Pregenerated sensors for ZSWIM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017764Ensembl transcript IDs: ENSMUST00000017908.3, ENSMUST00000132282.2
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGGGGAGGCTCCAGGGCCAGTGTCAGGTGAATCACATCACGGGTaGGCAGGAGTTACCAACACAGAACCTTCAGCCTCACCACCCACT | + |
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Preference number: 1 (lower is better) Translates to: CGEAPGPVSGESHHG*AGVTNTEPSASPPT Trigger: AGTGGGTGGTGAGGCTGAAGGTTCTGTGTTGGTAACTCCTGCTCACCCGTGATGTGATTCACCTGACACTGGCCCTGGAGCCTCCCCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGACATTCACTTTATTGATCCCAGGTGGGACAGGAGAACTGGGAAGCTTGACCCTCACCATAGTCTCTaGCTTTGTGGGGAGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: QDIHFIDPRWDRRTGKLDPHHSL*LCGEAP Trigger: TGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGG...GTCAAGCTTCCCAGTTCTCCTGTCCCACCTGGGATCAATAAAGTGAATGTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR-3UTR TCA 90 bp | CAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGATGCTCGTATGTGTGTaGACTCAGAGCACAAATACA | + |
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Preference number: 2 (lower is better) Translates to: QLSKMKPECTADCIWPSKMLVCV*TQSTNT Trigger: TGTATTTGTGCTCTGAGTTCACACACATACGAGCAT...CTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR-3UTR GCA 90 bp | TCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCAAAATGAAGCCAGAATaGACAGCAGACTGTATTTGG | + |
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Preference number: 2 (lower is better) Translates to: SPPTISLKESPVSRNFWSKMKPE*TADCIW Trigger: CCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTT...GCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR TCA 72 bp | CTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTaGATCACATCACGGGTGAGCAGGAGTTACCAACAC | + |
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Preference number: 3 (lower is better) Translates to: LPLWGGSRASVR*ITSRVSRSYQH Trigger: GTGTTGGTAACTCCTGCTCACCCGTGATGTGATTCACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR TCA 72 bp | GCTCCAGGGCCAGTGTCAGGTGAATCACATCACGGGTaGGCAGGAGTTACCAACACAGAACCTTCAGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: APGPVSGESHHG*AGVTNTEPSAS Trigger: TGAGGCTGAAGGTTCTGTGTTGGTAACTCCTGCTCACCCGTGATGTGATTCACCTGACACTGGCCCTGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR CCA 72 bp | GTTCTAGACAAGAGGCTGGGGCAGAGCAGAAGCCTTTaGAAGCAAGCACAGAGGGAAGGACGTGAATGCTCG | + |
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Preference number: 3 (lower is better) Translates to: VLDKRLGQSRSL*KQAQREGRECS Trigger: CGAGCATTCACGTCCTTCCCTCTGTGCTTGCTTCCAAAGGCTTCTGCTCTGCCCCAGCCTCTTGTCTAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR-3UTR CAA 90 bp | CACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTGAATCAAAATACAATCAGAAGTaGAGCCTACTGACTCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: HHSLCLCGEAPGPVSGESKYNQK*SLLTQA Trigger: AGCCTGAGTCAGTAGGCTCAACTTCTGATTGTATTT...TGATTCACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | CTTGACGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCGGAGCCGGAGCCAATaGGGTGCATGGATTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LDGLTIVSAFVGRLQGQCRSRSQ*GAWISG Trigger: TCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCG...ACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCGTCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTAGGTGCATGGATTTCTaGACGACCGCAAGCTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: RPHHSLCLCGEAPGPVSGRCMDF*TTASSP Trigger: AGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCT...ACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | AGAGGCAGTAGTAGAGCCTGCCTAACCCGTCGACTCCTCTGGGTTCAGTTCCTAGTGTCTCGGCCAGGCTaGGGCTGGCTTTGTCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: RGSSRACLTRRLLWVQFLVSRPG*GWLCPK Trigger: CTTCGGACAAAGCCAGCCTCAGCCTGGCCGAGACAC...TAGGAACTGAACCCAGAGGAGTCGACGGGTTAGGCAGGCTCTACTACTGCCTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CTTGACGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTTGGCTGAGCACATCGTaGTCTGCAGGGAGGACAGAA | + |
