Pregenerated sensors for ZSCAN4E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095936

Ensembl transcript IDs: ENSMUST00000166753.4, ENSMUST00000210521.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCGGGAAGTCTACATGATGACTGGAGGTGTCTTGACTTGCTCTTCTaGCACCACGAGGGAATTGACAAACAACATTCCCCTCTTCATGCT	+
Preference number: 5 (lower is better) Translates to: SGSLHDDWRCLDLLF*HHEGIDKQHSPLHA Trigger: AGCATGAAGAGGGGAATGTTGTTTGTCAATTCCCTCGTGGTGCCAGAAGAGCAAGTCAAGACACCTCCAGTCATCATGTAGACTTCCCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS CCA 90 bp	CCTCAGAGATGTTTTCTCTGGATAAATCCATTGGTTGTTCCTCCATaGGGACATCTGCAGGAGTCAGAGCACTCGGGAAGTCTACATGAT	+
Preference number: 5 (lower is better) Translates to: PQRCFLWINPLVVPP*GHLQESEHSGSLHD Trigger: ATCATGTAGACTTCCCGAGTGCTCTGACTCCTGCAGATGTCCCCATGGAGGAACAACCAATGGATTTATCCAGAGAAAACATCTCTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS GCA 90 bp	TGCCCTGTGGCCAATAATCTATCTTGTGTGGTGTCTACTGGCATCTaGTCATTATCTGGTATTGGCCTTGTTGCAGATTGCTGTTGTTTC	+
Preference number: 5 (lower is better) Translates to: CPVANNLSCVVSTGI*SLSGIGLVADCCCF Trigger: GAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGAGCAGATGCCAGTAGACACCACACAAGATAGATTATTGGCCACAGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS CCA 90 bp	TGGAAGTGTTATAGCAATTGTTCTTGTCCTCAGAGATGTTTTCTCTaGATAAATCCATTGGTTGTTCCTCCATGGGGACATCTGCAGGAG	+
Preference number: 5 (lower is better) Translates to: WKCYSNCSCPQRCFL*INPLVVPPWGHLQE Trigger: CTCCTGCAGATGTCCCCATGGAGGAACAACCAATGGATTTATCCAGAGAAAACATCTCTGAGGACAAGAACAATTGCTATAACACTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS CCA 90 bp	TCTATCTTGTGTGGTGTCTACTGGCATCTGCTCATTATCTGGTATTaGCCTTGTTGCAGATTGCTGTTGTTTCAAAAGCTTGATGACTTC	+
Preference number: 5 (lower is better) Translates to: SILCGVYWHLLIIWY*PCCRLLLFQKLDDF Trigger: GAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGAGCAGATGCCAGTAGACACCACACAAGATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS GCA 90 bp	TCTACTGGCATCTGCTCATTATCTGGTATTGGCCTTGTTGCAGATTaGTGTTGTTTCAAAAGCTTGATGACTTCTTTTAATGGCATGTTT	+
Preference number: 5 (lower is better) Translates to: STGICSLSGIGLVAD*CCFKSLMTSFNGMF Trigger: AAACATGCCATTAAAAGAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGAGCAGATGCCAGTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS CAA 90 bp	CTCATATCGCTACCACTGGCTTTCCACTTCTCTGTCAAAGCATACTaGTCCTTGCAGTGCCCAGTGAGGAGAAACTGCTCCAAGACCAGT	+
Preference number: 6 (lower is better) Translates to: LISLPLAFHFSVKAY*SLQCPVRRNCSKTS Trigger: ACTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAGTGGTAGCGATATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS GCA 72 bp	GCCAATAATCTATCTTGTGTGGTGTCTACTGGCATCTaGTCATTATCTGGTATTGGCCTTGTTGCAGATTGC	+
Preference number: 6 (lower is better) Translates to: ANNLSCVVSTGI*SLSGIGLVADC Trigger: GCAATCTGCAACAAGGCCAATACCAGATAATGAGCAGATGCCAGTAGACACCACACAAGATAGATTATTGGC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS CAA 90 bp	AAGGGAGTCTGTCTTGTTCCTGGGAATATTATCACCATTATATACTaGAGTAGCTGCATTCCTGGAAGTGTTATAGCAATTGTTCTTGTC	+
Preference number: 6 (lower is better) Translates to: KGVCLVPGNIITIIY*SSCIPGSVIAIVLV Trigger: GACAAGAACAATTGCTATAACACTTCCAGGAATGCAGCTACTCAAGTATATAATGGTGATAATATTCCCAGGAACAAGACAGACTCCCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS GCA 72 bp	ATCTGCTCATTATCTGGTATTGGCCTTGTTGCAGATTaGTGTTGTTTCAAAAGCTTGATGACTTCTTTTAAT	+
Preference number: 6 (lower is better) Translates to: ICSLSGIGLVAD*CCFKSLMTSFN Trigger: ATTAAAAGAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGAGCAGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2
CDS CAA 72 bp	TGTCTTGTTCCTGGGAATATTATCACCATTATATACTaGAGTAGCTGCATTCCTGGAAGTGTTATAGCAATT	+
Preference number: 6 (lower is better) Translates to: CLVPGNIITIIY*SSCIPGSVIAI Trigger: AATTGCTATAACACTTCCAGGAATGCAGCTACTCAAGTATATAATGGTGATAATATTCCCAGGAACAAGACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166753.4 ENSMUST00000210521.2

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