RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024734

Ensembl transcript IDs: ENSMUST00000025641.2, ENSMUST00000168708.8

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CAGATCAGACCCACAAAGATCCCGGCCGCCAGGGCTAGGGTGATGGCCAGCAGCTCAGACCCCAGAGGGTaGCAGGCAGAGGCACTACAG +
Preference number: 4 (lower is better)
Translates to: QIRPTKIPAARARVMASSSDPRG*QAEALQ
Trigger: CTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGA...GCTGCTGGCCATCACCCTAGCCCTGGCGGCCGGGATCTTTGTGGGTCTGATCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS-3UTR GCA 90 bp CAGATCAGACCCACAAAGATCCCGGCCGCCAGGGCTAGGGTGATGGCCAGCAGCGCCCAGGAGAAAAATTaGTATCCCAGAGTCACACGT +
Preference number: 4 (lower is better)
Translates to: QIRPTKIPAARARVMASSAQEKN*YPRVTR
Trigger: ACGTGTGACTCTGGGATAGCAATTTTTCTCCTGGGC...GCTGCTGGCCATCACCCTAGCCCTGGCGGCCGGGATCTTTGTGGGTCTGATCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS TCA 90 bp AGCCCACTGCCCCTGGAGAGCTTACAATATCCAGGGCCCGGAGAGTaGTGTTGTGGTGACCAGAGGATCGTCGACGCCCTGCCCAGGAGA +
Preference number: 5 (lower is better)
Translates to: SPLPLESLQYPGPGE*CCGDQRIVDALPRR
Trigger: TCTCCTGGGCAGGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS CCA 90 bp TCAATTCCCAGGGCTCCAGCGTGCCCCATTGGGAGTGAGGTACAGTaGATCCAGCAGGTCCAGGTCCTAGGGATGGCGGAGCAGGAGTTG +
Preference number: 5 (lower is better)
Translates to: SIPRAPACPIGSEVQ*IQQVQVLGMAEQEL
Trigger: CAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS GCA 90 bp TCACCCTTGAAAGGACACCCATCTGACAGAATAGGCCATTGGGGCTaGTCAAAGGGGCTGGTGGTGGGCGTGGCCCAGCACTGGTGTAGC +
Preference number: 5 (lower is better)
Translates to: SPLKGHPSDRIGHWG*SKGLVVGVAQHWCS
Trigger: GCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGGGTGTCCTTTCAAGGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 90 bp AGCCCACTGCCCCTGGAGAGCTTACAATATCCAGGGCCCGGAGAGTaGTGTTGTGGTGACCAGAGGATCGTCGACGCCTTGCTATCCCAG +
Preference number: 5 (lower is better)
Translates to: SPLPLESLQYPGPGE*CCGDQRIVDALLSQ
Trigger: CTGGGATAGCAAGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS GCA 90 bp GGGTACCTACAGAATCCAGCTCAGTCAATTCCCAGGGCTCCAGCGTaGCCCATTGGGAGTGAGGTACAGTGGATCCAGCAGGTCCAGGTC +
Preference number: 5 (lower is better)
Translates to: GYLQNPAQSIPRAPA*PIGSEVQWIQQVQV
Trigger: GACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAGGTACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 90 bp TGGTGGTGGGCGTGGCCCAGCACTGGTGTAGCACCAGAACCAGACTaGGATCAGTTCTCTGCAGGAGTCGGACCTCTACATAGACTGGTT +
Preference number: 5 (lower is better)
Translates to: WWWAWPSTGVAPEPD*DQFSAGVGPLHRLV
Trigger: AACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 90 bp CCGGTTCCCAAATTCATCCAGCACCTTGAATTGGACAGTCTGGTTTaGCCTAGGGAACACCAGCAGCTGCATGCCCCGTACCCCACAGTC +
Preference number: 5 (lower is better)
Translates to: PVPKFIQHLELDSLV*PREHQQLHAPYPTV
Trigger: GACTGTGGGGTACGGGGCATGCAGCTGCTGGTGTTCCCTAGGCCAAACCAGACTGTCCAATTCAAGGTGCTGGATGAATTTGGGAACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 90 bp TGTGGTGGGTGGAGCCAGGTAGGGGTCCGGAGTCACGGTGTGGTCTaGTTTGGGACAGATCAGTGTGACATCTTGTGCTATATCCACACG +
Preference number: 5 (lower is better)
Translates to: CGGWSQVGVRSHGVV*FGTDQCDILCYIHT
Trigger: CGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 90 bp GATCCAGCAGGTCCAGGTCCTAGGGATGGCGGAGCAGGAGTTGGATaGATGAAGCTCTGTTCTGGGTACAACGTAGTGAGACCAGTGTGG +
Preference number: 5 (lower is better)
Translates to: DPAGPGPRDGGAGVG*MKLCSGYNVVRPVW