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Preference number: 4 (lower is better) Translates to: LDGLTIVSAFVGRLQGQCWLSTS*SAGRTE Trigger: TTCTGTCCTCCCTGCAGAGCACGATGTGCTCAGCCA...ACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCGTCAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | GACAAGAGGCTGGGGCAGAGCAGAAGCCTTTGGAAGCAAGCACAGAGGGAAGGAGCCAGATGCGGTCATTaGGCAGCCAGTGTGAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: DKRLGQSRSLWKQAQREGARCGH*AASVSG Trigger: TCCACTCACACTGGCTGCTCAATGACCGCATCTGGC...TCCTTCCCTCTGTGCTTGCTTCCAAAGGCTTCTGCTCTGCCCCAGCCTCTTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | GAGCAGGAGTTACCAACACAGAACCTTCAGCCTCACCACCCACTATTTCTCTTACAGCCCGAGGTCCACTaGGCGGGCAGCATGTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: EQELPTQNLQPHHPLFLLQPEVH*AGSMSG Trigger: GCCCGACATGCTGCCCGCTCAGTGGACCTCGGGCTG...TAAGAGAAATAGTGGGTGGTGAGGCTGAAGGTTCTGTGTTGGTAACTCCTGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTTGGCACTCCACTTGCTaGCTAGGATACTGTCTAGAC | + |
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Preference number: 4 (lower is better) Translates to: RPHHSLCLCGEAPGPVSGWHSTC*LGYCLD Trigger: GTCTAGACAGTATCCTAGGCAGCAAGTGGAGTGCCA...ACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CTAGACAAGAGGCTGGGGCAGAGCAGAAGCCTTTGGAAGCAAGCACAGAGGGAAACTCCATGGTCAGGGTaGGCAGCAGGAGGAAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LDKRLGQSRSLWKQAQRETPWSG*AAGGSG Trigger: CCCACTTCCTCCTGCTGCCCACCCTGACCATGGAGT...TTCCCTCTGTGCTTGCTTCCAAAGGCTTCTGCTCTGCCCCAGCCTCTTGTCTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | AGCAGAAGCCTTTGGAAGCAAGCACAGAGGGAAGGACGTGAATGCTCGTATGTGATTGAGCAGCCAGTGTaGGTGGAGCTCCGGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SRSLWKQAQREGRECSYVIEQPV*VELRQP Trigger: AGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAAT...CACATACGAGCATTCACGTCCTTCCCTCTGTGCTTGCTTCCAAAGGCTTCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | CAGGACATTCACTTTATTGATCCCAGGTGGGACAGGAGAACTGGGAAGCTTGACCCGTGCAGATGGCGTTaGGGGAGTGCTGGATACGGG | + |
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Preference number: 4 (lower is better) Translates to: QDIHFIDPRWDRRTGKLDPCRWR*GSAGYG Trigger: CCCGTATCCAGCACTCCCTCAACGCCATCTGCACGG...GTCAAGCTTCCCAGTTCTCCTGTCCCACCTGGGATCAATAAAGTGAATGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CAGGACATTCACTTTATTGATCCCAGGTGGGACAGGAGAACTGGGAAGCTTGACTCGGGCTGGAGTACCTaGTGGCGGGCACTGAGCATG | + |
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Preference number: 4 (lower is better) Translates to: QDIHFIDPRWDRRTGKLDSGWST*WRALSM Trigger: CATGCTCAGTGCCCGCCAGCAGGTACTCCAGCCCGA...GTCAAGCTTCCCAGTTCTCCTGTCCCACCTGGGATCAATAAAGTGAATGTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | TTTTCTGACTCCCTGACACGTTCTAGACAAGAGGCTGGGGCAGAGCAGAAGCCTCGGGCTTCCACCAACTaGTCTGTGTTGGGGTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: FSDSLTRSRQEAGAEQKPRASTN*SVLGFS Trigger: TGAAAACCCCAACACAGAGCAGTTGGTGGAAGCCCG...AGGCTTCTGCTCTGCCCCAGCCTCTTGTCTAGAACGTGTCAGGGAGTCAGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | TCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCCGGCTCCTCCAGCGGTaGGCCAGCCAGATGCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: SPPTISLKESPVSRNFWSRLLQR*ASQMRS Trigger: TGACCGCATCTGGCTGGCCCACCGCTGGAGGAGCCG...GCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | CCTCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGACCTGCTGGCGGGCACTaGGCATGGCTAGGATGTGGC | + |
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Preference number: 4 (lower is better) Translates to: PHHPLFLLRNHLFPEISGPAGGH*AWLGCG Trigger: GCCACATCCTAGCCATGCTCAGTGCCCGCCAGCAGG...TCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CAGGACATTCACTTTATTGATCCCAGGTGGGACAGGAGAACTGGGAAGCTTGACTGGGGTTTTCAGCGCTaGCCTCTGAAGGAGTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: QDIHFIDPRWDRRTGKLDWGFQR*PLKECD Trigger: GTCACACTCCTTCAGAGGCCAGCGCTGAAAACCCCA...GTCAAGCTTCCCAGTTCTCCTGTCCCACCTGGGATCAATAAAGTGAATGTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CCTTTTCAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCAGCAAAGCTGGGCGGCTaGCCCCGTGCAGATGGCGTT | + |
