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Pregenerated sensors for ZSCAN4C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054272

Ensembl transcript IDs: ENSMUST00000131379.4

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp TGGCATGAGATGTCTGAAGAGGCAATGCATTTAACTTaGAACCCTAAGACTTGGGATGAAAACCCCAACATG +
Preference number: 3 (lower is better)
Translates to: WHEMSEEAMHLT*NPKTWDENPNM
Trigger: CATGTTGGGGTTTTCATCCCAAGTCTTAGGGTTGCAAGTTAAATGCATTGCCTCTTCAGACATCTCATGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
3UTR TCA 72 bp TTTGAACGTCGTTCTAGTAATGTAGAGAAATATTCTTaGACTGTAAGCAGTAGACATGGCATGAGATGTCTG +
Preference number: 3 (lower is better)
Translates to: FERRSSNVEKYS*TVSSRHGMRCL
Trigger: CAGACATCTCATGCCATGTCTACTGCTTACAGTTCAAGAATATTTCTCTACATTACTAGAACGACGTTCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 90 bp TTGTCCTTGCAGTGCCCAGTGAGGAGAAACTGCTCCAAGACCAGTTaGGAAATCATCTGCTCCTTAGTCTGCTTTTCTGGCTGCAACCAG +
Preference number: 5 (lower is better)
Translates to: LSLQCPVRRNCSKTS*EIICSLVCFSGCNQ
Trigger: CTGGTTGCAGCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 90 bp CTTTCCACTTCTCTGTCAAAGCATACTTGTCCTTGCAGTGCCCAGTaGGGAGAAACTGCTCCAAGACCAGTTGAGAAATCATCTGCTCCT +
Preference number: 5 (lower is better)
Translates to: LSTSLSKHTCPCSAQ*GETAPRPVEKSSAP
Trigger: AGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 90 bp ACAAAGCAATTCACTCTTCTTATTCAGGTGAGTTCTCTGGTGGGATaGAAGGCTCCTGGCATGTTTGAACATCCTAGAACATTCTTCACA +
Preference number: 5 (lower is better)
Translates to: TKQFTLLIQVSSLVG*KAPGMFEHPRTFFT
Trigger: TGTGAAGAATGTTCTAGGATGTTCAAACATGCCAGGAGCCTTTCATCCCACCAGAGAACTCACCTGAATAAGAAGAGTGAATTGCTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 90 bp CTCAGGCTCAGGATGATATATTCTCTTGTTAATGAAAAGGGAGTCTaGCTTGTTCCTGGGAATATTATCACCACTATATACTTGAGTAGC +
Preference number: 5 (lower is better)
Translates to: LRLRMIYSLVNEKGV*LVPGNIITTIYLSS
Trigger: GCTACTCAAGTATATAGTGGTGATAATATTCCCAGGAACAAGTCAGACTCCCTTTTCATTAACAAGAGAATATATCATCCTGAGCCTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CAA 72 bp TGGCTGCAACCAGGAGTTGAACATCTTCCAGAGACTTaGCAGCTCCTGAGTTGCCCAGCAGCCATTGTTACT +
Preference number: 6 (lower is better)
Translates to: WLQPGVEHLPET*QLLSCPAAIVT
Trigger: AGTAACAATGGCTGCTGGGCAACTCAGGAGCTGCAAAGTCTCTGGAAGATGTTCAACTCCTGGTTGCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CAA 72 bp CTGGCTTTCCACTTCTCTGTCAAAGCATACTTGTCCTaGCAGTGCCCAGTGAGGAGAAACTGCTCCAAGACC +
Preference number: 6 (lower is better)
Translates to: LAFHFSVKAYLS*QCPVRRNCSKT
Trigger: GGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CAA 72 bp CTACCACTGGCTTTCCACTTCTCTGTCAAAGCATACTaGTCCTTGCAGTGCCCAGTGAGGAGAAACTGCTCC +
Preference number: 6 (lower is better)
Translates to: LPLAFHFSVKAY*SLQCPVRRNCS
Trigger: GGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAGTGGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 72 bp CAGTGCCCAGTGAGGAGAAACTGCTCCAAGACCAGTTaGGAAATCATCTGCTCCTTAGTCTGCTTTTCTGGC +
