Pregenerated sensors for ZNHIT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020526Ensembl transcript IDs: ENSMUST00000103195.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTAGGAGTTTTCCCTGTACATATGGCTATGCACATGCATACAGTAAAGACTGTCCAGCAGCAGGTAACTTaGGCAGAGAACACATCCAGT | + |
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Preference number: 2 (lower is better) Translates to: VGVFPVHMAMHMHTVKTVQQQVT*AENTSS Trigger: ACTGGATGTGTTCTCTGCTCAAGTTACCTGCTGCTG...GACAGTCTTTACTGTATGCATGTGCATAGCCATATGTACAGGGAAAACTCCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| 3UTR-3UTR TCA 90 bp | TGTAGGAGTTTTCCCTGTACATATGGCTATGCACATGCATACAGTAAAGACTGTCAAGTTTCCTCTTCATaGAGTTGCTGCAGCGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: CRSFPCTYGYAHAYSKDCQVSSS*SCCSEP Trigger: TGGCTCGCTGCAGCAACTTCATGAAGAGGAAACTTG...ACAGTCTTTACTGTATGCATGTGCATAGCCATATGTACAGGGAAAACTCCTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| 3UTR-3UTR CAA 90 bp | GCTGCAGCGAGCCATGTGGTAGAGGAAGACCCACGTGTGCATGCTGCGTATGGTGCAGCAGCAGGTAACTaGAGCAGAGAACACATCCAG | + |
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Preference number: 3 (lower is better) Translates to: AAASHVVEEDPRVHAAYGAAAGN*SREHIQ Trigger: CTGGATGTGTTCTCTGCTCAAGTTACCTGCTGCTGC...ACCATACGCAGCATGCACACGTGGGTCTTCCTCTACCACATGGCTCGCTGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| 3UTR CCA 72 bp | ATTACAGTTGTAAGTAGTCAAATAGGTGCTGAAAACTaGGGTCCTCTGGAAAAGCAGTCAATGCTCCTAACT | + |
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Preference number: 3 (lower is better) Translates to: ITVVSSQIGAEN*GPLEKQSMLLT Trigger: AGTTAGGAGCATTGACTGCTTTTCCAGAGGACCCCAGTTTTCAGCACCTATTTGACTACTTACAACTGTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR GCA 90 bp | GCGAGCCATGTGGTAGAGGAAGACCCACGTGTGCATGCTGCGTATGGTGGCCTTCCTCACAGGAGGCCCTaGTCTTCTCTTCTCAACAGG | + |
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Preference number: 4 (lower is better) Translates to: ASHVVEEDPRVHAAYGGLPHRRP*SSLLNR Trigger: CCTGTTGAGAAGAGAAGAGCAGGGCCTCCTGTGAGG...AAGGCCACCATACGCAGCATGCACACGTGGGTCTTCCTCTACCACATGGCTCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR TCA 90 bp | GGCTACAAGTTTCCTCTTCATGAAGTTGCTGCAGCGAGCCATGTGGTAGAGGAATGCTCTTTGTGCTTCTaGAAACAGGGGACCGAACAG | + |
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Preference number: 4 (lower is better) Translates to: GYKFPLHEVAAASHVVEECSLCF*KQGTEQ Trigger: CTGTTCGGTCCCCTGTTTTCAGAAGCACAAAGAGCA...TTCCTCTACCACATGGCTCGCTGCAGCAACTTCATGAAGAGGAAACTTGTAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR TCA 90 bp | GGCTACAAGTTTCCTCTTCATGAAGTTGCTGCAGCGAGCCATGTGGTAGAGGAACTTCCTCATCACTGTTaGGGAAATCAGCTACGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GYKFPLHEVAAASHVVEELPHHC*GNQLRR Trigger: CCTCCGTAGCTGATTTCCTCAACAGTGATGAGGAAG...TTCCTCTACCACATGGCTCGCTGCAGCAACTTCATGAAGAGGAAACTTGTAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR CCA 90 bp | TGTAGGAGTTTTCCCTGTACATATGGCTATGCACATGCATACAGTAAAGACTGTCAACTGCCTCAGGTGTaGGTTCAGCAGCAAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: CRSFPCTYGYAHAYSKDCQLPQV*VQQQAS Trigger: AGAAGCTTGCTGCTGAACCCACACCTGAGGCAGTTG...ACAGTCTTTACTGTATGCATGTGCATAGCCATATGTACAGGGAAAACTCCTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR GCA 90 bp | GTAGGAGTTTTCCCTGTACATATGGCTATGCACATGCATACAGTAAAGACTGTCAGGAGTCATCATCTTTaGTCTCCTCAGACCTCACAG | + |
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Preference number: 4 (lower is better) Translates to: VGVFPVHMAMHMHTVKTVRSHHL*SPQTSQ Trigger: CTGTGAGGTCTGAGGAGAGCAAAGATGATGACTCCT...GACAGTCTTTACTGTATGCATGTGCATAGCCATATGTACAGGGAAAACTCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR GCA 90 bp | TGTAGGAGTTTTCCCTGTACATATGGCTATGCACATGCATACAGTAAAGACTGTAGGCTAATCATCAACTaGCTCAGGTGTGGGTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CRSFPCTYGYAHAYSKDCRLIIN*LRCGFS Trigger: GCTGAACCCACACCTGAGGCAGTTGATGATTAGCCT...ACAGTCTTTACTGTATGCATGTGCATAGCCATATGTACAGGGAAAACTCCTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS TCA 90 bp | GGCTCCTGCATACAGGCTCGCATCAGCTTTGCTTTGTTGTCACCCTaGTCGAGGCTAATCATCAACTGCCTCAGGTGTGGGTTCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: GSCIQARISFALLSP*SRLIINCLRCGFSS Trigger: GCTGCTGAACCCACACCTGAGGCAGTTGATGATTAGCCTCGATCAGGGTGACAACAAAGCAAAGCTGATGCGAGCCTGTATGCAGGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS GCA 90 bp | AAACTCCACGAAAAGGGGCTCCTGCATACAGGCTCGCATCAGCTTTaGTTTGTTGTCACCCTGATCGAGGCTAATCATCAACTGCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: KLHEKGLLHTGSHQL*FVVTLIEANHQLPQ Trigger: CTGAGGCAGTTGATGATTAGCCTCGATCAGGGTGACAACAAAGCAAAGCTGATGCGAGCCTGTATGCAGGAGCCCCTTTTCGTGGAGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS-3UTR CAA 90 bp | GGCTACAAGTTTCCTCTTCATGAAGTTGCTGCAGCGAGCCATGTGGTAGAGGAATCTTCCTCATCACTGTaGAGGAAATCAGCTACGGAG | + |
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Preference number: 5 (lower is better) Translates to: GYKFPLHEVAAASHVVEESSSSL*RKSATE Trigger: CTCCGTAGCTGATTTCCTCAACAGTGATGAGGAAGA...TTCCTCTACCACATGGCTCGCTGCAGCAACTTCATGAAGAGGAAACTTGTAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS TCA 90 bp | TCTTTAAATTCTGCAGAGACACTCTGTCTTCTTCCTCATCACTGTTaGGGAAATCAGCTACGGAGGAGTCATCATCTTTGCTCTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: SLNSAETLCLLPHHC*GNQLRRSHHLCSPQ Trigger: CTGAGGAGAGCAAAGATGATGACTCCTCCGTAGCTGATTTCCTCAACAGTGATGAGGAAGAAGACAGAGTGTCTCTGCAGAATTTAAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS GCA 72 bp | CTGCTCTTCTCTTCTCAACAGGTCGGGCTTCAGAGCTaGACTGCTCTTTGTGCTTCTGAAAACAGGGGACCG | + |
