Pregenerated sensors for ZSCAN4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095339Ensembl transcript IDs: ENSMUST00000168158.3, ENSMUST00000210847.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTCTTACCAAGGACAGGATCAGAGATAGGCTGCTCTTGCCTAGACTaGAACCCTGGTACCTCCCTTGGGTCTTTTTCAGAAAAACATTCC | + |
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Preference number: 5 (lower is better) Translates to: FLPRTGSEIGCSCLD*NPGTSLGSFSEKHS Trigger: GGAATGTTTTTCTGAAAAAGACCCAAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCCTATCTCTGATCCTGTCCTTGGTAAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 90 bp | CTTTCCACTTCTCTGTCAAAGCATACTTGTCCTTGCAGTGCCCAGTaGGGAGAAACTGCTCCAAGACCAATTGAGAAATCATCTGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LSTSLSKHTCPCSAQ*GETAPRPIEKSSAP Trigger: AGGAGCAGATGATTTCTCAATTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 90 bp | CTCCAAGACCAATTGAGAAATCATCTGCTCCTTAGTCTGCTTTTCTaGCTGCAACCAGGAGTTGAACATCTTCCAGAGACTTTGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LQDQLRNHLLLSLLF*LQPGVEHLPETLQL Trigger: GAGCTGCAAAGTCTCTGGAAGATGTTCAACTCCTGGTTGCAGCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAATTGGTCTTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 90 bp | GCAAAGCAATTCACTCTTCTTATTCAGGTGAGTTCTCTGGTGGGATaGAAGGCTCCTGGCATGTTTGAACATCCTAGAACATTCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: AKQFTLLIQVSSLVG*KAPGMFEHPRTFFT Trigger: TGTGAAGAATGTTCTAGGATGTTCAAACATGCCAGGAGCCTTTCATCCCACCAGAGAACTCACCTGAATAAGAAGAGTGAATTGCTTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS GCA 90 bp | TCAGTAGCATTGCAAGAGGTGTTGCATTCATTTTCACTGTTTTCTTaGCCTGTGGCCAATAATCTATCTTGTGTGGTGTCTACTGGCATC | + |
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Preference number: 5 (lower is better) Translates to: SVALQEVLHSFSLFS*PVANNLSCVVSTGI Trigger: GATGCCAGTAGACACCACACAAGATAGATTATTGGCCACAGGGCAAGAAAACAGTGAAAATGAATGCAACACCTCTTGCAATGCTACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS GCA 90 bp | TCTACTGGCATCTGTGCATTATCTGGTATTGGCCTTGTTGCAGATTaGTGTTGTTTCAAAAGCTTGATGACTTCTTTTAATGGCATGTTT | + |
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Preference number: 5 (lower is better) Translates to: STGICALSGIGLVAD*CCFKSLMTSFNGMF Trigger: AAACATGCCATTAAAAGAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGCACAGATGCCAGTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS GCA 90 bp | TGTCTTGTTCCTGGGAATATTATCACCACTATATACTTGAGTAGCTaGATTCCTGGAAGTGTTATAGCAATTGTTCTTGTCCTCAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: CLVPGNIITTIYLSS*IPGSVIAIVLVLRD Trigger: ATCTCTGAGGACAAGAACAATTGCTATAACACTTCCAGGAATGCAGCTACTCAAGTATATAGTGGTGATAATATTCCCAGGAACAAGACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS GCA 72 bp | TTCTTACCAAGGACAGGATCAGAGATAGGCTGCTCTTaGCTAGACTGCAACCCTGGTACCTCCCTTGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: FLPRTGSEIGCS*LDCNPGTSLGS Trigger: AGACCCAAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCCTATCTCTGATCCTGTCCTTGGTAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 72 bp | ATTCTTACCAAGGACAGGATCAGAGATAGGCTGCTCTaGCCTAGACTGCAACCCTGGTACCTCCCTTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: ILTKDRIRDRLL*PRLQPWYLPWV Trigger: GACCCAAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCCTATCTCTGATCCTGTCCTTGGTAAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 90 bp | TGCCTCATGATTCTTACCAAGGACAGGATCAGAGATAGGCTGCTCTaGCCTAGACTGCAACCCTGGTACCTCCCTTGGGTCTTTTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: CLMILTKDRIRDRLL*PRLQPWYLPWVFFR Trigger: TCTGAAAAAGACCCAAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCCTATCTCTGATCCTGTCCTTGGTAAGAATCATGAGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | CAGATCTGTGGTAATTCCTCAGGTGACGATGGTAAGTaGATGATTGGCGAAAGCGACGGCTACATAGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: QICGNSSGDDGK*MIGESDGYIGN Trigger: GTTCCCTATGTAGCCGTCGCTTTCGCCAATCATCCACTTACCATCGTCACCTGAGGAATTACCACAGATCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 90 bp | CTCATATCGCTACCACTGGCTTTCCACTTCTCTGTCAAAGCATACTaGTCCTTGCAGTGCCCAGTGAGGAGAAACTGCTCCAAGACCAAT | + |