Preference number: 6 (lower is better)
Translates to: QCPVRRNCSKTS*EIICSLVCFSG
Trigger: GCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CCA 72 bp GGACTTTTCACATGTGCTGCACTTGAAAGGCTTTTCTaGCATGTGTATGATCTCATGGGTGCGGCGGTCAGA +
Preference number: 6 (lower is better)
Translates to: GLFTCAALERLF*HVYDLMGAAVR
Trigger: TCTGACCGCCGCACCCATGAGATCATACACATGCCAGAAAAGCCTTTCAAGTGCAGCACATGTGAAAAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CCA 72 bp ATCAGAGATAGGCTGCTCTTGCCTAGACTGCAACCCTaGTACCTCCCTTGGGTCGTTTTCAGAAAAACATTC +
Preference number: 6 (lower is better)
Translates to: IRDRLLLPRLQP*YLPWVVFRKTF
Trigger: GAATGTTTTTCTGAAAACGACCCAAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCCTATCTCTGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 72 bp TCTCTGTCAAAGCATACTTGTCCTTGCAGTGCCCAGTaGGGAGAAACTGCTCCAAGACCAGTTGAGAAATCA +
Preference number: 6 (lower is better)
Translates to: SLSKHTCPCSAQ*GETAPRPVEKS
Trigger: TGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 72 bp CAGGTGACACAAAGCAATTCACTCTTCTTATTCAGGTaGGTTCTCTGGTGGGATGAAAGGCTCCTGGCATGT +
Preference number: 6 (lower is better)
Translates to: QVTQSNSLFLFR*VLWWDERLLAC
Trigger: ACATGCCAGGAGCCTTTCATCCCACCAGAGAACTCACCTGAATAAGAAGAGTGAATTGCTTTGTGTCACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CCA 72 bp CACTTGAAAGGCTTTTCTGGCATGTGTATGATCTCATaGGTGCGGCGGTCAGAGACTCGTTTGAACATTTTC +
Preference number: 6 (lower is better)
Translates to: HLKGFSGMCMIS*VRRSETRLNIF
Trigger: GAAAATGTTCAAACGAGTCTCTGACCGCCGCACCCATGAGATCATACACATGCCAGAAAAGCCTTTCAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS TCA 72 bp TGGGTGCGGCGGTCAGAGACTCGTTTGAACATTTTCTaGCAGGTGACACAAAGCAATTCACTCTTCTTATTC +
Preference number: 6 (lower is better)
Translates to: WVRRSETRLNIF*QVTQSNSLFLF
Trigger: GAATAAGAAGAGTGAATTGCTTTGTGTCACCTGTCAGAAAATGTTCAAACGAGTCTCTGACCGCCGCACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CCA 72 bp CAGTTGAGAAATCATCTGCTCCTTAGTCTGCTTTTCTaGCTGCAACCAGGAGTTGAACATCTTCCAGAGACT +
Preference number: 6 (lower is better)
Translates to: QLRNHLLLSLLF*LQPGVEHLPET
Trigger: AGTCTCTGGAAGATGTTCAACTCCTGGTTGCAGCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CAA 72 bp GTGTGGTGTCTACTGGCATCTGCTCATTATCTGGTGTaGGCCTTGTTGCAGATTGCTGTTGTTTCAAAAGCT +
Preference number: 6 (lower is better)
Translates to: VWCLLASAHYLV*ALLQIAVVSKA
Trigger: AGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAACACCAGATAATGAGCAGATGCCAGTAGACACCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4
CDS CCA 72 bp ATCTTGTGTGGTGTCTACTGGCATCTGCTCATTATCTaGTGTTGGCCTTGTTGCAGATTGCTGTTGTTTCAA +
Preference number: 6 (lower is better)
Translates to: ILCGVYWHLLII*CWPCCRLLLFQ
Trigger: TTGAAACAACAGCAATCTGCAACAAGGCCAACACCAGATAATGAGCAGATGCCAGTAGACACCACACAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131379.4