RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZMYND8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039671

Ensembl transcript IDs: ENSMUST00000018050.14, ENSMUST00000088113.11, ENSMUST00000099084.9, ENSMUST00000109262.8, ENSMUST00000109266.11, ENSMUST00000109269.8, ENSMUST00000136842.2, ENSMUST00000153655.8, ENSMUST00000170272.8, ENSMUST00000177633.8

Found 1293 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGGGTCTAGGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTaGGGCGACAGTGGCTCCCTCCCCTGGGTATCCAAGGACAAGGGC +
Preference number: 1 (lower is better)
Translates to: AGLGQHSLRAPILVC*GDSGSLPWVSKDKG
Trigger: GCCCTTGTCCTTGGATACCCAGGGGAGGGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCCTAGACCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 90 bp GTGGCGGGTCTAGGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTaGTGCGGCGACAGTGGCTCCCTCCCCTGGGTATCCAAGGACAAG +
Preference number: 1 (lower is better)
Translates to: VAGLGQHSLRAPILV*CGDSGSLPWVSKDK
Trigger: CTTGTCCTTGGATACCCAGGGGAGGGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCCTAGACCCGCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 90 bp GCTCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTaGCATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTGGGGA +
Preference number: 1 (lower is better)
Translates to: ALTVASSPAGFVAGH*HPLLRMAPPGLPWG
Trigger: TCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCAC +
Preference number: 1 (lower is better)
Translates to: RDSLGMRFFVLVPPL*SERDDARFSSLLLH
Trigger: GTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR CCA 90 bp TTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATaGAGTCAAGTCTCTGTCCTGCAGCCAAGCCGACGGGCAGAGCCT +
Preference number: 1 (lower is better)
Translates to: LAHRVVPSQPRPELG*SQVSVLQPSRRAEP
Trigger: AGGCTCTGCCCGTCGGCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 90 bp GGCCATTGCCATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTaGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGG +
Preference number: 1 (lower is better)
Translates to: GHCHPLLRMAPPGLP*GLSPSSVGSGGACR
Trigger: CCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATGGCAATGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR TCA 90 bp CATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCT +
Preference number: 1 (lower is better)
Translates to: HEVLRAGPSTVLRAG*RSLLLAAAPQTCLA
Trigger: AGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR GCA 90 bp ACACTGCCCCAGTGCTCCTGTCCTACTGTGGGTCCTGACTCCTTGTaGTCTCAACAGAGCTTACACATAGGGGAGGCTCGGCGTAGCCAG +
Preference number: 1 (lower is better)
Translates to: TLPQCSCPTVGPDSL*SQQSLHIGEARRSQ
Trigger: CTGGCTACGCCGAGCCTCCCCTATGTGTAAGCTCTGTTGAGAGCACAAGGAGTCAGGACCCACAGTAGGACAGGAGCACTGGGGCAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR CCA 90 bp GTTTGTGGCCGGCCATTGCCATCCGCTTCTAAGAATGGCCCCACCTaGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGG +
Preference number: 1 (lower is better)
Translates to: VCGRPLPSASKNGPT*PSLGTISLICGIWW
Trigger: CCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATGGCAATGGCCGGCCACAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 90 bp TTTGGGCTGTTTCTCCCGCCTATAGGGAGGTGTTCTGGCTCACAATaGACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACT +
Preference number: 1 (lower is better)
Translates to: FGLFLPPIGRCSGSQ*TPSPRRHLAETPGT
Trigger: AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACACCTCCCTATAGGCGGGAGAAACAGCCCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR GCA 90 bp CATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTaGAGCCAAGCCGACGGGCAGAGCCTGAGTGTTGGAAATTCTAAA +
Preference number: 1 (lower is better)
Translates to: HPSQDQSWDGVKSLS*SQADGQSLSVGNSK
Trigger: TTTAGAATTTCCAACACTCAGGCTCTGCCCGTCGGCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 90 bp TTTAATGGGGCAGCTGTGGTGGGGTACACCTGTAAGCCCAGCCCGTaGAAGAGGGAGATGGGAGGATCTTCCTGCCAAGAACATTCCTTA +
Preference number: 1 (lower is better)
Translates to: FNGAAVVGYTCKPSP*KREMGGSSCQEHSL
Trigger: TAAGGAATGTTCTTGGCAGGAAGATCCTCCCATCTCCCTCTTCCACGGGCTGGGCTTACAGGTGTACCCCACCACAGCTGCCCCATTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 90 bp CAGCACTTTAGAGATCACCAGGAAAAAGAATTCCATGGTCAACACTaGCCCAGTGCTCCTGTCCTACTGTGGGTCCTGACTCCTTGTGCT +
Preference number: 1 (lower is better)
Translates to: QHFRDHQEKEFHGQH*PSAPVLLWVLTPCA