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Preference number: 4 (lower is better) Translates to: PFQLSKMKPECTADCIWPAKLGG*PRADGV Trigger: AACGCCATCTGCACGGGGCCAGCCGCCCAGCTTTGC...TGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTGAAAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGGGCAGCATGTCGGGCTaGAGTACCTGCTGGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: QLSKMKPECTADCIWPSKGSMSG*STCWRA Trigger: TGCCCGCCAGCAGGTACTCCAGCCCGACATGCTGCC...CTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | GAGCAGGAGTTACCAACACAGAACCTTCAGCCTCACCACCCACTATTTCTCTTAGCCTGCTGGAGGGGATaGAGTTATTCAGGAGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: EQELPTQNLQPHHPLFLLACWRG*SYSGAC Trigger: ACACGCTCCTGAATAACTGCATCCCCTCCAGCAGGC...TAAGAGAAATAGTGGGTGGTGAGGCTGAAGGTTCTGTGTTGGTAACTCCTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | AGCAGAAGCCTTTGGAAGCAAGCACAGAGGGAAGGACGTGAATGCTCGTATGTGCAACACCTTGCCTCTTaGGTTATAGGTCCGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SRSLWKQAQREGRECSYVQHLAS*VIGPVD Trigger: ATCCACCGGACCTATAACCCAAGAGGCAAGGTGTTG...CACATACGAGCATTCACGTCCTTCCCTCTGTGCTTGCTTCCAAAGGCTTCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | ACAAGAGGCTGGGGCAGAGCAGAAGCCTTTGGAAGCAAGCACAGAGGGAAGGACGACTCTCTCCCATGCTaGGTTAAACTTTTTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: TRGWGRAEAFGSKHRGKDDSLPC*VKLFEH Trigger: GTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGTC...GTCCTTCCCTCTGTGCTTGCTTCCAAAGGCTTCTGCTCTGCCCCAGCCTCTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CCTCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGGCTGGAGTACCTGCTaGCGGGCACTGAGCATGGCT | + |
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Preference number: 4 (lower is better) Translates to: PHHPLFLLRNHLFPEISGGWSTC*RALSMA Trigger: AGCCATGCTCAGTGCCCGCCAGCAGGTACTCCAGCC...TCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | ACACAGAACCTTCAGCCTCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTTTCAGCGCTGGCCTCTaGAGGAGTGTGACTGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TQNLQPHHPLFLLRNHLFFSAGL*RSVTVL Trigger: CAGGACAGTCACACTCCTTCAGAGGCCAGCGCTGAA...AAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGAGGCTGAAGGTTCTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTGGAGCTCCGGCAGCCTaGTGGAGGGGATGCAGTTAT | + |
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Preference number: 4 (lower is better) Translates to: HHPLFLLRNHLFPEISGAGAPAA*WRGCSY Trigger: ATAACTGCATCCCCTCCAGCAGGCTGCCGGAGCTCC...AGCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGGCAAGACCTCAGCGGTaGGGAACTCCATGGTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QLSKMKPECTADCIWPSKARPQR*GTPWSG Trigger: CCCTGACCATGGAGTTCCCCACCGCTGAGGTCTTGC...CTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGGACAGAAGCAGCCTCTaGACAGGCTGCTCCAACGGC | + |
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Preference number: 4 (lower is better) Translates to: QLSKMKPECTADCIWPSKDRSSL*TGCSNG Trigger: GCCGTTGGAGCAGCCTGTCCAGAGGCTGCTTCTGTC...CTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | TTTTCAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCGTTGCCAGCTGTGGCTaGGCACATCGTGCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FSVVKNEARMHSRLYLAIVASCG*AHRALQ Trigger: CTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAAC...GATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTGAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | ACACAGAACCTTCAGCCTCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTAACACCTGGAACATCTaGGCCAGGCCTCTGGCATCT | + |
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Preference number: 4 (lower is better) Translates to: TQNLQPHHPLFLLRNHLFNTWNI*ARPLAS Trigger: AGATGCCAGAGGCCTGGCCCAGATGTTCCAGGTGTT...AAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGAGGCTGAAGGTTCTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTACAAGCATGGCTAGGATGTaGCGGCAGGGCAGGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: HPLFLLRNHLFPEISGATSMARM*RQGRWK Trigger: CTTCCACCTGCCCTGCCGCCACATCCTAGCCATGCT...TGTAGCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR TCA 90 bp | CACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTCCACCAGGATGGTATTaGCTCTCTCCCATGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: HHPLFLLRNHLFPEISGAPPGWY*LSPMLG Trigger: ACCCAGCATGGGAGAGAGTCAATACCATCCTGGTGG...AGCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTACAGCTTCCTCAGGTTaGCAGCTGTGGCTGAGCACA | + |
