RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZSCAN10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023902

Ensembl transcript IDs: ENSMUST00000095595.9, ENSMUST00000115509.8, ENSMUST00000117606.2, ENSMUST00000118369.2, ENSMUST00000120967.8, ENSMUST00000122285.8, ENSMUST00000123866.8, ENSMUST00000129227.8, ENSMUST00000138487.2, ENSMUST00000148062.8

Found 320 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTaGCCTACAGTTTGCGTAAGAGGCTCTCCTGCAACTTCAGGTTTC +
Preference number: 1 (lower is better)
Translates to: LPSAGVPPQPVLLVS*PTVCVRGSPATSGF
Trigger: GAAACCTGAAGTTGCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR GCA 90 bp GGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTaGGTAAGAGGCTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGAC +
Preference number: 1 (lower is better)
Translates to: GVPPQPVLLVSCPTV*VRGSPATSGFSVWD
Trigger: GTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR GCA 90 bp GCAAGTTGGGGTGAGATTGTAACTGGTGGGCCTTCACAACTTCACTaGCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCT +
Preference number: 1 (lower is better)
Translates to: ASWGEIVTGGPSQLH*RQQEYLPNQCCWSP
Trigger: AGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAAGTTGTGAAGGCCCACCAGTTACAATCTCACCCCAACTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122285.8
3UTR-3UTR CCA 90 bp TCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCAAGTCTCCCCCTGGGGCTCTaGGGCATCGGAAGCTCCTCT +
Preference number: 2 (lower is better)
Translates to: SSHTTDIGRIESLGEVASLPLGL*GIGSSS
Trigger: AGAGGAGCTTCCGATGCCCCAGAGCCCCAGGGGGAG...ACTTGCAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
3UTR-3UTR CCA 90 bp AGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGACTCCCCCTGGGGCTCTaGGGCATCGGAAGCTCCTCT +
Preference number: 2 (lower is better)
Translates to: RIELRPKVFPHHRHRKDRLPLGL*GIGSSS
Trigger: AGAGGAGCTTCCGATGCCCCAGAGCCCCAGGGGGAG...TCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
3UTR-3UTR GCA 90 bp GAGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGCTCCCCAACCAGTGCTaGTGGTCTCCTGCCCTACAG +
Preference number: 2 (lower is better)
Translates to: EDRAASKSLPTPQTSEGSLPNQC*WSPALQ
Trigger: CTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAG...CGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR CAA 90 bp AGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGA +
Preference number: 2 (lower is better)
Translates to: RSTSPTSAAGLLPYS*RKRLSCNFRFLCLG
Trigger: TCCCAGACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR CCA 90 bp GTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACG +
Preference number: 2 (lower is better)
Translates to: VSRSTSPTSAAGLLPYSLSGFSV*DSAPMT
Trigger: CGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGA...CAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR GCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGAGGGAATCTTATTCATaGAGGGAGGTGCACATGGGA +
Preference number: 2 (lower is better)
Translates to: LWGRSKVEELGGEICVKGRESYS*REVHMG
Trigger: TCCCATGTGCACCTCCCTGCATGAATAAGATTCCCT...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
3UTR-3UTR GCA 90 bp GTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCGTAAGAGGCTCTCCTaGAACTTCAGGTTTCTCTGT +
Preference number: 2 (lower is better)
Translates to: VSRSTSPTSAAGLLPYSLRKRLS*NFRFLC
Trigger: ACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACG...CAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR GCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGGGAATCTTATTCATaGAGGGAGGTGCACATGGGA +
Preference number: 2 (lower is better)
Translates to: SREEVNCGGGRRWRNWEERESYS*REVHMG
Trigger: TCCCATGTGCACCTCCCTGCATGAATAAGATTCCCT...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
3UTR-3UTR TCA 90 bp AGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGTGGTGGGCCTGTAGATaGGACATCTCTGGGAAGTTT +
Preference number: 2 (lower is better)
Translates to: SCVQKSSHTTDIGRIESLWWACR*DISGKF
Trigger: AAACTTCCCAGAGATGTCTCATCTACAGGCCCACCA...CAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
3UTR-3UTR CCA 90 bp TCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCAAGTTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACG +
Preference number: 2 (lower is better)
Translates to: SSHTTDIGRIESLGEVASSGFSV*DSAPMT
Trigger: CGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGA...ACTTGCAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR GCA 90 bp TCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCAAGTCGTAAGAGGCTCTCCTaGAACTTCAGGTTTCTCTGT +
Preference number: 2 (lower is better)
Translates to: SSHTTDIGRIESLGEVASRKRLS*NFRFLC
Trigger: ACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACG...ACTTGCAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR CCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACG +
Preference number: 2 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLSGFSV*DSAPMT
Trigger: CGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGA...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR GCA 72 bp GCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTaGCCTACAGTTTGCGTAAGAGGCTCTCCTGCAACT +
Preference number: 3 (lower is better)
Translates to: AGVPPQPVLLVS*PTVCVRGSPAT
Trigger: AGTTGCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR CAA 90 bp AGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGACTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGC +
Preference number: 3 (lower is better)
Translates to: RIELRPKVFPHHRHRKDRLLPYS*RKRLSC
Trigger: GCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAG...TCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR GCA 72 bp CCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTaGGTAAGAGGCTCTCCTGCAACTTCAGGTTTCTCT +
Preference number: 3 (lower is better)
Translates to: PQPVLLVSCPTV*VRGSPATSGFS
Trigger: AGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR CAA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGC +
Preference number: 3 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLLLPYS*RKRLSC
Trigger: GCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAG...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR-3UTR CAA 90 bp CAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTCTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGC +
Preference number: 3 (lower is better)
Translates to: QKSSHTTDIGRIESLGEVLLPYS*RKRLSC
Trigger: GCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAG...AACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
3UTR GCA 72 bp GGGGACACCATAGGGAATCTTATTCATGCAGGGAGGTaGACATGGGACAAGGTTGCTGGAACATGGGTGAAG +
Preference number: 3 (lower is better)
Translates to: GDTIGNLIHAGR*TWDKVAGTWVK
Trigger: CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCCCTATGGTGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
3UTR TCA 72 bp GGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTaGAGGGGACACCATAGGGAATCTTATTCATGCAGG +
Preference number: 3 (lower is better)
Translates to: GRRWRNWEERYV*RGHHRESYSCR
Trigger: CCTGCATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
3UTR CCA 72 bp AAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTaGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAG +
Preference number: 3 (lower is better)
Translates to: KQILGVKGRGKL*GRSKVEELGGE
Trigger: CTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCCCGTCCCGGAGCGGTTaGCCGTGCAGCCGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: FTAVSRSTSPTSAAGLLPPSRSG*PCSRLS
Trigger: GCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGG...GGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGCCGTCCCGGAGCGGTTaGCCGTGCAGCCGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEPSRSG*PCSRLS
Trigger: GCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGG...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGACCGTCCCGGAGCGGTTaGCCGTGCAGCCGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGPSRSG*PCSRLS
Trigger: GCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGG...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTCACAACTTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCCCGTCCCGGAGCGGTTaGCCGTGCAGCCGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: FTTSLPSAGVPPQPVLLVPSRSG*PCSRLS
Trigger: GCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGG...GACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAAGTTGTGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGCGGCGGTTGCAGAGATaGCAGGCGTGCGGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEERRLQR*QACGRS
Trigger: CGAGCGGCCGCACGCCTGTCATCTCTGCAACCGCCG...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGCCTTGCACCGGTGTaGACCAGCAGGTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGGLAPV*TSRWRS
Trigger: GCTGCGCCACCTGCTGGTTCACACCGGTGCAAGGCC...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGCGTAAGAGGCTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCCCGTCCCGGAGCGGTTaGCCGTGCAGCCGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: LRKRLSCNFRFLCLGLCSPSRSG*PCSRLS
Trigger: GCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGG...GGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGTGTGGCTGCGGCGGTaGCGGGCCAAGTTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGVWLRR*RAKLEL
Trigger: CAGCTCCAACTTGGCCCGCCACCGCCGCAGCCACAC...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCCCTGGGAAGGGTCAGTaGCCCCATGTGGCTGATGTC +
Preference number: 4 (lower is better)
Translates to: FTAVSRSTSPTSAAGLLPPGKGQ*PHVADV
Trigger: GACATCAGCCACATGGGGCCACTGACCCTTCCCAGG...GGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGCCAGCAGGTGCTGCATaGGGCTGGAGCGACGCTGAA +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGPAGAA*GWSDAE
Trigger: TTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGG...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTC +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGEPAQG*PWPHIF
Trigger: GAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTC...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGCCGGTCGCAGCCAGTaGTTGCAGAGTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGAGRSQ*LQSSRS
Trigger: GCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGC...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTCCGTCCCGGAGCGGTTaGCCGTGCAGCCGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLPSRSG*PCSRLS
Trigger: GCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGG...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGTGTGGCTGCGGCGGTaGCGGGCCAAGTTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWVWLRR*RAKLEL
