RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNRF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033545

Ensembl transcript IDs: ENSMUST00000095176.12, ENSMUST00000166859.8, ENSMUST00000168428.8, ENSMUST00000171182.8, ENSMUST00000172856.8, ENSMUST00000173506.8, ENSMUST00000173726.8, ENSMUST00000173819.2, ENSMUST00000173922.2, ENSMUST00000174333.8, ENSMUST00000174376.8, ENSMUST00000174454.8

Found 374 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGCGCCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTaGCAGGGCAGCCGAGCTCACACAGCCAAGGTGGGCACACAAAGC +
Preference number: 1 (lower is better)
Translates to: QRRPNQLNHGTQPQH*QGSRAHTAKVGTQS
Trigger: GCTTTGTGTGCCCACCTTGGCTGTGTGAGCTCGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGGCGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp CTCAGCCACAGCACTGCCAGGGCAGCCGAGCTCACACAGCCAAGGTaGGCACACAAAGCCTGTCTCCAGGCCCGGGGGTCAGACAAGGAG +
Preference number: 1 (lower is better)
Translates to: LSHSTARAAELTQPR*AHKACLQARGSDKE
Trigger: CTCCTTGTCTGACCCCCGGGCCTGGAGACAGGCTTTGTGTGCCCACCTTGGCTGTGTGAGCTCGGCTGCCCTGGCAGTGCTGTGGCTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 90 bp GAGAGTTGCCGCTCCATCGCACGGTGGCAGCAGCTTGTGTCCCCCTaGGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGGCAG +
Preference number: 1 (lower is better)
Translates to: ESCRSIARWQQLVSP*DQAGWLGHLVQSRQ
Trigger: CTGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCTGCTGCCACCGTGCGATGGAGCGGCAACTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR GCA 90 bp CTGGGGCGCTGGGCAGAGGGACTAACGTGTGCCCGCCTGCCCACCTaGCATCAGAGCGCTAGGGTCAGGACATGGCTATGCTTGCTTCTG +
Preference number: 1 (lower is better)
Translates to: LGRWAEGLTCARLPT*HQSARVRTWLCLLL
Trigger: CAGAAGCAAGCATAGCCATGTCCTGACCCTAGCGCTCTGATGGCAGGTGGGCAGGCGGGCACACGTTAGTCCCTCTGCCCAGCGCCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp GGAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTaGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTTGGC +
Preference number: 1 (lower is better)
Translates to: GSQTSCRRRHSGPAL*SWDPVPLPHSPSLG
Trigger: GCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR TCA 90 bp AGCCCAGAGCAGGGCCTTTTCCGGGGCCTCAGAGAAGCATGCCCATaGGTCAGCACTTGGCTCTGCACGGAGCAACAGGCAAGCAGAGGG +
Preference number: 1 (lower is better)
Translates to: SPEQGLFRGLREACP*VSTWLCTEQQASRG
Trigger: CCCTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTTCTCTGAGGCCCCGGAAAAGGCCCTGCTCTGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR GCA 90 bp GCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTaGACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTC +
Preference number: 1 (lower is better)
Translates to: AHWKPNIMPAAAFWT*TLELGSSPSASLSL
Trigger: GAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CCA 90 bp CAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTaGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTTGGCATCAGG +
Preference number: 1 (lower is better)
Translates to: QTSCRRRHSGPALWS*DPVPLPHSPSLGIR
Trigger: CCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CCA 90 bp AGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTaGACCTGCACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTC +
Preference number: 1 (lower is better)
Translates to: RQAHWKPNIMPAAAF*TCTLELGSSPSASL
Trigger: GAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CCA 90 bp CAGCTCTGTCCAGTGTCCGAGGAGCCTCCTCCCAGGAACAGGGGCTaGCTGTCCCTGTGTGGGTCGGAAGAAGTCAGTCCCGCTTCATCT +
Preference number: 1 (lower is better)
Translates to: QLCPVSEEPPPRNRG*LSLCGSEEVSPASS
Trigger: AGATGAAGCGGGACTGACTTCTTCCGACCCACACAGGGACAGCCAGCCCCTGTTCCTGGGAGGAGGCTCCTCGGACACTGGACAGAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR GCA 90 bp ACAAAGCCTGTCTCCAGGCCCGGGGGTCAGACAAGGAGATCTCTTTaGGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATAT +
Preference number: 1 (lower is better)
Translates to: TKPVSRPGGQTRRSL*GLGPGPPALLVGLY
Trigger: ATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGCCTGGAGACAGGCTTTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp ACAGAGGGCTTTGGTGTGCCAGGTGGGGGCGGAAGTCACTGGGGATaGGATGAGCACCAGCCTAGAGAGCCTAGAATAGCACCCGGTGTG +
Preference number: 1 (lower is better)
Translates to: TEGFGVPGGGGSHWG*DEHQPREPRIAPGV
Trigger: CACACCGGGTGCTATTCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp CAGCCAACAGAGGGCTTTGGTGTGCCAGGTGGGGGCGGAAGTCACTaGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGAATAGCACCC +
Preference number: 1 (lower is better)
Translates to: QPTEGFGVPGGGGSH*GWDEHQPREPRIAP
Trigger: GGGTGCTATTCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGTTGGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 90 bp CTATGTAGAGCCTCTGCCCAGGAGTGGCTAAGCCATTACAGGTGCTaGGGGAGGGGGTGTGGGCTGAGAGGTGGACAGAGGGAACTGGCA +
Preference number: 1 (lower is better)
Translates to: LCRASAQEWLSHYRC*GRGCGLRGGQRELA
Trigger: TGCCAGTTCCCTCTGTCCACCTCTCAGCCCACACCCCCTCCCTCAGCACCTGTAATGGCTTAGCCACTCCTGGGCAGAGGCTCTACATAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR GCA 90 bp GGGTCCAAATTCAGAGGACATGACAGCCAACAGAGGGCTTTGGTGTaGCAGGTGGGGGCGGAAGTCACTGGGGATGGGATGAGCACCAGC +
Preference number: 1 (lower is better)
Translates to: GSKFRGHDSQQRALV*QVGAEVTGDGMSTS
Trigger: GCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTGGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp TGCCCAGGAGTGGCTAAGCCATTACAGGTGCTGAGGGAGGGGGTGTaGGCTGAGAGGTGGACAGAGGGAACTGGCATTTGCCTTCCACCT +
Preference number: 1 (lower is better)
Translates to: CPGVAKPLQVLREGV*AERWTEGTGICLPP
Trigger: AGGTGGAAGGCAAATGCCAGTTCCCTCTGTCCACCTCTCAGCCCACACCCCCTCCCTCAGCACCTGTAATGGCTTAGCCACTCCTGGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 90 bp CCCTCACACCAGGCACTGGCAATCTGGGTCCAAATTCAGAGGACATaGCAGCCAACAGAGGGCTTTGGTGTGCCAGGTGGGGGCGGAAGT +
Preference number: 1 (lower is better)
Translates to: PSHQALAIWVQIQRT*QPTEGFGVPGGGGS
Trigger: ACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTGGACCCAGATTGCCAGTGCCTGGTGTGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp GCCTGGGACACAAGGACTGAGTGTGGCCTGGACCTCTCAGGCCGGTaGAAGAACCAGGAGTGGAAAGACCTCAGGCCATGTCTTTGCAGT +
Preference number: 1 (lower is better)
Translates to: AWDTRTECGLDLSGR*KNQEWKDLRPCLCS
Trigger: ACTGCAAAGACATGGCCTGAGGTCTTTCCACTCCTGGTTCTTCCACCGGCCTGAGAGGTCCAGGCCACACTCAGTCCTTGTGTCCCAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR CCA 90 bp AGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCTTTaGGGCAGATCCCCGACACAAACTGAACCGAGCCGCATGACCCTG +
Preference number: 1 (lower is better)
Translates to: SDIATRKPAAHVPGL*GRSPTQTEPSRMTL
Trigger: CAGGGTCATGCGGCTCGGTTCAGTTTGTGTCGGGGATCTGCCCCAAAGGCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 90 bp TGTGTATCAGGCAGGCCAGCTCCTCTCCCCCAGCTCCCAGAAACTTaGCTCTTAGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTG +
Preference number: 1 (lower is better)
Translates to: CVSGRPAPLPQLPET*LLAQSLPPSMGSPL
Trigger: CAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCTAAGAGTCAAGTTTCTGGGAGCTGGGGGAGAGGAGCTGGCCTGCCTGATACACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
ENSMUST00000173819.2
3UTR CCA 90 bp GGACCATTTTCTGGAAGTCAGTGCAGAAGGGTGCCCTGTTCTCTCTaGTGTCCCAAGCTCAGCTCTGTCCAGTGTCCGAGGAGCCTCCTC +
Preference number: 1 (lower is better)
Translates to: GPFSGSQCRRVPCSL*CPKLSSVQCPRSLL
Trigger: GAGGAGGCTCCTCGGACACTGGACAGAGCTGAGCTTGGGACACCAGAGAGAACAGGGCACCCTTCTGCACTGACTTCCAGAAAATGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
ENSMUST00000173922.2
3UTR GCA 90 bp GGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGTGCAGAAGGGTaGCCTGTTCTCTCTGGTGTCCCAAGCTCAGCTCTGTCCAGTGTC +
Preference number: 1 (lower is better)
Translates to: GVLREDHFLEVSAEG*PVLSGVPSSALSSV
Trigger: GACACTGGACAGAGCTGAGCTTGGGACACCAGAGAGAACAGGGCACCCTTCTGCACTGACTTCCAGAAAATGGTCCTCCCTGAGGACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
ENSMUST00000173922.2
3UTR GCA 90 bp GGCAGGTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTaGAATTTGCTAACTTGTATGAGGCTGAGTGGCTGGTTCTGGTTC +
Preference number: 1 (lower is better)
Translates to: GRYALLLCPEVSCPA*NLLTCMRLSGWFWF
Trigger: GAACCAGAACCAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATACCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp ACAGCAGTACAAGGGGCAGGTCTGGAAATGGTCATGGTAGAGAGGTaGTGCCATCTCCCTCCAGAGCTTCCCTTAGCTGGCTCTGCAGGA +
Preference number: 1 (lower is better)
Translates to: TAVQGAGLEMVMVER*CHLPPELPLAGSAG
Trigger: TCCTGCAGAGCCAGCTAAGGGAAGCTCTGGAGGGAGATGGCACCACCTCTCTACCATGACCATTTCCAGACCTGCCCCTTGTACTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR GCA 90 bp TCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGTaGAGAAGGGTGCCCTGTTCTCTCTGGTGTCCCAAGCTCAGCTCT +
Preference number: 1 (lower is better)
Translates to: SSTGCPQGGPFSGSQ*RRVPCSLWCPKLSS
Trigger: AGAGCTGAGCTTGGGACACCAGAGAGAACAGGGCACCCTTCTGCACTGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
ENSMUST00000173922.2
3UTR GCA 90 bp TGCCCACCTGCCATCAGAGCGCTAGGGTCAGGACATGGCTATGCTTaGTTCTGTCATGAGTGGTTTTTAGCTGGGCAGCAAACAGCAGGC +
Preference number: 1 (lower is better)
Translates to: CPPAIRALGSGHGYA*FCHEWFLAGQQTAG
Trigger: GCCTGCTGTTTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCAAGCATAGCCATGTCCTGACCCTAGCGCTCTGATGGCAGGTGGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp TCCTGCCCAGCCTGCAATTTGCTAACTTGTATGAGGCTGAGTGGCTaGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCAGAGCAGG +
Preference number: 1 (lower is better)
Translates to: SCPACNLLTCMRLSG*FWFKDCELEEAQSR
Trigger: CCTGCTCTGGGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAGGCTGGGCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp ATGAGTCTATGCAGCTTTTGTGATAGATGCACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAAGCAGCTCCTCCAGGCAGATCACAC +
Preference number: 1 (lower is better)
Translates to: MSLCSFCDRCTGKAA*LSCPPEAAPPGRSH
Trigger: GTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCTGCATAGACTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR GCA 90 bp GCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACACAGGTaGCAGGCAGAAGCTGGAGGTGCTGGGAATAGAACAGTGCCCTTT +
Preference number: 1 (lower is better)
Translates to: ASSAGRIIYRTGRHR*QAEAGGAGNRTVPF
Trigger: AAAGGGCACTGTTCTATTCCCAGCACCTCCAGCTTCTGCCTGGCACCTGTGTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp CCAGCCTGCAATTTGCTAACTTGTATGAGGCTGAGTGGCTGGTTCTaGTTCAAGGACTGTGAGCTGGAAGAAGCCCAGAGCAGGGCCTTT +
Preference number: 1 (lower is better)
Translates to: PACNLLTCMRLSGWF*FKDCELEEAQSRAF
Trigger: AAAGGCCCTGCTCTGGGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAGGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp AAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTaGATAAAAGGTGACACACACAAGTGCCACCTTGGGAAGCCCAGA +
Preference number: 1 (lower is better)
Translates to: KGRVGTNNTGFWRAV*IKGDTHKCHLGKPR
Trigger: TCTGGGCTTCCCAAGGTGGCACTTGTGTGTGTCACCTTTTATCCAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp AGAGCGCTAGGGTCAGGACATGGCTATGCTTGCTTCTGTCATGAGTaGTTTTTAGCTGGGCAGCAAACAGCAGGCTGTAAACATCACAAG +
Preference number: 1 (lower is better)
Translates to: RALGSGHGYACFCHE*FLAGQQTAGCKHHK
Trigger: CTTGTGATGTTTACAGCCTGCTGTTTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCAAGCATAGCCATGTCCTGACCCTAGCGCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 90 bp CTTCCTTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTaGAGGGCTGTCTGGATAAAAGGTGACACACACAAGTGCCACCTT +
Preference number: 1 (lower is better)
Translates to: LPSQKGRVGTNNTGF*RAVWIKGDTHKCHL
Trigger: AAGGTGGCACTTGTGTGTGTCACCTTTTATCCAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 90 bp AACTATATATTTCAGCCACTGTCTCCTAAGGAGGACATTCTCCTATaGGTTTCAATACTATTAAATGGCTTAGATGGGTGGTTTTCAAAA +
Preference number: 1 (lower is better)
Translates to: NYIFQPLSPKEDILL*VSILLNGLDGWFSK
Trigger: TTTTGAAAACCACCCATCTAAGCCATTTAATAGTATTGAAACTCATAGGAGAATGTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGGCCTCCCTGCCTTGGTaGCCACATGCCCACTGGCCT +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPASLPW*PHAHWP
Trigger: AGGCCAGTGGGCATGTGGGCACCAAGGCAGGGAGGC...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCCTGAACTTGCCTCCCTaGCTTGGTGCCCACATGCCC +
Preference number: 2 (lower is better)
Translates to: ARGSDKEISLRAGPWPASLNLPP*LGAHMP
Trigger: GGGCATGTGGGCACCAAGGCAGGGAGGCAAGTTCAG...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGCAGGAGGCCCTGAAATaGAGCTCCTGGAGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPQEALK*SSWSLA
Trigger: AGCCAGGCTCCAGGAGCTGCATTTCAGGGCCTCCTG...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGATGCCCTTTCCCTCCTaGGTCGAGGGTGAGGGGAAG +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPMPFPS*VEGEGK
Trigger: CTTCCCCTCACCCTCGACCCAGGAGGGAAAGGGCAT...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCGTCATGGTAGAGAGGTaGTGCCATCTCCCTCCAGAG +
Preference number: 2 (lower is better)
Translates to: ARGSDKEISLRAGPWPASVMVER*CHLPPE
Trigger: CTCTGGAGGGAGATGGCACCACCTCTCTACCATGAC...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp CATCGCACGGTGGCAGCAGCTTGTGTCCCCCTGAGACCAGGCTGGTaGGCTGGGGCATCTGGTTCAGTCCAGGCAGGCCCATTGGAAGCC +
Preference number: 2 (lower is better)
Translates to: HRTVAAACVPLRPGW*AGASGSVQAGPLEA
Trigger: GGCTTCCAATGGGCCTGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCTGCTGCCACCGTGCGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR-3UTR GCA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCATGGTAGAGAGGTGGTaGCATCTCCCTCCAGAGCTT +
Preference number: 2 (lower is better)
Translates to: ARGSDKEISLRAGPWPASMVERW*HLPPEL
Trigger: AAGCTCTGGAGGGAGATGGCACCACCTCTCTACCAT...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp GGGCCTTTTCCGGGGCCTCAGAGAAGCATGCCCATGAGTCAGCACTaGGCTCTGCACGGAGCAACAGGCAAGCAGAGGGTAGGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: GPFPGPQRSMPMSQH*ALHGATGKQRVGRG
Trigger: CCCCCTCCCTACCCTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTTCTCTGAGGCCCCGGAAAAGGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGAGGGACTAACGTGTaGCCGCCTGCCCACCTGCCA +
Preference number: 2 (lower is better)
Translates to: RAGPWPASSAGRIIYRTGRGTNV*PPAHLP
