Pregenerated sensors for ZSCAN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038797Ensembl transcript IDs: ENSMUST00000044115.9, ENSMUST00000132163.8, ENSMUST00000147125.2, ENSMUST00000155128.3, ENSMUST00000205361.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGGGTTGTGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACCCCGGGGCATGTCCCTaGGCGCCTCCAGAGCCACAG | + |
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Preference number: 4 (lower is better) Translates to: RVVGRDTVGVLPAESAQHPGACP*APPEPQ Trigger: CTGTGGCTCTGGAGGCGCCCAGGGACATGCCCCGGG...GTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCACAACCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR TCA 90 bp | GGGTTGTGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTGCGCGGAGCTCTGGCTaGACTTCTGGCCGCACTCGG | + |
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Preference number: 4 (lower is better) Translates to: GLWGGTLWEFSLQSQLSTARSSG*TSGRTR Trigger: CCGAGTGCGGCCAGAAGTTCAGCCAGAGCTCCGCGC...AGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCACAACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGAGGGTTGTGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCCCTCCTCCTGGGGGCTaGCTTTTCCAGCACTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GGLWGGTLWEFSLQSQLSPPPGG*LFQHSG Trigger: CCCAGAGTGCTGGAAAAGGCAGCCCCCAGGAGGAGG...GCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCACAACCCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTCTGGGGTCCCTCGGCTaGGTCCTCCTCCTGGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GGTLWEFSLQSQLSTSFSLGSLG*VLLLGA Trigger: AGCCCCCAGGAGGAGGACGCAGCCGAGGGACCCCAG...AGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | AGGGTTGTGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTCAGGGCCATCCTCCTaGAGCACTGCTTCCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: RVVGRDTVGVLPAESAQHSGPSS*STASCT Trigger: GGTGCAGGAAGCAGTGCTGCAGGAGGATGGCCCTGA...GTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCACAACCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCGTGTGCGTCCGCTGGTaGACCACGAGCTGCGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFVCVRW*TTSCER Trigger: GCGCTCGCAGCTCGTGGTGCACCAGCGGACGCACAC...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | GGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTAGTGTGCACCTCTaGCCTCAGCCAGCGCCGACA | + |
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Preference number: 4 (lower is better) Translates to: GEGHCGSSPCRVSSALPSLSVHL*PQPAPT Trigger: TGTCGGCGCTGGCTGAGGCCAGAGGTGCACACTAAG...AGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTATCCTCCTGCAGCACTaGTTCCTGCACCCACGCGTC | + |
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Preference number: 4 (lower is better) Translates to: GGTLWEFSLQSQLSTSFSILLQH*FLHPRV Trigger: GACGCGTGGGTGCAGGAAGCAGTGCTGCAGGAGGAT...AGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGAGGGTTGTGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCTCTCACCCAGGTAGGTaGCCTGAAGGCCTATTAGCT | + |
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Preference number: 4 (lower is better) Translates to: GGLWGGTLWEFSLQSQLSSHPGR*PEGLLA Trigger: AGCTAATAGGCCTTCAGGGCACCTACCTGGGTGAGA...GCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCACAACCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCGCTGCGTCCTCCTCCTaGGGGCTGCCTTTTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFAASSS*GLPFPA Trigger: TGCTGGAAAAGGCAGCCCCCAGGAGGAGGACGCAGC...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR TCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTCCCCATCAGACTGCTaGCCACCTTCCCCTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFSPSDC*PPSPPE Trigger: CTCTGGAGGGGAAGGTGGTCAGCAGTCTGATGGGGA...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR TCA 90 bp | GGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTGGTTGGGGCTCCTGCTaGAACTCTTGCCACACTCGG | + |
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Preference number: 4 (lower is better) Translates to: GTLWEFSLQSQLSTSFSFGWGSC*NSCHTR Trigger: CCGAGTGTGGCAAGAGTTTCAGCAGGAGCCCCAACC...AAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTCCACTGCCTCCTCACTaGTCTCAGGCCGATGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GGTLWEFSLQSQLSTSFSPLPPH*SQADVL Trigger: AAGAACATCGGCCTGAGAGCAGTGAGGAGGCAGTGG...AGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | TGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTGCCACGGCTTGTCTCCCAAGTaGGCTCGCTGGTGCATCACC | + |
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Preference number: 4 (lower is better) Translates to: CGSSPCRVSSALPSLFCHGLSPK*ARWCIT Trigger: GGTGATGCACCAGCGAGCGCACTTGGGAGACAAGCC...GTGGCAGAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR TCA 90 bp | ACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTGCCAGTTGGAGCTGTTGCTaGAGCCTTTGCCGCACTCCG | + |