Trigger: CAGCTCCAACTTGGCCCGCCACCGCCGCAGCCACAC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGAGCGATTCCCGGGCATaGGTTCGCAGGTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWESDSRA*VRRWRS
Trigger: GCTGCGCCACCTGCGAACCCATGCCCGGGAATCGCT...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGTGCTTCGTCAGGTGTaGGCTCTGGCGGAAGCGGCG +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWVLRQV*ALAEAA
Trigger: CGCCGCTTCCGCCAGAGCTCACACCTGACGAAGCAC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGGCCTTGCACCGGTGTaGACCAGCAGGTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICGLAPV*TSRWRS
Trigger: GCTGCGCCACCTGCTGGTTCACACCGGTGCAAGGCC...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGCCTAGGCCTGGACTCTaGGAGCCTGGGATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEPRPGL*EPGILL
Trigger: GAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCTAGG...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp TCACAACTTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTAGGCCTGGACTCTaGGAGCCTGGGATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SQLHCRQQEYLPNQCCWSPRPGL*EPGILL
Trigger: GAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCTAGG...AGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAAGTTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGTCGCAGCCAGTGGTTaGAGAGTTCCCGGAGCCGGC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWVAASG*RVPGAG
Trigger: GCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGAC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGCTCCCCAACCAGTGCTaGTGGTCTCCTGCCCTACAG +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGLPNQC*WSPALQ
Trigger: CTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAG...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGTCTCCCCCGTGTGGATaGGTTGGTGGCGTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEESPPCG*VGGVPG
Trigger: ACCTGGCACGCCACCAACGCATCCACACGGGGGAGA...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGGCCGGTCGCAGCCAGTaGTTGCAGAGTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: GSSCVQKSSHTTDIGRIEAGRSQ*LQSSRS
Trigger: GCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGC...CTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGCTCAGCAGGCCTTATaGGTGCTGGCTGAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGAQQAL*VLAEVE
Trigger: CTCCACCTCAGCCAGCACCCATAAGGCCTGCTGAGC...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGATGGTGGCGTGCCAGGTaGGCATTCTGGGTGAACCCC +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGWWRAR*AFWVNP
Trigger: GGGGTTCACCCAGAATGCCCACCTGGCACGCCACCA...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGAGCGATTCCCGGGCATaGGTTCGCAGGTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWSDSRA*VRRWRS
Trigger: GCTGCGCCACCTGCGAACCCATGCCCGGGAATCGCT...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCGTAAGAAGCCATGAAGGGCCCTaGGAAGGGTCAGTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: GVPPQPVLLVSCPTVCVRSHEGP*EGSVAP
Trigger: TGGGGCCACTGACCCTTCCCAGGGCCCTTCATGGCT...TCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp AGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTC +
Preference number: 4 (lower is better)
Translates to: SCVQKSSHTTDIGRIESLEPAQG*PWPHIF
Trigger: GAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTC...CAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp CCTGCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGCCAAGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTC +
Preference number: 4 (lower is better)
Translates to: PATSGFSVWDSAPMTTGQEPAQG*PWPHIF
Trigger: GAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTC...TTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGTCGCAGCCAGTGGTTaGAGAGTTCCCGGAGCCGGC +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKVAASG*RVPGAG
Trigger: GCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGAC...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTCGCAGCCAGTGGTTaGAGAGTTCCCGGAGCCGGC +
Preference number: 4 (lower is better)
Translates to: VQKSSHTTDIGRIESLGEVAASG*RVPGAG
Trigger: GCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGAC...CTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp GATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGTCGCAGCCAGTGGTTaGAGAGTTCCCGGAGCCGGC +
Preference number: 4 (lower is better)
Translates to: DRAASKSLPTPQTSEGSRVAASG*RVPGAG
Trigger: GCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGAC...TCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp TGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGTCGCAGCCAGTGGTTaGAGAGTTCCCGGAGCCGGC +
Preference number: 4 (lower is better)
Translates to: CVQKSSHTTDIGRIESLGVAASG*RVPGAG
Trigger: GCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGAC...ACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGCGGAAGCGGCGGTTaGAGAGATGACAGGCGTGCG +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKGGSGG*RDDRRA
Trigger: CGCACGCCTGTCATCTCTGCAACCGCCGCTTCCGCC...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGATGCGTTGGTGGCGTaGCAGGTGGGCATTCTGGGT +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGDALVA*QVGILG
Trigger: ACCCAGAATGCCCACCTGGCACGCCACCAACGCATC...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCATCTGAAAAGCTGGTaGGCCACCTCAGGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: VSRSTSPTSAAGLLPYSLHLKSW*ATSGLG
Trigger: GCCTAGGCCTGAGGTGGCCCACCAGCTTTTCAGATG...CAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGCCGGTCGCAGCCAGTaGTTGCAGAGTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKAGRSQ*LQSSRS
Trigger: GCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGC...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGTCCTGGAGTATCTCCTaGGGCTCTGGGCTCATTGGC +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGSWSIS*GSGLIG
Trigger: GCCAATGAGCCCAGAGCCCCAGGAGATACTCCAGGA...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATACTCCCCCTGGGGCTCTaGGGCATCGGAAGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTILPLGL*GIGSSS
Trigger: AGAGGAGCTTCCGATGCCCCAGAGCCCCAGGGGGAG...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
CDS-3UTR CCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGAACTGCATCTCCCCCTaGGGCTCTGGGGCATCGGAA +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGNCISP*GSGASE
Trigger: TTCCGATGCCCCAGAGCCCCAGGGGGAGATGCAGTT...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGTGGTGGCGTGCCAGGTaGGCATTCTGGGTGAACCCC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWWWRAR*AFWVNP
Trigger: GGGGTTCACCCAGAATGCCCACCTGGCACGCCACCA...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGCCATGAAGGGCCCTaGGAAGGGTCAGTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: EDRAASKSLPTPQTSEGSSHEGP*EGSVAP
Trigger: TGGGGCCACTGACCCTTCCCAGGGCCCTTCATGGCT...CGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTGTGCTTCGTCAGGTGTaGGCTCTGGCGGAAGCGGCG +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLVLRQV*ALAEAA
Trigger: CGCCGCTTCCGCCAGAGCTCACACCTGACGAAGCAC...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGGTGCTTCGTCAGGTGTaGGCTCTGGCGGAAGCGGCG +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKVLRQV*ALAEAA
Trigger: CGCCGCTTCCGCCAGAGCTCACACCTGACGAAGCAC...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTCCAGCAGGTGCTGCATaGGGCTGGAGCGACGCTGAA +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICPAGAA*GWSDAE
Trigger: TTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGG...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATACCAGCAGGTGCTGCATaGGGCTGGAGCGACGCTGAA +
Preference number: 4 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTIPAGAA*GWSDAE
Trigger: TTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGG...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGGTGGGCATTCTGGGTaGACCCCTCTCCACATTCGT +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWEGGHSG*TPLHIR
Trigger: ACGAATGTGGAGAGGGGTTCACCCAGAATGCCCACC...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGGGTGGGCATTCTGGGTaGACCCCTCTCCACATTCGT +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEGGHSG*TPLHIR
Trigger: ACGAATGTGGAGAGGGGTTCACCCAGAATGCCCACC...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGTTGACCCTGTGTGTGTaGTCAGGTGGCGCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWELTLCV*SGGAAG
Trigger: ACCTGCAGCGCCACCTGATCACACACACAGGGTCAA...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGATTGACCCTGTGTGTGTaGTCAGGTGGCGCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGLTLCV*SGGAAG
Trigger: ACCTGCAGCGCCACCTGATCACACACACAGGGTCAA...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGGCCTTGCACCGGTGTaGACCAGCAGGTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGGLAPV*TSRWRS
Trigger: GCTGCGCCACCTGCTGGTTCACACCGGTGCAAGGCC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGATTTTCCTCAAGCCATaGAGGGCCCTGGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: VSRSTSPTSAAGLLPYSLIFLKP*RALGRV
Trigger: GACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAAT...CAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGCCTAGGCCTGGACTCTaGGAGCCTGGGATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKPRPGL*EPGILL
Trigger: GAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCTAGG...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTC +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNEPAQG*PWPHIF
Trigger: GAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTC...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTGTCGCAGCCAGTGGTTaGAGAGTTCCCGGAGCCGGC +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLVAASG*RVPGAG
Trigger: GCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGAC...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGCATCTGAAAAGCTGGTaGGCCACCTCAGGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEHLKSW*ATSGLG
Trigger: GCCTAGGCCTGAGGTGGCCCACCAGCTTTTCAGATG...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGCCAAGTAGCCGGTCGCAGCCAGTaGTTGCAGAGTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: ATSGFSVWDSAPMTTGQVAGRSQ*LQSSRS
Trigger: GCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGC...TACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGGCCGGTCGCAGCCAGTaGTTGCAGAGTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKAGRSQ*LQSSRS
Trigger: GCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGC...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGAGCCATGAAGGGCCCTaGGAAGGGTTGCTTTCTCGT +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGSHEGP*EGLLSR