Trigger: TGGCAGGTGGGCAGGCGGGCACACGTTAGTCCCTCT...CCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGGTGTGGGCTGAGAGGTaGACAGAGGGAACTGGCATT +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPVWAER*TEGTGI
Trigger: AATGCCAGTTCCCTCTGTCCACCTCTCAGCCCACAC...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGGTCATGGTAGAGAGGTaGTGCCATCTCCCTCCAGAG +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPVMVER*CHLPPE
Trigger: CTCTGGAGGGAGATGGCACCACCTCTCTACCATGAC...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp CACAAAGCCTGTCTCCAGGCCCGGGGGTCAGACAAGGAGATCTCTTaGCGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATA +
Preference number: 2 (lower is better)
Translates to: HKACLQARGSDKEIS*RAGPWPASSAGRII
Trigger: TATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGCCTGGAGACAGGCTTTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGCTGTCCCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCAGTCAGCAGGACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 2 (lower is better)
Translates to: GCPFERSRQAGPAGSVSRTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...CCTGCTGACTGACCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGGACAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173922.2
3UTR-3UTR TCA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCTGCATGGAGTTCTCATaGCTAGGTTACTATCGCTCT +
Preference number: 2 (lower is better)
Translates to: ARGSDKEISLRAGPWPASCMEFS*LGYYRS
Trigger: AGAGCGATAGTAACCTAGTCATGAGAACTCCATGCA...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCGCTGGGACTGGGCCCTaGCACAGCAGTACAAGGGGC +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSAGTGP*HSSTRG
Trigger: GCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGC...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GCAAGCAGGCCCAGCAGGGTCAGTCAGCAGGGTGCTCTGGACAAGATCTGTTCAGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: ASRPSRVSQQGALDKICSAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...TGAACAGATCTTGTCCAGAGCACCCTGCTGACTGACCCTGCTGGGCCTGCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR-3UTR GCA 90 bp AGCTTGTGTCCCCCTGAGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGGGATCCAGTCCCTCTaGCTCACTCTCCCTCGCTTG +
Preference number: 2 (lower is better)
Translates to: SLCPPETRLVGWGIWFSPGIQSL*LTLPRL
Trigger: CAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCC...TGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR-3UTR CCA 90 bp GCAAACGGACTGGGCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGATGCAGAGAGCCAACTaGGGCGCTGGGCAGAGGGAC +
Preference number: 2 (lower is better)
Translates to: ANGLGWHLQVPVSSGGCKMQRAN*GAGQRD
Trigger: GTCCCTCTGCCCAGCGCCCCAGTTGGCTCTCTGCAT...CTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGGCAAACGGACTGGGCTaGCATCTCCAGGTGCCTGTA +
Preference number: 2 (lower is better)
Translates to: RAGPWPASSAGRIIYRTGANGLG*HLQVPV
Trigger: TACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC...CCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGATGAGGCTGAGTGGCTaGTTCTGGTTCAAGGACTGT +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPMRLSG*FWFKDC
Trigger: ACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCAT...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACTGGGCCTGCTGGGACTaGGCCCTGACACAGCAGTAC +
Preference number: 2 (lower is better)
Translates to: LGPGPPALLVGLYIERGDWACWD*ALTQQY
Trigger: GTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA...GTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GGACTGAGTGTGGCCTGGACCTCTCAGGCCGGTGGAAGAACCAGGAGTGGAAAGTCAGAACCGAGTCTCTaGGAGGTGAGGGAGGTGAGG +
Preference number: 2 (lower is better)
Translates to: GLSVAWTSQAGGRTRSGKSEPSL*EVREVR
Trigger: CCTCACCTCCCTCACCTCTCAGAGACTCGGTTCTGA...CTTTCCACTCCTGGTTCTTCCACCGGCCTGAGAGGTCCAGGCCACACTCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp TCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCTGGGCAGCAGCTTGTGTCCCCCTaGGACCAGGCTGGTTGGCTG +
Preference number: 2 (lower is better)
Translates to: SPKVERLVMQRANWGAGQQLVSP*DQAGWL
Trigger: CAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCTG...CTGCCCAGCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCAGAGGGACTAACGTGTaGCCGCCTGCCCACCTGCCA +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSRGTNV*PPAHLP
Trigger: TGGCAGGTGGGCAGGCGGGCACACGTTAGTCCCTCT...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp GCAAACGGACTGGGCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGACGGGGAGACACAGGTaGCAGGCAGAAGCTGGAGGT +
Preference number: 2 (lower is better)
Translates to: ANGLGWHLQVPVSSGGCKTGRHR*QAEAGG
Trigger: ACCTCCAGCTTCTGCCTGGCACCTGTGTCTCCCCGT...CTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TGGGCCTGCTGGGACTGGGCCCTGACACAGCAGTACAAGGGGCAGGTCTGGAAAGTGCCCTGTTCTCTCTaGTGTCCCAAGCTCAGCTCT +
Preference number: 2 (lower is better)
Translates to: WACWDWALTQQYKGQVWKVPCSL*CPKLSS
Trigger: AGAGCTGAGCTTGGGACACCAGAGAGAACAGGGCAC...TTTCCAGACCTGCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCTGGGCCTGCTGGGACTaGGCCCTGACACAGCAGTAC +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGWACWD*ALTQQY
Trigger: GTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGCAAGAGCCCAGTTTCTaGCCATTGACAGTGCTTACA +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPQEPSF*PLTVLT
Trigger: TGTAAGCACTGTCAATGGCCAGAAACTGGGCTCTTG...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp CCAACTCCCAGGAACATCCCCCTACTTCCTGGGGACTGCTCTCTGAGGAGATGGGTATGGGCTCACCTTTaGGAGGAGTCGGCAAGCAGG +
Preference number: 2 (lower is better)
Translates to: PTPRNIPLLPGDCSLRRWVWAHL*EESASR
Trigger: CCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATAC...CCATCTCCTCAGAGAGCAGTCCCCAGGAAGTAGGGGGATGTTCCTGGGAGTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR-3UTR TCA 90 bp GTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCCTGGGGACTGCTCTCTaGGGAGATGGCTTCTGTCTT +
Preference number: 2 (lower is better)
Translates to: VQSRQAHWKPNIMPAAAFLGTAL*GDGFCL
Trigger: AAGACAGAAGCCATCTCCTCAGAGAGCAGTCCCCAG...GAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCCAAACTTGTGGGCCTaGTGGGACTGGGCCCTGACA +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGPNLWA*WDWALT
Trigger: TGTCAGGGCCCAGTCCCAGCAGGCCCACAAGTTTGG...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp GCTGTCCCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCAGTCAGCAGGGAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 2 (lower is better)
Translates to: AVPLRGVGKQAQQGQSAGSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...CCCTGCTGACTGACCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGGACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173922.2
3UTR-3UTR CCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCCAGAAGTGCGTGTGTaGGAGGGAGTAGCCTGCTGC +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGPEVRV*EGVACC
Trigger: GCAGCAGGCTACTCCCTCCCACACACGCACTTCTGG...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGTGCTTCTGTCATGAGTaGTTTTTAGCTGGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPCFCHE*FLAGQQ
Trigger: TTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCA...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp GTGTGTATCAGGCAGGCCAGCTCCTCTCCCCCAGCTCCCAGAAACTaGACTCTTAGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTT +
Preference number: 2 (lower is better)
Translates to: VCIRQASSSPPAPRN*TLSPESPAKYGLTF
Trigger: AAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCTAAGAGTCAAGTTTCTGGGAGCTGGGGGAGAGGAGCTGGCCTGCCTGATACACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
ENSMUST00000173819.2
3UTR CAA 90 bp CAATCTGGGTCCAAATTCAGAGGACATGACAGCCAACAGAGGGCTTaGGTGTGCCAGGTGGGGGCGGAAGTCACTGGGGATGGGATGAGC +
Preference number: 2 (lower is better)
Translates to: QSGSKFRGHDSQQRA*VCQVGAEVTGDGMS
Trigger: GCTCATCCCATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTGGACCCAGATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GCAAACGGACTGGGCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGCTGGGGACTGCTCTCTaGGGAGATGGCTTCTGTCTT +
Preference number: 2 (lower is better)
Translates to: ANGLGWHLQVPVSSGGCKLGTAL*GDGFCL
Trigger: AAGACAGAAGCCATCTCCTCAGAGAGCAGTCCCCAG...CTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCAGCTTGTGTCCCCCTaGGACCAGGCTGGTTGGCTG +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEAQLVSP*DQAGWL
Trigger: CAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCTG...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp GGTGGGGGCGGAAGTCACTGGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGACCAGTTTCTGGCCATTaGCAGTGCTTACAGTTCAGG +
Preference number: 2 (lower is better)
Translates to: GGGGSHWGWDEHQPREPRPVSGH*QCLQFR
Trigger: CCTGAACTGTAAGCACTGTCAATGGCCAGAAACTGG...TCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp TGCCCAGGAGTGGCTAAGCCATTACAGGTGCTGAGGGAGGGGGTGTGGGCTGAGCCAATGTCCCTGATTTaGCTGACACCAGCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: CPGVAKPLQVLREGVWAEPMSLI*LTPAAV
Trigger: AACAGCTGCTGGTGTCAGGCAAATCAGGGACATTGG...CTCAGCCCACACCCCCTCCCTCAGCACCTGTAATGGCTTAGCCACTCCTGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp GCAAACGGACTGGGCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGGTCAGTGCAGAAGGGTaGCCTGTTCTCTCTGGTGTC +
Preference number: 2 (lower is better)
Translates to: ANGLGWHLQVPVSSGGCKVSAEG*PVLSGV
Trigger: GACACCAGAGAGAACAGGGCACCCTTCTGCACTGAC...CTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTCTGAACTTGCCTCCCTaGCTTGGTGCCCACATGCCC +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTLNLPP*LGAHMP
Trigger: GGGCATGTGGGCACCAAGGCAGGGAGGCAAGTTCAG...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCACCGGCGGCGGCATTCTaGACCTGCACTCTGGAGCTG +
Preference number: 2 (lower is better)
Translates to: PGSRVRGRIEVNSFFSHPPAAAF*TCTLEL
Trigger: CAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGG...TGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCCCTCACCCTCGACCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GGTGGGGGCGGAAGTCACTGGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGAGGGAGGACCATTTTCTaGAAGTCAGTGCAGAAGGGT +
Preference number: 2 (lower is better)
Translates to: GGGGSHWGWDEHQPREPRGRTIF*KSVQKG
Trigger: ACCCTTCTGCACTGACTTCCAGAAAATGGTCCTCCC...TCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCGCCCCAACCAACTCAACCACGGGACTCAGCCACAGCACTGCCAGGGCAGCCGAAATCACAGGGGCCTTaGAAAAATGTCCAGGCATTT +
Preference number: 2 (lower is better)
Translates to: PPQPTQPRDSATALPGQPKSQGP*KNVQAF
Trigger: AAATGCCTGGACATTTTTCCAAGGCCCCTGTGATTT...CGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGGGCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AAGCATGCCCATGAGTCAGCACTTGGCTCTGCACGGAGCAACAGGCAAGCAGAGGCAAACGGACTGGGCTaGCATCTCCAGGTGCCTGTA +
Preference number: 2 (lower is better)
Translates to: KHAHESALGSARSNRQAEANGLG*HLQVPV
Trigger: TACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC...CTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCTTTGGTGTGCCAGGTaGGGGCGGAAGTCACTGGGG +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEALWCAR*GRKSLG
Trigger: CCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAG...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp CACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTaGGCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCT +
Preference number: 2 (lower is better)
Translates to: HSGAGIQSLCLTLPR*ASGFEVRVERANVP
Trigger: AGGGACATTGGCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR-3UTR TCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTGTATGGGCTCACCTTTaGGAGGAGTCGGCAAGCAGG +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTVWAHL*EESASR
Trigger: CCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATAC...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp AAGAAAATGCCCTTTCCCTCCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAAGCGGCATTCTGGACCTaGACTCTGGAGCTGGGATCC +
Preference number: 2 (lower is better)
Translates to: KKMPFPSWVEGEGKDRGQAAFWT*TLELGS
Trigger: GGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGC...TTGACCTCTATCCTTCCCCTCACCCTCGACCCAGGAGGGAAAGGGCATTTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp GGTGGGGGCGGAAGTCACTGGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGATTTTCTGGAAGTCAGTaGAGAAGGGTGCCCTGTTCT +
Preference number: 2 (lower is better)
Translates to: GGGGSHWGWDEHQPREPRFSGSQ*RRVPCS
Trigger: AGAACAGGGCACCCTTCTGCACTGACTTCCAGAAAA...TCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACTGTCCCCACTTCACATaGAAGGGATCGAGTTCACGG +
Preference number: 2 (lower is better)
Translates to: LGPGPPALLVGLYIERGDCPHFT*KGSSSR
Trigger: CCGTGAACTCGATCCCTTGCATGTGAAGTGGGGACA...GTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTGCTGTAGAGCCTGGCTaGGGGCGCCTCTGCTCCAGC +
Preference number: 2 (lower is better)
Translates to: EVNSFFSHPLGVLREDHFAVEPG*GRLCSS
Trigger: GCTGGAGCAGAGGCGCCCCCAGCCAGGCTCTACAGC...AAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GTGCCTGGGACACAAGGACTGAGTGTGGCCTGGACCTCTCAGGCCGGTGGAAGAGCCATGTCTTTGCAGTaGACAATGTCTGTTCCACAG +
Preference number: 2 (lower is better)
Translates to: VPGTQGLSVAWTSQAGGRAMSLQ*TMSVPQ
Trigger: CTGTGGAACAGACATTGTCCACTGCAAAGACATGGC...TCTTCCACCGGCCTGAGAGGTCCAGGCCACACTCAGTCCTTGTGTCCCAGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCGACCTCTCAGGCCGGTaGAAGAACCAGGAGTGGAAA +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSDLSGR*KNQEWK
Trigger: TTTCCACTCCTGGTTCTTCCACCGGCCTGAGAGGTC...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp CCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGGGATGTGGGATCAAGTaGGAAGGGGCTGATGGTTTT +
Preference number: 2 (lower is better)
Translates to: PIGSQTSCRRRHSGPALWGCGIK*EGADGF
Trigger: AAAACCATCAGCCCCTTCCCACTTGATCCCACATCC...CCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTCTTCTCTCATCCACTaGGTGTCCTCAGGGAGGACC +
Preference number: 2 (lower is better)
Translates to: VCTAALPRGFLPSLQFANSSLIH*VSSGRT
Trigger: GGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGA...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCGAAAAGCAAACGGACTaGGCTGGCATCTCCAGGTGC +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGEKQTD*AGISRC