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Preference number: 4 (lower is better) Translates to: HHPLFLLRNHLFPEISGATASSG*QLWLST Trigger: TGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGT...AGCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CCTCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGACCGGAGCCAATGAGGTaGATGGATTTCTGGACGACC | + |
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Preference number: 4 (lower is better) Translates to: PHHPLFLLRNHLFPEISGPEPMR*MDFWTT Trigger: GGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGG...TCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CCTCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGATCAGGTTGCCAGCTGTaGCTGAGCACATCGTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PHHPLFLLRNHLFPEISGSGCQL*LSTSCS Trigger: AGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGA...TCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | TTTTCAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCGCTCCGGCAGCCTGCTaGAGGGGATGCAGTTATTCA | + |
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Preference number: 4 (lower is better) Translates to: FSVVKNEARMHSRLYLAIAPAAC*RGCSYS Trigger: TGAATAACTGCATCCCCTCCAGCAGGCTGCCGGAGC...GATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTGAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | TCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCGGTGCTTATCCAGGCTaGCACTCCACTTGCTGCCTA | + |
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Preference number: 4 (lower is better) Translates to: SPPTISLKESPVSRNFWSGAYPG*HSTCCL Trigger: TAGGCAGCAAGTGGAGTGCCAGCCTGGATAAGCACC...GCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | TCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGCCTACAGGAGTCTTGCTAATCTaGTGCAGCATAGGTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SKMKPECTADCIWPSKPTGVLLI*CSIGGL Trigger: CAGCCCACCTATGCTGCACCAGATTAGCAAGACTCC...TGTAGGCTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | TCACCACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTACCCTGGAGGAACTTaGAGATGTGGAAGGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: SPPTISLKESPVSRNFWSYPGGT*RCGRQR Trigger: TCTCTGCCTTCCACATCTGCAAGTTCCTCCAGGGTA...GCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | CAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGTCCGAAGAGTTCTGCTaGATGTATCGGAACACAGAC | + |
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Preference number: 4 (lower is better) Translates to: QLSKMKPECTADCIWPSKSEEFC*MYRNTD Trigger: GTCTGTGTTCCGATACATGCAGCAGAACTCTTCGGA...CTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR GCA 90 bp | TTTTCAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAGGTGTACAACACCTTaGCTCTTGGGTTATAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: FSVVKNEARMHSRLYLAIRCTTP*LLGYRS Trigger: GGACCTATAACCCAAGAGGCAAGGTGTTGTACACCT...GATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTGAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CCA 90 bp | CACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTACAAACTTTTTGAACACCTaGAACATCTGGGCCAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: HPLFLLRNHLFPEISGATNFLNT*NIWARP Trigger: AGGCCTGGCCCAGATGTTCCAGGTGTTCAAAAAGTT...TGTAGCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR CAA 72 bp | GTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTaGGCCATCAAAGCCTACATATTTACTACTGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VKNEARMHSRLY*AIKAYIFTTEP Trigger: GGGCTCAGTAGTAAATATGTAGGCTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| 3UTR CAA 72 bp | ATGTGTGTGAACTCAGAGCACAAATACAATCAGAAGTaGAGCCTACTGACTCAGGCTATAATCCCACTTACT | + |
|
Preference number: 4 (lower is better) Translates to: MCVNSEHKYNQK*SLLTQAIIPLT Trigger: AGTAAGTGGGATTATAGCCTGAGTCAGTAGGCTCAACTTCTGATTGTATTTGTGCTCTGAGTTCACACACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS-3UTR GCA 90 bp | TCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCAAAGCCTACAATTGACTCTCTCCCATaGTGGGTTAAACTTTTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SKMKPECTADCIWPSKPTIDSLP*WVKLFE Trigger: TTCAAAAAGTTTAACCCAGCATGGGAGAGAGTCAAT...TGTAGGCTTTGATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 90 bp | TCTGGGCGCGGCTCCTCCAGCGGTGGGCCAGCCAGATGCGGTCATTaGGCAGCCAGTGTGAGTGGAGCTCCGGCAGCCTGCTGGAGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: SGRGSSSGGPARCGH*AASVSGAPAACWRG Trigger: TCCCCTCCAGCAGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAATGACCGCATCTGGCTGGCCCACCGCTGGAGGAGCCGCGCCCAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 90 bp | ACTGAGCGGGCAGCATGTCGGGCTGGAGTACCTGCTGGCGGGCACTaGGCATGGCTAGGATGTGGCGGCAGGGCAGGTGGAAGGCTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: TERAACRAGVPAGGH*AWLGCGGRAGGRLG Trigger: ACCAAGCCTTCCACCTGCCCTGCCGCCACATCCTAGCCATGCTCAGTGCCCGCCAGCAGGTACTCCAGCCCGACATGCTGCCCGCTCAGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 90 bp | GCTCGCCTAGGCAAAGCTGGGCGGCTGGCCCCGTGCAGATGGCGTTaGGGGAGTGCTGGATACGGGCTTCCACCAACTGCTCTGTGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: ARLGKAGRLAPCRWR*GSAGYGLPPTALCW Trigger: CCAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGCCCAGCTTTGCCTAGGCGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 90 bp | CTGCCTAGGATACTGTCTAGACTGGAGGCACAGCCCGAGGTCCACTaGGCGGGCAGCATGTCGGGCTGGAGTACCTGCTGGCGGGCACTG | + |
|
Preference number: 5 (lower is better) Translates to: LPRILSRLEAQPEVH*AGSMSGWSTCWRAL Trigger: CAGTGCCCGCCAGCAGGTACTCCAGCCCGACATGCTGCCCGCTCAGTGGACCTCGGGCTGTGCCTCCAGTCTAGACAGTATCCTAGGCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 90 bp | CCTCCAGCGGTGGGCCAGCCAGATGCGGTCATTGAGCAGCCAGTGTaGGTGGAGCTCCGGCAGCCTGCTGGAGGGGATGCAGTTATTCAG | + |
|
Preference number: 5 (lower is better) Translates to: PPAVGQPDAVIEQPV*VELRQPAGGDAVIQ Trigger: CTGAATAACTGCATCCCCTCCAGCAGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAATGACCGCATCTGGCTGGCCCACCGCTGGAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CCA 90 bp | AGGTGCATGGATTTCTGGACGACCGCAAGCTCGCCTAGGCAAAGCTaGGCGGCTGGCCCCGTGCAGATGGCGTTGAGGGAGTGCTGGATA | + |
|
Preference number: 5 (lower is better) Translates to: RCMDFWTTASSPRQS*AAGPVQMALRECWI Trigger: TATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGCCCAGCTTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CCA 90 bp | ATGCTCATCTTCTCGGAGCCGGAGCCAATGAGGTGCATGGATTTCTaGACGACCGCAAGCTCGCCTAGGCAAAGCTGGGCGGCTGGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: MLIFSEPEPMRCMDF*TTASSPRQSWAAGP Trigger: GGGGCCAGCCGCCCAGCTTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCGAGAAGATGAGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 90 bp | CCTGCTCATAAGGGCCGATCCAGTTGTCGGCCAGTTCCCGGAGGGTaGTGTAGCGACGCTCGAACTCCTCCTCGCTGCAGTGCTGTAAGA | + |
|
Preference number: 5 (lower is better) Translates to: PAHKGRSSCRPVPGG*CSDARTPPRCSAVR Trigger: TCTTACAGCACTGCAGCGAGGAGGAGTTCGAGCGTCGCTACAGCACCCTCCGGGAACTGGCCGACAACTGGATCGGCCCTTATGAGCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CCA 90 bp | TATCCAGGCTGGCACTCCACTTGCTGCCTAGGATACTGTCTAGACTaGAGGCACAGCCCGAGGTCCACTGAGCGGGCAGCATGTCGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: YPGWHSTCCLGYCLD*RHSPRSTERAACRA Trigger: AGCCCGACATGCTGCCCGCTCAGTGGACCTCGGGCTGTGCCTCCAGTCTAGACAGTATCCTAGGCAGCAAGTGGAGTGCCAGCCTGGATA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CAA 90 bp | CGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTAGCCAGATGCGGTCATaGAGCAGCCAGTGTGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RPHHSLCLCGEAPGPVSGSQMRS*SSQCEW Trigger: CCACTCACACTGGCTGCTCAATGACCGCATCTGGCT...ACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS-3UTR CAA 90 bp | CGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTGGGCAGGTGGAAGGCTaGGTTAAAGTAGCAGCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: RPHHSLCLCGEAPGPVSGGQVEG*VKVAAA Trigger: TGCAGCTGCTACTTTAACCAAGCCTTCCACCTGCCC...ACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 90 bp | TGGCCTCTGAAGGAGTGTGACTGTCCTGGGGTGTCTCGGCCAGGCTaGGGCTGGCTTTGTCCGAAGAGTTCTGCTGCATGTATCGGAACA | + |
|
Preference number: 5 (lower is better) Translates to: WPLKECDCPGVSRPG*GWLCPKSSAACIGT Trigger: TGTTCCGATACATGCAGCAGAACTCTTCGGACAAAGCCAGCCTCAGCCTGGCCGAGACACCCCAGGACAGTCACACTCCTTCAGAGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CCA 90 bp | GTAGGGATGGCAAAGTACACAGCTCGGGCAAGAGGACCCTCAACCTaGACCCGGGGTCCATCTACCAGGAAGGTGTACAACACCTTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: VGMAKYTARARGPST*TRGPSTRKVYNTLP Trigger: AGGCAAGGTGTTGTACACCTTCCTGGTAGATGGACCCCGGGTCCAGGTTGAGGGTCCTCTTGCCCGAGCTGTGTACTTTGCCATCCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