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Preference number: 6 (lower is better) Translates to: LISLPLAFHFSVKAY*SLQCPVRRNCSKTN Trigger: ATTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGAAGTGGAAAGCCAGTGGTAGCGATATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | AGAGGGCTTCTTGTCCTTGCATTGAAACATGGACCATaGCAGGAGGCTTCAAGCACTCATCAGTCAGACTCT | + |
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Preference number: 6 (lower is better) Translates to: RGLLVLALKHGP*QEASSTHQSDS Trigger: AGAGTCTGACTGATGAGTGCTTGAAGCCTCCTGTCATGGTCCATGTTTCAATGCAAGGACAAGAAGCCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | CTACATGATGACTGGAGGTGTCTTGACTTGCTCTTCTaGCACCACGAGGGAATTGACAAACAACATTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: LHDDWRCLDLLF*HHEGIDKQHSP Trigger: AGGGGAATGTTGTTTGTCAATTCCCTCGTGGTGCCAGAAGAGCAAGTCAAGACACCTCCAGTCATCATGTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | TGTTTTCTCTGGATAAATCCATTGGTTGTTCCTCCATaGGGACATCTGCAGGAGTCAGAGCACTCGGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: CFLWINPLVVPP*GHLQESEHSGS Trigger: ACTTCCCGAGTGCTCTGACTCCTGCAGATGTCCCCATGGAGGAACAACCAATGGATTTATCCAGAGAAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 90 bp | AGCAATTGTTCTTGTCCTCAGAGATGTTTTCTCTGGATAAATCCATaGGTTGTTCCTCCATGGGGACATCTGCAGGAGTCAGAGCACTCG | + |
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Preference number: 6 (lower is better) Translates to: SNCSCPQRCFLWINP*VVPPWGHLQESEHS Trigger: CGAGTGCTCTGACTCCTGCAGATGTCCCCATGGAGGAACAACCAATGGATTTATCCAGAGAAAACATCTCTGAGGACAAGAACAATTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | CAGGTGATGCAAAGCAATTCACTCTTCTTATTCAGGTaGGTTCTCTGGTGGGATGAAAGGCTCCTGGCATGT | + |
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Preference number: 6 (lower is better) Translates to: QVMQSNSLFLFR*VLWWDERLLAC Trigger: ACATGCCAGGAGCCTTTCATCCCACCAGAGAACTCACCTGAATAAGAAGAGTGAATTGCTTTGCATCACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | ATCAGAGATAGGCTGCTCTTGCCTAGACTGCAACCCTaGTACCTCCCTTGGGTCTTTTTCAGAAAAACATTC | + |
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Preference number: 6 (lower is better) Translates to: IRDRLLLPRLQP*YLPWVFFRKTF Trigger: GAATGTTTTTCTGAAAAAGACCCAAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCCTATCTCTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 90 bp | ATGACTGGAGGTGTCTTGACTTGCTCTTCTGGCACCACGAGGGAATaGACAAACAACATTCCCCTCTTCATGCTCATGGTTTTGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: MTGGVLTCSSGTTRE*TNNIPLFMLMVLFF Trigger: AAAGAACAAAACCATGAGCATGAAGAGGGGAATGTTGTTTGTCAATTCCCTCGTGGTGCCAGAAGAGCAAGTCAAGACACCTCCAGTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | TCTCTGTCAAAGCATACTTGTCCTTGCAGTGCCCAGTaGGGAGAAACTGCTCCAAGACCAATTGAGAAATCA | + |
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Preference number: 6 (lower is better) Translates to: SLSKHTCPCSAQ*GETAPRPIEKS Trigger: TGATTTCTCAATTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACAAGTATGCTTTGACAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | CATGTTTTCAGAAAAGAGGGCTTCTTGTCCTTGCATTaGAACATGGACCATGACAGGAGGCTTCAAGCACTC | + |
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Preference number: 6 (lower is better) Translates to: HVFRKEGFLSLH*NMDHDRRLQAL Trigger: GAGTGCTTGAAGCCTCCTGTCATGGTCCATGTTTCAATGCAAGGACAAGAAGCCCTCTTTTCTGAAAACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 72 bp | TCTTGTCCTCAGAGATGTTTTCTCTGGATAAATCCATaGGTTGTTCCTCCATGGGGACATCTGCAGGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: SCPQRCFLWINP*VVPPWGHLQES Trigger: TGACTCCTGCAGATGTCCCCATGGAGGAACAACCAATGGATTTATCCAGAGAAAACATCTCTGAGGACAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | TTCACTCTTCTTATTCAGGTGAGTTCTCTGGTGGGATaGAAGGCTCCTGGCATGTTTGAACATCCTAGAACA | + |