Trigger: CCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS-3UTR CAA 90 bp TGGCCAGCAGCAGGAGCAGCATTCTTGAGCTGGAGTTCCTGCTGGAACCTGAGGTGCCCAGGAGAAAAATaGCTATCCCAGAGTCACACG +
Preference number: 5 (lower is better)
Translates to: WPAAGAAFLSWSSCWNLRCPGEK*LSQSHT
Trigger: CGTGTGACTCTGGGATAGCAATTTTTCTCCTGGGCA...CCTCAGGTTCCAGCAGGAACTCCAGCTCAAGAATGCTGCTCCTGCTGCTGGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS TCA 90 bp CATCTTGTGCTATATCCACACGGCCATTGGGTAGGACGGCTTGTATaGACACCCTCAGGTGGAACCGCCCATCCTTCTCTAGAACGTGGC +
Preference number: 5 (lower is better)
Translates to: HLVLYPHGHWVGRLV*TPSGGTAHPSLERG
Trigger: GCCACGTTCTAGAGAAGGATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 90 bp CCTGGAGAGCTTACAATATCCAGGGCCCGGAGAGTGATGTTGTGGTaGCCAGAGGATCGTCGACGCCCTGCCCAGGAGAAAAATTGCTAT +
Preference number: 5 (lower is better)
Translates to: PGELTISRARRVMLW*PEDRRRPAQEKNCY
Trigger: ATAGCAATTTTTCTCCTGGGCAGGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS CCA 90 bp TCAAACCGGTTCCCAAATTCATCCAGCACCTTGAATTGGACAGTCTaGTTTGGCCTAGGGAACACCAGCAGCTGCATGCCCCGTACCCCA +
Preference number: 5 (lower is better)
Translates to: SNRFPNSSSTLNWTV*FGLGNTSSCMPRTP
Trigger: TGGGGTACGGGGCATGCAGCTGCTGGTGTTCCCTAGGCCAAACCAGACTGTCCAATTCAAGGTGCTGGATGAATTTGGGAACCGGTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 90 bp GCGAACATGAAGCCGGAAGGCACTGTCCCGAGTGATGGAACCCTGTaGCCCCTTTTGGACATCAATGTCAGACACCAGCTGGTTCTCATA +
Preference number: 5 (lower is better)
Translates to: ANMKPEGTVPSDGTL*PLLDINVRHQLVLI
Trigger: TATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCGGCTTCATGTTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 90 bp CACTACTTGTGTTCTGTAGTTGTCACCCTTGAAAGGACACCCATCTaGCAGAATAGGCCATTGGGGCTGCTCAAAGGGGCTGGTGGTGGG +
Preference number: 5 (lower is better)
Translates to: HYLCSVVVTLERTPI*QNRPLGLLKGAGGG
Trigger: CCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGGGTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 90 bp CTTTGGTACTGTCATAGCAGCAGCCAGCCTGCTGACAGGTTTCCTTaGAACTTCCATTTACCATGCATGGGATGTGCCCGGAGGCTACCT +
Preference number: 5 (lower is better)
Translates to: LWYCHSSSQPADRFP*NFHLPCMGCARRLP
Trigger: AGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp AGGGCTCCAGCGTGCCCCATTGGGAGTGAGGTACAGTaGATCCAGCAGGTCCAGGTCCTAGGGATGGCGGAG +
Preference number: 6 (lower is better)
Translates to: RAPACPIGSEVQ*IQQVQVLGMAE
Trigger: CTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp GTCAATTCCCAGGGCTCCAGCGTGCCCCATTGGGAGTaGGGTACAGTGGATCCAGCAGGTCCAGGTCCTAGG +
Preference number: 6 (lower is better)
Translates to: VNSQGSSVPHWE*GTVDPAGPGPR
Trigger: CCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp TGCCCGGAGGCTACCTGGCACCGCTCCTGGGGCAGATaGGTACCTACAGAATCCAGCTCAGTCAATTCCCAG +
Preference number: 6 (lower is better)
Translates to: CPEATWHRSWGR*VPTESSSVNSQ
Trigger: CTGGGAATTGACTGAGCTGGATTCTGTAGGTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp TGCTCAAAGGGGCTGGTGGTGGGCGTGGCCCAGCACTaGTGTAGCACCAGAACCAGACTGGGATCAGTTCTC +
Preference number: 6 (lower is better)
Translates to: CSKGLVVGVAQH*CSTRTRLGSVL
Trigger: GAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CAA 72 bp CAGCTCAGTCAATTCCCAGGGCTCCAGCGTGCCCCATaGGGAGTGAGGTACAGTGGATCCAGCAGGTCCAGG +
Preference number: 6 (lower is better)
Translates to: QLSQFPGLQRAP*GVRYSGSSRSR
