Pregenerated sensors for ZSCAN4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090714Ensembl transcript IDs: ENSMUST00000067210.12
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CATGAGATGTCTGAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAGATCAGAAAATGTTaGGAAACTCTAGTGCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: HEMSEEAMHLTCNPKTWDEIRKC*ETLVPE Trigger: TTCTGGCACTAGAGTTTCCAAACATTTTCTGATCTC...ATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTCAGACATCTCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| 3UTR TCA 72 bp | TTTGAACGTCATTCTAGTAATGTAGAGAAATATTCTTaGACTGTAAGCAGTAGACATGACATGAGATGTCTG | + |
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Preference number: 3 (lower is better) Translates to: FERHSSNVEKYS*TVSSRHDMRCL Trigger: CAGACATCTCATGTCATGTCTACTGCTTACAGTTCAAGAATATTTCTCTACATTACTAGAATGACGTTCAAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTCCTTGCAGTGCCCAATaGGGAGAAACTGCTCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: QHSSLFEDDILRLKPYQSPCSAQ*GETAPR Trigger: TCTTGGAGCAGTTTCTCCTCATTGGGCACTGCAAGG...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTCTCTTCTTATTCAGGTaGGTTCTCTGGTGGGACGAA | + |
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Preference number: 4 (lower is better) Translates to: QHSSLFEDDILRLKPYQSLFLFR*VLWWDE Trigger: TTCGTCCCACCAGAGAACTCACCTGAATAAGAAGAG...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTCACATGTGCTGCACTTaGAAGGCTTTTCTGGCATGT | + |
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Preference number: 4 (lower is better) Translates to: QHSSLFEDDILRLKPYQSHMCCT*KAFLAC Trigger: ACATGCCAGAAAAGCCTTTCAAGTGCAGCACATGTG...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR GCA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTTACTTGTCCTTGCAGTaGCCAATGAGGAGAAACTGC | + |
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Preference number: 4 (lower is better) Translates to: QHSSLFEDDILRLKPYQSYLSLQ*PMRRNC Trigger: GCAGTTTCTCCTCATTGGGCACTGCAAGGACAAGTA...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR GCA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACACATGATGACTGGAGTTaGCTTGACTTGCTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: EEAMHLTCNPKTWDETPTHDDWS*LDLLFW Trigger: CCAGAAGAGCAAGTCAAGGCAACTCCAGTCATCATG...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACAAAAACATTCCCCAAGTaGCTCTTGCAAGCATGTAGA | + |
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Preference number: 4 (lower is better) Translates to: EEAMHLTCNPKTWDETPTKTFPK*LLQACR Trigger: TCTACATGCTTGCAAGAGTCACTTGGGGAATGTTTT...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR GCA 90 bp | CATGAGATGTCTGAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATACATTCCCCTCTTCATaGTCAGGGTACTGTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: HEMSEEAMHLTCNPKTWDTFPSS*SGYCSF Trigger: GAAAGAACAGTACCCTGAGCATGAAGAGGGGAATGT...ATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTCAGACATCTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR GCA 90 bp | CATGAGATGTCTGAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATTCCCCAAGTGACTCTTaGAAGCATGTAGATGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HEMSEEAMHLTCNPKTWDSPSDS*KHVDVP Trigger: AGGAACATCTACATGCTTGCAAGAGTCACTTGGGGA...ATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTCAGACATCTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR CCA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTGGGTACTGTTCTTTCTaGATAATAAGAAGGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: QHSSLFEDDILRLKPYQSGYCSF*IIRRES Trigger: GGACTCCCTTCTTATTATCCAGAAAGAACAGTACCC...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR CCA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACACTTGACTTGCTCTTCTaGCATCAAGAGGGAATTGAA | + |