Trigger: GCACCTGGAGATGCCAGCCCAGTCCGTTTGCTTTTC...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACGAAAAGCAAACGGACTaGGCTGGCATCTCCAGGTGC +
Preference number: 2 (lower is better)
Translates to: VCTAALPRGFLPSLQFANEKQTD*AGISRC
Trigger: GCACCTGGAGATGCCAGCCCAGTCCGTTTGCTTTTC...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AAGCATGCCCATGAGTCAGCACTTGGCTCTGCACGGAGCAACAGGCAAGCAGAGGAAAAGCAAACGGACTaGGCTGGCATCTCCAGGTGC +
Preference number: 2 (lower is better)
Translates to: KHAHESALGSARSNRQAEEKQTD*AGISRC
Trigger: GCACCTGGAGATGCCAGCCCAGTCCGTTTGCTTTTC...CTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCTCAAGGACTGTGAGCTaGAAGAAGCCCAGAGCAGGG +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSSRTVS*KKPRAG
Trigger: CCCTGCTCTGGGCTTCTTCCAGCTCACAGTCCTTGA...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTGCAGCTCCTGGAGCCTaGCTAGAAGACAGGCAGGTA +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTAAPGA*LEDRQV
Trigger: TACCTGCCTGTCTTCTAGCCAGGCTCCAGGAGCTGC...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCTGCCCACATGCCCACTaGCCTCCAACACATGTCCTT +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGCPHAH*PPTHVL
Trigger: AAGGACATGTGTTGGAGGCCAGTGGGCATGTGGGCA...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp AAACGAATCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCACCTTCTGCCTCTCCTaGGGGGAAGGAGCCTGGTTC +
Preference number: 2 (lower is better)
Translates to: KRIPKGRKVSDAESQLGRTFCLS*GEGAWF
Trigger: GAACCAGGCTCCTTCCCCTCAGGAGAGGCAGAAGGT...GCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGATTCGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTCTGGTTCAAGGACTGTaGGCTGGAAGAAGCCCAGAG +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTLVQGL*AGRSPE
Trigger: CTCTGGGCTTCTTCCAGCTCACAGTCCTTGAACCAG...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCGCACTCTTAGTTCTCTaGACTTGCCTCCCTGCCTTG +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSALLVL*TCLPAL
Trigger: CAAGGCAGGGAGGCAAGTTCAGAGAACTAAGAGTGC...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp TTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTCCAATGTCCCTGATTTaGCTGACACCAGCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: FSPGRPIGSQTSCRRRHSPMSLI*LTPAAV
Trigger: AACAGCTGCTGGTGTCAGGCAAATCAGGGACATTGG...AGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR-3UTR GCA 90 bp TGGGCCTGCTGGGACTGGGCCCTGACACAGCAGTACAAGGGGCAGGTCTGGAAAGGACATGGCTATGCTTaGTTCTGTCATGAGTGGTTT +
Preference number: 2 (lower is better)
Translates to: WACWDWALTQQYKGQVWKGHGYA*FCHEWF
Trigger: AAACCACTCATGACAGAAGCAAGCATAGCCATGTCC...TTTCCAGACCTGCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACCCTGAAAATGGGGGTTaGAGCACACAGTCCTTTAGC +
Preference number: 2 (lower is better)
Translates to: LGPGPPALLVGLYIERGDPENGG*STQSFS
Trigger: GCTAAAGGACTGTGTGCTGCAACCCCCATTTTCAGG...GTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCATGGTAGAGAGGTGGTaGCATCTCCCTCCAGAGCTT +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGMVERW*HLPPEL
Trigger: AAGCTCTGGAGGGAGATGGCACCACCTCTCTACCAT...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CCAACTCCCAGGAACATCCCCCTACTTCCTGGGGACTGCTCTCTGAGGAGATGGCTTCTGCTTTCTCCTTaGTGGGGTGTGTATCAGGCA +
Preference number: 2 (lower is better)
Translates to: PTPRNIPLLPGDCSLRRWLLLSP*WGVYQA
Trigger: TGCCTGATACACACCCCACCAAGGAGAAAGCAGAAG...CCATCTCCTCAGAGAGCAGTCCCCAGGAAGTAGGGGGATGTTCCTGGGAGTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR-3UTR CCA 90 bp CGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGTGCTTCTGTCATGAGTaGTTTTTAGCTGGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: RAGPWPASSAGRIIYRTGCFCHE*FLAGQQ
Trigger: TTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCA...CCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GCAAACGGACTGGGCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGGCTAGGGTCAGGACATaGCTATGCTTGCTTCTGTCA +
Preference number: 2 (lower is better)
Translates to: ANGLGWHLQVPVSSGGCKARVRT*LCLLLS
Trigger: TGACAGAAGCAAGCATAGCCATGTCCTGACCCTAGC...CTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGATGCAGAGAGCCAACTaGGGCGCTGGGCAGAGGGAC +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLMQRAN*GAGQRD
Trigger: GTCCCTCTGCCCAGCGCCCCAGTTGGCTCTCTGCAT...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCTGGGCAGGTGGACAGAGGGAACTaGCATTTGCCTTCCACCTTG +
Preference number: 2 (lower is better)
Translates to: SPKVERLVMQRANWGAGQVDRGN*HLPSTL
Trigger: CAAGGTGGAAGGCAAATGCCAGTTCCCTCTGTCCAC...CTGCCCAGCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTGTGTGGGCTGAGAGGTaGACAGAGGGAACTGGCATT +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTVWAER*TEGTGI
Trigger: AATGCCAGTTCCCTCTGTCCACCTCTCAGCCCACAC...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCGCAGCTCCTGGAGCCTaGCTAGAAGACAGGCAGGTA +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEAAAPGA*LEDRQV
Trigger: TACCTGCCTGTCTTCTAGCCAGGCTCCAGGAGCTGC...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCTGAAATGCAGCTCCTaGAGCCTGGCTAGAAGACAG +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGLKCSS*SLARRQ
Trigger: CTGTCTTCTAGCCAGGCTCCAGGAGCTGCATTTCAG...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp CCTCGCTTGGCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCTGATGTATGGGCTCACCTTTaGGAGGAGTCGGCAAGCAGG +
Preference number: 2 (lower is better)
Translates to: PRLASGFEVRVERANVPDVWAHL*EESASR
Trigger: CCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATAC...ATCAGGGACATTGGCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp GACACAAGGACTGAGTGTGGCCTGGACCTCTCAGGCCGGTGGAAGAACCAGGAGTGCATGGAGTTCTCATaGCTAGGTTACTATCGCTCT +
Preference number: 2 (lower is better)
Translates to: DTRTECGLDLSGRWKNQECMEFS*LGYYRS
Trigger: AGAGCGATAGTAACCTAGTCATGAGAACTCCATGCA...CTCCTGGTTCTTCCACCGGCCTGAGAGGTCCAGGCCACACTCAGTCCTTGTGTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCTTGGCATCAGGTTTTaGGGTGAGGGTAGAAAGAGC +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGLGIRF*GEGRKS
Trigger: GCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAG...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCTGGTTCAAGGACTGTaGGCTGGAAGAAGCCCAGAG +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEALVQGL*AGRSPE
Trigger: CTCTGGGCTTCTTCCAGCTCACAGTCCTTGAACCAG...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp TGTGTCCCCCTGAGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGGCAAATAAAATAAACCTTTaGGAGGAGTCGGCAAGCAGG +
Preference number: 2 (lower is better)
Translates to: CVPLRPGWLAGASGSVQANKINL*EESASR
Trigger: CCTGCTTGCCGACTCCTCTCAAAGGTTTATTTTATT...TGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173506.8
3UTR-3UTR GCA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACCCTGAAAATGGGGGTTaGAGCACACAGTCCTTTAGC +
Preference number: 2 (lower is better)
Translates to: VCTAALPRGFLPSLQFANPENGG*STQSFS
Trigger: GCTAAAGGACTGTGTGCTGCAACCCCCATTTTCAGG...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGCCAAACTTGTGGGCCTaGTGGGACTGGGCCCTGACA +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLPNLWA*WDWALT
Trigger: TGTCAGGGCCCAGTCCCAGCAGGCCCACAAGTTTGG...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCTTCTGCTTTCTCCTTaGTGGGGTGTGTATCAGGCA +
Preference number: 2 (lower is better)
Translates to: SALCSDIATRKPAAHVPGLLLSP*WGVYQA
Trigger: TGCCTGATACACACCCCACCAAGGAGAAAGCAGAAG...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCGGGAGGACCATTTTCTaGAAGTCAGTGCAGAAGGGT +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSGRTIF*KSVQKG
Trigger: ACCCTTCTGCACTGACTTCCAGAAAATGGTCCTCCC...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGAGCCAACTGGGGCGCTaGGCAGAGGGACTAACGTGT +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLSQLGR*AEGLTC
Trigger: ACACGTTAGTCCCTCTGCCCAGCGCCCCAGTTGGCT...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTCTTGCCTCCCTGCCTTaGTGCCCACATGCCCACTGG +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRILASLP*CPHAHW
Trigger: CCAGTGGGCATGTGGGCACCAAGGCAGGGAGGCAAG...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp TGGGCCTGCTGGGACTGGGCCCTGACACAGCAGTACAAGGGGCAGGTCTGGAAAAACAACACAGGATTCTaGAGGGCTGTCTGGATAAAA +
Preference number: 2 (lower is better)
Translates to: WACWDWALTQQYKGQVWKNNTGF*RAVWIK
Trigger: TTTTATCCAGACAGCCCTCCAGAATCCTGTGTTGTT...TTTCCAGACCTGCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp CAAAACAAAAGAGAGAGAACACCCAACACAGTCCTCAAAGGCACAGGCAGGGTGAGTAGCCTGCTGCTGTaGCACTGTGCCTGGGACACA +
Preference number: 2 (lower is better)
Translates to: QNKRERTPNTVLKGTGRVSSLLL*HCAWDT
Trigger: TGTGTCCCAGGCACAGTGTCACAGCAGCAGGCTACT...CACCCTGCCTGTGCCTTTGAGGACTGTGTTGGGTGTTCTCTCTCTTTTGTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp CTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACGAGATGACAGAAGACTaGCAATCACTCCATGATGCT +
Preference number: 2 (lower is better)
Translates to: LGPGPPALLVGLYIERGDEMTED*QSLHDA
Trigger: AGCATCATGGAGTGATTGTCAGTCTTCTGTCATCTC...GTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GCAAACGGACTGGGCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGGAGATGACAGAAGACTaGCAATCACTCCATGATGCT +
Preference number: 2 (lower is better)
Translates to: ANGLGWHLQVPVSSGGCKEMTED*QSLHDA
Trigger: AGCATCATGGAGTGATTGTCAGTCTTCTGTCATCTC...CTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGCCCAGTCCGTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACCAAATTCAGAGGACATaGCAGCCAACAGAGGGCTTT +
Preference number: 2 (lower is better)
Translates to: VCTAALPRGFLPSLQFANQIQRT*QPTEGF
Trigger: AAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTG...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGCAAGTCCTCCCAAGTTaGGTTCCACTGGGCAGGGCT +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLQVLPS*VPLGRA
Trigger: AGCCCTGCCCAGTGGAACTCAACTTGGGAGGACTTG...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTCCTGAAAATGGGGGTTaGAGCACACAGTCCTTTAGC +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTPENGG*STQSFS
Trigger: GCTAAAGGACTGTGTGCTGCAACCCCCATTTTCAGG...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp AAGAAAATGCCCTTTCCCTCCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAAGGATCCCCAAGCCTTTaGATGTGGGATCAAGTGGGA +
Preference number: 2 (lower is better)
Translates to: KKMPFPSWVEGEGKDRGQGSPSL*MWDQVG
Trigger: TCCCACTTGATCCCACATCCAAAGGCTTGGGGATCC...TTGACCTCTATCCTTCCCCTCACCCTCGACCCAGGAGGGAAAGGGCATTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp CATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGCCTCTGCCCAGGAGTaGCTAAGCCATTACAGGTGC +
Preference number: 2 (lower is better)
Translates to: HSSLIHWVSSGRTIFWKSASAQE*LSHYRC
Trigger: GCACCTGTAATGGCTTAGCCACTCCTGGGCAGAGGC...TGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGGCCTCTGCCCAGGAGTaGCTAAGCCATTACAGGTGC +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLASAQE*LSHYRC
Trigger: GCACCTGTAATGGCTTAGCCACTCCTGGGCAGAGGC...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCTTGTATGAGGCTGAGTaGCTGGTTCTGGTTCAAGGA +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSLYEAE*LVLVQG
Trigger: TCCTTGAACCAGAACCAGCCACTCAGCCTCATACAA...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp AGAAGTAAAGTGCCCCAGTACAGACAAGAGCCCAGTTTCTGGCCATaGACAGTGCTTACAGTTCAGGTCCTGAGGCGTCTGACACTCAGG +
Preference number: 2 (lower is better)
Translates to: RSKVPQYRQEPSFWP*TVLTVQVLRRLTLR
Trigger: CCTGAGTGTCAGACGCCTCAGGACCTGAACTGTAAGCACTGTCAATGGCCAGAAACTGGGCTCTTGTCTGTACTGGGGCACTTTACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp GAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTTCAGAACCGAGTCTCTaGGAGGTGAGGGAGGTGAGG +
Preference number: 2 (lower is better)
Translates to: EVNSFFSHPLGVLREDHFSEPSL*EVREVR
Trigger: CCTCACCTCCCTCACCTCTCAGAGACTCGGTTCTGA...AAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCCAGTTTCTGGCCATTaGCAGTGCTTACAGTTCAGG +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEAPVSGH*QCLQFR
Trigger: CCTGAACTGTAAGCACTGTCAATGGCCAGAAACTGG...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CCATTTTCTGGAAGTCAGTGCAGAAGGGTGCCCTGTTCTCTCTGGTGTCCCAAGCTGTCTTTCTGCTTCTaGTTTCTCCTTGGTGGGGTG +
Preference number: 2 (lower is better)
Translates to: PFSGSQCRRVPCSLWCPKLSFCF*FLLGGV
Trigger: CACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAG...CTTGGGACACCAGAGAGAACAGGGCACCCTTCTGCACTGACTTCCAGAAAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCATGAGGCTGAGTGGCTaGTTCTGGTTCAAGGACTGT +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEAMRLSG*FWFKDC
Trigger: ACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCAT...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp GGGGACCTTCTGCCTCTCCTGAGGGGAAGGAGCCTGGTTCTATCTTaGCATGGAGTTCTCATGACTAGGTTACTATCGCTCTTTCATGCT +
Preference number: 2 (lower is better)
Translates to: GDLLPLLRGRSLVLS*HGVLMTRLLSLFHA
Trigger: AGCATGAAAGAGCGATAGTAACCTAGTCATGAGAACTCCATGCAAAGATAGAACCAGGCTCCTTCCCCTCAGGAGAGGCAGAAGGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGGCACTCTTAGTTCTCTaGACTTGCCTCCCTGCCTTG +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLALLVL*TCLPAL
Trigger: CAAGGCAGGGAGGCAAGTTCAGAGAACTAAGAGTGC...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCTGTCTGGATAAAAGGTaGCACACACAAGTGCCACCT +
Preference number: 2 (lower is better)
Translates to: CMRLSGWFWFKDCELEEACLDKR*HTQVPP
Trigger: AGGTGGCACTTGTGTGTGTCACCTTTTATCCAGACA...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTTGCCCACATGCCCACTaGCCTCCAACACATGTCCTT +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRICPHAH*PPTHVL
Trigger: AAGGACATGTGTTGGAGGCCAGTGGGCATGTGGGCA...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR TCA 90 bp AGGCCCAGCAGGGTCAGTCAGCAGGGTGCTCTGGACAAGATCTGTTCACTTCAAAATAAAATAAACCTTTaGGAGGAGTCGGCAAGCAGG +
Preference number: 2 (lower is better)
Translates to: RPSRVSQQGALDKICSLQNKINL*EESASR
Trigger: CCTGCTTGCCGACTCCTCTCAAAGGTTTATTTTATT...TTGAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGACTGACCCTGCTGGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
3UTR-3UTR TCA 90 bp TCCCTCTGCCTCACTCTCCCTCGCTTGGCATCAGGTTTTGAGGTGAGGGTAGAAAATAAAATAAACCTTTaGGAGGAGTCGGCAAGCAGG +
Preference number: 2 (lower is better)
