAACAGCTACTGGCCCTGCTGGAGGAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp TCTCAAGCTGGTGTCGCCTCTGCAGGCGCAGGGTGTTaGTTATGGCACACGCCAGCCGCAGAGCCTTGTGGG +
Preference number: 6 (lower is better)
Translates to: SQAGVASAGAGC*LWHTPAAEPCG
Trigger: CCCACAAGGCTCTGCGGCTGGCGTGTGCCATAATCAACACCCTGCGCCTGCAGAGGCGACACCAGCTTGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCCCAGCCAGATGGGGTGGCCCTGAGGGTCAAAGGTTaGCTTGTCACTTCCCATACTGCCAGTGAGGGTGGG +
Preference number: 6 (lower is better)
Translates to: AQPDGVALRVKG*LVTSHTASEGG
Trigger: CCCACCCTCACTGGCAGTATGGGAAGTGACAAGCCAACCTTTGACCCTCAGGGCCACCCCATCTGGCTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 72 bp CTCTCAAGCTGGTGTCGCCTCTGCAGGCGCAGGGTGTaGATTATGGCACACGCCAGCCGCAGAGCCTTGTGG +
Preference number: 6 (lower is better)
Translates to: LSSWCRLCRRRV*IMAHASRRALW
Trigger: CCACAAGGCTCTGCGGCTGGCGTGTGCCATAATCAACACCCTGCGCCTGCAGAGGCGACACCAGCTTGAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 72 bp AGCAGGGCCAGTAGCTGTTCTTCATTGCGCACCACTTaGTCCTGGGCATACAGTCCCTCCGGCAGGGCCCGC +
Preference number: 6 (lower is better)
Translates to: SRASSCSSLRTT*SWAYSPSGRAR
Trigger: GCGGGCCCTGCCGGAGGGACTGTATGCCCAGGACAAAGTGGTGCGCAATGAAGAACAGCTACTGGCCCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 72 bp CCAGTGGGTTGGGGTGAGATTCTCCAGCGGGGAATGTaGTCTCCAGCACAGGCAGCCTCATGGCTCGGAGCG +
Preference number: 6 (lower is better)
Translates to: PVGWGEILQRGM*SPAQAASWLGA
Trigger: CGCTCCGAGCCATGAGGCTGCCTGTGCTGGAGACAACATTCCCCGCTGGAGAATCTCACCCCAACCCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp TCTGTGCCTGCACCCGCTGTGGGATCTGGGGCACCATaGACCAGGTTGATCTCAGAGCCCAGCAGGAGGATC +
Preference number: 6 (lower is better)
Translates to: SVPAPAVGSGAP*TRLISEPSRRI
Trigger: GATCCTCCTGCTGGGCTCTGAGATCAACCTGGTTCATGGTGCCCCAGATCCCACAGCGGGTGCAGGCACAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CAAGCCCAGAGCTCCTCTCGCCCAGCTGTATCTAGCTaGAGTCGCAGCAAAGTGGCATGCGTGGTGCCTGTC +
Preference number: 6 (lower is better)
Translates to: QAQSSSRPAVSS*SRSKVACVVPV
Trigger: GACAGGCACCACGCATGCCACTTTGCTGCGACTGCAGCTAGATACAGCTGGGCGAGAGGAGCTCTGGGCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp CACGTGCTGGTAGGCCAGCTTTCGCTTCTCTGGGGCTaGGTCTGGGAAAAGAGAGTGAGGCTCCTCCTCCAG +
Preference number: 6 (lower is better)
Translates to: HVLVGQLSLLWG*VWEKRVRLLLQ
Trigger: CTGGAGGAGGAGCCTCACTCTCTTTTCCCAGACTCAGCCCCAGAGAAGCGAAAGCTGGCCTACCAGCACGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp GTGGGGATAACCATGGGCCCGCAAAGTATCCACCCGTaGACAGGCAGTAGGGAAAGGTTCGCCCAGCCAGAT +
Preference number: 6 (lower is better)
Translates to: VGITMGPQSIHP*TGSRERFAQPD
Trigger: ATCTGGCTGGGCGAACCTTTCCCTACTGCCTGTGCACGGGTGGATACTTTGCGGGCCCATGGTTATCCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CAGTCGCAGCAAAGTGGCATGCGTGGTGCCTGTCACTaGCACTATGGTGACCGCCTCCACTGGGGTGAACAA +
Preference number: 6 (lower is better)
Translates to: QSQQSGMRGACH*HYGDRLHWGEQ
Trigger: TTGTTCACCCCAGTGGAGGCGGTCACCATAGTGGCAGTGACAGGCACCACGCATGCCACTTTGCTGCGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CCAGCTGTATCTAGCTGCAGTCGCAGCAAAGTGGCATaGGTGGTGCCTGTCACTGCCACTATGGTGACCGCC +
Preference number: 6 (lower is better)
Translates to: PAVSSCSRSKVA*VVPVTATMVTA