Trigger: ACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCT...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCACAGCCGCCAGCTCTTaGTCTCTGGAATTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: FTAVSRSTSPTSAAGLLPTAASS*SLEFSS
Trigger: TGAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGT...GGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGAACTGCATCTCCCCCTaGGGCTCTGGGGCATCGGAA +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWNCISP*GSGASE
Trigger: TTCCGATGCCCCAGAGCCCCAGGGGGAGATGCAGTT...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
CDS-3UTR CCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGTCAGGTGTGAGCTCTaGCGGAAGCGGCGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKVRCEL*RKRRLQ
Trigger: CTGCAACCGCCGCTTCCGCCAGAGCTCACACCTGAC...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGTGAGATTCTTTCCCTaGGCATGTGCCAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGVRFFP*ACASRC
Trigger: GCACCTGCTGGCACATGCCCAGGGAAAGAATCTCAC...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATATGGTGGCGTGCCAGGTaGGCATTCTGGGTGAACCCC +
Preference number: 4 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTIWWRAR*AFWVNP
Trigger: GGGGTTCACCCAGAATGCCCACCTGGCACGCCACCA...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGTGTGGCTGCGGCGGTaGCGGGCCAAGTTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGVWLRR*RAKLEL
Trigger: CAGCTCCAACTTGGCCCGCCACCGCCGCAGCCACAC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGGTGTGTGTGATCAGGTaGCGCTGCAGGTGCGCATTG +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEVCVIR*RCRCAL
Trigger: CAATGCGCACCTGCAGCGCCACCTGATCACACACAC...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGCATGGGTTCGCAGGTaGCGCAGCAGGTGTGAATTA +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGAWVRR*RSRCEL
Trigger: TAATTCACACCTGCTGCGCCACCTGCGAACCCATGC...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGAGCGATTCCCGGGCATaGGTTCGCAGGTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGSDSRA*VRRWRS
Trigger: GCTGCGCCACCTGCGAACCCATGCCCGGGAATCGCT...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: FTAVSRSTSPTSAAGLLPGPISS*YWKHLK
Trigger: TTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCC...GGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGGGTTGCAAGTTGGGGTaGGATTGTAACTGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEGCKLG*DCNWWA
Trigger: GGCCCACCAGTTACAATCTCACCCCAACTTGCAACC...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGCGGCGGTTGCAGAGATaGCAGGCGTGCGGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRRRLQR*QACGRS
Trigger: CGAGCGGCCGCACGCCTGTCATCTCTGCAACCGCCG...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATCGGCGGTTGCAGAGATaGCAGGCGTGCGGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHRRLQR*QACGRS
Trigger: CGAGCGGCCGCACGCCTGTCATCTCTGCAACCGCCG...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGGTGGGCATTCTGGGTaGACCCCTCTCCACATTCGT +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWGGHSG*TPLHIR
Trigger: ACGAATGTGGAGAGGGGTTCACCCAGAATGCCCACC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGGTGTGAATTACGGCTaGAGCTGCGGCCACACAGTG +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWGVNYG*SCGHTV
Trigger: CACTGTGTGGCCGCAGCTTCAGCCGTAATTCACACC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGAGGTATCCTCAAAGGTaGGGGACTCCAGTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWRYPQR*GTPVAP
Trigger: TGGGGCCACTGGAGTCCCTCACCTTTGAGGATACCT...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115509.8
CDS-3UTR GCA 90 bp GCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGCCAAGTACCTAGGCCTGGACTCTaGGAGCCTGGGATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: ATSGFSVWDSAPMTTGQVPRPGL*EPGILL
Trigger: GAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCTAGG...TACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCCTAGGCCTGGACTCTaGGAGCCTGGGATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLPRPGL*EPGILL
Trigger: GAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCTAGG...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp TTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCAAATCCAAGAGGGTTTaGAGGCCAAGCTCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: FTAVSRSTSPTSAAGLLPKSKRV*RPSSLL
Trigger: GAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTT...GGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGGCGGAAGCGGCGGTTaGAGAGATGACAGGCGTGCG +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGGGSGG*RDDRRA
Trigger: CGCACGCCTGTCATCTCTGCAACCGCCGCTTCCGCC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGCTTTCCCTGGGCATGTaGCAGCAGGTGCTGCATGAG +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWLSLGM*QQVLHE
Trigger: CTCATGCAGCACCTGCTGGCACATGCCCAGGGAAAG...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATTCTCCCCCGTGTGGATaGGTTGGTGGCGTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNSPPCG*VGGVPG
Trigger: ACCTGGCACGCCACCAACGCATCCACACGGGGGAGA...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGCATCTGAAAAGCTGGTaGGCCACCTCAGGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWHLKSW*ATSGLG
Trigger: GCCTAGGCCTGAGGTGGCCCACCAGCTTTTCAGATG...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGAAGCATCTGAAAAGCTaGTGGGCCACCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGKHLKS*WATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTT...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGTCCTGGAGTATCTCCTaGGGCTCTGGGCTCATTGGC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWSWSIS*GSGLIG
Trigger: GCCAATGAGCCCAGAGCCCCAGGAGATACTCCAGGA...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGCCATGAAGGGCCCTaGGAAGGGTTGCTTTCTCGT +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEESHEGP*EGLLSR
Trigger: ACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCT...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGAAGGATCGAGAGCTTaGGTGAGGTTGCAAGTTGGG +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGEGSRA*VRLQVG
Trigger: CCCAACTTGCAACCTCACCCAAGCTCTCGATCCTTC...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGGTCAGGTGTGAGCTCTaGCGGAAGCGGCGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGVRCEL*RKRRLQ
Trigger: CTGCAACCGCCGCTTCCGCCAGAGCTCACACCTGAC...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TCACAACTTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTGATACTGGAAGCATCTaGAAAGCTGGTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: SQLHCRQQEYLPNQCCWSDTGSI*KAGGPP
Trigger: AGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATC...AGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAAGTTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGATACTGGAAGCATCTaGAAAGCTGGTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWEDTGSI*KAGGPP
Trigger: AGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATC...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGCTATTTTGTTCCTCTaGGATGATGTCTGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGAILFL*DDVCRG
Trigger: GCCCCTGCAGACATCATCTCAGAGGAACAAAATAGC...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGCCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: LWGRSKVEELGGEICVKGPSSLL*GILKGE
Trigger: CTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGG...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTTGCGCATGTGCAGCTTaGGGATCGAGCTGCGTCCAA +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICCACAA*GSSCVQ
Trigger: TTGGACGCAGCTCGATCCTCAAGCTGCACATGCGCA...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGATTCACTGCTCCGGGATaGTCTTGTTCCAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: VKGRGKLWGRSKVEELGGFTAPG*SCSRAS
Trigger: TGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAA...TCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCGTAAGAAAGCATCTGAAAAGCTaGTGGGCCACCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: GVPPQPVLLVSCPTVCVRKHLKS*WATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTT...TCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGTTGGCCAATTTGAACTaGGGGCCAGTCTCCACTCCT +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWELANLN*GPVSTP
Trigger: AGGAGTGGAGACTGGCCCCCAGTTCAAATTGGCCAA...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGTTGGCCAATTTGAACTaGGGGCCAGTCTCCACTCCT +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGLANLN*GPVSTP
Trigger: AGGAGTGGAGACTGGCCCCCAGTTCAAATTGGCCAA...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGGTCAGGTGTGAGCTCTaGCGGAAGCGGCGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWVRCEL*RKRRLQ
Trigger: CTGCAACCGCCGCTTCCGCCAGAGCTCACACCTGAC...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGTGAGATTCTTTCCCTaGGCATGTGCCAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWVRFFP*ACASRC
Trigger: GCACCTGCTGGCACATGCCCAGGGAAAGAATCTCAC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTCAGCGGCCACAGACCTaGCAGGAGAAGGGTCGTTCA +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLQRPQT*QEKGRS
Trigger: TGAACGACCCTTCTCCTGCCAGGTCTGTGGCCGCTG...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGCATGGGTTCGCAGGTaGCGCAGCAGGTGTGAATTA +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWAWVRR*RSRCEL
Trigger: TAATTCACACCTGCTGCGCCACCTGCGAACCCATGC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCCTGGGAAGGGTCAGTaGCCCCATGTGGCTGATGTC +
Preference number: 4 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLPGKGQ*PHVADV
Trigger: GACATCAGCCACATGGGGCCACTGACCCTTCCCAGG...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGGCTATTTTGTTCCTCTaGGATGATGTCTGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEAILFL*DDVCRG
Trigger: GCCCCTGCAGACATCATCTCAGAGGAACAAAATAGC...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAAGGTATCCTCAAAGGTaGGGGACTCCAACACAGCCG +
Preference number: 4 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTIRYPQR*GTPTQP
Trigger: CGGCTGTGTTGGAGTCCCTCACCTTTGAGGATACCT...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTAGGTATCCTCAAAGGTaGGGGACTCCAACACAGCCG +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICRYPQR*GTPTQP
Trigger: CGGCTGTGTTGGAGTCCCTCACCTTTGAGGATACCT...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp TCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCAAGTAGGTATCCTCAAAGGTaGGGGACTCCAACACAGCCG +
Preference number: 4 (lower is better)
Translates to: SSHTTDIGRIESLGEVASRYPQR*GTPTQP
Trigger: CGGCTGTGTTGGAGTCCCTCACCTTTGAGGATACCT...ACTTGCAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGCCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGPSSLL*GILKGE