Trigger: AGCACAAGGAGTCAGGACCCACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTGATCTCTAAAGTGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR TCA 90 bp CTTCGTGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTaGGAAGCACGTCTTCACAAATCCATGTGGGTGTTATGGGAAAAA +
Preference number: 1 (lower is better)
Translates to: LRGLAVHLCFLSPCF*EARLHKSMWVLWEK
Trigger: TTTTTCCCATAACACCCACATGGATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCACGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR TCA 90 bp ATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATCTaGCTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTA +
Preference number: 1 (lower is better)
Translates to: IPATTWWLTTIRNKI*LPLLVCLKTATVYL
Trigger: TAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR CCA 90 bp TGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTaGCTTTCTCTCACACTGCCTGTGTTTCATGCTTACATAAAAACG +
Preference number: 1 (lower is better)
Translates to: WNYSRRSVNGQHVGS*LSLTLPVFHAYIKT
Trigger: CGTTTTTATGTAAGCATGAAACACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 90 bp TCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATaGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCC +
Preference number: 1 (lower is better)
Translates to: SPFASIDARFTQHTK*NYSRRSVNGQHVGS
Trigger: GGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 90 bp ACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGTTTCATaGTTACATAAAAACGTAGAACTCCAGCAGATAAATAATACATAC +
Preference number: 1 (lower is better)
Translates to: TACRVLAFSHTACVS*LHKNVELQQINNTY
Trigger: GTATGTATTATTTATCTGCTGGAGTTCTACGTTTTTATGTAAGCATGAAACACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CAA 90 bp GGCTCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATaGCCATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTGGGG +
Preference number: 2 (lower is better)
Translates to: GSDSGLEPCRVCGRP*PSASKNGPTWPSLG
Trigger: CCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR CCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTAGACCAGAGCTGGGATaGAGTCAAGTCTCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: MLHPRAGVGFVASPCTFARPELG*SQVSVL
Trigger: CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCT...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTTGCTTCCTGTGGTTTaGGCTGTTTCTCCCGCCTAT +
Preference number: 2 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSLLPVV*AVSPAY
Trigger: ATAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTTCTGTTGCTTCCTGTaGTTTGGGCTGTTTCTCCCG +
Preference number: 2 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSFCCFL*FGLFLP
Trigger: CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp TCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGCCATCCGCTAAGAATGGCCCCACCTaGCCTTCCTTGGGGACTATC +
Preference number: 2 (lower is better)
Translates to: SDSGLEPCRVCGRPLPSAKNGPT*PSLGTI
Trigger: GATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTT...AGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR GCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGCCAATCCTGGTGTGCTaGGGCGACAGTGGCTCCCTC +
Preference number: 2 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVPILVC*GDSGSL
Trigger: GAGGGAGCCACTGTCGCCGCAGCACACCAGGATTGG...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCAGTGGCTCCCTCCCCTaGGTATCCAAGGACAAGGGC +
Preference number: 2 (lower is better)
Translates to: QNGTTADVALTDSMSGPGSGSLP*VSKDKG
Trigger: GCCCTTGTCCTTGGATACCCAGGGGAGGGAGCCACT...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR TCA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGGCTTTCGGGGGCTGGTaGGATGGCTCAGTGGGTAAG +
Preference number: 2 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLAFGGW*DGSVGK
Trigger: CTTACCCACTGAGCCATCTCACCAGCCCCCGAAAGC...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR CCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGTTCGGGAGCCAGAGCTaGAAACACACCACACACACA +
Preference number: 2 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVFGSQS*KHTTHT
Trigger: TGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAA...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGACCGACGGGCAGAGCCTaGGTGTTGGAAATTCTAAAG +
Preference number: 2 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGPTGRA*VLEILK
Trigger: CTTTAGAATTTCCAACACTCAGGCTCTGCCCGTCGG...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR TCA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTTGCTGCGAACAGCCATaGGGCTCTGACAGTGGCCTC +