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| CDS-3UTR CAA 90 bp | CACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTGAATCATACAGCTTCCTCAGGTaGCCAGCTGTGGCTGAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: HHSLCLCGEAPGPVSGESYSFLR*PAVAEH Trigger: GTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTA...TGATTCACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 90 bp | TGGAGGGGATGCAGTTATTCAGGAGCGTGTACAGCTTCCTCAGGTTaGCAGCTGTGGCTGAGCACATCGTGCTCTGCAGGGAGGACAGAA | + |
|
Preference number: 5 (lower is better) Translates to: WRGCSYSGACTASSG*QLWLSTSCSAGRTE Trigger: TTCTGTCCTCCCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCTGAATAACTGCATCCCCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 90 bp | TCCAGAATCTGGATGCTCATCTTCTCGGAGCCGGAGCCAATGAGGTaGATGGATTTCTGGACGACCGCAAGCTCGCCTAGGCAAAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SRIWMLIFSEPEPMR*MDFWTTASSPRQSW Trigger: CCAGCTTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCGAGAAGATGAGCATCCAGATTCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CAA 90 bp | CTTGACGGCCTCACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCCTCTGGCATCTTCATaGGTAGGGATGGCAAAGTAC | + |
|
Preference number: 5 (lower is better) Translates to: LDGLTIVSAFVGRLQGQCPLASS*VGMAKY Trigger: GTACTTTGCCATCCCTACCAATGAAGATGCCAGAGG...ACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTGAGGCCGTCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 90 bp | TGTCCTCCAGAATCTGGATGCTCATCTTCTCGGAGCCGGAGCCAATaGGGTGCATGGATTTCTGGACGACCGCAAGCTCGCCTAGGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: CPPESGCSSSRSRSQ*GAWISGRPQARLGK Trigger: TTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCGAGAAGATGAGCATCCAGATTCTGGAGGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 90 bp | CAGGCTGCTCCAACGGCAGCTGATAGAATTTACCCTGGAGGAACTTaGAGATGTGGAAGGCAGAGAGCAAGACCTCAGCGGTGGGGAACT | + |
|
Preference number: 5 (lower is better) Translates to: QAAPTAADRIYPGGT*RCGRQRARPQRWGT Trigger: AGTTCCCCACCGCTGAGGTCTTGCTCTCTGCCTTCCACATCTGCAAGTTCCTCCAGGGTAAATTCTATCAGCTGCCGTTGGAGCAGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 90 bp | TGTAAGAGCCGACCCACCTCTTCAGTGAGCAGAGTCACAGCCAGGTaGTTATCCAGGCTGGCACTCCACTTGCTGCCTAGGATACTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: CKSRPTSSVSRVTAR*LSRLALHLLPRILS Trigger: AGACAGTATCCTAGGCAGCAAGTGGAGTGCCAGCCTGGATAAGCACCTGGCTGTGACTCTGCTCACTGAAGAGGTGGGTCGGCTCTTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 90 bp | CAGGAGGAAGTGGGGGTCCACCAGGATGGTATTGACTCTCTCCCATaGTGGGTTAAACTTTTTGAACACCTGGAACATCTGGGCCAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: QEEVGVHQDGIDSLP*WVKLFEHLEHLGQA Trigger: GGCCTGGCCCAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGTCAATACCATCCTGGTGGACCCCCACTTCCTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
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| CDS GCA 90 bp | TGGGGTGTCTCGGCCAGGCTGAGGCTGGCTTTGTCCGAAGAGTTCTaGTGCATGTATCGGAACACAGACGCCATACCCTGTTTCTCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: WGVSARLRLALSEEF*CMYRNTDAIPCFSN Trigger: ATTTGAGAAACAGGGTATGGCGTCTGTGTTCCGATACATGCAGCAGAACTCTTCGGACAAAGCCAGCCTCAGCCTGGCCGAGACACCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CAA 90 bp | CACCATAGTCTCTGCCTTTGTGGGGAGGCTCCAGGGCCAGTGTCAGGTGAATCAGCTGGGTTAAACTTTTaGAACACCTGGAACATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: HHSLCLCGEAPGPVSGESAGLNF*NTWNIW Trigger: CCAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGC...TGATTCACCTGACACTGGCCCTGGAGCCTCCCCACAAAGGCAGAGACTATGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CCA 90 bp | ACTCTCTCCCATGCTGGGTTAAACTTTTTGAACACCTGGAACATCTaGGCCAGGCCTCTGGCATCTTCATTGGTAGGGATGGCAAAGTAC | + |
|
Preference number: 5 (lower is better) Translates to: TLSHAGLNFLNTWNI*ARPLASSLVGMAKY Trigger: GTACTTTGCCATCCCTACCAATGAAGATGCCAGAGGCCTGGCCCAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
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| CDS-3UTR CAA 90 bp | TTTTCAGTTGTCAAAAATGAAGCCAGAATGCACAGCAGACTGTATTTGGCCATCCCCGTGCAGATGGCGTaGAGGGAGTGCTGGATACGG | + |
|