Trigger: GGCGGTCACCATAGTGGCAGTGACAGGCACCACGCATGCCACTTTGCTGCGACTGCAGCTAGATACAGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp GAGGCGAGAGTGGCTGGTGGTTATGTACGCGGCTACTaGGGCATCCAGAAGCTGACAAAGTGGTGCCCTGTC +
Preference number: 6 (lower is better)
Translates to: EARVAGGYVRGY*GIQKLTKWCPV
Trigger: GACAGGGCACCACTTTGTCAGCTTCTGGATGCCGCAGTAGCCGCGTACATAACCACCAGCCACTCTCGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GTTGGCATCTTCTGTGCCTGCACCCGCTGTGGGATCTaGGGCACCATGAACCAGGTTGATCTCAGAGCCCAG +
Preference number: 6 (lower is better)
Translates to: VGIFCACTRCGI*GTMNQVDLRAQ
Trigger: CTGGGCTCTGAGATCAACCTGGTTCATGGTGCCCCAGATCCCACAGCGGGTGCAGGCACAGAAGATGCCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GGAGTACCAGTTCTTCATGATGCTCATCAGCGCTGGTaGGCCAATCTCCGTGGCGCAGCTAACCAGCCAGCG +
Preference number: 6 (lower is better)
Translates to: GVPVLHDAHQRW*ANLRGAANQPA
Trigger: CGCTGGCTGGTTAGCTGCGCCACGGAGATTGGCCCACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 90 bp GGCATCCTGTGCCAACTTGAAGAGCAGGGCTGGGGAGTGGATATTTaGCTGGACGGAGCCCAGAACCGCATGCAGCCACTTGGTATCTCC +
Preference number: 6 (lower is better)
Translates to: GILCQLEEQGWGVDI*LDGAQNRMQPLGIS
Trigger: GGAGATACCAAGTGGCTGCATGCGGTTCTGGGCTCCGTCCAGCAAAATATCCACTCCCCAGCCCTGCTCTTCAAGTTGGCACAGGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp GTAGGGAAAGGTTCGCCCAGCCAGATGGGGTGGCCCTaGGGGTCAAAGGTTGGCTTGTCACTTCCCATACTG +
Preference number: 6 (lower is better)
Translates to: VGKGSPSQMGWP*GSKVGLSLPIL
Trigger: CAGTATGGGAAGTGACAAGCCAACCTTTGACCCTCAGGGCCACCCCATCTGGCTGGGCGAACCTTTCCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp TCTCCCGCTCACTTCGTGGAAAAGACCAGAACACAATaGGCTTCTGAACCGGTTCCGGCACCCGGGAGAACC +
Preference number: 6 (lower is better)
Translates to: SPAHFVEKTRTQ*ASEPVPAPGRT
Trigger: GGTTCTCCCGGGTGCCGGAACCGGTTCAGAAGCGCATTGTGTTCTGGTCTTTTCCACGAAGTGAGCGGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCATCCTGTGCCAACTTGAAGAGCAGGGCTGGGGAGTaGATATTTTGCTGGACGGAGCCCAGAACCGCATGC +
Preference number: 6 (lower is better)
Translates to: ASCANLKSRAGE*IFCWTEPRTAC
Trigger: GCATGCGGTTCTGGGCTCCGTCCAGCAAAATATCCACTCCCCAGCCCTGCTCTTCAAGTTGGCACAGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp AGGGAGCAGGCCCACAGCACATCGTTGACTGCAGGGTaGCTGTCTTGGTTGAAGGCAATGCTGAGTTGTGCC +
Preference number: 6 (lower is better)
Translates to: REQAHSTSLTAG*LSWLKAMLSCA
Trigger: GGCACAACTCAGCATTGCCTTCAACCAAGACAGCCACCCTGCAGTCAACGATGTGCTGTGGGCCTGCTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp CAGCGTCGCAGGATGTCTGAGAGCATGGGTGCACAGTaGATGCTTCGGATGATGAGAGGGACAATGGCCGAC +
Preference number: 6 (lower is better)
Translates to: QRRRMSESMGAQ*MLRMMRGTMAD
Trigger: GTCGGCCATTGTCCCTCTCATCATCCGAAGCATCCACTGTGCACCCATGCTCTCAGACATCCTGCGACGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp GGGCACACATCTAGCTTGTCCCATGTGCCAAGTAGCTaGAGCCATCCCGACCGCTCATCTGGTTTGCAGTGT +
Preference number: 6 (lower is better)
Translates to: GHTSSLSHVPSS*SHPDRSSGLQC
Trigger: ACACTGCAAACCAGATGAGCGGTCGGGATGGCTGCAGCTACTTGGCACATGGGACAAGCTAGATGTGTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CTTCTTCCAGTGGGCACACATCTAGCTTGTCCCATGTaGCAAGTAGCTGCAGCCATCCCGACCGCTCATCTG +
Preference number: 6 (lower is better)
Translates to: LLPVGTHLACPM*QVAAAIPTAHL
Trigger: CAGATGAGCGGTCGGGATGGCTGCAGCTACTTGGCACATGGGACAAGCTAGATGTGTGCCCACTGGAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp CTGGCCAGGATCCTCTGTAGGTGGCTGTCATTCCAGTaGAACTCTCCAGCCTGCAGTGCTCGGCTGAAAACT +