Preference number: 2 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCCCEQP*GSDSGL
Trigger: GAGGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCA...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR GCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGCTCGCCGTGCACCTTTaGTTTTTGAGTCCTTGCTTC +
Preference number: 2 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVLAVHL*FLSPCF
Trigger: GAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAG...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATCCACCTGGCCTTCCTTaGGGACTATCTCCCTCATCT +
Preference number: 2 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDPPGLP*GLSPSS
Trigger: AGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR TCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCCGACGGGCAGAGCCTaGGTGTTGGAAATTCTAAAG +
Preference number: 2 (lower is better)
Translates to: QNGTTADVALTDSMSGPGPTGRA*VLEILK
Trigger: CTTTAGAATTTCCAACACTCAGGCTCTGCCCGTCGG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR GCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCCCAATCCTGGTGTGCTaGGGCGACAGTGGCTCCCTC +
Preference number: 2 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVPILVC*GDSGSL
Trigger: GAGGGAGCCACTGTCGCCGCAGCACACCAGGATTGG...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCAGCCAAGACCAGAGCTaGGATGGAGTCAAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: QNGTTADVALTDSMSGPGSQDQS*DGVKSL
Trigger: CAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCT...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR TCA 90 bp CAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGAAAAAGAATTCCATGGTCTGGAAAAGCCAGCCCTaGAGGAGGCAAGGGGGATCA +
Preference number: 2 (lower is better)
Translates to: QILAASTLEITRKKNSMVWKSQP*RRQGGS
Trigger: TGATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCA...GACCATGGAATTCTTTTTCCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR GCA 90 bp CTCCATTGCATCTCTTCTCAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGTTCCATGGTCAACACTaGCCCAGTGCTCCTGTCCTA +
Preference number: 2 (lower is better)
Translates to: LHCISSQILAASTLEITRFHGQH*PSAPVL
Trigger: TAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAA...CCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTGAGAAGAGATGCAATGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR CCA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTTATCTCCCTCATCTGTaGGATCTGGTGGTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCYLPHL*DLVVPA
Trigger: GGCAGGCACCACCAGATCCCACAGATGAGGGAGATA...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTTGCTTCCTGTGGTTTaGGCTGTTTCTCCCGCCTAT +
Preference number: 2 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTLLPVV*AVSPAY
Trigger: ATAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATaGAGTCAAGTCTCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPRPELG*SQVSVL
Trigger: CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCT...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGAGACCAGAGCTGGGATaGAGTCAAGTCTCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQRPELG*SQVSVL
Trigger: CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR TCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCCCGACGGGCAGAGCCTaGGTGTTGGAAATTCTAAAG +
Preference number: 2 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIPTGRA*VLEILK
Trigger: CTTTAGAATTTCCAACACTCAGGCTCTGCCCGTCGG...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCAGACCAGAGCTGGGATaGAGTCAAGTCTCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIRPELG*SQVSVL
Trigger: CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCT...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR TCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACCGACGGGCAGAGCCTaGGTGTTGGAAATTCTAAAG +
Preference number: 2 (lower is better)
Translates to: CRYEKERYARSVTSQVYLPTGRA*VLEILK
Trigger: CTTTAGAATTTCCAACACTCAGGCTCTGCCCGTCGG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTTGCTTCCTGTGGTTTaGGCTGTTTCTCCCGCCTAT +
Preference number: 2 (lower is better)
Translates to: QCRYEKERYARSVTSQVYLLPVV*AVSPAY
Trigger: ATAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTTCTGTTGCTTCCTGTaGTTTGGGCTGTTTCTCCCG +
Preference number: 2 (lower is better)
Translates to: QCRYEKERYARSVTSQVYFCCFL*FGLFLP