Translates to: SLCLTLPRLASGFEVRVENKINL*EESASR
Trigger: CCTGCTTGCCGACTCCTCTCAAAGGTTTATTTTATT...TTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000173506.8
ENSMUST00000174454.8
3UTR-3UTR GCA 90 bp CATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCACTGTCTTTCTGCTTCTaGTTTCTCCTTGGTGGGGTG +
Preference number: 2 (lower is better)
Translates to: HSSLIHWVSSGRTIFWKSLSFCF*FLLGGV
Trigger: CACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAG...TGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTAAATCACAGGGGCCTTaGAAAAATGTCCAGGCATTT +
Preference number: 2 (lower is better)
Translates to: YALLLCPEVSCPACNLLTKSQGP*KNVQAF
Trigger: AAATGCCTGGACATTTTTCCAAGGCCCCTGTGATTT...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCGATGTCATGTGTGAATaGCTAAAATATTTCCGTGCG +
Preference number: 2 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSDVMCE*LKYFRA
Trigger: CGCACGGAAATATTTTAGCCATTCACACATGACATC...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR TCA 90 bp CCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCAGAGATGACAGAAGACTaGCAATCACTCCATGATGCT +
Preference number: 2 (lower is better)
Translates to: PGSRVRGRIEVNSFFSHPEMTED*QSLHDA
Trigger: AGCATCATGGAGTGATTGTCAGTCTTCTGTCATCTC...TGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCCCTCACCCTCGACCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACGCCTCCCTGCCTTGGTaGCCACATGCCCACTGGCCT +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDASLPW*PHAHWP
Trigger: AGGCCAGTGGGCATGTGGGCACCAAGGCAGGGAGGC...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTCAGGCACTGGCAATCTaGGTCCAAATTCAGAGGACA +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRIQALAI*VQIQRT
Trigger: TGTCCTCTGAATTTGGACCCAGATTGCCAGTGCCTG...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 2 (lower is better)
Translates to: EVNSFFSHPLGVLREDHFVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...AAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173922.2
3UTR-3UTR GCA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGGGACATGGCTATGCTTaGTTCTGTCATGAGTGGTTT +
Preference number: 2 (lower is better)
Translates to: FSERQSRNEQHRILEGCLGHGYA*FCHEWF
Trigger: AAACCACTCATGACAGAAGCAAGCATAGCCATGTCC...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACCAGAGGGCTTTGGTGTaGCAGGTGGGGGCGGAAGTC +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDQRALV*QVGAEV
Trigger: GACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTG...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACCTGAGGGAGGGGGTGTaGGCTGAGAGGTGGACAGAG +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDLREGV*AERWTE
Trigger: CTCTGTCCACCTCTCAGCCCACACCCCCTCCCTCAG...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACGGGGGCGGAAGTCACTaGGGATGGGATGAGCACCAG +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDGGGSH*GWDEHQ
Trigger: CTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCC...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 90 bp GCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCTGATTaGCCTGACACCAGCAGCTGTTCTGGGCATTTACTTGGAATAAAT +
Preference number: 2 (lower is better)
Translates to: ASGFEVRVERANVPD*PDTSSCSGHLLGIN
Trigger: ATTTATTCCAAGTAAATGCCCAGAACAGCTGCTGGTGTCAGGCAAATCAGGGACATTGGCTCTTTCTACCCTCACCTCAAAACCTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
ENSMUST00000174454.8
3UTR-3UTR GCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTGTTTCCTGCCCAGCCTaGAATTTGCTAACTTGTATG +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRIVSCPA*NLLTCM
Trigger: CATACAAGTTAGCAAATTGCAGGCTGGGCAGGAAAC...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR GCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACCTGAACTTGCCTCCCTaGCTTGGTGCCCACATGCCC +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDLNLPP*LGAHMP
Trigger: GGGCATGTGGGCACCAAGGCAGGGAGGCAAGTTCAG...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR GCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACACGGGGAGACACAGGTaGCAGGCAGAAGCTGGAGGT +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDTGRHR*QAEAGG
Trigger: ACCTCCAGCTTCTGCCTGGCACCTGTGTCTCCCCGT...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTTGCTTCTGTCATGAGTaGTTTTTAGCTGGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRICFCHE*FLAGQQ
Trigger: TTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCA...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTAACAACACAGGATTCTaGAGGGCTGTCTGGATAAAA +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRINNTGF*RAVWIK
Trigger: TTTTATCCAGACAGCCCTCCAGAATCCTGTGTTGTT...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR CCA 90 bp CATTTCTTGAAATCATTCAACTATATATTTCAGCCACTGTCTCCTAAGGAGGACTCTTCTCTCATCCACTaGGTGTCCTCAGGGAGGACC +
Preference number: 2 (lower is better)
Translates to: HFLKSFNYIFQPLSPKEDSSLIH*VSSGRT
Trigger: GGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGA...GTCCTCCTTAGGAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CCA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTGATGTCATGTGTGAATaGCTAAAATATTTCCGTGCG +
Preference number: 2 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRIDVMCE*LKYFRA
Trigger: CGCACGGAAATATTTTAGCCATTCACACATGACATC...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCCACGGTGGCAGCAGCTaGTGTCCCCCTGAGACCAGG +
Preference number: 3 (lower is better)
Translates to: ARGSDKEISLRAGPWPASHGGSS*CPPETR
Trigger: CCTGGTCTCAGGGGGACACAAGCTGCTGCCACCGTG...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR GCA 72 bp GGTGAGGCTGCTGTAGAGCCTGGCTGGGGGCGCCTCTaGTCCAGCCCATGCACCCTGCAGGGGACCTTCTGC +
Preference number: 3 (lower is better)
Translates to: GEAAVEPGWGRL*SSPCTLQGTFC
Trigger: GCAGAAGGTCCCCTGCAGGGTGCATGGGCTGGAGCAGAGGCGCCCCCAGCCAGGCTCTACAGCAGCCTCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR GCA 72 bp GTCTCCAGGCCCGGGGGTCAGACAAGGAGATCTCTTTaGGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTA +
Preference number: 3 (lower is better)
Translates to: VSRPGGQTRRSL*GLGPGPPALLV
Trigger: TACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGCCTGGAGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp CGCTCCATCGCACGGTGGCAGCAGCTTGTGTCCCCCTaGGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAG +
Preference number: 3 (lower is better)
Translates to: RSIARWQQLVSP*DQAGWLGHLVQ
Trigger: CTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCTGCTGCCACCGTGCGATGGAGCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR GCA 72 bp CCCAACCAACTCAACCACGGGACTCAGCCACAGCACTaGCAGGGCAGCCGAGCTCACACAGCCAAGGTGGGC +
Preference number: 3 (lower is better)
Translates to: PNQLNHGTQPQH*QGSRAHTAKVG
Trigger: GCCCACCTTGGCTGTGTGAGCTCGGCTGCCCTGGCAGTGCTGTGGCTGAGTCCCGTGGTTGAGTTGGTTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp TGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTaGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTT +
Preference number: 3 (lower is better)
Translates to: CRRRHSGPALWS*DPVPLPHSPSL
Trigger: AAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR GCA 72 bp TGGGCAGAGGGACTAACGTGTGCCCGCCTGCCCACCTaGCATCAGAGCGCTAGGGTCAGGACATGGCTATGC +
Preference number: 3 (lower is better)
Translates to: WAEGLTCARLPT*HQSARVRTWLC
Trigger: GCATAGCCATGTCCTGACCCTAGCGCTCTGATGGCAGGTGGGCAGGCGGGCACACGTTAGTCCCTCTGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp ACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTaGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCC +
Preference number: 3 (lower is better)
Translates to: TSCRRRHSGPAL*SWDPVPLPHSP
Trigger: GGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CCA 72 bp GCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCTTTaGGGCAGATCCCCGACACAAACTGAACCGAGCCGC +
Preference number: 3 (lower is better)
Translates to: ATRKPAAHVPGL*GRSPTQTEPSR
Trigger: GCGGCTCGGTTCAGTTTGTGTCGGGGATCTGCCCCAAAGGCCTGGCACATGCGCAGCAGGCTTCCTTGTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp GAGGGCTTTGGTGTGCCAGGTGGGGGCGGAAGTCACTaGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGA +
Preference number: 3 (lower is better)
Translates to: EGFGVPGGGGSH*GWDEHQPREPR
Trigger: TCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CAA 90 bp CCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGGCAGGCCCATTGGAAGCCGCTTCTGCTTTCTCCTaGGTGGGGTGTGTATCAGGC +
Preference number: 3 (lower is better)
Translates to: PGWLAGASGSVQAGPLEAASAFS*VGCVSG
Trigger: GCCTGATACACACCCCACCAAGGAGAAAGCAGAAGC...GGCTTCCAATGGGCCTGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACGACAAGGAGATCTCTTaGCGGGCTGGGCCCTGGCCC +
Preference number: 3 (lower is better)
Translates to: VCTAALPRGFLPSLQFANDKEIS*RAGPWP
Trigger: GGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTC...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CAA 90 bp GGAACAGGGGCTGGCTGTCCCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 3 (lower is better)
Translates to: GTGAGCPFERSRQAGPAGSEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...CCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGGACAGCCAGCCCCTGTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173922.2
3UTR TCA 72 bp CCTGCTGCTGTGACACTGTGCCTGGGACACAAGGACTaGGTGTGGCCTGGACCTCTCAGGCCGGTGGAAGAA +
Preference number: 3 (lower is better)
Translates to: PAAVTLCLGHKD*VWPGPLRPVEE
Trigger: TTCTTCCACCGGCCTGAGAGGTCCAGGCCACACTCAGTCCTTGTGTCCCAGGCACAGTGTCACAGCAGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR TCA 72 bp ATGCACAGGCAAGGCAGCCTGGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAGATCACACACTCACCC +
Preference number: 3 (lower is better)
Translates to: MHRQGSLAIVSP*SSSSRQITHSP
Trigger: GGGTGAGTGTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGTGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR CCA 72 bp TGTCCCCCTGAGACCAGGCTGGTTGGCTGGGGCATCTaGTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACA +
Preference number: 3 (lower is better)
Translates to: CPPETRLVGWGI*FSPGRPIGSQT
Trigger: TGTTTGGCTTCCAATGGGCCTGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR-3UTR CAA 90 bp CTCCCAGGAACAGGGGCTGGCTGTCCCTGTGTGGGTCGGAAGAAGTCAGTCCCGCCAGCTCCCAGAAACTaGACTCTTAGCCCAGAGTCT +
Preference number: 3 (lower is better)
Translates to: LPGTGAGCPCVGRKKSVPPAPRN*TLSPES
Trigger: AGACTCTGGGCTAAGAGTCAAGTTTCTGGGAGCTGG...CGGGACTGACTTCTTCCGACCCACACAGGGACAGCCAGCCCCTGTTCCTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR TCA 72 bp AGCCCATGCACCCTGCAGGGGACCTTCTGCCTCTCCTaGGGGGAAGGAGCCTGGTTCTATCTTTGCATGGAG +
Preference number: 3 (lower is better)
Translates to: SPCTLQGTFCLS*GEGAWFYLCME
Trigger: CTCCATGCAAAGATAGAACCAGGCTCCTTCCCCTCAGGAGAGGCAGAAGGTCCCCTGCAGGGTGCATGGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR TCA 72 bp AGAAGTGCGTGTGTGGGAGGGAGTAGCCTGCTGCTGTaGCACTGTGCCTGGGACACAAGGACTGAGTGTGGC +
Preference number: 3 (lower is better)
Translates to: RSACVGGSSLLL*HCAWDTRTECG
Trigger: GCCACACTCAGTCCTTGTGTCCCAGGCACAGTGTCACAGCAGCAGGCTACTCCCTCCCACACACGCACTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR GCA 72 bp GCACCAGAAGTGCGTGTGTGGGAGGGAGTAGCCTGCTaGTGTGACACTGTGCCTGGGACACAAGGACTGAGT +
Preference number: 3 (lower is better)
Translates to: APEVRVWEGVAC*CDTVPGTQGLS
Trigger: ACTCAGTCCTTGTGTCCCAGGCACAGTGTCACAGCAGCAGGCTACTCCCTCCCACACACGCACTTCTGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR GCA 72 bp ACAGCACCAGAAGTGCGTGTGTGGGAGGGAGTAGCCTaGTGCTGTGACACTGTGCCTGGGACACAAGGACTG +
Preference number: 3 (lower is better)
Translates to: TAPEVRVWEGVA*CCDTVPGTQGL
Trigger: CAGTCCTTGTGTCCCAGGCACAGTGTCACAGCAGCAGGCTACTCCCTCCCACACACGCACTTCTGGTGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR GCA 72 bp CTGGACCTGCACTCTGGAGCTGGGATCCAGTCCCTCTaGCTCACTCTCCCTCGCTTGGCATCAGGTTTTGAG +
Preference number: 3 (lower is better)
Translates to: LDLHSGAGIQSL*LTLPRLASGFE
Trigger: CTCAAAACCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CCA 72 bp CATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTaGACCTGCACTCTGGAGCTGGGATCCAGTCCCTCT +
Preference number: 3 (lower is better)
Translates to: HWKPNIMPAAAF*TCTLELGSSPS
Trigger: AGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CCA 72 bp GTGGCTAAGCCATTACAGGTGCTGAGGGAGGGGGTGTaGGCTGAGAGGTGGACAGAGGGAACTGGCATTTGC +
Preference number: 3 (lower is better)
Translates to: VAKPLQVLREGV*AERWTEGTGIC
Trigger: GCAAATGCCAGTTCCCTCTGTCCACCTCTCAGCCCACACCCCCTCCCTCAGCACCTGTAATGGCTTAGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CAA 90 bp CTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCTCCTCTCCAGTATGGGCTCACCTTaGAGAGGAGTCGGCAAGCAG +
Preference number: 3 (lower is better)
Translates to: LLLLSPWWGVYQAGQLLSSMGSP*RGVGKQ
Trigger: CTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACT...GGAGAGGAGCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR-3UTR CAA 90 bp GCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGAGCTTTGCCCCTGGCTTCTGCTTTCTCCTaGGTGGGGTGTGTATCAGGC +
Preference number: 3 (lower is better)
Translates to: AGISRCLYPLVAVRALPLASAFS*VGCVSG
Trigger: GCCTGATACACACCCCACCAAGGAGAAAGCAGAAGC...CAGGGGCAAAGCTCTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp TGGGCCTGCTGGGACTGGGCCCTGACACAGCAGTACAAGGGGCAGGTCTGGAAACCCAGTTTCTGGCCATaGACAGTGCTTACAGTTCAG +
Preference number: 3 (lower is better)
Translates to: WACWDWALTQQYKGQVWKPSFWP*TVLTVQ
Trigger: CTGAACTGTAAGCACTGTCAATGGCCAGAAACTGGG...TTTCCAGACCTGCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR GCA 72 bp GCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTaGAATTTGCTAACTTGTATGAGGCTGAGTGGCTGG +
Preference number: 3 (lower is better)
Translates to: ALLLCPEVSCPA*NLLTCMRLSGW
Trigger: CCAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR GCA 72 bp GGGGCAGGTCTGGAAATGGTCATGGTAGAGAGGTGGTaGCATCTCCCTCCAGAGCTTCCCTTAGCTGGCTCT +
Preference number: 3 (lower is better)
Translates to: GAGLEMVMVERW*HLPPELPLAGS
Trigger: AGAGCCAGCTAAGGGAAGCTCTGGAGGGAGATGGCACCACCTCTCTACCATGACCATTTCCAGACCTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp GGCCTGGACCTCTCAGGCCGGTGGAAGAACCAGGAGTaGAAAGACCTCAGGCCATGTCTTTGCAGTGGACAA +
Preference number: 3 (lower is better)
Translates to: GLDLSGRWKNQE*KDLRPCLCSGQ