Preference number: 6 (lower is better)
Translates to: LARILCRWLSFQ*NSPACSARLKT
Trigger: AGTTTTCAGCCGAGCACTGCAGGCTGGAGAGTTGCACTGGAATGACAGCCACCTACAGAGGATCCTGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp GGCAGCAGCGCAGTGAACAAGTATCGGGCACAGGTGTaGATGGGTACGCTCTCCCGGAAAATCACTTCTCCA +
Preference number: 6 (lower is better)
Translates to: GSSAVNKYRAQV*MGTLSRKITSP
Trigger: TGGAGAAGTGATTTTCCGGGAGAGCGTACCCATGCACACCTGTGCCCGATACTTGTTCACTGCGCTGCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCTGATGGAGACGTGGTAGAGATGCTCTGGCTCTCCTaGGCCCCCAACTTCTCGAATATTCCCACTCAGGTG +
Preference number: 6 (lower is better)
Translates to: ADGDVVEMLWLS*APNFSNIPTQV
Trigger: CACCTGAGTGGGAATATTCGAGAAGTTGGGGGCCCAGGAGAGCCAGAGCATCTCTACCACGTCTCCATCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp CAAGGAGTACCAGTTCTTCATGATGCTCATCAGCGCTaGTGGGCCAATCTCCGTGGCGCAGCTAACCAGCCA +
Preference number: 6 (lower is better)
Translates to: QGVPVLHDAHQR*WANLRGAANQP
Trigger: TGGCTGGTTAGCTGCGCCACGGAGATTGGCCCACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp GCCCACAGCACATCGTTGACTGCAGGGTGGCTGTCTTaGTTGAAGGCAATGCTGAGTTGTGCCAAGGCTAGC +
Preference number: 6 (lower is better)
Translates to: AHSTSLTAGWLS*LKAMLSCAKAS
Trigger: GCTAGCCTTGGCACAACTCAGCATTGCCTTCAACCAAGACAGCCACCCTGCAGTCAACGATGTGCTGTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp TCACTTCGTGGAAAAGACCAGAACACAATGCGCTTCTaGACCGGTTCCGGCACCCGGGAGAACCTTTCCTCC +
Preference number: 6 (lower is better)
Translates to: SLRGKDQNTMRF*TGSGTRENLSS
Trigger: GGAGGAAAGGTTCTCCCGGGTGCCGGAACCGGTTCAGAAGCGCATTGTGTTCTGGTCTTTTCCACGAAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp GAGCAGGCTGTAGGCTGGGGATGTCCAAGGAATAGTTaGCTTCTTCCAGTGGGCACACATCTAGCTTGTCCC +
Preference number: 6 (lower is better)
Translates to: EQAVGWGCPRNS*LLPVGTHLACP
Trigger: GGGACAAGCTAGATGTGTGCCCACTGGAAGAAGGCAACTATTCCTTGGACATCCCCAGCCTACAGCCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CCA 72 bp AACTTGAAGAGCAGGGCTGGGGAGTGGATATTTTGCTaGACGGAGCCCAGAACCGCATGCAGCCACTTGGTA +
Preference number: 6 (lower is better)
Translates to: NLKSRAGEWIFC*TEPRTACSHLV
Trigger: TACCAAGTGGCTGCATGCGGTTCTGGGCTCCGTCCAGCAAAATATCCACTCCCCAGCCCTGCTCTTCAAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS CAA 72 bp CACAGCACATCGTTGACTGCAGGGTGGCTGTCTTGGTaGAAGGCAATGCTGAGTTGTGCCAAGGCTAGCGTG +
Preference number: 6 (lower is better)
Translates to: HSTSLTAGWLSW*KAMLSCAKASV
Trigger: CACGCTAGCCTTGGCACAACTCAGCATTGCCTTCAACCAAGACAGCCACCCTGCAGTCAACGATGTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS TCA 72 bp CTGCACAAACTTCTGAAGCTGATCCCGGTTCATTTGTaGCAGAGTCTCAGAGATGGGCAGCCGCAGCTCCAC +
Preference number: 6 (lower is better)
Translates to: LHKLLKLIPVHL*QSLRDGQPQLH
Trigger: GTGGAGCTGCGGCTGCCCATCTCTGAGACTCTGTCACAAATGAACCGGGATCAGCTTCAGAAGTTTGTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7
CDS GCA 72 bp TGTTTCACCTGCTCTTGGATCTGCTCCTCATCCAGATaGCAACAGTTGGCATCTTCTGTGCCTGCACCCGCT +
Preference number: 6 (lower is better)
Translates to: CFTCSWICSSSR*QQLASSVPAPA
Trigger: AGCGGGTGCAGGCACAGAAGATGCCAACTGTTGGCATCTGGATGAGGAGCAGATCCAAGAGCAGGTGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039480.7