Trigger: CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAAGACCAGAGCTGGGATaGAGTCAAGTCTCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: CRYEKERYARSVTSQVYLRPELG*SQVSVL
Trigger: CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCACTGCCTGTGTTTCATaGTTACATAAAAACGTAGAA +
Preference number: 2 (lower is better)
Translates to: QNGTTADVALTDSMSGPGTACVS*LHKNVE
Trigger: TTCTACGTTTTTATGTAAGCATGAAACACAGGCAGT...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 72 bp CTAGGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTaGTGCGGCGACAGTGGCTCCCTCCCCTGGGTATCC +
Preference number: 3 (lower is better)
Translates to: LGQHSLRAPILV*CGDSGSLPWVS
Trigger: GGATACCCAGGGGAGGGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCCTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 72 bp CCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTaGCTCCCTCCCCTGGGTATCCAAGGACAAGGGCCT +
Preference number: 3 (lower is better)
Translates to: PESPNPGVLRRQ*LPPLGIQGQGP
Trigger: AGGCCCTTGTCCTTGGATACCCAGGGGAGGGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR TCA 72 bp GAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTaGCAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCG +
Preference number: 3 (lower is better)
Translates to: ESRALLRTAMRL*QWPRALQGLWP
Trigger: CGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR TCA 72 bp CTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCTGCTGCTCCACAAACC +
Preference number: 3 (lower is better)
Translates to: LRAGPSTVLRAG*RSLLLAAAPQT
Trigger: GGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR CCA 72 bp ACATCGTCTTGTAGGGTCTGTGAGGGGCGGATGGCTTaGTGTGGCGGGTCTAGGGCAGCACAGCCTGAGAGC +
Preference number: 3 (lower is better)
Translates to: TSSCRVCEGRMA*CGGSRAAQPES
Trigger: GCTCTCAGGCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTACAAGACGATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 72 bp TGTGCTCAGAGCGGGATGACGCTCGCTTCTCCTCGCTaGTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAT +
Preference number: 3 (lower is better)
Translates to: CAQSGMTLASPR*CSTNLPCCSGN
Trigger: ATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR GCA 72 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCTCGCTTCTCCTCGCTG +
Preference number: 3 (lower is better)
Translates to: LGMRFFVLVPPL*SERDDARFSSL
Trigger: CAGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR GCA 72 bp CAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTaGAGCCAAGCCGACGGGCAGAGCCTGAGTGTTGGA +
Preference number: 3 (lower is better)
Translates to: QDQSWDGVKSLS*SQADGQSLSVG
Trigger: TCCAACACTCAGGCTCTGCCCGTCGGCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 72 bp ATCCTGGTGTGCTGCGGCGACAGTGGCTCCCTCCCCTaGGTATCCAAGGACAAGGGCCTACGTGAAAATAGC +
Preference number: 3 (lower is better)
Translates to: ILVCCGDSGSLP*VSKDKGLRENS
Trigger: GCTATTTTCACGTAGGCCCTTGTCCTTGGATACCCAGGGGAGGGAGCCACTGTCGCCGCAGCACACCAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 72 bp CGGCCATTGCCATCCGCTTCTAAGAATGGCCCCACCTaGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGG +
Preference number: 3 (lower is better)
Translates to: RPLPSASKNGPT*PSLGTISLICG
Trigger: CCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATGGCAATGGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR TCA 72 bp GAAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATaGGGCTCTGACAGTGGCCTCGAGCCCTGCAGGGTT +
Preference number: 3 (lower is better)
Translates to: EEKSQGHCCEQP*GSDSGLEPCRV
Trigger: AACCCTGCAGGGCTCGAGGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 72 bp AGCTCGCGTGGACCTTCTGTAAACAGGAGGCTGCTTTaGCCCTTCGGGAGCCAGAGCTGGAAACACACCACA +
Preference number: 3 (lower is better)
Translates to: SSRGPSVNRRLL*PFGSQSWKHTT
Trigger: TGTGGTGTGTTTCCAGCTCTGGCTCCCGAAGGGGCAAAGCAGCCTCCTGTTTACAGAAGGTCCACGCGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGTTGCTTCCTGTGGTTaGGGCTGTTTCTCCCGCCTA +
Preference number: 3 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCVASCG*GCFSRL
Trigger: TAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAAC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR TCA 72 bp AGTCTCTGTCCTGCAGCCAAGCCGACGGGCAGAGCCTaGGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAG +
Preference number: 3 (lower is better)
Translates to: SLCPAAKPTGRA*VLEILKVAVLQ
Trigger: CTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAGGCTCTGCCCGTCGGCTTGGCTGCAGGACAGAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 72 bp CAGTGCTCCTGTCCTACTGTGGGTCCTGACTCCTTGTaGTCTCAACAGAGCTTACACATAGGGGAGGCTCGG +