Trigger: CCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp CCCCTGGAGAGCTTACAATATCCAGGGCCCGGAGAGTaGTGTTGTGGTGACCAGAGGATCGTCGACGCCCTG +
Preference number: 6 (lower is better)
Translates to: PLESLQYPGPGE*CCGDQRIVDAL
Trigger: CAGGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS TCA 72 bp CCCCTGGAGAGCTTACAATATCCAGGGCCCGGAGAGTaGTGTTGTGGTGACCAGAGGATCGTCGACGCCTTG +
Preference number: 6 (lower is better)
Translates to: PLESLQYPGPGE*CCGDQRIVDAL
Trigger: CAAGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS GCA 72 bp CAGAATCCAGCTCAGTCAATTCCCAGGGCTCCAGCGTaGCCCATTGGGAGTGAGGTACAGTGGATCCAGCAG +
Preference number: 6 (lower is better)
Translates to: QNPAQSIPRAPA*PIGSEVQWIQQ
Trigger: CTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp GCGTGGCCCAGCACTGGTGTAGCACCAGAACCAGACTaGGATCAGTTCTCTGCAGGAGTCGGACCTCTACAT +
Preference number: 6 (lower is better)
Translates to: AWPSTGVAPEPD*DQFSAGVGPLH
Trigger: ATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp CTTACAATATCCAGGGCCCGGAGAGTGATGTTGTGGTaGCCAGAGGATCGTCGACGCCCTGCCCAGGAGAAA +
Preference number: 6 (lower is better)
Translates to: LTISRARRVMLW*PEDRRRPAQEK
Trigger: TTTCTCCTGGGCAGGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS GCA 72 bp CCTGCTGACAGGTTTCCTTGGAACTTCCATTTACCATaGATGGGATGTGCCCGGAGGCTACCTGGCACCGCT +
Preference number: 6 (lower is better)
Translates to: PADRFPWNFHLP*MGCARRLPGTA
Trigger: AGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp CCATTGGGTAGGACGGCTTGTATGAACACCCTCAGGTaGAACCGCCCATCCTTCTCTAGAACGTGGCAGCCT +
Preference number: 6 (lower is better)
Translates to: PLGRTACMNTLR*NRPSFSRTWQP
Trigger: AGGCTGCCACGTTCTAGAGAAGGATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp CTGACAGGTTTCCTTGGAACTTCCATTTACCATGCATaGGATGTGCCCGGAGGCTACCTGGCACCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: LTGFLGTSIYHA*DVPGGYLAPLL
Trigger: CAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp AAGCCGGAAGGCACTGTCCCGAGTGATGGAACCCTGTaGCCCCTTTTGGACATCAATGTCAGACACCAGCTG +
Preference number: 6 (lower is better)
Translates to: KPEGTVPSDGTL*PLLDINVRHQL
Trigger: CAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp GGCAGGAAATCGCTAGCATTGAAGATGCAGCGAACATaGAGCCGGAAGGCACTGTCCCGAGTGATGGAACCC +
Preference number: 6 (lower is better)
Translates to: GRKSLALKMQRT*SRKALSRVMEP
Trigger: GGGTTCCATCACTCGGGACAGTGCCTTCCGGCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS GCA 72 bp CTGATAGTGGGACCAGAAGGGAAGCGCCTCCCTGTCTaGGGCCACTACTTGTGTTCTGTAGTTGTCACCCTT +
Preference number: 6 (lower is better)
Translates to: LIVGPEGKRLPV*GHYLCSVVVTL
Trigger: AAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CCA 72 bp TGGAGCCAGGTAGGGGTCCGGAGTCACGGTGTGGTCTaGTTTGGGACAGATCAGTGTGACATCTTGTGCTAT +
Preference number: 6 (lower is better)
Translates to: WSQVGVRSHGVV*FGTDQCDILCY
Trigger: ATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp CTATATCCACACGGCCATTGGGTAGGACGGCTTGTATaGACACCCTCAGGTGGAACCGCCCATCCTTCTCTA +
Preference number: 6 (lower is better)
Translates to: LYPHGHWVGRLV*TPSGGTAHPSL
Trigger: TAGAGAAGGATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp GTTCGCCGACCACCTGGATTGCTGTTCCACAGAGGGTaGGAGGGACATGGAAGACCACAAAAGCACTTGTCT +
Preference number: 6 (lower is better)
Translates to: VRRPPGLLFHRG*EGHGRPQKHLS
Trigger: AGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAGGTGGTCGGCGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS GCA 72 bp AGTGATGTTGTGGTGACCAGAGGATCGTCGACGCCCTaGCCAGGAGAAAAATTGCTATCCCAGAGTCACACG +