Trigger: TTGTCCACTGCAAAGACATGGCCTGAGGTCTTTCCACTCCTGGTTCTTCCACCGGCCTGAGAGGTCCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR CCA 72 bp ACAAGGACTGAGTGTGGCCTGGACCTCTCAGGCCGGTaGAAGAACCAGGAGTGGAAAGACCTCAGGCCATGT +
Preference number: 3 (lower is better)
Translates to: TRTECGLDLSGR*KNQEWKDLRPC
Trigger: ACATGGCCTGAGGTCTTTCCACTCCTGGTTCTTCCACCGGCCTGAGAGGTCCAGGCCACACTCAGTCCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR CCA 72 bp TCTGGAAGTCAGTGCAGAAGGGTGCCCTGTTCTCTCTaGTGTCCCAAGCTCAGCTCTGTCCAGTGTCCGAGG +
Preference number: 3 (lower is better)
Translates to: SGSQCRRVPCSL*CPKLSSVQCPR
Trigger: CCTCGGACACTGGACAGAGCTGAGCTTGGGACACCAGAGAGAACAGGGCACCCTTCTGCACTGACTTCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
ENSMUST00000173922.2
3UTR CCA 72 bp CAAGGGGCAGGTCTGGAAATGGTCATGGTAGAGAGGTaGTGCCATCTCCCTCCAGAGCTTCCCTTAGCTGGC +
Preference number: 3 (lower is better)
Translates to: QGAGLEMVMVER*CHLPPELPLAG
Trigger: GCCAGCTAAGGGAAGCTCTGGAGGGAGATGGCACCACCTCTCTACCATGACCATTTCCAGACCTGCCCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp TTTGGTGTGCCAGGTGGGGGCGGAAGTCACTGGGGATaGGATGAGCACCAGCCTAGAGAGCCTAGAATAGCA +
Preference number: 3 (lower is better)
Translates to: FGVPGGGGSHWG*DEHQPREPRIA
Trigger: TGCTATTCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp CCAAATTCAGAGGACATGACAGCCAACAGAGGGCTTTaGTGTGCCAGGTGGGGGCGGAAGTCACTGGGGATG +
Preference number: 3 (lower is better)
Translates to: PNSEDMTANRGL*CARWGRKSLGM
Trigger: CATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp TGCAGCTTTTGTGATAGATGCACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAAGCAGCTCCTCCAGGC +
Preference number: 3 (lower is better)
Translates to: CSFCDRCTGKAA*LSCPPEAAPPG
Trigger: GCCTGGAGGAGCTGCTTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR-3UTR CAA 90 bp GGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTTGGCATCAGGTTTTCCAGCTCCCAGAAACTaGACTCTTAGCCCAGAGTCT +
Preference number: 3 (lower is better)
Translates to: GAGIQSLCLTLPRLASGFPAPRN*TLSPES
Trigger: AGACTCTGGGCTAAGAGTCAAGTTTCTGGGAGCTGG...AAAACCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR TCA 72 bp ATAGTCCAAACTTGTGGGCCTGCTGGGACTGGGCCCTaGCACAGCAGTACAAGGGGCAGGTCTGGAAATGGT +
Preference number: 3 (lower is better)
Translates to: IVQTCGPAGTGP*HSSTRGRSGNG
Trigger: ACCATTTCCAGACCTGCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCACAAGTTTGGACTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp CAGGCACTGGCAATCTGGGTCCAAATTCAGAGGACATaGCAGCCAACAGAGGGCTTTGGTGTGCCAGGTGGG +
Preference number: 3 (lower is better)
Translates to: QALAIWVQIQRT*QPTEGFGVPGG
Trigger: CCCACCTGGCACACCAAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTGGACCCAGATTGCCAGTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp CCCCAGACAGTCTGTTCACCTCAAGTCCTCCCAAGTTaGGTTCCACTGGGCAGGGCTCCTACATACACCCTC +
Preference number: 3 (lower is better)
Translates to: PQTVCSPQVLPS*VPLGRAPTYTL
Trigger: GAGGGTGTATGTAGGAGCCCTGCCCAGTGGAACTCAACTTGGGAGGACTTGAGGTGAACAGACTGTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR CCA 72 bp TGCTCCCCCAACTCCCAGGAACATCCCCCTACTTCCTaGGGACTGCTCTCTGAGGAGATGGCTTCTGTCTTT +
Preference number: 3 (lower is better)
Translates to: CSPNSQEHPPTS*GLLSEEMASVF
Trigger: AAAGACAGAAGCCATCTCCTCAGAGAGCAGTCCCCAGGAAGTAGGGGGATGTTCCTGGGAGTTGGGGGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR TCA 72 bp CTGGAGGTGCTGGGAATAGAACAGTGCCCTTTGCAGTaGCATAGCTACAAGGAAGCCTGCTGCGCATGTGCC +
Preference number: 3 (lower is better)
Translates to: LEVLGIEQCPLQ*HSYKEACCACA
Trigger: GGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACTGTTCTATTCCCAGCACCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp AGATCCAATGGTTACACAGCACCAGAAGTGCGTGTGTaGGAGGGAGTAGCCTGCTGCTGTGACACTGTGCCT +
Preference number: 3 (lower is better)
Translates to: RSNGYTAPEVRV*EGVACCCDTVP
Trigger: AGGCACAGTGTCACAGCAGCAGGCTACTCCCTCCCACACACGCACTTCTGGTGCTGTGTAACCATTGGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp CAGCCTGGCTATCGTGTCCCCCTGAAGCAGCTCCTCCAGGCAGATCACACACTCGAACAAATGGGGCACTaGAAACCTTCTTTCCCGAAA +
Preference number: 3 (lower is better)
Translates to: QPGYRVPLKQLLQADHTLEQMGH*KPSFPK
Trigger: TTTCGGGAAAGAAGGTTTCAAGTGCCCCATTTGTTC...GAGTGTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGCCAGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR-3UTR CAA 90 bp TGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCTCCAGCTCCCAGAAACTaGACTCTTAGCCCAGAGTCT +
Preference number: 3 (lower is better)
Translates to: CLSASAFSLVGCVSGRPAPAPRN*TLSPES
Trigger: AGACTCTGGGCTAAGAGTCAAGTTTCTGGGAGCTGG...AGCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR-3UTR CAA 90 bp CATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGTCCAGGCAGGCCCATaGGAAGCCAAACATCATGCC +
Preference number: 3 (lower is better)
Translates to: HSSLIHWVSSGRTIFWKSVQAGP*EAKHHA
Trigger: GGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGAC...TGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR-3UTR CAA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCCTTGCACAGAGCAATaGCTTCAGGACGCATCTGAG +
Preference number: 3 (lower is better)
Translates to: CMRLSGWFWFKDCELEEAPCTEQ*LQDASE
Trigger: CTCAGATGCGTCCTGAAGCAATTGCTCTGTGCAAGG...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp GCTAGGGTCAGGACATGGCTATGCTTGCTTCTGTCATaGGTGGTTTTTAGCTGGGCAGCAAACAGCAGGCTG +
Preference number: 3 (lower is better)
Translates to: ARVRTWLCLLLS*VVFSWAANSRL
Trigger: CAGCCTGCTGTTTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCAAGCATAGCCATGTCCTGACCCTAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR GCA 72 bp GCCATCAGAGCGCTAGGGTCAGGACATGGCTATGCTTaGTTCTGTCATGAGTGGTTTTTAGCTGGGCAGCAA +
Preference number: 3 (lower is better)
Translates to: AIRALGSGHGYA*FCHEWFLAGQQ
Trigger: TTGCTGCCCAGCTAAAAACCACTCATGACAGAAGCAAGCATAGCCATGTCCTGACCCTAGCGCTCTGATGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp AAGGTACCCTGGGGAAGAAATGAAGGTCAGATCCAATaGTTACACAGCACCAGAAGTGCGTGTGTGGGAGGG +
Preference number: 3 (lower is better)
Translates to: KVPWGRNEGQIQ*LHSTRSACVGG
Trigger: CCCTCCCACACACGCACTTCTGGTGCTGTGTAACCATTGGATCTGACCTTCATTTCTTCCCCAGGGTACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp CGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGTCATCTTCCTCTTTTTaGGCAAGGAAATCAAGGAAA +
Preference number: 3 (lower is better)
Translates to: RAGPWPASSAGRIIYRTGSSSSF*ARKSRK
Trigger: TTTCCTTGATTTCCTTGCCAAAAAAGAGGAAGATGA...CCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CAA 90 bp TGTGATAGATGCACAGGCAAGGCAGCCTGGCTATCGTGTCCCCCTGAAGCAGCTGAACAAATGGGGCACTaGAAACCTTCTTTCCCGAAA +
Preference number: 3 (lower is better)
Translates to: CDRCTGKAAWLSCPPEAAEQMGH*KPSFPK
Trigger: TTTCGGGAAAGAAGGTTTCAAGTGCCCCATTTGTTC...AGCTGCTTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGTGCATCTATCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR-3UTR CAA 90 bp TGTATGAGGCTGAGTGGCTGGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCCCTGCAATTTGCTAACTaGTATGAGGCTGAGTGGCTG +
Preference number: 3 (lower is better)
Translates to: CMRLSGWFWFKDCELEEALQFAN*YEAEWL
Trigger: CAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAG...GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp GCCTGCAATTTGCTAACTTGTATGAGGCTGAGTGGCTaGTTCTGGTTCAAGGACTGTGAGCTGGAAGAAGCC +
Preference number: 3 (lower is better)
Translates to: ACNLLTCMRLSG*FWFKDCELEEA
Trigger: GGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp AGTAAAGTGCCCCAGTACAGACAAGAGCCCAGTTTCTaGCCATTGACAGTGCTTACAGTTCAGGTCCTGAGG +
Preference number: 3 (lower is better)
Translates to: SKVPQYRQEPSF*PLTVLTVQVLR
Trigger: CCTCAGGACCTGAACTGTAAGCACTGTCAATGGCCAGAAACTGGGCTCTTGTCTGTACTGGGGCACTTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CCA 72 bp GTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTaGATAAAAGGTGACACACACAAGTGCCACCTTGGG +
Preference number: 3 (lower is better)
Translates to: VGTNNTGFWRAV*IKGDTHKCHLG
Trigger: CCCAAGGTGGCACTTGTGTGTGTCACCTTTTATCCAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CAA 90 bp AATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAAGTATGGGCTCACCTTaGAGAGGAGTCGGCAAGCAG +
Preference number: 3 (lower is better)
Translates to: NSFFSHPLGVLREDHFLESMGSP*RGVGKQ
Trigger: CTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACT...TTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp GCAGATCACACACTCACCCGCATCTTTAGTCAGCACATCATCATTGTAGGACAGTCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 3 (lower is better)
Translates to: ADHTLTRIFSQHIIIVGQSEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...CTGTCCTACAATGATGATGTGCTGACTAAAGATGCGGGTGAGTGTGTGATCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
3UTR GCA 72 bp AAGAACCAGGAGTGGAAAGACCTCAGGCCATGTCTTTaGAGTGGACAATGTCTGTTCCACAGGCCACTACTT +
Preference number: 3 (lower is better)
Translates to: KNQEWKDLRPCL*SGQCLFHRPLL
Trigger: AAGTAGTGGCCTGTGGAACAGACATTGTCCACTGCAAAGACATGGCCTGAGGTCTTTCCACTCCTGGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR CCA 72 bp AATTTGCTAACTTGTATGAGGCTGAGTGGCTGGTTCTaGTTCAAGGACTGTGAGCTGGAAGAAGCCCAGAGC +
Preference number: 3 (lower is better)
Translates to: NLLTCMRLSGWF*FKDCELEEAQS
Trigger: GCTCTGGGCTTCTTCCAGCTCACAGTCCTTGAACCAGAACCAGCCACTCAGCCTCATACAAGTTAGCAAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR-3UTR CAA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGTTTGCCTTATTTGCTTaGTATATTTTGGGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: FSERQSRNEQHRILEGCLFALFA*YILGEG
Trigger: CCCCTCCCCCAAAATATACAAAGCAAATAAGGCAAA...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp GAAGGAGCCTGGTTCTATCTTTGCATGGAGTTCTCATaGCTAGGTTACTATCGCTCTTTCATGCTCCCCCAA +
Preference number: 3 (lower is better)
Translates to: EGAWFYLCMEFS*LGYYRSFMLPQ
Trigger: TTGGGGGAGCATGAAAGAGCGATAGTAACCTAGTCATGAGAACTCCATGCAAAGATAGAACCAGGCTCCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR-3UTR CAA 90 bp GGCTTGCTCCCAAACTACTTCAGGATGAAGAAACCCAAACACCAGTCCCGAATTTTTGCCTTATTTGCTTaGTATATTTTGGGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: GLLPNYFRMKKPKHQSRIFALFA*YILGEG
Trigger: CCCCTCCCCCAAAATATACAAAGCAAATAAGGCAAA...AATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR-3UTR CAA 90 bp TTCTCAGAAAGGCAGAGTAGGAACGAACAACACAGGATTCTGGAGGGCTGTCTGCTGAAATATCAGTCGTaGAAGATTCAACAATGGACA +
Preference number: 3 (lower is better)
Translates to: FSERQSRNEQHRILEGCLLKYQS*KIQQWT
Trigger: TGTCCATTGTTGAATCTTCAACGACTGATATTTCAG...CAGACAGCCCTCCAGAATCCTGTGTTGTTCGTTCCTACTCTGCCTTTCTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp CATGATTCTTTGGCTTGCTCCCAAACTACTTCAGGATaGAGAAACCCAAACACCAGTCCCGAATTCACCATT +
Preference number: 3 (lower is better)
Translates to: HDSLACSQTTSG*RNPNTSPEFTI
Trigger: AATGGTGAATTCGGGACTGGTGTTTGGGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCCAAAGAATCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR CCA 72 bp TTCTTAGTCCAACTTCAGGTCTGTCTCATGATTCTTTaGCTTGCTCCCAAACTACTTCAGGATGAAGAAACC +
Preference number: 3 (lower is better)
Translates to: FLVQLQVCLMIL*LAPKLLQDEET
Trigger: GGTTTCTTCATCCTGAAGTAGTTTGGGAGCAAGCCAAAGAATCATGAGACAGACCTGAAGTTGGACTAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
3UTR TCA 72 bp TTTCAGCCACTGTCTCCTAAGGAGGACATTCTCCTATaGGTTTCAATACTATTAAATGGCTTAGATGGGTGG +
Preference number: 3 (lower is better)
Translates to: FQPLSPKEDILL*VSILLNGLDGW
Trigger: CCACCCATCTAAGCCATTTAATAGTATTGAAACTCATAGGAGAATGTCCTCCTTAGGAGACAGTGGCTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR TCA 72 bp GAGGGGAGACCATATGGGATTAGATTATACATTTCTTaGAATCATTCAACTATATATTTCAGCCACTGTCTC +
Preference number: 3 (lower is better)
Translates to: EGRPYGIRLYIS*NHSTIYFSHCL
Trigger: GAGACAGTGGCTGAAATATATAGTTGAATGATTTCAAGAAATGTATAATCTAATCCCATATGGTCTCCCCTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCCCCCTCCGGCCGTGCTaGGGTCCATGCCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: ARGSDKEISLRAGPWPASPLRPC*GPCPCP
Trigger: CGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGG...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp CCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGGCACCCCTCCGGCCGTaGTGGGGTCCATGCCCATGC +
Preference number: 4 (lower is better)
Translates to: PAKYGLTFERSRQAGPAGAPLRP*WGPCPC
Trigger: GCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGC...CCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR CAA 72 bp TGTCTCCAGGCCCGGGGGTCAGACAAGGAGATCTCTTaGCGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: CLQARGSDKEIS*RAGPWPASSAG
Trigger: ACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGCCTGGAGACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp CTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCTCCTCTCCTGCCCGCCACCGAGCTaGCCGAGCGGCTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: LLLLSPWWGVYQAGQLLSCPPPS*PSGCAA
Trigger: GGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCGGGCA...GGAGAGGAGCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
CDS-3UTR TCA 90 bp TGGGGCATCTGGTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGTGCCCGCCACCGAGCTaGCCGAGCGGCTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: WGIWFSPGRPIGSQTSCRCPPPS*PSGCAA
Trigger: GGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCGGGCA...CCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAACCAGATGCCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp TGGGCCTGCTGGGACTGGGCCCTGACACAGCAGTACAAGGGGCAGGTCTGGAAACCGTGCTGGGGTCCATaGCCATGCCCGCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: WACWDWALTQQYKGQVWKPCWGP*PCPPPS
Trigger: GCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGG...TTTCCAGACCTGCCCCTTGTACTGCTGTGTCAGGGCCCAGTCCCAGCAGGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp CTGCACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTTGGCACCGTGCTGGGGTCCATaGCCATGCCCGCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: LHSGAGIQSLCLTLPRLAPCWGP*PCPPPS
Trigger: GCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGG...TGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp CTGCACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTTGGCAGCACCCCTCCGGCCGTaGTGGGGTCCATGCCCATGC +
Preference number: 4 (lower is better)