Preference number: 5 (lower is better) Translates to: FSVVKNEARMHSRLYLAIPVQMA*RECWIR Trigger: CCGTATCCAGCACTCCCTCAACGCCATCTGCACGGG...GATGGCCAAATACAGTCTGCTGTGCATTCTGGCTTCATTTTTGACAACTGAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS-3UTR CAA 90 bp | CACCCACTATTTCTCTTAAGGAATCACCTGTTTCCAGAAATTTCTGGAGCTACAACAACACCTTGCCTCTaGGGTTATAGGTCCGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: HPLFLLRNHLFPEISGATTTPCL*GYRSGG Trigger: TCCACCGGACCTATAACCCAAGAGGCAAGGTGTTGT...TGTAGCTCCAGAAATTTCTGGAAACAGGTGATTCCTTAAGAGAAATAGTGGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 72 bp | GGCTCCTCCAGCGGTGGGCCAGCCAGATGCGGTCATTaGGCAGCCAGTGTGAGTGGAGCTCCGGCAGCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: GSSSGGPARCGH*AASVSGAPAAC Trigger: GCAGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAATGACCGCATCTGGCTGGCCCACCGCTGGAGGAGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CAA 72 bp | CGGCTCCTCCAGCGGTGGGCCAGCCAGATGCGGTCATaGAGCAGCCAGTGTGAGTGGAGCTCCGGCAGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RLLQRWASQMRS*SSQCEWSSGSL Trigger: CAGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAATGACCGCATCTGGCTGGCCCACCGCTGGAGGAGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 72 bp | GCAGCATGTCGGGCTGGAGTACCTGCTGGCGGGCACTaGGCATGGCTAGGATGTGGCGGCAGGGCAGGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: AACRAGVPAGGH*AWLGCGGRAGG Trigger: TCCACCTGCCCTGCCGCCACATCCTAGCCATGCTCAGTGCCCGCCAGCAGGTACTCCAGCCCGACATGCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 72 bp | GGCAAAGCTGGGCGGCTGGCCCCGTGCAGATGGCGTTaGGGGAGTGCTGGATACGGGCTTCCACCAACTGCT | + |
|
Preference number: 6 (lower is better) Translates to: GKAGRLAPCRWR*GSAGYGLPPTA Trigger: AGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGCCCAGCTTTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CCA 72 bp | GCGGCTGGCCCCGTGCAGATGGCGTTGAGGGAGTGCTaGATACGGGCTTCCACCAACTGCTCTGTGTTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: AAGPVQMALREC*IRASTNCSVLG Trigger: CCCCAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CAA 72 bp | AGGCAAAGCTGGGCGGCTGGCCCCGTGCAGATGGCGTaGAGGGAGTGCTGGATACGGGCTTCCACCAACTGC | + |
|
Preference number: 6 (lower is better) Translates to: RQSWAAGPVQMA*RECWIRASTNC Trigger: GCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGCCCAGCTTTGCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 72 bp | TGGGCGGCTGGCCCCGTGCAGATGGCGTTGAGGGAGTaGTGGATACGGGCTTCCACCAACTGCTCTGTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: WAAGPVQMALRE*WIRASTNCSVL Trigger: CAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 72 bp | AAGGGCCGATCCAGTTGTCGGCCAGTTCCCGGAGGGTaGTGTAGCGACGCTCGAACTCCTCCTCGCTGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: KGRSSCRPVPGG*CSDARTPPRCS Trigger: ACTGCAGCGAGGAGGAGTTCGAGCGTCGCTACAGCACCCTCCGGGAACTGGCCGACAACTGGATCGGCCCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CAA 90 bp | AGCTCGCCTAGGCAAAGCTGGGCGGCTGGCCCCGTGCAGATGGCGTaGAGGGAGTGCTGGATACGGGCTTCCACCAACTGCTCTGTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: SSPRQSWAAGPVQMA*RECWIRASTNCSVL Trigger: CAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCTGCACGGGGCCAGCCGCCCAGCTTTGCCTAGGCGAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 72 bp | ATACTGTCTAGACTGGAGGCACAGCCCGAGGTCCACTaGGCGGGCAGCATGTCGGGCTGGAGTACCTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: ILSRLEAQPEVH*AGSMSGWSTCW Trigger: CCAGCAGGTACTCCAGCCCGACATGCTGCCCGCTCAGTGGACCTCGGGCTGTGCCTCCAGTCTAGACAGTAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CCA 72 bp | TGCAGATGTGGAAGGCAGAGAGCAAGACCTCAGCGGTaGGGAACTCCATGGTCAGGGTGGGCAGCAGGAGGA | + |
|
Preference number: 6 (lower is better) Translates to: CRCGRQRARPQR*GTPWSGWAAGG Trigger: TCCTCCTGCTGCCCACCCTGACCATGGAGTTCCCCACCGCTGAGGTCTTGCTCTCTGCCTTCCACATCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
||
| CDS CCA 72 bp | TTCTCGGAGCCGGAGCCAATGAGGTGCATGGATTTCTaGACGACCGCAAGCTCGCCTAGGCAAAGCTGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: FSEPEPMRCMDF*TTASSPRQSWA Trigger: CGCCCAGCTTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCGAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CCA 72 bp | TGGCACTCCACTTGCTGCCTAGGATACTGTCTAGACTaGAGGCACAGCCCGAGGTCCACTGAGCGGGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: WHSTCCLGYCLD*RHSPRSTERAA Trigger: TGCTGCCCGCTCAGTGGACCTCGGGCTGTGCCTCCAGTCTAGACAGTATCCTAGGCAGCAAGTGGAGTGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 72 bp | CGCTGCAGTGCTGTAAGAGCCGACCCACCTCTTCAGTaGGCAGAGTCACAGCCAGGTGCTTATCCAGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RCSAVRADPPLQ*AESQPGAYPGW Trigger: CCAGCCTGGATAAGCACCTGGCTGTGACTCTGCTCACTGAAGAGGTGGGTCGGCTCTTACAGCACTGCAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS CAA 90 bp | CTGGAGGGGATGCAGTTATTCAGGAGCGTGTACAGCTTCCTCAGGTaGCCAGCTGTGGCTGAGCACATCGTGCTCTGCAGGGAGGACAGA | + |