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Preference number: 4 (lower is better) Translates to: EEAMHLTCNPKTWDETPTLDLLF*HQEGIE Trigger: TTCAATTCCCTCTTGATGCCAGAAGAGCAAGTCAAG...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACATCACTTCTATATACTTaGGTAGCTGCATTCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: EEAMHLTCNPKTWDETPTSLLYT*VAAFLE Trigger: TTCCAGGAATGCAGCTACTCAAGTATATAGAAGTGA...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACAACATTTTCTGACAGGTaGCACAAAGCAATTCACTCT | + |
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Preference number: 4 (lower is better) Translates to: EEAMHLTCNPKTWDETPTTFSDR*HKAIHS Trigger: AGAGTGAATTGCTTTGTGTCACCTGTCAGAAAATGT...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR GCA 90 bp | CATGAGATGTCTGAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATAGAGCTTCTTGTCCTTaGATTGAAACATGGACCATG | + |
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Preference number: 4 (lower is better) Translates to: HEMSEEAMHLTCNPKTWDRASCP*IETWTM Trigger: CATGGTCCATGTTTCAATGCAAGGACAAGAAGCTCT...ATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTCAGACATCTCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR TCA 90 bp | CATGAGATGTCTGAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATTCCTCAGGCTCAGAATaGTATATTCTCTTGTTAATG | + |
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Preference number: 4 (lower is better) Translates to: HEMSEEAMHLTCNPKTWDSSGSE*YILLLM Trigger: CATTAACAAGAGAATATATCATTCTGAGCCTGAGGA...ATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTCAGACATCTCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 90 bp | TTGTCCTTGCAGTGCCCAATGAGGAGAAACTGCTCCAAGACCAGTTaGGAAATCATCTGCTCCTTAGTCTGCTTTTCTGGCTGCAACCAG | + |
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Preference number: 5 (lower is better) Translates to: LSLQCPMRRNCSKTS*EIICSLVCFSGCNQ Trigger: CTGGTTGCAGCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCATTGGGCACTGCAAGGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR CAA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACAAGAGATAGGCTCCTCTaGCCTAGACTCCAACCCTGG | + |
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Preference number: 5 (lower is better) Translates to: EEAMHLTCNPKTWDETPTRDRLL*PRLQPW Trigger: CCAGGGTTGGAGTCTAGGCAAGAGGAGCCTATCTCT...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 90 bp | CTTTCCACTTCTCTGTCAAAGCATACTTGTCCTTGCAGTGCCCAATaGGGAGAAACTGCTCCAAGACCAGTTGAGAAATCATCTGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LSTSLSKHTCPCSAQ*GETAPRPVEKSSAP Trigger: AGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCATTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS GCA 90 bp | TGTCCTGTGGCCAATAATCTATCTTGTGTGGTGTCTACTGGCATCTaGTCATTATCTGGTGTTGGCCTTGTTGCAGATTGCTGTTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: CPVANNLSCVVSTGI*SLSGVGLVADCCCF Trigger: GAAACAACAGCAATCTGCAACAAGGCCAACACCAGATAATGAGCAGATGCCAGTAGACACCACACAAGATAGATTATTGGCCACAGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CCA 90 bp | TGGAAGTGTTATAGCAATTGTTCTTGTCCTCAGAGATGTTTTCTCTaGATAAATCCTTTGGTTGTTCCTCCATGGGGACATCCGCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: WKCYSNCSCPQRCFL*INPLVVPPWGHPQE Trigger: CTCCTGCGGATGTCCCCATGGAGGAACAACCAAAGGATTTATCCAGAGAAAACATCTCTGAGGACAAGAACAATTGCTATAACACTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR CAA 90 bp | GAAGAGGCAATGCATTTAACTTGCAACCCTAAGACTTGGGATGAAACCCCAACAGGCATCAAGAGGGAATaGAAAAACAACATTCCCCTC | + |