Translates to: LHSGAGIQSLCLTLPRLAAPLRP*WGPCPC
Trigger: GCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGC...TGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGCCCCTCCGGCCGTGCTaGGGTCCATGCCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: SVQAGPLEAKHHAGGGILPLRPC*GPCPCP
Trigger: CGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGG...CAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp AGCTTGTGTCCCCCTGAGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAAGGTGGAGTCCGACGTaGACCCTCCGCCGCCCGGCG +
Preference number: 4 (lower is better)
Translates to: SLCPPETRLVGWGIWFSPRWSPT*TLRRPA
Trigger: CGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCT...TGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp GGAGCTCTCAGAAGGCTTTCTGGGCTCCTCAGAGCTAAGGGGAAGAACCCATCCTGCCCGCCACCGAGCTaGCCGAGCGGCTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: GALRRLSGLLRAKGKNPSCPPPS*PSGCAA
Trigger: GGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCGGGCA...GGATGGGTTCTTCCCCTTAGCTCTGAGGAGCCCAGAAAGCCTTCTGAGAGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp GGAACAGGGGCTGGCTGTCCCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GTGAGCPFERSRQAGPAGAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...CCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGGACAGCCAGCCCCTGTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp AGCTTGTGTCCCCCTGAGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGCACCCCTCCGGCCGTaGTGGGGTCCATGCCCATGC +
Preference number: 4 (lower is better)
Translates to: SLCPPETRLVGWGIWFSPAPLRP*WGPCPC
Trigger: GCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGC...TGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTCCCCTCCGGCCGTGCTaGGGTCCATGCCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: FSPGRPIGSQTSCRRRHSPLRPC*GPCPCP
Trigger: CGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGG...AGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CAA 72 bp GTGGCAGCAGCTTGTGTCCCCCTGAGACCAGGCTGGTaGGCTGGGGCATCTGGTTCAGTCCAGGCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: VAAACVPLRPGW*AGASGSVQAGP
Trigger: TGGGCCTGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACAAGCTGCTGCCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACCCCCTCCGGCCGTGCTaGGGTCCATGCCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: VCTAALPRGFLPSLQFANPLRPC*GPCPCP
Trigger: CGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGG...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp TCTGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGTGCCCGCCACCGAGCTaGCCGAGCGGCTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: SVFLLLLSPWWGVYQAGQCPPPS*PSGCAA
Trigger: GGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCGGGCA...CTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
CDS-3UTR TCA 90 bp GAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTGGGATCCCGTCTCTATGGTaGCCGCCGCCGGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: EAKHHAGGGILDLHSGAGIPSLW*PPPVSW
Trigger: CCAAGAGACCGGCGGCGGTCACCATAGAGACGGGAT...CCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp TGTGTCCCCCTGAGACCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGGCAATCCCGTCTCTATGGTaGCCGCCGCCGGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: CVPLRPGWLAGASGSVQAIPSLW*PPPVSW
Trigger: CCAAGAGACCGGCGGCGGTCACCATAGAGACGGGAT...TGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGGTCTCAGGGGGACACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp GGTGGGGGCGGAAGTCACTGGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGAGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GGGGSHWGWDEHQPREPRAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...TCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp AAGCATGCCCATGAGTCAGCACTTGGCTCTGCACGGAGCAACAGGCAAGCAGAGGCACCCCTCCGGCCGTaGTGGGGTCCATGCCCATGC +
Preference number: 4 (lower is better)
Translates to: KHAHESALGSARSNRQAEAPLRP*WGPCPC
Trigger: GCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGC...CTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACGCACCCCTCCGGCCGTaGTGGGGTCCATGCCCATGC +
Preference number: 4 (lower is better)
Translates to: VCTAALPRGFLPSLQFANAPLRP*WGPCPC
Trigger: GCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGC...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp TTCAAAGACACAGCCGAGCCACTATGTAGAGCCTCTGCCCAGGAGTGGCTAAGCAGGTGGAGTCCGACGTaGACCCTCCGCCGCCCGGCG +
Preference number: 4 (lower is better)
Translates to: FKDTAEPLCRASAQEWLSRWSPT*TLRRPA
Trigger: CGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCT...GCTTAGCCACTCCTGGGCAGAGGCTCTACATAGTGGCTCGGCTGTGTCTTTGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp CCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAGGCGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: PESPAKYGLTFERSRQAGAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...GCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR GCA 90 bp TGCCCAGGAGTGGCTAAGCCATTACAGGTGCTGAGGGAGGGGGTGTGGGCTGAGCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: CPGVAKPLQVLREGVWAEHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...CTCAGCCCACACCCCCTCCCTCAGCACCTGTAATGGCTTAGCCACTCCTGGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp GGACCTGCACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTTCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: GPALWSWDPVPLPHSPSLHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...AAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp CCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTC +
Preference number: 4 (lower is better)
Translates to: PIGSQTSCRRRHSGPALWCRGHR*SPTWTL
Trigger: GAGGGTCCACGTCGGACTCCACCTATGCCCACGGCA...CCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp GCTGGCATCTCCAGGTGCCTGTATCCTCTGGTGGCTGTAAGAGCTTTGCCCCTGCCACCAGCCAGGGCCTaGGAAATCCCCCTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: AGISRCLYPLVAVRALPLPPARA*EIPLQP
Trigger: AGGCTGGAGGGGGATTTCCCAGGCCCTGGCTGGTGG...CAGGGGCAAAGCTCTTACAGCCACCAGAGGATACAGGCACCTGGAGATGCCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166859.8
CDS-3UTR TCA 90 bp AGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAATCCCGTCTCTATGGTaGCCGCCGCCGGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SPESPAKYGLTFERSRQAIPSLW*PPPVSW
Trigger: CCAAGAGACCGGCGGCGGTCACCATAGAGACGGGAT...TGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
CDS-3UTR TCA 90 bp CTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LGPGPPALLVGLYIERGDAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...GTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp CCAACTCCCAGGAACATCCCCCTACTTCCTGGGGACTGCTCTCTGAGGAGATGGGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: PTPRNIPLLPGDCSLRRWAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...CCATCTCCTCAGAGAGCAGTCCCCAGGAAGTAGGGGGATGTTCCTGGGAGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
3UTR CAA 72 bp TTAGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTaGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCAG +
Preference number: 4 (lower is better)
Translates to: LAQSLPPSMGSP*RGVGKQAQQGQ
Trigger: CTGACCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173819.2
CDS-3UTR TCA 90 bp ATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTGCCCGCCACCGAGCTaGCCGAGCGGCTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: IHSSLIHWVSSGRTIFWKCPPPS*PSGCAA
Trigger: GGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCGGGCA...CTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp TCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCTGGGCAGATCCCGTCTCTATGGTaGCCGCCGCCGGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SPKVERLVMQRANWGAGQIPSLW*PPPVSW
Trigger: CCAAGAGACCGGCGGCGGTCACCATAGAGACGGGAT...CTGCCCAGCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp CCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAACCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: PIGSQTSCRRRHSGPALWNHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGTT...CCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp TCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGAACCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: SVQAGPLEAKHHAGGGILNHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGTT...CAGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp AAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTGGGATCCAGCATCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: KHHAGGGILDLHSGAGIQHHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGATG...CTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171182.8
CDS-3UTR TCA 90 bp CAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAGGCCCATCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: QSLPPSMGSPLRGVGKQAHHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGATG...GGCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR CCA 90 bp CATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAAGGTGGAGTCCGACGTaGACCCTCCGCCGCCCGGCG +
Preference number: 4 (lower is better)
Translates to: HSSLIHWVSSGRTIFWKSRWSPT*TLRRPA
Trigger: CGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCT...TGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp GTGAGGGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGTGGAGTCCGACGTaGACCCTCCGCCGCCCGGCG +
Preference number: 4 (lower is better)
Translates to: VRGRIEVNSFFSHPLGVLRWSPT*TLRRPA
Trigger: CGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCT...GAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCCCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TTCTGGACCTGCACTCTGGAGCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: FWTCTLELGSSPSASLSLTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...GAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGCTCCAGAGTGCAGGTCCAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TCTCTCTGGTGTCCCAAGCTCAGCTCTGTCCAGTGTCCGAGGAGCCTCCTCCCAACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: SLWCPKLSSVQCPRSLLPTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...TGGGAGGAGGCTCCTCGGACACTGGACAGAGCTGAGCTTGGGACACCAGAGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp CAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTGGGATCCAACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: QTSCRRRHSGPALWSWDPTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...TGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp GGAACAGGGGCTGGCTGTCCCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: GTGAGCPFERSRQAGPAGVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...CCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGGACAGCCAGCCCCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp TTTGTGATAGATGCACAGGCAAGGCAGCCTGGCTATCGTGTCCCCCTGAAGCAGGCCCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: FVIDAQARQPGYRVPLKQAHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGGC...CTGCTTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGTGCATCTATCACAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS-3UTR GCA 90 bp AGTGCCCTTTGCAGTGACATAGCTACAAGGAAGCCTGCTGCGCATGTGCCAGGCCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: SALCSDIATRKPAAHVPGHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...GCCTGGCACATGCGCAGCAGGCTTCCTTGTAGCTATGTCACTGCAAAGGGCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp AAGCAGGCCCAGCAGGGTCAGTCAGCAGGGTGCTCTGGACAAGATCTGTTCACTCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: KQAQQGQSAGCSGQDLFTHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...AGTGAACAGATCTTGTCCAGAGCACCCTGCTGACTGACCCTGCTGGGCCTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS-3UTR GCA 90 bp CTATCGTGTCCCCCTGAAGCAGCTCCTCCAGGCAGATCACACACTCACCCGCATACCAACAGCCCACTGTaGGAGCTGAACCACCTGGGT +
Preference number: 4 (lower is better)
Translates to: LSCPPEAAPPGRSHTHPHTNSPL*ELNHLG
Trigger: ACCCAGGTGGTTCAGCTCGCACAGTGGGCTGTTGGT...ATGCGGGTGAGTGTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS-3UTR CCA 90 bp ATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGAGGTGGAGTCCGACGTaGACCCTCCGCCGCCCGGCG +
Preference number: 4 (lower is better)
Translates to: IHSSLIHWVSSGRTIFWKRWSPT*TLRRPA
Trigger: CGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCT...CTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TTCAAAGACACAGCCGAGCCACTATGTAGAGCCTCTGCCCAGGAGTGGCTAAGCTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTC +
Preference number: 4 (lower is better)
Translates to: FKDTAEPLCRASAQEWLSCRGHR*SPTWTL
Trigger: GAGGGTCCACGTCGGACTCCACCTATGCCCACGGCA...GCTTAGCCACTCCTGGGCAGAGGCTCTACATAGTGGCTCGGCTGTGTCTTTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp CTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCTCCTCTCCACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: LLLLSPWWGVYQAGQLLSTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...GGAGAGGAGCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR TCA 90 bp AAGAAAATGCCCTTTCCCTCCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAAATCCCGTCTCTATGGTaGCCGCCGCCGGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: KKMPFPSWVEGEGKDRGQIPSLW*PPPVSW
Trigger: CCAAGAGACCGGCGGCGGTCACCATAGAGACGGGAT...TTGACCTCTATCCTTCCCCTCACCCTCGACCCAGGAGGGAAAGGGCATTTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp ATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGCCGTGCTGGGGTCCATaGCCATGCCCGCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: IHSSLIHWVSSGRTIFWKPCWGP*PCPPPS
Trigger: GCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGG...CTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp CATGAGTGGTTTTTAGCTGGGCAGCAAACAGCAGGCTGTAAACATCACAAGGGACCGTGCTGGGGTCCATaGCCATGCCCGCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: HEWFLAGQQTAGCKHHKGPCWGP*PCPPPS