Preference number: 3 (lower is better)
Translates to: QCSCPTVGPDSL*SQQSLHIGEAR
Trigger: CCGAGCCTCCCCTATGTGTAAGCTCTGTTGAGAGCACAAGGAGTCAGGACCCACAGTAGGACAGGAGCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR CCA 72 bp CATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTaGGGACTATCTCCCTCATCTGTGGGATCTGGTGGT +
Preference number: 3 (lower is better)
Translates to: HPLLRMAPPGLP*GLSPSSVGSGG
Trigger: ACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR CCA 72 bp GCTAACTTCAAGCAGGTTTTAATGGGGCAGCTGTGGTaGGGTACACCTGTAAGCCCAGCCCGTGGAAGAGGG +
Preference number: 3 (lower is better)
Translates to: ANFKQVLMGQLW*GTPVSPARGRG
Trigger: CCCTCTTCCACGGGCTGGGCTTACAGGTGTACCCCACCACAGCTGCCCCATTAAAACCTGCTTGAAGTTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR CAA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGCCCACCTGGCCTTCCTaGGGGACTATCTCCCTCATC +
Preference number: 3 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLPTWPS*GTISLI
Trigger: GATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGG...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 72 bp TTTCTCCCGCCTATAGGGAGGTGTTCTGGCTCACAATaGACCCCTAGTCCCAGAAGGCATCTAGCCGAGACT +
Preference number: 3 (lower is better)
Translates to: FLPPIGRCSGSQ*TPSPRRHLAET
Trigger: AGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACACCTCCCTATAGGCGGGAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
3UTR CCA 72 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTaGGCTGTTTCTCCCGCCTATAGGGAGGTGTTCTGG +
Preference number: 3 (lower is better)
Translates to: VAVLQFLLLPVV*AVSPAYREVFW
Trigger: CCAGAACACCTCCCTATAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR TCA 72 bp AACACTGCCCCAGTGCTCCTGTCCTACTGTGGGTCCTaGCTCCTTGTGCTCTCAACAGAGCTTACACATAGG +
Preference number: 3 (lower is better)
Translates to: NTAPVLLSYCGS*LLVLSTELTHR
Trigger: CCTATGTGTAAGCTCTGTTGAGAGCACAAGGAGTCAGGACCCACAGTAGGACAGGAGCACTGGGGCAGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 72 bp CCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTaGTCCTGTCCTACTGTGGGTCCTGACTCCTTGTGC +
Preference number: 3 (lower is better)
Translates to: PGKRIPWSTLPQ*SCPTVGPDSLC
Trigger: GCACAAGGAGTCAGGACCCACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR CCA 72 bp AACAGGAGGCTGCTTTGCCCCTTCGGGAGCCAGAGCTaGAAACACACCACACACACATACTTCTCTCTGTGT +
Preference number: 3 (lower is better)
Translates to: NRRLLCPFGSQS*KHTTHTYFSLC
Trigger: ACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAGGGGCAAAGCAGCCTCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGTTGCTTCCTGTGGTTaGGGCTGTTTCTCCCGCCTA +
Preference number: 3 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTVASCG*GCFSRL
Trigger: TAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAAC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CAA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTCCCACCTGGCCTTCCTaGGGGACTATCTCCCTCATC +
Preference number: 3 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMAPTWPS*GTISLI
Trigger: GATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGG...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR GCA 72 bp AGAGATCACCAGGAAAAAGAATTCCATGGTCAACACTaGCCCAGTGCTCCTGTCCTACTGTGGGTCCTGACT +
Preference number: 3 (lower is better)
Translates to: RDHQEKEFHGQH*PSAPVLLWVLT
Trigger: AGTCAGGACCCACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTGATCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR-3UTR CAA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGGCAATTAGAGACCAGTaGTTGTCTCCAAACTACGAC +
Preference number: 3 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLAIRDQ*LSPNYD
Trigger: GTCGTAGTTTGGAGACAACAACTGGTCTCTAATTGC...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
3UTR TCA 72 bp CTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTaGGAAGCACGTCTTCACAAATCCATGTGGGTGTTA +
Preference number: 3 (lower is better)
Translates to: LAVHLCFLSPCF*EARLHKSMWVL
Trigger: TAACACCCACATGGATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CAA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCGTTCTCCAGTTTCTGTaGCTTCCTGTGGTTTGGGCT +
Preference number: 3 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVVLQFL*LPVVWA
Trigger: AGCCCAAACCACAGGAAGCAACAGAAACTGGAGAAC...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGTTGCTTCCTGTGGTTaGGGCTGTTTCTCCCGCCTA +