Trigger: CTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGG...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCGTAAGACCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: GVPPQPVLLVSCPTVCVRPSSLL*GILKGE
Trigger: CTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGG...TCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGGTTGCAAGTTGGGGTaGGATTGTAACTGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICGCKLG*DCNWWA
Trigger: GGCCCACCAGTTACAATCTCACCCCAACTTGCAACC...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGTGCGCATGTGCAGCTTaGGGATCGAGCTGCGTCCAA +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKCACAA*GSSCVQ
Trigger: TTGGACGCAGCTCGATCCTCAAGCTGCACATGCGCA...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATTGCGCATGTGCAGCTTaGGGATCGAGCTGCGTCCAA +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNCACAA*GSSCVQ
Trigger: TTGGACGCAGCTCGATCCTCAAGCTGCACATGCGCA...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTTGACCCTGTGTGTGTaGTCAGGTGGCGCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGLTLCV*SGGAAG
Trigger: ACCTGCAGCGCCACCTGATCACACACACAGGGTCAA...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTGGTGTGAATTACGGCTaGAGCTGCGGCCACACAGTG +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLGVNYG*SCGHTV
Trigger: CACTGTGTGGCCGCAGCTTCAGCCGTAATTCACACC...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGATTTTCCTCAAGCCATaGAGGGCCCTGGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: VQKSSHTTDIGRIESLGEIFLKP*RALGRV
Trigger: GACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAAT...CTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp GAGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGTTCACTGCTCCGGGATaGTCTTGTTCCAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: EDRAASKSLPTPQTSEGSFTAPG*SCSRAS
Trigger: TGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAA...CGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTC +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHEPAQG*PWPHIF
Trigger: GAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTC...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGCTCCCCAACCAGTGCTaGTGGTCTCCTGCCCTACAG +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWLPNQC*WSPALQ
Trigger: CTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAG...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGGGCGGAAGCGGCGGTTaGAGAGATGACAGGCGTGCG +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRGGSGG*RDDRRA
Trigger: CGCACGCCTGTCATCTCTGCAACCGCCGCTTCCGCC...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp TATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCACTTTCCCTGGGCATGTaGCAGCAGGTGCTGCATGAG +
Preference number: 4 (lower is better)
Translates to: YSCREVHMGQGCWNMGEALSLGM*QQVLHE
Trigger: CTCATGCAGCACCTGCTGGCACATGCCCAGGGAAAG...TGCTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGGAACAGAGGACAGCTaGCATCTCTGGCACTTTTGT +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWEGTEDS*HLWHFC
Trigger: ACAAAAGTGCCAGAGATGGCAGCTGTCCTCTGTTCC...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGGATGCGTTGGTGGCGTaGCAGGTGGGCATTCTGGGT +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWDALVA*QVGILG
Trigger: ACCCAGAATGCCCACCTGGCACGCCACCAACGCATC...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGATGCGTTGGTGGCGTaGCAGGTGGGCATTCTGGGT +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGDALVA*QVGILG
Trigger: ACCCAGAATGCCCACCTGGCACGCCACCAACGCATC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGCCAAGTACATCTGAAAAGCTGGTaGGCCACCTCAGGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: ATSGFSVWDSAPMTTGQVHLKSW*ATSGLG
Trigger: GCCTAGGCCTGAGGTGGCCCACCAGCTTTTCAGATG...TACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp GAGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAAGCATCTGAAAAGCTaGTGGGCCACCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: EDRAASKSLPTPQTSEGSKHLKS*WATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTT...CGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp ATTGTAACTGGTGGGCCTGTAGATGAGACATCTCTGGGAAGTTTACCCCACAATGCCGGTCGCAGCCAGTaGTTGCAGAGTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: IVTGGPVDETSLGSLPHNAGRSQ*LQSSRS
Trigger: GCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGC...ATTGTGGGGTAAACTTCCCAGAGATGTCTCATCTACAGGCCCACCAGTTACAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
CDS-3UTR CCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATCTCCCCCTGGGGCTCTaGGGCATCGGAAGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHLPLGL*GIGSSS
Trigger: AGAGGAGCTTCCGATGCCCCAGAGCCCCAGGGGGAG...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
CDS-3UTR CCA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGTCTTCAGAGGACAGATaGTCCTTGTCCTTGGCATGG +
Preference number: 4 (lower is better)
Translates to: SREEVNCGGGRRWRNWEESSEDR*SLSLAW
Trigger: CCATGCCAAGGACAAGGACCATCTGTCCTCTGAAGA...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGCAGCGGCCACAGACCTaGCAGGAGAAGGGTCGTTCA +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWQRPQT*QEKGRS
Trigger: TGAACGACCCTTCTCCTGCCAGGTCTGTGGCCGCTG...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTGTGTGTGTGATCAGGTaGCGCTGCAGGTGCGCATTG +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLVCVIR*RCRCAL
Trigger: CAATGCGCACCTGCAGCGCCACCTGATCACACACAC...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGGATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGATACTGGAAGCATCTaGAAAGCTGGTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: RIELRPKVFPHHRHRKDRDTGSI*KAGGPP
Trigger: AGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATC...TCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGGPISS*YWKHLK
Trigger: TTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCC...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGATTTGTTCCTCTGAGATaGTGTCTGCAGGGGCATTCT +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGFVPLR*CLQGHS
Trigger: AGAATGCCCCTGCAGACATCATCTCAGAGGAACAAA...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGTTTGTTCCTCTGAGATaGTGTCTGCAGGGGCATTCT +
Preference number: 4 (lower is better)
Translates to: ESREEVNCGGGRRWRNWEFVPLR*CLQGHS
Trigger: AGAATGCCCCTGCAGACATCATCTCAGAGGAACAAA...CTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGAGGTATCCTCAAAGGTaGGGGACTCCAACACAGCCG +
Preference number: 4 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLRYPQR*GTPTQP
Trigger: CGGCTGTGTTGGAGTCCCTCACCTTTGAGGATACCT...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGAATCTGCTGGTGGCTaGTCAGCTGGGAATTTTGGG +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICESAGG*SAGNFG
Trigger: CCCAAAATTCCCAGCTGATCAGCCACCAGCAGATTC...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGCCTAGGCCTGGACTCTaGGAGCCTGGGATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRPRPGL*EPGILL
Trigger: GAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCTAGG...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAAAATCCAAGAGGGTTTaGAGGCCAAGCTCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGKSKRV*RPSSLL
Trigger: GAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTT...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGTTTGGCGAAAGCTTTTaGCACATTGGGCACAGTGGT +
Preference number: 4 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGFGESF*HIGHSG
Trigger: ACCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAA...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGAAGCATCTGAAAAGCTaGTGGGCCACCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKKHLKS*WATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTT...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTCTGTGGCTGGGGACCTaGGAAGGGCTATTTTGTTCC +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLLWLGT*EGLFCS
Trigger: GGAACAAAATAGCCCTTCCCAGGTCCCCAGCCACAG...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGCTGTGGCTGGGGACCTaGGAAGGGCTATTTTGTTCC +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGLWLGT*EGLFCS
Trigger: GGAACAAAATAGCCCTTCCCAGGTCCCCAGCCACAG...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGAAGGATCGAGAGCTTaGGTGAGGTTGCAAGTTGGG +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICEGSRA*VRLQVG
Trigger: CCCAACTTGCAACCTCACCCAAGCTCTCGATCCTTC...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGGTGAGATTCTTTCCCTaGGCATGTGCCAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKVRFFP*ACASRC
Trigger: GCACCTGCTGGCACATGCCCAGGGAAAGAATCTCAC...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGACAGCTGCCATCTCTaGCACTTTTGTCTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: LESREEVNCGGGRRWRNWDSCHL*HFCLAF
Trigger: GAAGGCAAGACAAAAGTGCCAGAGATGGCAGCTGTC...CCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTGATACTGGAAGCATCTaGAAAGCTGGTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLDTGSI*KAGGPP
Trigger: AGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATC...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCTTATGGGTGCTGGCTaGGGTGGAGGTAACTCATTC +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKLMGAG*GGGNSF
Trigger: GAATGAGTTACCTCCACCTCAGCCAGCACCCATAAG...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTCTTCTGGATTTGGCGTaGGATTCTTTCCCTGGGCAT +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICLLDLA*DSFPGH
Trigger: ATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAG...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGCTTCTGGATTTGGCGTaGGATTCTTTCCCTGGGCAT +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKLLDLA*DSFPGH
Trigger: ATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAG...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATGAATCTGCTGGTGGCTaGTCAGCTGGGAATTTTGGG +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNESAGG*SAGNFG
Trigger: CCCAAAATTCCCAGCTGATCAGCCACCAGCAGATTC...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGGAATCTGCTGGTGGCTaGTCAGCTGGGAATTTTGGG +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGESAGG*SAGNFG
Trigger: CCCAAAATTCCCAGCTGATCAGCCACCAGCAGATTC...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGATTCCTTTTCTTGCTTTaGCCCTGTGTGTGTGATCAG +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGFLFLL*PCVCDQ
Trigger: CTGATCACACACACAGGGTCAAAGCAAGAAAAGGAA...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGATTCCTTTTCTTGCTTTaGCCCTGTGTGTGTGATCAG +
Preference number: 4 (lower is better)
Translates to: VKGRGKLWGRSKVEELGGFLFLL*PCVCDQ
Trigger: CTGATCACACACACAGGGTCAAAGCAAGAAAAGGAA...TCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGTTCACTGCTCCGGGATaGTCTTGTTCCAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKFTAPG*SCSRAS