Trigger: GCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGG...TCCCTTGTGATGTTTACAGCCTGCTGTTTGCTGCCCAGCTAAAAACCACTCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp GGTGGGGGCGGAAGTCACTGGGGATGGGATGAGCACCAGCCTAGAGAGCCTAGAAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: GGGGSHWGWDEHQPREPRSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...TCTAGGCTCTCTAGGCTGGTGCTCATCCCATCCCCAGTGACTTCCGCCCCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp GAAGCCAAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTGGGAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: EAKHHAGGGILDLHSGAGSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...CCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTTGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp AATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAACCCCTCCGGCCGTGCTaGGGTCCATGCCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: NSFFSHPLGVLREDHFLEPLRPC*GPCPCP
Trigger: CGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGG...TTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TTGACTCTTAGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTC +
Preference number: 4 (lower is better)
Translates to: LTLSPESPAKYGLTFERSCRGHR*SPTWTL
Trigger: GAGGGTCCACGTCGGACTCCACCTATGCCCACGGCA...ACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCTAAGAGTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
3UTR CAA 72 bp GCTGGGATCCAGTCCCTCTGCCTCACTCTCCCTCGCTaGGCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCC +
Preference number: 4 (lower is better)
Translates to: AGIQSLCLTLPR*ASGFEVRVERA
Trigger: GGCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGACTGGATCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR TCA 90 bp TTCAAAGACACAGCCGAGCCACTATGTAGAGCCTCTGCCCAGGAGTGGCTAAGCAACCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: FKDTAEPLCRASAQEWLSNHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGTT...GCTTAGCCACTCCTGGGCAGAGGCTCTACATAGTGGCTCGGCTGTGTCTTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp CCTCGCTTGGCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCTGATGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: PRLASGFEVRVERANVPDAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...ATCAGGGACATTGGCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
ENSMUST00000174454.8
CDS-3UTR GCA 90 bp AATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAACCGTGCTGGGGTCCATaGCCATGCCCGCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: NSFFSHPLGVLREDHFLEPCWGP*PCPPPS
Trigger: GCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGG...TTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp TCTCTCTGGTGTCCCAAGCTCAGCTCTGTCCAGTGTCCGAGGAGCCTCCTCCCATCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLWCPKLSSVQCPRSLLPSLGNH*RGHRWS
Trigger: ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGA...TGGGAGGAGGCTCCTCGGACACTGGACAGAGCTGAGCTTGGGACACCAGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp TGGTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: WFSPGRPIGSQTSCRRRHSLGNH*RGHRWS
Trigger: ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGA...ATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp TGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCTCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: CLSASAFSLVGCVSGRPAHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...AGCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR GCA 90 bp TCTGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: SVFLLLLSPWWGVYQAGQHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...CTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR GCA 90 bp GTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: VQSRQAHWKPNIMPAAAFSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...GAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp AAACATCATGCCGGCGGCGGCATTCTGGACCTGCACTCTGGAGCTGGGATCCAGAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: KHHAGGGILDLHSGAGIQSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...CTGGATCCCAGCTCCAGAGTGCAGGTCCAGAATGCCGCCGCCGGCATGATGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp GTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: VQSRQAHWKPNIMPAAAFVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...GAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CAA 72 bp CTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTaGCTAACTTGTATGAGGCTGAGTGGCTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLCPEVSCPACN*LTCMRLSGWFW
Trigger: CCAGAACCAGCCACTCAGCCTCATACAAGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 72 bp TCCAAATTCAGAGGACATGACAGCCAACAGAGGGCTTaGGTGTGCCAGGTGGGGGCGGAAGTCACTGGGGAT +
Preference number: 4 (lower is better)
Translates to: SKFRGHDSQQRA*VCQVGAEVTGD
Trigger: ATCCCCAGTGACTTCCGCCCCCACCTGGCACACCAAAGCCCTCTGTTGGCTGTCATGTCCTCTGAATTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
3UTR CAA 72 bp CCCCCAGACAGTCTGTTCACCTCAAGTCCTCCCAAGTaGAGTTCCACTGGGCAGGGCTCCTACATACACCCT +
Preference number: 4 (lower is better)
Translates to: PPDSLFTSSPPK*SSTGQGSYIHP
Trigger: AGGGTGTATGTAGGAGCCCTGCCCAGTGGAACTCAACTTGGGAGGACTTGAGGTGAACAGACTGTCTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
CDS-3UTR TCA 90 bp GGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GKDRGQFILLSSTGCPQGAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...TCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp CTGGGGCATCTGGTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGTCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: LGHLVQSRQAHWKPNIMPSLGNH*RGHRWS
Trigger: ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGA...CGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAACCAGATGCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp CTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCTCCTCTCCAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: LLLLSPWWGVYQAGQLLSSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...GGAGAGGAGCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR GCA 90 bp TTAGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGAGCACATCATCACTGTaGGAGCTGAACCACCTGGGT +
Preference number: 4 (lower is better)
Translates to: LAQSLPPSMGSPLRGVGKSTSSL*ELNHLG
Trigger: ACCCAGGTGGTTCAGCTCGCACAGTGATGATGTGCT...CTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR CCA 90 bp TTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGTTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTC +
Preference number: 4 (lower is better)
Translates to: FFSHPLGVLREDHFLEVSCRGHR*SPTWTL
Trigger: GAGGGTCCACGTCGGACTCCACCTATGCCCACGGCA...ACTGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp CTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGAGACGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: LGPGPPALLVGLYIERGDVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...GTCTCCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp TTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATTCTGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: FSPGRPIGSQTSCRRRHSVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...AGAATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
3UTR CAA 72 bp GTGCCCCAGTACAGACAAGAGCCCAGTTTCTGGCCATaGACAGTGCTTACAGTTCAGGTCCTGAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: VPQYRQEPSFWP*TVLTVQVLRRL
Trigger: CAGACGCCTCAGGACCTGAACTGTAAGCACTGTCAATGGCCAGAAACTGGGCTCTTGTCTGTACTGGGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR TCA 90 bp CATGAGTGGTTTTTAGCTGGGCAGCAAACAGCAGGCTGTAAACATCACAAGGGAGCTATCGTGTCCCCCTaGAGCAGCTCCTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: HEWFLAGQQTAGCKHHKGAIVSP*SSSSRQ
Trigger: CTGCCTGGAGGAGCTGCTTCAGGGGGACACGATAGC...TCCCTTGTGATGTTTACAGCCTGCTGTTTGCTGCCCAGCTAAAAACCACTCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp TCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCTGGGCAGTCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: SPKVERLVMQRANWGAGQSLGNH*RGHRWS
Trigger: ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGA...CTGCCCAGCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp AAGCATGCCCATGAGTCAGCACTTGGCTCTGCACGGAGCAACAGGCAAGCAGAGAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: KHAHESALGSARSNRQAESFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...CTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp GAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTC +
Preference number: 4 (lower is better)
Translates to: EVNSFFSHPLGVLREDHFCRGHR*SPTWTL
Trigger: GAGGGTCCACGTCGGACTCCACCTATGCCCACGGCA...AAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp CCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCAACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: PGSRVRGRIEVNSFFSHPTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...TGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCCCTCACCCTCGACCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp AAACGAATCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: KRIPKGRKVSDAESQLGRTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...GCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGATTCGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp CCTCGCTTGGCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCTGATACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: PRLASGFEVRVERANVPDTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...ATCAGGGACATTGGCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
ENSMUST00000174454.8
CDS-3UTR TCA 90 bp GGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAAACCACTGTGCGAGCTaGACCACCTGGGTGCGATGT +
Preference number: 4 (lower is better)
Translates to: GKDRGQFILLSSTGCPQGNHCAS*TTWVRC
Trigger: ACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGTT...TCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR GCA 90 bp TTCAAAGACACAGCCGAGCCACTATGTAGAGCCTCTGCCCAGGAGTGGCTAAGCTCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: FKDTAEPLCRASAQEWLSSLGNH*RGHRWS
Trigger: ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGA...GCTTAGCCACTCCTGGGCAGAGGCTCTACATAGTGGCTCGGCTGTGTCTTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp TCCCTCTGCCTCACTCTCCCTCGCTTGGCATCAGGTTTTGAGGTGAGGGTAGAAAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: SLCLTLPRLASGFEVRVESFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...TTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGGGAGAGTGAGGCAGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
ENSMUST00000174454.8
CDS-3UTR GCA 90 bp TCTGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGAGCACATCATCACTGTaGGAGCTGAACCACCTGGGT +
Preference number: 4 (lower is better)
Translates to: SVFLLLLSPWWGVYQAGQSTSSL*ELNHLG
Trigger: ACCCAGGTGGTTCAGCTCGCACAGTGATGATGTGCT...CTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR CCA 90 bp AGGATAGAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACACAGGCAAGGCAGCCTaGCTATCGTGTCCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: RIEVNSFFSHPLGVLREDTGKAA*LSCPPE
Trigger: TTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGT...GTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTCTATCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp TATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: YALLLCPEVSCPACNLLTVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...AGTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp CTGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: LSFCFCFLLGGVCIRQASVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...GCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR GCA 90 bp AAAGAAGAGAGAGAAGAAAAGGGATCCCCAAGCCTTTGGATGTGGGATCAAGTGCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: KEEREEKGSPSLWMWDQVHLGAM*RGRASA
Trigger: GGCGGATGCTCTACCTCTGCACATCGCACCCAGGTG...CACTTGATCCCACATCCAAAGGCTTGGGGATCCCTTTTCTTCTCTCTCTTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
CDS-3UTR TCA 90 bp AAGCATGCCCATGAGTCAGCACTTGGCTCTGCACGGAGCAACAGGCAAGCAGAGAACAAATGGGGCACTTaGAACCTGTTTTCCTGTAGA +
Preference number: 4 (lower is better)
Translates to: KHAHESALGSARSNRQAENKWGT*NLFSCR
Trigger: TCTACAGGAAAACAGGTTTCAAGTGCCCCATTTGTT...CTCTGCTTGCCTGTTGCTCCGTGCAGAGCCAAGTGCTGACTCATGGGCATGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166859.8
CDS-3UTR GCA 90 bp CTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGAGACACATTATAAAGTaGATTTCCATCTCATCGGAA +
Preference number: 4 (lower is better)
Translates to: LPPSMGSPLRGVGKQAQQRHIIK*ISISSE
Trigger: TTCCGATGAGATGGAAATGCACTTTATAATGTGTCT...CTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173819.2
CDS-3UTR GCA 90 bp AAACGAATCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCAGCTTTTGTGATAGATaGACAGGCAAGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: KRIPKGRKVSDAESQLGRSFCDR*TGKAAW
Trigger: CCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCT...GCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGATTCGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CCA 90 bp CCTCGCTTGGCATCAGGTTTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCTGATGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: PRLASGFEVRVERANVPDVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...ATCAGGGACATTGGCTCTTTCTACCCTCACCTCAAAACCTGATGCCAAGCGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
ENSMUST00000174454.8
3UTR CAA 72 bp GAAGAACCAGGAGTGGAAAGACCTCAGGCCATGTCTTaGCAGTGGACAATGTCTGTTCCACAGGCCACTACT +
Preference number: 4 (lower is better)
Translates to: EEPGVERPQAMS*QWTMSVPQATT
Trigger: AGTAGTGGCCTGTGGAACAGACATTGTCCACTGCAAAGACATGGCCTGAGGTCTTTCCACTCCTGGTTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
CDS-3UTR GCA 90 bp CAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAGGCCAGACACATTATAAAGTaGATTTCCATCTCATCGGAA +
Preference number: 4 (lower is better)
Translates to: QSLPPSMGSPLRGVGKQARHIIK*ISISSE
Trigger: TTCCGATGAGATGGAAATGCACTTTATAATGTGTCT...GGCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173819.2
CDS-3UTR GCA 90 bp TGGTTCAGTCCAGGCAGGCCCATTGGAAGCCAAACATCATGCCGGCGGCGGCATAGACACATTATAAAGTaGATTTCCATCTCATCGGAA +
Preference number: 4 (lower is better)
Translates to: WFSPGRPIGSQTSCRRRHRHIIK*ISISSE