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Preference number: 5 (lower is better) Translates to: EEAMHLTCNPKTWDETPTGIKRE*KNNIPL Trigger: GAGGGGAATGTTGTTTTTCAATTCCCTCTTGATGCC...TGTTGGGGTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR CAA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTATCACTTCTATATACTaGAGTAGCTGCATTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: QHSSLFEDDILRLKPYQSITSIY*SSCIPG Trigger: TCCAGGAATGCAGCTACTCAAGTATATAGAAGTGAT...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS-3UTR CAA 90 bp | CAACATTCTTCTCTCTTTGAAGATGACATACTGAGGCTGAAGCCCTACCAGTCTGAACATTCTTCACACTaGAATAGTTTGGCATCTCTA | + |
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Preference number: 5 (lower is better) Translates to: QHSSLFEDDILRLKPYQSEHSSH*NSLASL Trigger: TAGAGATGCCAAACTATTCAAGTGTGAAGAATGTTC...AGACTGGTAGGGCTTCAGCCTCAGTATGTCATCTTCAAAGAGAGAAGAATGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS GCA 90 bp | TCTACTGGCATCTGCTCATTATCTGGTGTTGGCCTTGTTGCAGATTaGTGTTGTTTCAAAAGCTTGATGACTTCTTTTAATGGCATGTTT | + |
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Preference number: 5 (lower is better) Translates to: STGICSLSGVGLVAD*CCFKSLMTSFNGMF Trigger: AAACATGCCATTAAAAGAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAACACCAGATAATGAGCAGATGCCAGTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CCA 72 bp | CAGGAGTCGGAGCACTCCGGAAGTCTACATGATGACTaGAGTTGCCTTGACTTGCTCTTCTGGCATCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: QESEHSGSLHDD*SCLDLLFWHQE Trigger: CTCTTGATGCCAGAAGAGCAAGTCAAGGCAACTCCAGTCATCATGTAGACTTCCGGAGTGCTCCGACTCCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 72 bp | CTGGCTTTCCACTTCTCTGTCAAAGCATACTTGTCCTaGCAGTGCCCAATGAGGAGAAACTGCTCCAAGACC | + |
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Preference number: 6 (lower is better) Translates to: LAFHFSVKAYLS*QCPMRRNCSKT Trigger: GGTCTTGGAGCAGTTTCTCCTCATTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 72 bp | CTACCACTGGCTTTCCACTTCTCTGTCAAAGCATACTaGTCCTTGCAGTGCCCAATGAGGAGAAACTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LPLAFHFSVKAY*SLQCPMRRNCS Trigger: GGAGCAGTTTCTCCTCATTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAGTGGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 90 bp | CTGCTTTTCTGGCTGCAACCAGGAGTTGAACATCTTCCAGAGACTTaGCAGCTCCTGAGTTGCCCAGCAGCCATTGTTACTTGGAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: LLFWLQPGVEHLPET*QLLSCPAAIVTWRK Trigger: TTTTCTCCAAGTAACAATGGCTGCTGGGCAACTCAGGAGCTGCAAAGTCTCTGGAAGATGTTCAACTCCTGGTTGCAGCCAGAAAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 90 bp | CTCATATCGCTACCACTGGCTTTCCACTTCTCTGTCAAAGCATACTaGTCCTTGCAGTGCCCAATGAGGAGAAACTGCTCCAAGACCAGT | + |
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Preference number: 6 (lower is better) Translates to: LISLPLAFHFSVKAY*SLQCPMRRNCSKTS Trigger: ACTGGTCTTGGAGCAGTTTCTCCTCATTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAGTGGTAGCGATATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 72 bp | CAGTGCCCAATGAGGAGAAACTGCTCCAAGACCAGTTaGGAAATCATCTGCTCCTTAGTCTGCTTTTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: QCPMRRNCSKTS*EIICSLVCFSG Trigger: GCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCATTGGGCACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 72 bp | CAGGTGACACAAAGCAATTCACTCTTCTTATTCAGGTaGGTTCTCTGGTGGGACGAAAGGCTCCTGGCATGT | + |
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Preference number: 6 (lower is better) Translates to: QVTQSNSLFLFR*VLWWDERLLAC Trigger: ACATGCCAGGAGCCTTTCGTCCCACCAGAGAACTCACCTGAATAAGAAGAGTGAATTGCTTTGTGTCACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CCA 72 bp | GGACTTTTCACATGTGCTGCACTTGAAAGGCTTTTCTaGCATGTGTATGATCTCATGGGTTCGGCGGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: GLFTCAALERLF*HVYDLMGSAVR Trigger: TCTGACCGCCGAACCCATGAGATCATACACATGCCAGAAAAGCCTTTCAAGTGCAGCACATGTGAAAAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 72 bp | TCTTGTCCTCAGAGATGTTTTCTCTGGATAAATCCTTaGGTTGTTCCTCCATGGGGACATCCGCAGGAGTCG | + |