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Preference number: 4 (lower is better) Translates to: TVGVLPAESAQHFLLFSASWSCC*SLCRTP Trigger: CGGAGTGCGGCAAAGGCTTCAGCAACAGCTCCAACT...GGCAGAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCAAGTGCGCTCGCTGGTaGATCACCAGAATGGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFKCARW*ITRMEP Trigger: GGGCTCCATTCTGGTGATGCACCAGCGAGCGCACTT...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | GGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTCCTTTTCCAGCACTCTaGGGAAAGGGCTCAGACTCA | + |
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Preference number: 4 (lower is better) Translates to: GGTLWEFSLQSQLSTSFSPFPAL*GKGSDS Trigger: TGAGTCTGAGCCCTTTCCCCAGAGTGCTGGAAAAGG...AGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | GGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCCCAAGTGCGCTCGCTaGTGCATCACCAGAATGGAG | + |
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Preference number: 4 (lower is better) Translates to: GTLWEFSLQSQLSTSFSFPKCAR*CITRME Trigger: CTCCATTCTGGTGATGCACCAGCGAGCGCACTTGGG...AAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCCTGTGCCGAAAAGTCTaGGTCAGGTCTTCCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFLCRKV*VRSSTR Trigger: CCTGGTGGAAGACCTGACCCAGACTTTTCGGCACAG...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR TCA 90 bp | ACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTGCCTCTTGCAGCCAGGCCTaGATTTCTCTTGGCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: TVGVLPAESAQHFLLFSASCSQA*ISLGST Trigger: TGTGCTGCCAAGAGAAATTCAGGCCTGGCTGCAAGA...GGCAGAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCGTGTGGATCCTCTGGTaGGTGATAAGGTTCGCACTC | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFVWILW*VIRFAL Trigger: GAGTGCGAACCTTATCACGCACCAGAGGATCCACAC...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR GCA 90 bp | ACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTGCCCATAGTGGTGACCTCTaGCTGTTCATCTTCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: TVGVLPAESAQHFLLFSAHSGDL*LFIFFL Trigger: CAAGAAGAAGATGAACAGGCAGAGGTCACCACTATG...GGCAGAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR TCA 90 bp | GGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCAAACATGTCTTCATTTaGGTTCTCCCCATTCTCGCT | + |
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Preference number: 4 (lower is better) Translates to: GHCGSSPCRVSSALPSLFKHVFI*VLPILA Trigger: AGCGAGAATGGGGAGAACTCAAATGAAGACATGTTT...GAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | TGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTGCCACTCATGGGTGATAAGGTaGGATTTCCGGCTAAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: CGSSPCRVSSALPSLFCHSWVIR*DFRLKV Trigger: AACTTTTAGCCGGAAATCCCACCTTATCACCCATGA...GTGGCAGAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CCA 90 bp | CACAAAGAGTATTTAGGAAAAGTGGTTCTTTTAAAGGGACAACACGGGCGGGGGGTGTGGGTCCGCTCATaGGTGATAAGGTGGGATTTC | + |
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Preference number: 4 (lower is better) Translates to: HKEYLGKVVLLKGQHGRGVWVRS*VIRWDF Trigger: GAAATCCCACCTTATCACCCATGAGCGGACCCACAC...CCCCCGCCCGTGTTGTCCCTTTAAAAGAACCACTTTTCCTAAATACTCTTTGTG 49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS CCA 90 bp | GGCCTATTAGCTGGCCAACTTCCCTTCCTTCCGATGGCACGACCCTaGGGTCCTCACCCGGGGCATGTCCCTGGGCGCCTCCAGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: GLLAGQLPFLPMARP*GPHPGHVPGRLQSH Trigger: GTGGCTCTGGAGGCGCCCAGGGACATGCCCCGGGTGAGGACCCCAGGGTCGTGCCATCGGAAGGAAGGGAAGTTGGCCAGCTAATAGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044115.9 ENSMUST00000147125.2 |
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| CDS-3UTR CAA 90 bp | AGGGTTGTGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTGGTGTGTGATGAAGTaGGAGCTGTTGCTGAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: RVVGRDTVGVLPAESAQHWCVMK*ELLLKP Trigger: AGGCTTCAGCAACAGCTCCAACTTCATCACACACCA...GTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCACAACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CAA 90 bp | GGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTCAGGCCGATGTTCTaGCAGCCAGGCCTGAATTTC | + |
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Preference number: 5 (lower is better) Translates to: GTLWEFSLQSQLSTSFSFLRPMF*QPGLNF Trigger: GAAATTCAGGCCTGGCTGCAAGAACATCGGCCTGAG...AAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS GCA 90 bp | TTCCTGCACCCACGCGTCATCCTCCAGGATCATAGTGGTGACCTCTaGCTGTTCATCTTCTTCTTGAGGTACCTGAACCAAAGGGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: FLHPRVILQDHSGDL*LFIFFLRYLNQRAE Trigger: CTCAGCCCTTTGGTTCAGGTACCTCAAGAAGAAGATGAACAGGCAGAGGTCACCACTATGATCCTGGAGGATGACGCGTGGGTGCAGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044115.9 ENSMUST00000132163.8 ENSMUST00000147125.2 ENSMUST00000155128.3 ENSMUST00000205361.2 |