Trigger: TGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAA...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATAAGCATCTGAAAAGCTaGTGGGCCACCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNKHLKS*WATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTT...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGCCAAGTAAAGCATCTGAAAAGCTaGTGGGCCACCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: ATSGFSVWDSAPMTTGQVKHLKS*WATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTT...TACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGGCTCAGCAGGCCTTATaGGTGCTGGCTGAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRAQQAL*VLAEVE
Trigger: CTCCACCTCAGCCAGCACCCATAAGGCCTGCTGAGC...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACG +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICSGFSV*DSAPMT
Trigger: CGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGA...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACG +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKSGFSV*DSAPMT
Trigger: CGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGA...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGGAAGGATCGAGAGCTTaGGTGAGGTTGCAAGTTGGG +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGEGSRA*VRLQVG
Trigger: CCCAACTTGCAACCTCACCCAAGCTCTCGATCCTTC...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATATCTTCAGAGGACAGATaGTCCTTGTCCTTGGCATGG +
Preference number: 4 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTISSEDR*SLSLAW
Trigger: CCATGCCAAGGACAAGGACCATCTGTCCTCTGAAGA...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGCAGCGGCCACAGACCTaGCAGGAGAAGGGTCGTTCA +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRQRPQT*QEKGRS
Trigger: TGAACGACCCTTCTCCTGCCAGGTCTGTGGCCGCTG...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGGCATGGGTTCGCAGGTaGCGCAGCAGGTGTGAATTA +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWAWVRR*RSRCEL
Trigger: TAATTCACACCTGCTGCGCCACCTGCGAACCCATGC...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGTGCTTCCAAATCCAGTaGCCCCATGTGGCTGATGTC +
Preference number: 4 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLCFQIQ*PHVADV
Trigger: GACATCAGCCACATGGGGCCACTGGATTTGGAAGCA...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117606.2
CDS-3UTR CCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATGGTGAGGGACTCCAGTaGCCCCATGTGGCTGATGTC +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHGEGLQ*PHVADV
Trigger: GACATCAGCCACATGGGGCCACTGGAGTCCCTCACC...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115509.8
CDS-3UTR TCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGATACTGGAAGCATCTaGAAAGCTGGTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGDTGSI*KAGGPP
Trigger: AGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: KLWGRSKVEELGGEICVKGPISS*YWKHLK
Trigger: TTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCC...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: DRAASKSLPTPQTSEGSRGPISS*YWKHLK
Trigger: TTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCC...TCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp CTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: LSCNFRFLCLGLCSNDDRGPISS*YWKHLK
Trigger: TTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCC...CCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKPSSLL*GILKGE
Trigger: CTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGG...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLPSSLL*GILKGE
Trigger: CTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGG...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp TATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCATGGTGGGCCTGTAGATaGGACATCTCTGGGAAGTTT +
Preference number: 4 (lower is better)
Translates to: YSCREVHMGQGCWNMGEAWWACR*DISGKF
Trigger: AAACTTCCCAGAGATGTCTCATCTACAGGCCCACCA...TGCTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
CDS-3UTR TCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGGGTGTGAATTACGGCTaGAGCTGCGGCCACACAGTG +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRGVNYG*SCGHTV
Trigger: CACTGTGTGGCCGCAGCTTCAGCCGTAATTCACACC...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GGTGAGATTGTAACTGGTGGGCCTGTAGATGAGACATCTCTGGGAAGTTTACCCTTCACTGCTCCGGGATaGTCTTGTTCCAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: GEIVTGGPVDETSLGSLPFTAPG*SCSRAS
Trigger: TGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAA...GGGTAAACTTCCCAGAGATGTCTCATCTACAGGCCCACCAGTTACAATCTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
CDS-3UTR GCA 90 bp GTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGAAATCCAAGAGGGTTTaGAGGCCAAGCTCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: VQKSSHTTDIGRIESLGEKSKRV*RPSSLL
Trigger: GAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTT...CTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR GCA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATACGTAAGAGGCTCTCCTaGAACTTCAGGTTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTIRKRLS*NFRFLC
Trigger: ACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACG...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGCTTTCCCTGGGCATGTaGCAGCAGGTGCTGCATGAG +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRLSLGM*QQVLHE
Trigger: CTCATGCAGCACCTGCTGGCACATGCCCAGGGAAAG...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATCATCTGAAAAGCTGGTaGGCCACCTCAGGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHHLKSW*ATSGLG
Trigger: GCCTAGGCCTGAGGTGGCCCACCAGCTTTTCAGATG...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp TATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCAGAAGCTAAAATCCAGTaGCCCCATGTGGCTGATGTC +
Preference number: 4 (lower is better)
Translates to: YSCREVHMGQGCWNMGEAEAKIQ*PHVADV
Trigger: GACATCAGCCACATGGGGCCACTGGATTTTAGCTTC...TGCTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGGAAGCTAAAATCCAGTaGCCCCATGTGGCTGATGTC +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKEAKIQ*PHVADV
Trigger: GACATCAGCCACATGGGGCCACTGGATTTTAGCTTC...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTCCAGCTCTTGGTCTCTaGAATTTTCCTCAAGCCATG +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICPALGL*NFPQAM
Trigger: CATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGG...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp ATCGAGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCCAGCTCTTGGTCTCTaGAATTTTCCTCAAGCCATG +
Preference number: 4 (lower is better)
Translates to: IELRPKVFPHHRHRKDREPALGL*NFPQAM
Trigger: CATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGG...CTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp GCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGCCAAGTAACAGCCGCCAGCTCTTaGTCTCTGGAATTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: ATSGFSVWDSAPMTTGQVTAASS*SLEFSS
Trigger: TGAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGT...TACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATTCTTCAGAGGACAGATaGTCCTTGTCCTTGGCATGG +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNSSEDR*SLSLAW
Trigger: CCATGCCAAGGACAAGGACCATCTGTCCTCTGAAGA...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
3UTR CAA 72 bp TCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTaGGGTGAGGTTGCAAGTTGGGGTGAGATTGTAACT +
Preference number: 4 (lower is better)
Translates to: SSHTTDIGRIES*GEVASWGEIVT
Trigger: AGTTACAATCTCACCCCAACTTGCAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR TCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATGGTTGCAAGTTGGGGTaGGATTGTAACTGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHGCKLG*DCNWWA
Trigger: GGCCCACCAGTTACAATCTCACCCCAACTTGCAACC...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGCTTCTGGATTTGGCGTaGGATTCTTTCCCTGGGCAT +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWLLDLA*DSFPGH
Trigger: ATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAG...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTTTCCTTTTCTTGCTTTaGCCCTGTGTGTGTGATCAG +
Preference number: 4 (lower is better)
Translates to: RGKLWGRSKVEELGGEICFLFLL*PCVCDQ
Trigger: CTGATCACACACACAGGGTCAAAGCAAGAAAAGGAA...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTAAATCCAAGAGGGTTTaGAGGCCAAGCTCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLKSKRV*RPSSLL
Trigger: GAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTT...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GGAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGAAATCCAAGAGGGTTTaGAGGCCAAGCTCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: GILFMQGGAHGTRLLEHGKSKRV*RPSSLL
Trigger: GAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTT...CCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCGTAAGAGGCTCTCCTaGAACTTCAGGTTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKRKRLS*NFRFLC
Trigger: ACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACG...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGGAACAGAGGACAGCTaGCATCTCTGGCACTTTTGT +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGGTEDS*HLWHFC
Trigger: ACAAAAGTGCCAGAGATGGCAGCTGTCCTCTGTTCC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGGGTGAGGTTGCCAGCTCTTGGTCTCTaGAATTTTCCTCAAGCCATG +
Preference number: 4 (lower is better)
Translates to: KSLPTPQTSEGSRAWVRLPALGL*NFPQAM
Trigger: CATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGG...CAACCTCACCCAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACG +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGSGFSV*DSAPMT
Trigger: CGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGA...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGATTTTGTCTTGCCTTCTaGATTTGGCGTGAGATTCTT +
Preference number: 4 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGFCLAF*IWREIL
Trigger: AAGAATCTCACGCCAAATCCAGAAGGCAAGACAAAA...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGATTTTGTCTTGCCTTCTaGATTTGGCGTGAGATTCTT +
Preference number: 4 (lower is better)
Translates to: VKGRGKLWGRSKVEELGGFCLAF*IWREIL
Trigger: AAGAATCTCACGCCAAATCCAGAAGGCAAGACAAAA...TCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGACAGCTGCCATCTCTaGCACTTTTGTCTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGDSCHL*HFCLAF
Trigger: GAAGGCAAGACAAAAGTGCCAGAGATGGCAGCTGTC...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATCTTATGGGTGCTGGCTaGGGTGGAGGTAACTCATTC +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHLMGAG*GGGNSF