|
Preference number: 6 (lower is better) Translates to: LEGMQLFRSVYSFLR*PAVAEHIVLCREDR Trigger: TCTGTCCTCCCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCTGAATAACTGCATCCCCTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS TCA 72 bp | AAGGAGTGTGACTGTCCTGGGGTGTCTCGGCCAGGCTaGGGCTGGCTTTGTCCGAAGAGTTCTGCTGCATGT | + |
|
Preference number: 6 (lower is better) Translates to: KECDCPGVSRPG*GWLCPKSSAAC Trigger: ACATGCAGCAGAACTCTTCGGACAAAGCCAGCCTCAGCCTGGCCGAGACACCCCAGGACAGTCACACTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS GCA 72 bp | GCGTTGAGGGAGTGCTGGATACGGGCTTCCACCAACTaGTCTGTGTTGGGGTTTTCAGCGCTGGCCTCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: ALRECWIRASTN*SVLGFSALASE Trigger: TTCAGAGGCCAGCGCTGAAAACCCCAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
||
| CDS GCA 72 bp | TGGATGCTCATCTTCTCGGAGCCGGAGCCAATGAGGTaGATGGATTTCTGGACGACCGCAAGCTCGCCTAGG | + |
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Preference number: 6 (lower is better) Translates to: WMLIFSEPEPMR*MDFWTTASSPR Trigger: CCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCGAGAAGATGAGCATCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CCA 72 bp | GCAAAGTACACAGCTCGGGCAAGAGGACCCTCAACCTaGACCCGGGGTCCATCTACCAGGAAGGTGTACAAC | + |
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Preference number: 6 (lower is better) Translates to: AKYTARARGPST*TRGPSTRKVYN Trigger: GTTGTACACCTTCCTGGTAGATGGACCCCGGGTCCAGGTTGAGGGTCCTCTTGCCCGAGCTGTGTACTTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
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| CDS CCA 72 bp | TCAGGAGCGTGTACAGCTTCCTCAGGTTGCCAGCTGTaGCTGAGCACATCGTGCTCTGCAGGGAGGACAGAA | + |
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Preference number: 6 (lower is better) Translates to: SGACTASSGCQL*LSTSCSAGRTE Trigger: TTCTGTCCTCCCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS TCA 72 bp | GAATCTGGATGCTCATCTTCTCGGAGCCGGAGCCAATaGGGTGCATGGATTTCTGGACGACCGCAAGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: ESGCSSSRSRSQ*GAWISGRPQAR Trigger: GCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGGCTCCGGCTCCGAGAAGATGAGCATCCAGATTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 72 bp | TGCAGTTATTCAGGAGCGTGTACAGCTTCCTCAGGTTaGCAGCTGTGGCTGAGCACATCGTGCTCTGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: CSYSGACTASSG*QLWLSTSCSAG Trigger: CCCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCTGAATAACTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CAA 72 bp | ATGCAGTTATTCAGGAGCGTGTACAGCTTCCTCAGGTaGCCAGCTGTGGCTGAGCACATCGTGCTCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: MQLFRSVYSFLR*PAVAEHIVLCR Trigger: CCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCTGAATAACTGCAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS GCA 72 bp | CCAACGGCAGCTGATAGAATTTACCCTGGAGGAACTTaGAGATGTGGAAGGCAGAGAGCAAGACCTCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: PTAADRIYPGGT*RCGRQRARPQR Trigger: CCGCTGAGGTCTTGCTCTCTGCCTTCCACATCTGCAAGTTCCTCCAGGGTAAATTCTATCAGCTGCCGTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017908.3 |
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| CDS CAA 90 bp | TCCACCAGGATGGTATTGACTCTCTCCCATGCTGGGTTAAACTTTTaGAACACCTGGAACATCTGGGCCAGGCCTCTGGCATCTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: STRMVLTLSHAGLNF*NTWNIWARPLASSL Trigger: CAATGAAGATGCCAGAGGCCTGGCCCAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGTCAATACCATCCTGGTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
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| CDS GCA 72 bp | GTGGGGGTCCACCAGGATGGTATTGACTCTCTCCCATaGTGGGTTAAACTTTTTGAACACCTGGAACATCTG | + |
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Preference number: 6 (lower is better) Translates to: VGVHQDGIDSLP*WVKLFEHLEHL Trigger: CAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGTCAATACCATCCTGGTGGACCCCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000017908.3 ENSMUST00000132282.2 |
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