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| CDS-3UTR CAA 90 bp | TGGGGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCCAAACATGTCTTCATTaGAGTTCTCCCCATTCTCGC | + |
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Preference number: 5 (lower is better) Translates to: WGGTLWEFSLQSQLSTSFQTCLH*SSPHSR Trigger: GCGAGAATGGGGAGAACTCAAATGAAGACATGTTTG...GAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CAA 90 bp | GGAGGGACACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTCCAGTGTGAGTCGTTaGGTGTCTACTAAAGTTCGA | + |
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Preference number: 5 (lower is better) Translates to: GGTLWEFSLQSQLSTSFSSSVSR*VSTKVR Trigger: TCGAACTTTAGTAGACACCAAACGACTCACACTGGA...AGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTGTCCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS-3UTR CAA 90 bp | CACTGTGGGAGTTCTCCCTGCAGAGTCAGCTCAGCACTTCCTTCTCTTTTCTGCAGGCCTGAATTTCTCTaGGCAGCACAGTTAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: HCGSSPCRVSSALPSLFCRPEFL*AAQLAS Trigger: AGATGCTAACTGTGCTGCCAAGAGAAATTCAGGCCT...GCAGAAAAGAGAAGGAAGTGCTGAGCTGACTCTGCAGGGAGAACTCCCACAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044115.9 |
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| CDS CCA 72 bp | GCTGGCCAACTTCCCTTCCTTCCGATGGCACGACCCTaGGGTCCTCACCCGGGGCATGTCCCTGGGCGCCTC | + |
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Preference number: 6 (lower is better) Translates to: AGQLPFLPMARP*GPHPGHVPGRL Trigger: GAGGCGCCCAGGGACATGCCCCGGGTGAGGACCCCAGGGTCGTGCCATCGGAAGGAAGGGAAGTTGGCCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044115.9 ENSMUST00000147125.2 |
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| CDS CCA 72 bp | GGCACGACCCTGGGGTCCTCACCCGGGGCATGTCCCTaGGCGCCTCCAGAGCCACAGTCTCTCTCAAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: GTTLGSSPGACP*APPEPQSLSKS Trigger: TGACTTTGAGAGAGACTGTGGCTCTGGAGGCGCCCAGGGACATGCCCCGGGTGAGGACCCCAGGGTCGTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044115.9 ENSMUST00000147125.2 |
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| CDS GCA 72 bp | ACTGGGGACATTCATACGGCTTCTCACCCAGGTAGGTaGCCTGAAGGCCTATTAGCTGGCCAACTTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: TGDIHTASHPGR*PEGLLAGQLPF Trigger: GAAGGGAAGTTGGCCAGCTAATAGGCCTTCAGGGCACCTACCTGGGTGAGAAGCCGTATGAATGTCCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044115.9 ENSMUST00000147125.2 |
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| CDS CAA 90 bp | ATCCTCCAGGATCATAGTGGTGACCTCTGCCTGTTCATCTTCTTCTaGAGGTACCTGAACCAAAGGGCTGAGGGGAGTGCTCACTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: ILQDHSGDLCLFIFF*RYLNQRAEGSAHCW Trigger: CCAGCAGTGAGCACTCCCCTCAGCCCTTTGGTTCAGGTACCTCAAGAAGAAGATGAACAGGCAGAGGTCACCACTATGATCCTGGAGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000044115.9 ENSMUST00000132163.8 ENSMUST00000147125.2 ENSMUST00000155128.3 ENSMUST00000205361.2 |
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| CDS GCA 72 bp | CCACGCGTCATCCTCCAGGATCATAGTGGTGACCTCTaGCTGTTCATCTTCTTCTTGAGGTACCTGAACCAA | + |
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Preference number: 6 (lower is better) Translates to: PRVILQDHSGDL*LFIFFLRYLNQ Trigger: TTGGTTCAGGTACCTCAAGAAGAAGATGAACAGGCAGAGGTCACCACTATGATCCTGGAGGATGACGCGTGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044115.9 ENSMUST00000132163.8 ENSMUST00000147125.2 ENSMUST00000155128.3 ENSMUST00000205361.2 |
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| CDS CAA 90 bp | TCAAGAACATCCCATGTGACTCCACACCCTCAAACATGTCTTCATTaGAGTTCTCCCCATTCTCGCTCTGTATCTCAAAATCACTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: SRTSHVTPHPQTCLH*SSPHSRSVSQNHCA Trigger: GGCACAGTGATTTTGAGATACAGAGCGAGAATGGGGAGAACTCAAATGAAGACATGTTTGAGGGTGTGGAGTCACATGGGATGTTCTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000044115.9 ENSMUST00000147125.2 ENSMUST00000155128.3 |
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| CDS CAA 72 bp | TCCCATGTGACTCCACACCCTCAAACATGTCTTCATTaGAGTTCTCCCCATTCTCGCTCTGTATCTCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: SHVTPHPQTCLH*SSPHSRSVSQN Trigger: ATTTTGAGATACAGAGCGAGAATGGGGAGAACTCAAATGAAGACATGTTTGAGGGTGTGGAGTCACATGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000044115.9 ENSMUST00000147125.2 ENSMUST00000155128.3 |
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