Trigger: GAATGAGTTACCTCCACCTCAGCCAGCACCCATAAG...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTTCACTGCTCCGGGATaGTCTTGTTCCAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRFTAPG*SCSRAS
Trigger: TGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAA...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR GCA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTTTTGGCGAAAGCTTTTaGCACATTGGGCACAGTGGT +
Preference number: 4 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGFGESF*HIGHSG
Trigger: ACCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAA...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGCCAGCTCTTGGTCTCTaGAATTTTCCTCAAGCCATG +
Preference number: 4 (lower is better)
Translates to: NKFLESREEVNCGGGRRWPALGL*NFPQAM
Trigger: CATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGG...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATTGGTGGGCCTGTAGATaGGACATCTCTGGGAAGTTT +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHWWACR*DISGKF
Trigger: AAACTTCCCAGAGATGTCTCATCTACAGGCCCACCA...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
CDS-3UTR GCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGGGAACAGAGGACAGCTaGCATCTCTGGCACTTTTGT +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRGTEDS*HLWHFC
Trigger: ACAAAAGTGCCAGAGATGGCAGCTGTCCTCTGTTCC...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATACAGCCGCCAGCTCTTaGTCTCTGGAATTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHTAASS*SLEFSS
Trigger: TGAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGT...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp AAAAACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGACAGCCGCCAGCTCTTaGTCTCTGGAATTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: KNKFLESREEVNCGGGRRTAASS*SLEFSS
Trigger: TGAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGT...CCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR TCA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHGPISS*YWKHLK
Trigger: TTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCC...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CCA 90 bp GAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATTTTTGTCTTGCCTTCTaGATTTGGCGTGAGATTCTT +
Preference number: 4 (lower is better)
Translates to: EGGGTGRRDMCEGDTIGNFCLAF*IWREIL
Trigger: AAGAATCTCACGCCAAATCCAGAAGGCAAGACAAAA...ATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp TTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTCCGTCCCGGAGCGGTaGGCCGTGCAGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: FTAVSRSTSPTSAAGLLPSVPER*AVQPAQ
Trigger: CTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGGA...GGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CAA 90 bp CTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGTCCGTCCCGGAGCGGTaGGCCGTGCAGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: LWGRSKVEELGGEICVKGSVPER*AVQPAQ
Trigger: CTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGGA...CCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCGTAAGATCCGTCCCGGAGCGGTaGGCCGTGCAGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: GVPPQPVLLVSCPTVCVRSVPER*AVQPAQ
Trigger: CTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGGA...TCTTACGCAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS TCA 90 bp CCCTGGGCATGTGCCAGCAGGTGCTGCATGAGGCTGGAGCGACGCTaGAAACCCTGGTTACACTCGGCGCATCGGAAGGCAGGCTCAGAG +
Preference number: 5 (lower is better)
Translates to: PWACASRCCMRLERR*KPWLHSAHRKAGSE
Trigger: CTCTGAGCCTGCCTTCCGATGCGCCGAGTGTAACCAGGGTTTTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGGCACATGCCCAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGGTCGCAGCCAGTGGTaGCAGAGTTCCCGGAGCCGG +
Preference number: 5 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGGRSQW*QSSRSR
Trigger: CCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACC...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp TCACAACTTCACTGCCGTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTGGTCGCAGCCAGTGGTaGCAGAGTTCCCGGAGCCGG +
Preference number: 5 (lower is better)
Translates to: SQLHCRQQEYLPNQCCWSGRSQW*QSSRSR
Trigger: CCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACC...AGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGACGGCAGTGAAGTTGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CAA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGTCGCAGCCAGTGGTaGCAGAGTTCCCGGAGCCGG +
Preference number: 5 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGGRSQW*QSSRSR
Trigger: CCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACC...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp CTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGTCCGTCCCGGAGCGGTaGGCCGTGCAGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: LSCNFRFLCLGLCSNDDRSVPER*AVQPAQ
Trigger: CTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGGA...CCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS TCA 90 bp AGTTCCCGGAGCCGGCCCAGGGATGCCCGTGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAAAGCTGGTGGGCCACCTCAGGCCTA +
Preference number: 5 (lower is better)
Translates to: SSRSRPRDARGPISS*YWKHLKSWWATSGL
Trigger: TAGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTCCGGGAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS TCA 90 bp TCAAGCCATGAAGGGCCCTGGGAAGGGTCAGTGGCCCCATGTGGCTaGTGTCTCTGGGCACGCCCTCCAATAGCTGTACCACCTCCTCTC +
Preference number: 5 (lower is better)
Translates to: SSHEGPWEGSVAPCG*CLWARPPIAVPPPL
Trigger: GAGAGGAGGTGGTACAGCTATTGGAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGACCCTTCCCAGGGCCCTTCATGGCTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS GCA 90 bp CGGTCGCAGCCAGTGGTTGCAGAGTTCCCGGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTCCTGATACTGGAAGCATCTGAAAAG +
Preference number: 5 (lower is better)
Translates to: RSQPVVAEFPEPAQG*PWPHIFLILEASEK
Trigger: CTTTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS GCA 90 bp CACTCGGCGCATCGGAAGGCAGGCTCAGAGGAATGCGTTAGCAAGTaGTTCGTCAGGTGTGAGCTCTGGCGGAAGCGGCGGTTGCAGAGA +
Preference number: 5 (lower is better)
Translates to: HSAHRKAGSEECVSK*FVRCELWRKRRLQR
Trigger: TCTCTGCAACCGCCGCTTCCGCCAGAGCTCACACCTGACGAAGCACTTGCTAACGCATTCCTCTGAGCCTGCCTTCCGATGCGCCGAGTG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 90 bp GAGCCTGGGATCCTCCTCGCCAACTTCATCCTCCTCCAACTTCACTaGTCCGGGATGCTCTTGTTCCAGGGCATCAGGGACTGGTTCCGC +
Preference number: 5 (lower is better)
Translates to: EPGILLANFILLQLH*SGMLLFQGIRDWFR
Trigger: GCGGAACCAGTCCCTGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAAGTTGGAGGAGGATGAAGTTGGCGAGGAGGATCCCAGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp AAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGTCGCAGCCAGTGGTaGCAGAGTTCCCGGAGCCGG +
Preference number: 5 (lower is better)
Translates to: KLWGRSKVEELGGEICVKGRSQW*QSSRSR
Trigger: CCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACC...CTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp CTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGACTCTGCTCCAATGACGACAGGGGTCGCAGCCAGTGGTaGCAGAGTTCCCGGAGCCGG +
Preference number: 5 (lower is better)
Translates to: LSCNFRFLCLGLCSNDDRGRSQW*QSSRSR
Trigger: CCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACC...CCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CAA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTTCCGTCCCGGAGCGGTaGGCCGTGCAGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGSVPER*AVQPAQ
Trigger: CTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGGA...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS TCA 90 bp GGCACTCCTGAGGAACTTCCTTTTCTTGCTTTGACCCTGTGTGTGTaGTCAGGTGGCGCTGCAGGTGCGCATTGCGCCGGAAACTGCGGC +
Preference number: 5 (lower is better)
Translates to: GTPEELPFLALTLCV*SGGAAGAHCAGNCG
Trigger: GCCGCAGTTTCCGGCGCAATGCGCACCTGCAGCGCCACCTGATCACACACACAGGGTCAAAGCAAGAAAAGGAAGTTCCTCAGGAGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGTGCGCATGTGCAGCTaGAGGATCGAGCTGCGTCCA +
Preference number: 5 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGVRMCS*RIELRP
Trigger: TGGACGCAGCTCGATCCTCAAGCTGCACATGCGCAC...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS GCA 90 bp GGTCTCTGGAATTTTCCTCAAGCCATGAAGGGCCCTGGGAAGGGTTaGTTTCTCGTGGGTCCTGGAGTATCTCCTGGGGCTCTGGGCTCA +
Preference number: 5 (lower is better)
Translates to: GLWNFPQAMKGPGKG*FLVGPGVSPGALGS
Trigger: TGAGCCCAGAGCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 90 bp GCCAGCTCTTGGTCTCTGGAATTTTCCTCAAGCCATGAAGGGCCCTaGGAAGGGTTGCTTTCTCGTGGGTCCTGGAGTATCTCCTGGGGC +
Preference number: 5 (lower is better)
Translates to: ASSWSLEFSSSHEGP*EGLLSRGSWSISWG
Trigger: GCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 90 bp TGGCTGATCAGCTGGGAATTTTGGGTAAAGCAGCGGCCACAGACCTaGCAGGAGAAGGGTCGTTCACGGGTATGGACTCGCCTAGTGTGG +
Preference number: 5 (lower is better)
Translates to: WLISWEFWVKQRPQT*QEKGRSRVWTRLVW
Trigger: CCACACTAGGCGAGTCCATACCCGTGAACGACCCTTCTCCTGCCAGGTCTGTGGCCGCTGCTTTACCCAAAATTCCCAGCTGATCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp GTCAGCAGGAGTACCTCCCCAACCAGTGCTGCTGGTCTCCTGCCCTACAGTTTGCACAGCCGCCAGCTCTaGGTCTCTGGAATTTTCCTC +
Preference number: 5 (lower is better)
Translates to: VSRSTSPTSAAGLLPYSLHSRQL*VSGIFL
Trigger: GAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGTG...CAAACTGTAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGTACTCCTGCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CAA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGCTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGLLPYS*RKRLSC
Trigger: GCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAG...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS TCA 90 bp CTTGCCACACTCAGGGCACTCCTGAGGAACTTCCTTTTCTTGCTTTaGCCCTGTGTGTGTGATCAGGTGGCGCTGCAGGTGCGCATTGCG +
Preference number: 5 (lower is better)
Translates to: LATLRALLRNFLFLL*PCVCDQVALQVRIA
Trigger: CGCAATGCGCACCTGCAGCGCCACCTGATCACACACACAGGGTCAAAGCAAGAAAAGGAAGTTCCTCAGGAGTGCCCTGAGTGTGGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 90 bp TGTCTTGCCTTCTGGATTTGGCGTGAGATTCTTTCCCTGGGCATGTaGCAGCAGGTGCTGCATGAGGCTGGAGCGACGCTGAAAACCCTG +
Preference number: 5 (lower is better)
Translates to: CLAFWIWREILSLGM*QQVLHEAGATLKTL
Trigger: CAGGGTTTTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGGCACATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAGGCAAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 90 bp GGGTCAACAGATGCCGAGCAAGGCCAGCTCGTCTCACAAAGCGTTTaGTGCACTGAGGACAGGCGTGAGGCTTCTCACCCGTATGAATCT +
Preference number: 5 (lower is better)
Translates to: GSTDAEQGQLVSQSV*CTEDRREASHPYES