Trigger: TTCCGATGAGATGGAAATGCACTTTATAATGTGTCT...ATGCCGCCGCCGGCATGATGTTTGGCTTCCAATGGGCCTGCCTGGACTGAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173506.8
CDS-3UTR CCA 90 bp GAGGGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGTCAGCAGGGTGCTCTaGACAAGATCTGTTCACTTC +
Preference number: 4 (lower is better)
Translates to: EGKDRGQFILLSSTGCPQVSRVL*TRSVHF
Trigger: GAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGAC...CTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
3UTR CAA 72 bp TTTGAGGTGAGGGTAGAAAGAGCCAATGTCCCTGATTaGCCTGACACCAGCAGCTGTTCTGGGCATTTACTT +
Preference number: 4 (lower is better)
Translates to: FEVRVERANVPD*PDTSSCSGHLL
Trigger: AAGTAAATGCCCAGAACAGCTGCTGGTGTCAGGCAAATCAGGGACATTGGCTCTTTCTACCCTCACCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
ENSMUST00000174333.8
ENSMUST00000174454.8
CDS-3UTR GCA 90 bp AAGAAAATGCCCTTTCCCTCCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAAAGACACATTATAAAGTaGATTTCCATCTCATCGGAA +
Preference number: 4 (lower is better)
Translates to: KKMPFPSWVEGEGKDRGQRHIIK*ISISSE
Trigger: TTCCGATGAGATGGAAATGCACTTTATAATGTGTCT...TTGACCTCTATCCTTCCCCTCACCCTCGACCCAGGAGGGAAAGGGCATTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp CCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAATTCATTCTTCTCTCATCCAAGACACATTATAAAGTaGATTTCCATCTCATCGGAA +
Preference number: 4 (lower is better)
Translates to: PGSRVRGRIEVNSFFSHPRHIIK*ISISSE
Trigger: TTCCGATGAGATGGAAATGCACTTTATAATGTGTCT...TGGATGAGAGAAGAATGAATTGACCTCTATCCTTCCCCTCACCCTCGACCCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS-3UTR GCA 90 bp TTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGTAGACACATTATAAAGTaGATTTCCATCTCATCGGAA +
Preference number: 4 (lower is better)
Translates to: FFSHPLGVLREDHFLEVSRHIIK*ISISSE
Trigger: TTCCGATGAGATGGAAATGCACTTTATAATGTGTCT...ACTGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
ENSMUST00000173506.8
3UTR CAA 72 bp CAAGTGTCCACGATGGGCTCTTCATCTTCCTCTTTTTaGGCAAGGAAATCAAGGAAATTTAAGGGGAGAAAA +
Preference number: 4 (lower is better)
Translates to: QVSTMGSSSSSF*ARKSRKFKGRK
Trigger: TTTTCTCCCCTTAAATTTCCTTGATTTCCTTGCCAAAAAAGAGGAAGATGAAGAGCCCATCGTGGACACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS CCA 90 bp GGTGACCGCCGCCGGTCTCTTGGTAACCATTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTCCGCCGCCCGGCGCCCTCTCGGAGT +
Preference number: 5 (lower is better)
Translates to: GDRRRSLGNHCRGHR*SPTWTLRRPAPSRS
Trigger: ACTCCGAGAGGGCGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS GCA 90 bp GCATCCCGTCTCTATGGTGACCGCCGCCGGTCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGTCCGACGTGGACCCTCCGCCGCCCG +
Preference number: 5 (lower is better)
Translates to: ASRLYGDRRRSLGNH*RGHRWSPTWTLRRP
Trigger: CGGGCGGCGGAGGGTCCACGTCGGACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACCATAGAGACGGGATGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CAA 90 bp CCAGGCTGGTTGGCTGGGGCATCTGGTTCAGTCCAGGCAGGCCCATTGGAAGCCACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGC +
Preference number: 5 (lower is better)
Translates to: PGWLAGASGSVQAGPLEATAAGL*VTIAVG
Trigger: GCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGT...GGCTTCCAATGGGCCTGCCTGGACTGAACCAGATGCCCCAGCCAACCAGCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
ENSMUST00000173506.8
CDS GCA 90 bp AGCACCAACAGCCCACTGTGCGAGCTGAACCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCCAGCGAGGCTCGGGAGCCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: STNSPLCELNHLGAM*RGRASASEAREPRY
Trigger: GTACCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGGCTGTTGGTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS-3UTR CAA 90 bp CGGGCTGGGCCCTGGCCCGCCAGCTCTGCTGGTAGGATTATATATAGAACGGGGACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGC +
Preference number: 5 (lower is better)
Translates to: RAGPWPASSAGRIIYRTGTAAGL*VTIAVG
Trigger: GCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGT...CCCCGTTCTATATATAATCCTACCAGCAGAGCTGGCGGGCCAGGGCCCAGCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CAA 90 bp GCCCGGGGGTCAGACAAGGAGATCTCTTTGCGGGCTGGGCCCTGGCCCGCCAGCTCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 5 (lower is better)
Translates to: ARGSDKEISLRAGPWPASSEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...GCTGGCGGGCCAGGGCCCAGCCCGCAAAGAGATCTCCTTGTCTGACCCCCGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS GCA 90 bp GTCAGCACATCATCACTGTGCGAGCTGAACCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCCAGCGAGGCTCGGGAGCCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: VSTSSLCELNHLGAM*RGRASASEAREPRY
Trigger: GTACCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCACAGTGATGATGTGCTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS-3UTR CAA 90 bp TTAGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGC +
Preference number: 5 (lower is better)
Translates to: LAQSLPPSMGSPLRGVGKTAAGL*VTIAVG
Trigger: GCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGT...CTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000171182.8
CDS-3UTR CAA 90 bp CCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 5 (lower is better)
Translates to: PAKYGLTFERSRQAGPAGSEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...CCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173819.2
CDS-3UTR CAA 90 bp AAGAAAATGCCCTTTCCCTCCTGGGTCGAGGGTGAGGGGAAGGATAGAGGTCAAACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGC +
Preference number: 5 (lower is better)
Translates to: KKMPFPSWVEGEGKDRGQTAAGL*VTIAVG
Trigger: GCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGT...TTGACCTCTATCCTTCCCCTCACCCTCGACCCAGGAGGGAAAGGGCATTTTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CAA 90 bp AAACGAATCCCCAAAGGTAGAAAGGTTAGTGATGCAGAGAGCCAACTGGGGCGCACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGC +
Preference number: 5 (lower is better)
Translates to: KRIPKGRKVSDAESQLGRTAAGL*VTIAVG
Trigger: GCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGT...GCGCCCCAGTTGGCTCTCTGCATCACTAACCTTTCTACCTTTGGGGATTCGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
CDS-3UTR CAA 90 bp AGCCCAGAGTCTCCCGCCAAGTATGGGCTCACCTTTGAGAGGAGTCGGCAAGCATCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 5 (lower is better)
Translates to: SPESPAKYGLTFERSRQASEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...TGCTTGCCGACTCCTCTCAAAGGTGAGCCCATACTTGGCGGGAGACTCTGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095176.12
ENSMUST00000173819.2
CDS-3UTR CAA 90 bp GTATGCACTGCTGCTCTGCCCCGAGGTTTCCTGCCCAGCCTGCAATTTGCTAACTCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 5 (lower is better)
Translates to: VCTAALPRGFLPSLQFANSEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...GTTAGCAAATTGCAGGCTGGGCAGGAAACCTCGGGGCAGAGCAGCAGTGCATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
CDS-3UTR CAA 90 bp GGCTGTCCCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCAGTCAGCAGGCGCCCCAATCTTTTCTaGTATCTTTCCAGTCTTGAT +
Preference number: 5 (lower is better)
Translates to: GCPFERSRQAGPAGSVSRRPNLF*YLSSLD
Trigger: ATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCG...CCTGCTGACTGACCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGGGACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173922.2
CDS-3UTR CAA 90 bp CTGTCTTTCTGCTTCTGCTTTCTCCTTGGTGGGGTGTGTATCAGGCAGGCCAGCGAACAAATGGGGCACTaGAAACCACTGTGCGAGCTG +
Preference number: 5 (lower is better)
Translates to: LSFCFCFLLGGVCIRQASEQMGH*KPLCEL
Trigger: CAGCTCGCACAGTGGTTTCAAGTGCCCCATTTGTTC...GCTGGCCTGCCTGATACACACCCCACCAAGGAGAAAGCAGAAGCAGAAAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095176.12
CDS-3UTR CAA 90 bp CCTTTGAGAGGAGTCGGCAAGCAGGCCCAGCAGGGTCAGTCAGCAGGGTGCTCTCGCCCCAATCTTTTCTaGTATCTTTCCAGTCTTGAT +
Preference number: 5 (lower is better)
Translates to: PLRGVGKQAQQGQSAGCSRPNLF*YLSSLD
Trigger: ATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCG...AGAGCACCCTGCTGACTGACCCTGCTGGGCCTGCTTGCCGACTCCTCTCAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000173922.2
ENSMUST00000174376.8
CDS-3UTR CAA 90 bp CATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAAGTCAGAACAAATGGGGCACTaGAAACCACTGTGCGAGCTG +
Preference number: 5 (lower is better)
Translates to: HSSLIHWVSSGRTIFWKSEQMGH*KPLCEL
Trigger: CAGCTCGCACAGTGGTTTCAAGTGCCCCATTTGTTC...TGACTTCCAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS-3UTR CAA 90 bp AGGATAGAGGTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACTCGGAAGCCACAGACTaGGAACAAATGGGGCACTTG +
Preference number: 5 (lower is better)
Translates to: RIEVNSFFSHPLGVLREDSEATD*EQMGHL
Trigger: CAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGA...GTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGACCTCTATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000166859.8
ENSMUST00000168428.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS TCA 90 bp TTTCCATCTCATCGGAAGCCACAGACTTGGAACAAATGGGGCACTTaGAACCTGTTTTCCTGTAGAAGTCTCTGCCAGGCCTTTGCTGCC +
Preference number: 5 (lower is better)
Translates to: FPSHRKPQTWNKWGT*NLFSCRSLCQAFAA
Trigger: GGCAGCAAAGGCCTGGCAGAGACTTCTACAGGAAAACAGGTTTCAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGATGAGATGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166859.8
ENSMUST00000174333.8
CDS TCA 90 bp TCTACCTCTTTACCGCCCCAATCTTTTCTTGTATCTTTCCAGTCTTaGTTCAGCACCAACAGCCCACTGTGCGAGCTGAACCACCTGGGT +
Preference number: 5 (lower is better)
Translates to: STSLPPQSFLVSFQS*FSTNSPLCELNHLG
Trigger: ACCCAGGTGGTTCAGCTCGCACAGTGGGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGTAAAGAGGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS-3UTR CAA 90 bp GTCAATTCATTCTTCTCTCATCCACTGGGTGTCCTCAGGGAGGACCATTTTCTGGAACAAATGGGGCACTaGAAACCACTGTGCGAGCTG +
Preference number: 5 (lower is better)
Translates to: VNSFFSHPLGVLREDHFLEQMGH*KPLCEL
Trigger: CAGCTCGCACAGTGGTTTCAAGTGCCCCATTTGTTC...CAGAAAATGGTCCTCCCTGAGGACACCCAGTGGATGAGAGAAGAATGAATTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS CCA 72 bp GGTAACCATTGCCGTGGGCATAGGTGGAGTCCGACGTaGACCCTCCGCCGCCCGGCGCCCTCTCGGAGTCGC +
Preference number: 6 (lower is better)
Translates to: GNHCRGHRWSPT*TLRRPAPSRSR
Trigger: GCGACTCCGAGAGGGCGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCTATGCCCACGGCAATGGTTACC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS CCA 72 bp CGCCGGTCTCTTGGTAACCATTGCCGTGGGCATAGGTaGAGTCCGACGTGGACCCTCCGCCGCCCGGCGCCC +
Preference number: 6 (lower is better)
Translates to: RRSLGNHCRGHR*SPTWTLRRPAP
Trigger: GGGCGCCGGGCGGCGGAGGGTCCACGTCGGACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS GCA 72 bp AGCCCACTGTGCGAGCTGAACCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCCAGCGAGGCTCGGGAG +
Preference number: 6 (lower is better)
Translates to: SPLCELNHLGAM*RGRASASEARE
Trigger: CTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCACAGTGGGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS CAA 90 bp GCCCAGGTACAGCATCCCGTCTCTATGGTGACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGCATAGGTGGAGTCCGACGTGGACCC +
Preference number: 6 (lower is better)
Translates to: AQVQHPVSMVTAAGL*VTIAVGIGGVRRGP
Trigger: GGGTCCACGTCGGACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACCATAGAGACGGGATGCTGTACCTGGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS GCA 72 bp CTCTATGGTGACCGCCGCCGGTCTCTTGGTAACCATTaGCGTGGGCATAGGTGGAGTCCGACGTGGACCCTC +
Preference number: 6 (lower is better)
Translates to: LYGDRRRSLGNH*RGHRWSPTWTL
Trigger: GAGGGTCCACGTCGGACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACCATAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS GCA 72 bp TCATCACTGTGCGAGCTGAACCACCTGGGTGCGATGTaGAGAGGTAGAGCATCCGCCAGCGAGGCTCGGGAG +
Preference number: 6 (lower is better)
Translates to: SSLCELNHLGAM*RGRASASEARE
Trigger: CTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCACAGTGATGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171182.8
ENSMUST00000173726.8
CDS CAA 72 bp CAGCATCCCGTCTCTATGGTGACCGCCGCCGGTCTCTaGGTAACCATTGCCGTGGGCATAGGTGGAGTCCGA +
Preference number: 6 (lower is better)
Translates to: QHPVSMVTAAGL*VTIAVGIGGVR
Trigger: TCGGACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACCATAGAGACGGGATGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095176.12
ENSMUST00000168428.8
ENSMUST00000171182.8
ENSMUST00000172856.8
ENSMUST00000173506.8
CDS CAA 90 bp CTCTACCTCTTTACCGCCCCAATCTTTTCTTGTATCTTTCCAGTCTaGATTCAGCACCAACAGCCCACTGTGCGAGCTGAACCACCTGGG +
Preference number: 6 (lower is better)
Translates to: LYLFTAPIFSCIFPV*IQHQQPTVRAEPPG
Trigger: CCCAGGTGGTTCAGCTCGCACAGTGGGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGTAAAGAGGTAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS TCA 72 bp CATCGGAAGCCACAGACTTGGAACAAATGGGGCACTTaGAACCTGTTTTCCTGTAGAAGTCTCTGCCAGGCC +
Preference number: 6 (lower is better)
Translates to: HRKPQTWNKWGT*NLFSCRSLCQA
Trigger: GGCCTGGCAGAGACTTCTACAGGAAAACAGGTTTCAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166859.8
ENSMUST00000174333.8
CDS TCA 72 bp TTACCGCCCCAATCTTTTCTTGTATCTTTCCAGTCTTaGTTCAGCACCAACAGCCCACTGTGCGAGCTGAAC +
Preference number: 6 (lower is better)
Translates to: LPPQSFLVSFQS*FSTNSPLCELN
Trigger: GTTCAGCTCGCACAGTGGGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS CAA 72 bp TTTACCGCCCCAATCTTTTCTTGTATCTTTCCAGTCTaGATTCAGCACCAACAGCCCACTGTGCGAGCTGAA +
Preference number: 6 (lower is better)
Translates to: FTAPIFSCIFPV*IQHQQPTVRAE
Trigger: TTCAGCTCGCACAGTGGGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS CAA 72 bp AGACGGACTCTACCTCTTTACCGCCCCAATCTTTTCTaGTATCTTTCCAGTCTTGATTCAGCACCAACAGCC +
Preference number: 6 (lower is better)
Translates to: RRTLPLYRPNLF*YLSSLDSAPTA
Trigger: GGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGTAAAGAGGTAGAGTCCGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174376.8
CDS CAA 72 bp AGACGGACTCTACCTCTTTACCGCCCCAATCTTTTCTaGTATCTTTCCAGTCTTGATTCAGCACCAACAGCN +
Preference number: 6 (lower is better)
Translates to: RRTLPLYRPNLF*YLSSLDSAPTA
Trigger: NGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGTAAAGAGGTAGAGTCCGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173922.2