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Preference number: 6 (lower is better) Translates to: LLFSSQQVGLQS*TALCASENRGP Trigger: CGGTCCCCTGTTTTCAGAAGCACAAAGAGCAGTGCAGCTCTGAAGCCCGACCTGTTGAGAAGAGAAGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS CAA 72 bp | CTGTTGAGGAAATCAGCTACGGAGGAGTCATCATCTTaGCTCTCCTCAGACCTCACAGGAGGCCCTGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LLRKSATEESSS*LSSDLTGGPAL Trigger: AAGAGCAGGGCCTCCTGTGAGGTCTGAGGAGAGCAAAGATGATGACTCCTCCGTAGCTGATTTCCTCAACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS CAA 90 bp | TCCTCATCACTGTTGAGGAAATCAGCTACGGAGGAGTCATCATCTTaGCTCTCCTCAGACCTCACAGGAGGCCCTGCTCTTCTCTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: SSSLLRKSATEESSS*LSSDLTGGPALLFS Trigger: TGAGAAGAGAAGAGCAGGGCCTCCTGTGAGGTCTGAGGAGAGCAAAGATGATGACTCCTCCGTAGCTGATTTCCTCAACAGTGATGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS TCA 72 bp | ATACAGGCTCGCATCAGCTTTGCTTTGTTGTCACCCTaGTCGAGGCTAATCATCAACTGCCTCAGGTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: IQARISFALLSP*SRLIINCLRCG Trigger: CCCACACCTGAGGCAGTTGATGATTAGCCTCGATCAGGGTGACAACAAAGCAAAGCTGATGCGAGCCTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS GCA 72 bp | GAAAAGGGGCTCCTGCATACAGGCTCGCATCAGCTTTaGTTTGTTGTCACCCTGATCGAGGCTAATCATCAA | + |
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Preference number: 6 (lower is better) Translates to: EKGLLHTGSHQL*FVVTLIEANHQ Trigger: TTGATGATTAGCCTCGATCAGGGTGACAACAAAGCAAAGCTGATGCGAGCCTGTATGCAGGAGCCCCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS GCA 72 bp | AAACAGCAGTCTGCAAACTCCACGAAAAGGGGCTCCTaGATACAGGCTCGCATCAGCTTTGCTTTGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: KQQSANSTKRGS*IQARISFALLS Trigger: TGACAACAAAGCAAAGCTGATGCGAGCCTGTATGCAGGAGCCCCTTTTCGTGGAGTTTGCAGACTGCTGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS CAA 72 bp | TTCTGCAGAGACACTCTGTCTTCTTCCTCATCACTGTaGAGGAAATCAGCTACGGAGGAGTCATCATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: FCRDTLSSSSSL*RKSATEESSSL Trigger: CAAAGATGATGACTCCTCCGTAGCTGATTTCCTCAACAGTGATGAGGAAGAAGACAGAGTGTCTCTGCAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS CAA 90 bp | TTCTTTAAATTCTGCAGAGACACTCTGTCTTCTTCCTCATCACTGTaGAGGAAATCAGCTACGGAGGAGTCATCATCTTTGCTCTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: FFKFCRDTLSSSSSL*RKSATEESSSLLSS Trigger: TGAGGAGAGCAAAGATGATGACTCCTCCGTAGCTGATTTCCTCAACAGTGATGAGGAAGAAGACAGAGTGTCTCTGCAGAATTTAAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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| CDS GCA 72 bp | CTTAAAGTTTCCGATTCACCTAGATTCTTTAAATTCTaGAGAGACACTCTGTCTTCTTCCTCATCACTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LKVSDSPRFFKF*RDTLSSSSSLL Trigger: CAACAGTGATGAGGAAGAAGACAGAGTGTCTCTGCAGAATTTAAAGAATCTAGGTGAATCGGAAACTTTAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103195.5 |
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