Trigger: AGATTCATACGGGTGAGAAGCCTCACGCCTGTCCTCAGTGCAGCAAACGCTTTGTGAGACGAGCTGGCCTTGCTCGGCATCTGTTGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 90 bp TCAAGCCATGAAGGGCCCTGGGAAGGGTTGCTTTCTCGTGGGTCCTaGAGTATCTCCTGGGGCTCTGGGCTCATTGGCCAATTTGAACTG +
Preference number: 5 (lower is better)
Translates to: SSHEGPWEGLLSRGS*SISWGSGLIGQFEL
Trigger: CAGTTCAAATTGGCCAATGAGCCCAGAGCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000148062.8
CDS CCA 90 bp AAGCAGCGGCCACAGACCTGGCAGGAGAAGGGTCGTTCACGGGTATaGACTCGCCTAGTGTGGATCATTAGTTGCTCGCTTTGTCGGAAG +
Preference number: 5 (lower is better)
Translates to: KQRPQTWQEKGRSRV*TRLVWIISCSLCRK
Trigger: CTTCCGACAAAGCGAGCAACTAATGATCCACACTAGGCGAGTCCATACCCGTGAACGACCCTTCTCCTGCCAGGTCTGTGGCCGCTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp TCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGCACAGCCGCCAGCTCTaGGTCTCTGGAATTTTCCTC +
Preference number: 5 (lower is better)
Translates to: SREEVNCGGGRRWRNWEEHSRQL*VSGIFL
Trigger: GAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGTG...CTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp AGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGCGCATGTGCAGCTaGAGGATCGAGCTGCGTCCA +
Preference number: 5 (lower is better)
Translates to: RGKLWGRSKVEELGGEICVRMCS*RIELRP
Trigger: TGGACGCAGCTCGATCCTCAAGCTGCACATGCGCAC...ACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS TCA 90 bp TCATTGTCAGGCATTCTGCTTCCAAATCCAGTGGCCCCATGTGGCTaGTGTCTCTGGGCACGCCCTCCAATAGCTGTACCACCTCCTCTC +
Preference number: 5 (lower is better)
Translates to: SLSGILLPNPVAPCG*CLWARPPIAVPPPL
Trigger: GAGAGGAGGTGGTACAGCTATTGGAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGGATTTGGAAGCAGAATGCCTGACAATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117606.2
CDS GCA 90 bp TCAACAGATGCCGAGCAAGGCCAGCTCGTCTCACAAAGCGTTTGCTaGACTGAGGACAGGCGTGAGGCTTCTCACCCGTATGAATCTGCT +
Preference number: 5 (lower is better)
Translates to: STDAEQGQLVSQSVC*TEDRREASHPYESA
Trigger: AGCAGATTCATACGGGTGAGAAGCCTCACGCCTGTCCTCAGTGCAGCAAACGCTTTGTGAGACGAGCTGGCCTTGCTCGGCATCTGTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 90 bp ACCTGGCAGGAGAAGGGTCGTTCACGGGTATGGACTCGCCTAGTGTaGATCATTAGTTGCTCGCTTTGTCGGAAGGCCTTGCCACAGTCA +
Preference number: 5 (lower is better)
Translates to: TWQEKGRSRVWTRLV*IISCSLCRKALPQS
Trigger: TGACTGTGGCAAGGCCTTCCGACAAAGCGAGCAACTAATGATCCACACTAGGCGAGTCCATACCCGTGAACGACCCTTCTCCTGCCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGGTGCGCATGTGCAGCTaGAGGATCGAGCTGCGTCCA +
Preference number: 5 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKVRMCS*RIELRP
Trigger: TGGACGCAGCTCGATCCTCAAGCTGCACATGCGCAC...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS TCA 90 bp TCTGCTTCCAAATCCAAGAGGGTTTGCAGGCCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAGGGACTCCAACACAGCCGCCAGCTC +
Preference number: 5 (lower is better)
Translates to: SASKSKRVCRPSSLL*GILKGEGLQHSRQL
Trigger: GAGCTGGCGGCTGTGTTGGAGTCCCTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTTGGAAGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 90 bp TCTGCTTCCAAATCCAAGAGGGTTTGCAGGCCAAGCTCTCTTCTCTaGGGTATCCTCAAAGGTGAGGGACTCCAGTGGCCCCATGTGGCT +
Preference number: 5 (lower is better)
Translates to: SASKSKRVCRPSSLL*GILKGEGLQWPHVA
Trigger: AGCCACATGGGGCCACTGGAGTCCCTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTTGGAAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115509.8
ENSMUST00000138487.2
CDS CCA 90 bp GAGGACAGCTGCCATCTCTGGCACTTTTGTCTTGCCTTCTGGATTTaGCGTGAGATTCTTTCCCTGGGCATGTGCCAGCAGGTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: EDSCHLWHFCLAFWI*REILSLGMCQQVLH
Trigger: ATGCAGCACCTGCTGGCACATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAGGCAAGACAAAAGTGCCAGAGATGGCAGCTGTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp AGCTGCGTCCAAAAGTCTTCCCACACCACAGACATCGGAAGGATCGAGAGCTTGCACAGCCGCCAGCTCTaGGTCTCTGGAATTTTCCTC +
Preference number: 5 (lower is better)
Translates to: SCVQKSSHTTDIGRIESLHSRQL*VSGIFL
Trigger: GAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGTG...CAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS-3UTR CAA 90 bp ACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGTCTGGCACTTTTGTCTaGCCTTCTGGATTTGGCGTG +
Preference number: 5 (lower is better)
Translates to: TVGEVEGGGTGRRDMCEGSGTFV*PSGFGV
Trigger: CACGCCAAATCCAGAAGGCAAGACAAAAGTGCCAGA...CCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGATCTGGCACTTTTGTCTaGCCTTCTGGATTTGGCGTG +
Preference number: 5 (lower is better)
Translates to: GVKGRGKLWGRSKVEELGSGTFV*PSGFGV
Trigger: CACGCCAAATCCAGAAGGCAAGACAAAAGTGCCAGA...TCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTCACAGCCGCCAGCTCTaGGTCTCTGGAATTTTCCTC +
Preference number: 5 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLHSRQL*VSGIFL
Trigger: GAGGAAAATTCCAGAGACCAAGAGCTGGCGGCTGTG...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GAATCTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTCTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: ESYSCREVHMGQGCWNMGLLPYS*RKRLSC
Trigger: GCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAG...ACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp AACAAATTCTTGGAGTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGCTCCTGCCCTACAGTTaGCGTAAGAGGCTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: NKFLESREEVNCGGGRRWLLPYS*RKRLSC
Trigger: GCAGGAGAGCCTCTTACGCAAACTGTAGGGCAGGAG...CCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GTCAAGGGAAGAGGTAAACTGTGGGGGAGGTCGAAGGTGGAGGAACTGGGAGGACCATCTCTGGCACTTTaGTCTTGCCTTCTGGATTTG +
Preference number: 5 (lower is better)
Translates to: VKGRGKLWGRSKVEELGGPSLAL*SCLLDL
Trigger: CAAATCCAGAAGGCAAGACAAAAGTGCCAGAGATGG...TCCTCCCAGTTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GAGGTCGAAGGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAATTTGGCGAAAGCTTTaGCCACATTGGGCACAGTGG +
Preference number: 5 (lower is better)
Translates to: EVEGGGTGRRDMCEGDTIIWRKL*PHWAQW
Trigger: CCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAAT...TATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACCTTCGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS CCA 90 bp ACAGTTTGCGTAAGAGGCTCTCCTGCAACTTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACGACAGGCCAAGTAGTCACTTTAGGC +
Preference number: 5 (lower is better)
Translates to: TVCVRGSPATSGFSV*DSAPMTTGQVVTLG
Trigger: GCCTAAAGTGACTACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTACGCAAACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS-3UTR CAA 90 bp GGTGGAGGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTTGGCGAAAGCTTTaGCCACATTGGGCACAGTGG +
Preference number: 5 (lower is better)
Translates to: GGGTGRRDMCEGDTIGNLIWRKL*PHWAQW
Trigger: CCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAAT...AAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCCTCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp CTTATTCATGCAGGGAGGTGCACATGGGACAAGGTTGCTGGAACATGGGTGAAGCCATCTCTGGCACTTTaGTCTTGCCTTCTGGATTTG +
Preference number: 5 (lower is better)
Translates to: LIHAGRCTWDKVAGTWVKPSLAL*SCLLDL
Trigger: CAAATCCAGAAGGCAAGACAAAAGTGCCAGAGATGG...CTTCACCCATGTTCCAGCAACCTTGTCCCATGTGCACCTCCCTGCATGAATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS-3UTR CAA 90 bp GGAACTGGGAGGAGAGATATGTGTGAAGGGGACACCATAGGGAATCTTATTCATATTTGGCGAAAGCTTTaGCCACATTGGGCACAGTGG +
Preference number: 5 (lower is better)
Translates to: GTGRRDMCEGDTIGNLIHIWRKL*PHWAQW
Trigger: CCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAAT...ATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
CDS GCA 72 bp TGTACCACCTCCTCTCCGTCCCGGAGCGGTTGGCCGTaGAGCCGGCTCAGCACATGCGGGGGCAGGACACTC +
Preference number: 6 (lower is better)
Translates to: CTTSSPSRSGWP*SRLSTCGGRTL
Trigger: GAGTGTCCTGCCCCCGCATGTGCTGAGCCGGCTGCACGGCCAACCGCTCCGGGACGGAGAGGAGGTGGTACA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
CDS GCA 72 bp TCAGGTGGCGCTGCAGGTGCGCATTGCGCCGGAAACTaGGGCCACAGGTTGGACAGCTATAGGGCCGTTCGC +
Preference number: 6 (lower is better)
Translates to: SGGAAGAHCAGN*GHRLDSYRAVR
Trigger: GCGAACGGCCCTATAGCTGTCCAACCTGTGGCCGCAGTTTCCGGCGCAATGCGCACCTGCAGCGCCACCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp GAAGGGCCCTGGGAAGGGTCAGTGGCCCCATGTGGCTaGTGTCTCTGGGCACGCCCTCCAATAGCTGTACCA +
Preference number: 6 (lower is better)
Translates to: EGPWEGSVAPCG*CLWARPPIAVP
Trigger: TGGTACAGCTATTGGAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGACCCTTCCCAGGGCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS GCA 72 bp CCAGTGGTTGCAGAGTTCCCGGAGCCGGCCCAGGGATaGCCGTGGCCCCATATCTTCCTGATACTGGAAGCA +
Preference number: 6 (lower is better)
Translates to: PVVAEFPEPAQG*PWPHIFLILEA
Trigger: TGCTTCCAGTATCAGGAAGATATGGGGCCACGGGCATCCCTGGGCCGGCTCCGGGAACTCTGCAACCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS CCA 72 bp TTTCCTCAAGCCATGAAGGGCCCTGGGAAGGGTCAGTaGCCCCATGTGGCTGATGTCTCTGGGCACGCCCTC +
Preference number: 6 (lower is better)
Translates to: FPQAMKGPGKGQ*PHVADVSGHAL
Trigger: GAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS CAA 72 bp CCTGTGTGTGTGATCAGGTGGCGCTGCAGGTGCGCATaGCGCCGGAAACTGCGGCCACAGGTTGGACAGCTA +
Preference number: 6 (lower is better)
Translates to: PVCVIRWRCRCA*RRKLRPQVGQL
Trigger: TAGCTGTCCAACCTGTGGCCGCAGTTTCCGGCGCAATGCGCACCTGCAGCGCCACCTGATCACACACACAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp AGCCGGCCCAGGGATGCCCGTGGCCCCATATCTTCCTaGTACTGGAAGCATCTGAAAAGCTGGTGGGCCACC +
Preference number: 6 (lower is better)
Translates to: SRPRDARGPISS*YWKHLKSWWAT
Trigger: GGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCCACGGGCATCCCTGGGCCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS TCA 72 bp TGTGCCAGCAGGTGCTGCATGAGGCTGGAGCGACGCTaGAAACCCTGGTTACACTCGGCGCATCGGAAGGCA +
Preference number: 6 (lower is better)
Translates to: CASRCCMRLERR*KPWLHSAHRKA
Trigger: TGCCTTCCGATGCGCCGAGTGTAACCAGGGTTTTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 72 bp CATCGGAAGGCAGGCTCAGAGGAATGCGTTAGCAAGTaGTTCGTCAGGTGTGAGCTCTGGCGGAAGCGGCGG +
Preference number: 6 (lower is better)
Translates to: HRKAGSEECVSK*FVRCELWRKRR
Trigger: CCGCCGCTTCCGCCAGAGCTCACACCTGACGAAGCACTTGCTAACGCATTCCTCTGAGCCTGCCTTCCGATG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 72 bp GATGCCGAGCAAGGCCAGCTCGTCTCACAAAGCGTTTaGTGCACTGAGGACAGGCGTGAGGCTTCTCACCCG +
Preference number: 6 (lower is better)
Translates to: DAEQGQLVSQSV*CTEDRREASHP
Trigger: CGGGTGAGAAGCCTCACGCCTGTCCTCAGTGCAGCAAACGCTTTGTGAGACGAGCTGGCCTTGCTCGGCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp GAAGGGCCCTGGGAAGGGTTGCTTTCTCGTGGGTCCTaGAGTATCTCCTGGGGCTCTGGGCTCATTGGCCAA +