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Preference number: 6 (lower is better) Translates to: SCPQRCFLWINP*VVPPWGHPQES Trigger: CGACTCCTGCGGATGTCCCCATGGAGGAACAACCAAAGGATTTATCCAGAGAAAACATCTCTGAGGACAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 72 bp | GCCCAGCAGCCATTGTTACTTGGAGAAAAGTTTAGCTaGGCACTTGGTGAGTTAGAGATGTCTTCTACCCAC | + |
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Preference number: 6 (lower is better) Translates to: AQQPLLLGEKFS*ALGELEMSSTH Trigger: GTGGGTAGAAGACATCTCTAACTCACCAAGTGCTCAGCTAAACTTTTCTCCAAGTAACAATGGCTGCTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 72 bp | TCTCTGTCAAAGCATACTTGTCCTTGCAGTGCCCAATaGGGAGAAACTGCTCCAAGACCAGTTGAGAAATCA | + |
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Preference number: 6 (lower is better) Translates to: SLSKHTCPCSAQ*GETAPRPVEKS Trigger: TGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCATTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS GCA 72 bp | CCGGAAGTCTACATGATGACTGGAGTTGCCTTGACTTaGTCTTCTGGCATCAAGAGGGAATTGAAAAACAAC | + |
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Preference number: 6 (lower is better) Translates to: PEVYMMTGVALT*SSGIKRELKNN Trigger: GTTGTTTTTCAATTCCCTCTTGATGCCAGAAGAGCAAGTCAAGGCAACTCCAGTCATCATGTAGACTTCCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CCA 72 bp | CACTTGAAAGGCTTTTCTGGCATGTGTATGATCTCATaGGTTCGGCGGTCAGAGACTCGTTTGAACATTTTC | + |
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Preference number: 6 (lower is better) Translates to: HLKGFSGMCMIS*VRRSETRLNIF Trigger: GAAAATGTTCAAACGAGTCTCTGACCGCCGAACCCATGAGATCATACACATGCCAGAAAAGCCTTTCAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 72 bp | CATGTTTTCAGAAAAGAGAGCTTCTTGTCCTTGCATTaGAACATGGACCATGACAGGAGGCTTCAAGCACTC | + |
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Preference number: 6 (lower is better) Translates to: HVFRKESFLSLH*NMDHDRRLQAL Trigger: GAGTGCTTGAAGCCTCCTGTCATGGTCCATGTTTCAATGCAAGGACAAGAAGCTCTCTTTTCTGAAAACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS TCA 72 bp | TGGGTTCGGCGGTCAGAGACTCGTTTGAACATTTTCTaGCAGGTGACACAAAGCAATTCACTCTTCTTATTC | + |
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Preference number: 6 (lower is better) Translates to: WVRRSETRLNIF*QVTQSNSLFLF Trigger: GAATAAGAAGAGTGAATTGCTTTGTGTCACCTGTCAGAAAATGTTCAAACGAGTCTCTGACCGCCGAACCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CCA 72 bp | CTACATGATGACTGGAGTTGCCTTGACTTGCTCTTCTaGCATCAAGAGGGAATTGAAAAACAACATTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: LHDDWSCLDLLF*HQEGIEKQHSP Trigger: AGGGGAATGTTGTTTTTCAATTCCCTCTTGATGCCAGAAGAGCAAGTCAAGGCAACTCCAGTCATCATGTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 72 bp | TCCGGAAGTCTACATGATGACTGGAGTTGCCTTGACTaGCTCTTCTGGCATCAAGAGGGAATTGAAAAACAA | + |
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Preference number: 6 (lower is better) Translates to: SGSLHDDWSCLD*LFWHQEGIEKQ Trigger: TTGTTTTTCAATTCCCTCTTGATGCCAGAAGAGCAAGTCAAGGCAACTCCAGTCATCATGTAGACTTCCGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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| CDS CAA 90 bp | AAGGGAGTCTGTCTTTTTCCTGGGAATATTATCACTTCTATATACTaGAGTAGCTGCATTCCTGGAAGTGTTATAGCAATTGTTCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: KGVCLFPGNIITSIY*SSCIPGSVIAIVLV Trigger: GACAAGAACAATTGCTATAACACTTCCAGGAATGCAGCTACTCAAGTATATAGAAGTGATAATATTCCCAGGAAAAAGACAGACTCCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067210.12 |
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