Preference number: 6 (lower is better)
Translates to: SDVVVTRGSSTP*PGEKLLSQSHT
Trigger: CGTGTGACTCTGGGATAGCAATTTTTCTCCTGGGCAGGGCGTCGACGATCCTCTGGTCACCACAACATCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS CAA 72 bp GGCACTGTCCCGAGTGATGGAACCCTGTGGCCCCTTTaGGACATCAATGTCAGACACCAGCTGGTTCTCATA +
Preference number: 6 (lower is better)
Translates to: GTVPSDGTLWPL*DINVRHQLVLI
Trigger: TATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CAA 90 bp TTGGGACAGATCAGTGTGACATCTTGTGCTATATCCACACGGCCATaGGGTAGGACGGCTTGTATGAACACCCTCAGGTGGAACCGCCCA +
Preference number: 6 (lower is better)
Translates to: LGQISVTSCAISTRP*GRTACMNTLRWNRP
Trigger: TGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CAA 90 bp AAGCCGGAAGGCACTGTCCCGAGTGATGGAACCCTGTGGCCCCTTTaGGACATCAATGTCAGACACCAGCTGGTTCTCATAGATGAGTTG +
Preference number: 6 (lower is better)
Translates to: KPEGTVPSDGTLWPL*DINVRHQLVLIDEL
Trigger: CAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp TCACAAGGGGATAGTCACTCCCCTGATAGTAGGAGCTaGAAGTCTTATCCGTGGCAATCCTCAGCTCCAGCC +
Preference number: 6 (lower is better)
Translates to: SQGDSHSPDSRS*KSYPWQSSAPA
Trigger: GGCTGGAGCTGAGGATTGCCACGGATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS GCA 72 bp CCAGAGGATCGTCGACGCCCTGCCCAGGAGAAAAATTaGTATCCCAGAGTCACACGTAGTAGAGCATGTATC +
Preference number: 6 (lower is better)
Translates to: PEDRRRPAQEKN*YPRVTRSRACI
Trigger: GATACATGCTCTACTACGTGTGACTCTGGGATAGCAATTTTTCTCCTGGGCAGGGCGTCGACGATCCTCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168708.8
CDS CCA 72 bp AAATTCATCCAGCACCTTGAATTGGACAGTCTGGTTTaGCCTAGGGAACACCAGCAGCTGCATGCCCCGTAC +
Preference number: 6 (lower is better)
Translates to: KFIQHLELDSLV*PREHQQLHAPY
Trigger: GTACGGGGCATGCAGCTGCTGGTGTTCCCTAGGCCAAACCAGACTGTCCAATTCAAGGTGCTGGATGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CAA 90 bp CTTTTGGACATCAATGTCAGACACCAGCTGGTTCTCATAGATGAGTaGTTCGCCGACCACCTGGATTGCTGTTCCACAGAGGGTGAGAGG +
Preference number: 6 (lower is better)
Translates to: LLDINVRHQLVLIDE*FADHLDCCSTEGER
Trigger: CCTCTCACCCTCTGTGGAACAGCAATCCAGGTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp GGACATCAATGTCAGACACCAGCTGGTTCTCATAGATaGGTTGTTCGCCGACCACCTGGATTGCTGTTCCAC +
Preference number: 6 (lower is better)
Translates to: GHQCQTPAGSHR*VVRRPPGLLFH
Trigger: GTGGAACAGCAATCCAGGTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS TCA 72 bp TGTTCTGTAGTTGTCACCCTTGAAAGGACACCCATCTaGCAGAATAGGCCATTGGGGCTGCTCAAAGGGGCT +
Preference number: 6 (lower is better)
Translates to: CSVVVTLERTPI*QNRPLGLLKGA
Trigger: AGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGGGTGTCCTTTCAAGGGTGACAACTACAGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CAA 72 bp CTCAAACCGGTTCCCAAATTCATCCAGCACCTTGAATaGGACAGTCTGGTTTGGCCTAGGGAACACCAGCAG +
Preference number: 6 (lower is better)
Translates to: LKPVPKFIQHLE*DSLVWPREHQQ
Trigger: CTGCTGGTGTTCCCTAGGCCAAACCAGACTGTCCAATTCAAGGTGCTGGATGAATTTGGGAACCGGTTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2
CDS CAA 72 bp TTCACCTCAAACCGGTTCCCAAATTCATCCAGCACCTaGAATTGGACAGTCTGGTTTGGCCTAGGGAACACC +
Preference number: 6 (lower is better)
Translates to: FTSNRFPNSSST*NWTVWFGLGNT
Trigger: GGTGTTCCCTAGGCCAAACCAGACTGTCCAATTCAAGGTGCTGGATGAATTTGGGAACCGGTTTGAGGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025641.2