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Preference number: 6 (lower is better) Translates to: FTLLIQVSSLVG*KAPGMFEHPRT Trigger: TGTTCTAGGATGTTCAAACATGCCAGGAGCCTTTCATCCCACCAGAGAACTCACCTGAATAAGAAGAGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | GGACTTTTCACATGTGCTGCACTTGAAAGGCTTTTCTaGCATGTGTATGATCTCATGGGTTCGAAGGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: GLFTCAALERLF*HVYDLMGSKVR Trigger: TCTGACCTTCGAACCCATGAGATCATACACATGTCAGAAAAGCCTTTCAAGTGCAGCACATGTGAAAAGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | CAATTGAGAAATCATCTGCTCCTTAGTCTGCTTTTCTaGCTGCAACCAGGAGTTGAACATCTTCCAGAGACT | + |
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Preference number: 6 (lower is better) Translates to: QLRNHLLLSLLF*LQPGVEHLPET Trigger: AGTCTCTGGAAGATGTTCAACTCCTGGTTGCAGCCAGAAAAGCAGACTAAGGAGCAGATGATTTCTCAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | TGTGGTGTCTACTGGCATCTGTGCATTATCTGGTATTaGCCTTGTTGCAGATTGCTGTTGTTTCAAAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: CGVYWHLCIIWY*PCCRLLLFQKL Trigger: AAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGCACAGATGCCAGTAGACACCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CCA 72 bp | AGGTGTTGCATTCATTTTCACTGTTTTCTTGCCCTGTaGCCAATAATCTATCTTGTGTGGTGTCTACTGGCA | + |
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Preference number: 6 (lower is better) Translates to: RCCIHFHCFLAL*PIIYLVWCLLA Trigger: TGCCAGTAGACACCACACAAGATAGATTATTGGCCACAGGGCAAGAAAACAGTGAAAATGAATGCAACACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 72 bp | TCACCAACATTTACTTCAGTAGCATTGCAAGAGGTGTaGCATTCATTTTCACTGTTTTCTTGCCCTGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SPTFTSVALQEV*HSFSLFSCPVA Trigger: GGCCACAGGGCAAGAAAACAGTGAAAATGAATGCAACACCTCTTGCAATGCTACTGAAGTAAATGTTGGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 90 bp | CTACAGCTTTCACCAACATTTACTTCAGTAGCATTGCAAGAGGTGTaGCATTCATTTTCACTGTTTTCTTGCCCTGTGGCCAATAATCTA | + |
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Preference number: 6 (lower is better) Translates to: LQLSPTFTSVALQEV*HSFSLFSCPVANNL Trigger: TAGATTATTGGCCACAGGGCAAGAAAACAGTGAAAATGAATGCAACACCTCTTGCAATGCTACTGAAGTAAATGTTGGTGAAAGCTGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 90 bp | AAGGGAGTCTGTCTTGTTCCTGGGAATATTATCACCACTATATACTaGAGTAGCTGCATTCCTGGAAGTGTTATAGCAATTGTTCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: KGVCLVPGNIITTIY*SSCIPGSVIAIVLV Trigger: GACAAGAACAATTGCTATAACACTTCCAGGAATGCAGCTACTCAAGTATATAGTGGTGATAATATTCCCAGGAACAAGACAGACTCCCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 72 bp | TTGACAAACAACATTCCCCTCTTCATGCTCATGGTTTaGTTCTTTCTGGGTAATAAGAAGGGAGTCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: LTNNIPLFMLMV*FFLGNKKGVLF Trigger: GAAAAGGACTCCCTTCTTATTACCCAGAAAGAACAAAACCATGAGCATGAAGAGGGGAATGTTGTTTGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS TCA 72 bp | TGGGTTCGAAGGTCAGAAACTCGTTTGAATATTTTCTaGCAGGTGATGCAAAGCAATTCACTCTTCTTATTC | + |
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Preference number: 6 (lower is better) Translates to: WVRRSETRLNIF*QVMQSNSLFLF Trigger: GAATAAGAAGAGTGAATTGCTTTGCATCACCTGTCAGAAAATATTCAAACGAGTTTCTGACCTTCGAACCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 72 bp | TATGGAATCTCTTTTGATGACTTTCACATGGTAAGTTaGCCTCATGATTCTTACCAAGGACAGGATCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: YGISFDDFHMVS*PHDSYQGQDQR Trigger: TCTCTGATCCTGTCCTTGGTAAGAATCATGAGGCAAACTTACCATGTGAAAGTCATCAAAAGAGATTCCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS CAA 72 bp | TGTCTTGTTCCTGGGAATATTATCACCACTATATACTaGAGTAGCTGCATTCCTGGAAGTGTTATAGCAATT | + |
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Preference number: 6 (lower is better) Translates to: CLVPGNIITTIY*SSCIPGSVIAI Trigger: AATTGCTATAACACTTCCAGGAATGCAGCTACTCAAGTATATAGTGGTGATAATATTCCCAGGAACAAGACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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| CDS GCA 72 bp | ATCTGTGCATTATCTGGTATTGGCCTTGTTGCAGATTaGTGTTGTTTCAAAAGCTTGATGACTTCTTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: ICALSGIGLVAD*CCFKSLMTSFN Trigger: ATTAAAAGAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAATACCAGATAATGCACAGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168158.3 ENSMUST00000210847.2 |
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