Preference number: 6 (lower is better)
Translates to: EGPWEGLLSRGS*SISWGSGLIGQ
Trigger: TTGGCCAATGAGCCCAGAGCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000148062.8
CDS TCA 72 bp GAGTATCTCCTGGGGCTCTGGGCTCATTGGCCAATTTaGACTGGGGGCCAGTCTCCACTCCTCAGGCTCAGC +
Preference number: 6 (lower is better)
Translates to: EYLLGLWAHWPI*TGGQSPLLRLS
Trigger: GCTGAGCCTGAGGAGTGGAGACTGGCCCCCAGTTCAAATTGGCCAATGAGCCCAGAGCCCCAGGAGATACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000148062.8
CDS TCA 72 bp CGCCAGCTCTTGGTCTCTGGAATTTTCCTCAAGCCATaGAGGGCCCTGGGAAGGGTCAGTGGCCCCATGTGG +
Preference number: 6 (lower is better)
Translates to: RQLLVSGIFLKP*RALGRVSGPMW
Trigger: CCACATGGGGCCACTGACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118369.2
ENSMUST00000122285.8
CDS GCA 72 bp GCCGAGCAAGGCCAGCTCGTCTCACAAAGCGTTTGCTaGACTGAGGACAGGCGTGAGGCTTCTCACCCGTAT +
Preference number: 6 (lower is better)
Translates to: AEQGQLVSQSVC*TEDRREASHPY
Trigger: ATACGGGTGAGAAGCCTCACGCCTGTCCTCAGTGCAGCAAACGCTTTGTGAGACGAGCTGGCCTTGCTCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CAA 72 bp GGAGTATCTCCTGGGGCTCTGGGCTCATTGGCCAATTaGAACTGGGGGCCAGTCTCCACTCCTCAGGCTCAG +
Preference number: 6 (lower is better)
Translates to: GVSPGALGSLAN*NWGPVSTPQAQ
Trigger: CTGAGCCTGAGGAGTGGAGACTGGCCCCCAGTTCAAATTGGCCAATGAGCCCAGAGCCCCAGGAGATACTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000148062.8
CDS CAA 72 bp GTGGGTCCTGGAGTATCTCCTGGGGCTCTGGGCTCATaGGCCAATTTGAACTGGGGGCCAGTCTCCACTCCT +
Preference number: 6 (lower is better)
Translates to: VGPGVSPGALGS*ANLNWGPVSTP
Trigger: AGGAGTGGAGACTGGCCCCCAGTTCAAATTGGCCAATGAGCCCAGAGCCCCAGGAGATACTCCAGGACCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000148062.8
CDS CAA 90 bp TGGTCTCTGGAATTTTCCTCAAGCCATGAAGGGCCCTGGGAAGGGTaGCTTTCTCGTGGGTCCTGGAGTATCTCCTGGGGCTCTGGGCTC +
Preference number: 6 (lower is better)
Translates to: WSLEFSSSHEGPWEG*LSRGSWSISWGSGL
Trigger: GAGCCCAGAGCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp CGCCAGCTCTTGGTCTCTGGAATTTTCCTCAAGCCATaGAGGGCCCTGGGAAGGGTCTCTACCCCCACAGCT +
Preference number: 6 (lower is better)
Translates to: RQLLVSGIFLKP*RALGRVSTPTA
Trigger: AGCTGTGGGGGTAGAGACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACCAAGAGCTGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123866.8
CDS GCA 72 bp TTCTGGATTTGGCGTGAGATTCTTTCCCTGGGCATGTaGCAGCAGGTGCTGCATGAGGCTGGAGCGACGCTG +
Preference number: 6 (lower is better)
Translates to: FWIWREILSLGM*QQVLHEAGATL
Trigger: CAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGGCACATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 72 bp CGTGGCGGGTTAGGTCTCGCATTTGGCGAAAGCTTTTaGCACATTGGGCACAGTGGTAAGGCCGGAGGCTAC +
Preference number: 6 (lower is better)
Translates to: RGGLGLAFGESF*HIGHSGKAGGY
Trigger: GTAGCCTCCGGCCTTACCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAATGCGAGACCTAACCCGCCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp AGCTGGGAATTTTGGGTAAAGCAGCGGCCACAGACCTaGCAGGAGAAGGGTCGTTCACGGGTATGGACTCGC +
Preference number: 6 (lower is better)
Translates to: SWEFWVKQRPQT*QEKGRSRVWTR
Trigger: GCGAGTCCATACCCGTGAACGACCCTTCTCCTGCCAGGTCTGTGGCCGCTGCTTTACCCAAAATTCCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp CACTCCTCAGGCTCAGCAGGCCTTATGGGTGCTGGCTaGGGTGGAGGTAACTCATTCAGTGGATGTAGGGCT +
Preference number: 6 (lower is better)
Translates to: HSSGSAGLMGAG*GGGNSFSGCRA
Trigger: AGCCCTACATCCACTGAATGAGTTACCTCCACCTCAGCCAGCACCCATAAGGCCTGCTGAGCCTGAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000148062.8
CDS TCA 72 bp CAGGCCAAGCTCTCTTCTCTGAGGTATCCTCAAAGGTaGGGGACTCCAACACAGCCGCCAGCTCTTGGTCTC +
Preference number: 6 (lower is better)
Translates to: QAKLSSLRYPQR*GTPTQPPALGL
Trigger: GAGACCAAGAGCTGGCGGCTGTGTTGGAGTCCCTCACCTTTGAGGATACCTCAGAGAAGAGAGCTTGGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp GGCATTCTGCTTCCAAATCCAGTGGCCCCATGTGGCTaGTGTCTCTGGGCACGCCCTCCAATAGCTGTACCA +
Preference number: 6 (lower is better)
Translates to: GILLPNPVAPCG*CLWARPPIAVP
Trigger: TGGTACAGCTATTGGAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGGATTTGGAAGCAGAATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117606.2
CDS GCA 72 bp ATCCTCCTCGCCAACTTCATCCTCCTCCAACTTCACTaGTCCGGGATGCTCTTGTTCCAGGGCATCAGGGAC +
Preference number: 6 (lower is better)
Translates to: ILLANFILLQLH*SGMLLFQGIRD
Trigger: GTCCCTGATGCCCTGGAACAAGAGCATCCCGGAGCAGTGAAGTTGGAGGAGGATGAAGTTGGCGAGGAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000117606.2
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS GCA 72 bp TTACACTCGGCGCATCGGAAGGCAGGCTCAGAGGAATaGGTTAGCAAGTGCTTCGTCAGGTGTGAGCTCTGG +
Preference number: 6 (lower is better)
Translates to: LHSAHRKAGSEE*VSKCFVRCELW
Trigger: CCAGAGCTCACACCTGACGAAGCACTTGCTAACGCATTCCTCTGAGCCTGCCTTCCGATGCGCCGAGTGTAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp GTCAGGCATTCTGCTTCCAAATCCAGTGGCCCCATGTaGCTGATGTCTCTGGGCACGCCCTCCAATAGCTGT +
Preference number: 6 (lower is better)
Translates to: VRHSASKSSGPM*LMSLGTPSNSC
Trigger: ACAGCTATTGGAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGGATTTGGAAGCAGAATGCCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117606.2
CDS CCA 72 bp GTTCCTCATTGTCAGGCATTCTGCTTCCAAATCCAGTaGCCCCATGTGGCTGATGTCTCTGGGCACGCCCTC +
Preference number: 6 (lower is better)
Translates to: VPHCQAFCFQIQ*PHVADVSGHAL
Trigger: GAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCACTGGATTTGGAAGCAGAATGCCTGACAATGAGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117606.2
CDS CAA 72 bp GAATTTTCCTCAAGCCATGAAGGGCCCTGGGAAGGGTaGCTTTCTCGTGGGTCCTGGAGTATCTCCTGGGGC +
Preference number: 6 (lower is better)
Translates to: EFSSSHEGPWEG*LSRGSWSISWG
Trigger: GCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp CTCAGGGCACTCCTGAGGAACTTCCTTTTCTTGCTTTaGCCCTGTGTGTGTGATCAGGTGGCGCTGCAGGTG +
Preference number: 6 (lower is better)
Translates to: LRALLRNFLFLL*PCVCDQVALQV
Trigger: CACCTGCAGCGCCACCTGATCACACACACAGGGTCAAAGCAAGAAAAGGAAGTTCCTCAGGAGTGCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp CCACAGACCTGGCAGGAGAAGGGTCGTTCACGGGTATaGACTCGCCTAGTGTGGATCATTAGTTGCTCGCTT +
Preference number: 6 (lower is better)
Translates to: PQTWQEKGRSRV*TRLVWIISCSL
Trigger: AAGCGAGCAACTAATGATCCACACTAGGCGAGTCCATACCCGTGAACGACCCTTCTCCTGCCAGGTCTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp TGGTCTCTGGAATTTTCCTCAAGCCATGAAGGGCCCTaGGAAGGGTCTCTACCCCCACAGCTCTGTAACACC +
Preference number: 6 (lower is better)
Translates to: WSLEFSSSHEGP*EGSLPPQLCNT
Trigger: GGTGTTACAGAGCTGTGGGGGTAGAGACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123866.8
CDS GCA 72 bp CTTGAAGGTCTGCCCGCAGTGGGAACAGAGGACAGCTaGCATCTCTGGCACTTTTGTCTTGCCTTCTGGATT +
Preference number: 6 (lower is better)
Translates to: LEGLPAVGTEDS*HLWHFCLAFWI
Trigger: AATCCAGAAGGCAAGACAAAAGTGCCAGAGATGGCAGCTGTCCTCTGTTCCCACTGCGGGCAGACCTTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp TGGTCTCTGGAATTTTCCTCAAGCCATGAAGGGCCCTaGGAAGGGTTGCTTTCTCGTGGGTCCTGGAGTATC +
Preference number: 6 (lower is better)
Translates to: WSLEFSSSHEGP*EGLLSRGSWSI
Trigger: GATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGGCCCTTCATGGCTTGAGGAAAATTCCAGAGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095595.9
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CAA 72 bp CGTATGAATCTGCTGGTGGCTGATCAGCTGGGAATTTaGGGTAAAGCAGCGGCCACAGACCTGGCAGGAGAA +
Preference number: 6 (lower is better)
Translates to: RMNLLVADQLGI*GKAAATDLAGE
Trigger: TTCTCCTGCCAGGTCTGTGGCCGCTGCTTTACCCAAAATTCCCAGCTGATCAGCCACCAGCAGATTCATACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS TCA 72 bp TCTCTGGCACTTTTGTCTTGCCTTCTGGATTTGGCGTaGGATTCTTTCCCTGGGCATGTGCCAGCAGGTGCT +
Preference number: 6 (lower is better)
Translates to: SLALLSCLLDLA*DSFPGHVPAGA
Trigger: AGCACCTGCTGGCACATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAGGCAAGACAAAAGTGCCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 72 bp TCACGGGTATGGACTCGCCTAGTGTGGATCATTAGTTaGTCGCTTTGTCGGAAGGCCTTGCCACAGTCACTA +
Preference number: 6 (lower is better)
Translates to: SRVWTRLVWIIS*SLCRKALPQSL
Trigger: TAGTGACTGTGGCAAGGCCTTCCGACAAAGCGAGCAACTAATGATCCACACTAGGCGAGTCCATACCCGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS CCA 72 bp GTAAGAGGCTCTCCTGCAACTTCAGGTTTCTCTGTCTaGGACTCTGCTCCAATGACGACAGGCCAAGTAGTC +
Preference number: 6 (lower is better)
Translates to: VRGSPATSGFSV*DSAPMTTGQVV
Trigger: GACTACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAGCCTCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS CCA 72 bp GACAGCTGCCATCTCTGGCACTTTTGTCTTGCCTTCTaGATTTGGCGTGAGATTCTTTCCCTGGGCATGTGC +
Preference number: 6 (lower is better)
Translates to: DSCHLWHFCLAF*IWREILSLGMC
Trigger: GCACATGCCCAGGGAAAGAATCTCACGCCAAATCCAGAAGGCAAGACAAAAGTGCCAGAGATGGCAGCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000129227.8
ENSMUST00000148062.8
CDS GCA 72 bp CTCTCCTGCAACTTCAGGTTTCTCTGTCTGGGACTCTaGTCCAATGACGACAGGCCAAGTAGTCACTTTAGG +
Preference number: 6 (lower is better)
Translates to: LSCNFRFLCLGL*SNDDRPSSHFR
Trigger: CCTAAAGTGACTACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAAACCTGAAGTTGCAGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS CAA 72 bp CATTGTCAGGCATTCTGCTTCCAAATCCAAGAGGGTTaGCAGGCCAAGCTCTCTTCTCTGAGGTATCCTCAA +
Preference number: 6 (lower is better)
Translates to: HCQAFCFQIQEG*QAKLSSLRYPQ
Trigger: TTGAGGATACCTCAGAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTTGGAAGCAGAATGCCTGACAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000118369.2
ENSMUST00000120967.8
ENSMUST00000122285.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS CAA 90 bp ACAGGCCAAGTAGTCACTTTAGGCTCTTCAACTTTAAGTTCCTCATaGTCAGGCATTCTGCTTCCAAATCCAAGAGGGTTTGCAGGCCAA +
Preference number: 6 (lower is better)
Translates to: TGQVVTLGSSTLSSS*SGILLPNPRGFAGQ
Trigger: TTGGCCTGCAAACCCTCTTGGATTTGGAAGCAGAATGCCTGACAATGAGGAACTTAAAGTTGAAGAGCCTAAAGTGACTACTTGGCCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000138487.2
ENSMUST00000148062.8
CDS CAA 72 bp GTAGTCACTTTAGGCTCTTCAACTTTAAGTTCCTCATaGTCAGGCATTCTGCTTCCAAATCCAAGAGGGTTT +
Preference number: 6 (lower is better)
Translates to: VVTLGSSTLSSS*SGILLPNPRGF
Trigger: AAACCCTCTTGGATTTGGAAGCAGAATGCCTGACAATGAGGAACTTAAAGTTGAAGAGCCTAAAGTGACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095595.9
ENSMUST00000115509.8
ENSMUST00000120967.8
ENSMUST00000123866.8
ENSMUST00000129227.8
ENSMUST00000138487.2
ENSMUST00000148062.8