Preference number: 3 (lower is better)
Translates to: IHTSPFASIDARFTQHTKVASCG*GCFSRL
Trigger: TAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAAC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CCA 72 bp GCTTCGATCGATGCTCGCTTTACACAACATACAAAATaGAACTACAGCAGACGTAGCGTTAACGGACAGCAT +
Preference number: 3 (lower is better)
Translates to: ASIDARFTQHTK*NYSRRSVNGQH
Trigger: ATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR GCA 72 bp CGGGTCCTGGCTTTCTCTCACACTGCCTGTGTTTCATaGTTACATAAAAACGTAGAACTCCAGCAGATAAAT +
Preference number: 3 (lower is better)
Translates to: RVLAFSHTACVS*LHKNVELQQIN
Trigger: ATTTATCTGCTGGAGTTCTACGTTTTTATGTAAGCATGAAACACAGGCAGTGTGAGAGAAAGCCAGGACCCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGTTCTCCAGTTTCTGTaGCTTCCTGTGGTTTGGGCT +
Preference number: 3 (lower is better)
Translates to: IHTSPFASIDARFTQHTKVLQFL*LPVVWA
Trigger: AGCCCAAACCACAGGAAGCAACAGAAACTGGAGAAC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR TCA 72 bp AGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTaGCGTCACAAGTGTACCTACTTACACCTAAAGTGT +
Preference number: 3 (lower is better)
Translates to: SVDMKRKGTLGQ*RHKCTYLHLKC
Trigger: ACACTTTAGGTGTAAGTAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTGGCGGCGGCCACGGTaGCCCCAGCCGCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSWRRPR*PQPRVL
Trigger: AAGCACCCGCGGCTGGGGTCACCGTGGCCGCCGCCA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSERDGG*LLLDRL
Trigger: GAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGGCGGCGGCCACGGTaGCCCCAGCCGCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGWRRPR*PQPRVL
Trigger: AAGCACCCGCGGCTGGGGTCACCGTGGCCGCCGCCA...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTGGCGGCGGCCACGGTaGCCCCAGCCGCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAWRRPR*PQPRVL
Trigger: AAGCACCCGCGGCTGGGGTCACCGTGGCCGCCGCCA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTGGCGGCGGCCACGGTaGCCCCAGCCGCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCWRRPR*PQPRVL
Trigger: AAGCACCCGCGGCTGGGGTCACCGTGGCCGCCGCCA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFACPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHDKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCACTGCTGACCAGGGCTaGCGGCTGTGTGCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSTADQG*RLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGT...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCAGGAATGTGGAGGGCTaGGGAACCTCCGTTTCGGGG +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSRNVEG*GTSVSG
Trigger: CCCCGAAACGGAGGTTCCCCAGCCCTCCACATTCCT...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGCCAGCCGCGGGTGCTTaGGTGGCTGAGCGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMPAAGA*VAERVS
Trigger: ACTCACCCGCTCAGCCACCCAAGCACCCGCGGCTGG...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTCTGGGCTGGGTAGTTaGGGTGCGGCTGGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSSGLGS*GAAGGL
Trigger: CAGACCACCAGCCGCACCCCAACTACCCAGCCCAGA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGACTCCTCGCTTGCGCTaGAGTGGCTGGACGGGGCCT +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMTPRLR*SGWTGP
Trigger: AGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGT...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACCGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGCGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: NGPTWPSLGTISLICGIWRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...CCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSFHTTR*TAGTVS
Trigger: GGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSSSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSVLLRL*AGLVLG
Trigger: GCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGAC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSDVDGL*VTSFCW
Trigger: CCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACGGGGCAGTCGCCGACTaGGTACAGGACTTCATGTGC +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHGAVAD*VQDFMC
Trigger: GCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCC...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCAGGAGGGCGTCTCTCTaGAGCCGGAAAGATCCAGGG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSRRASL*SRKDPG
Trigger: CCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCT...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSCRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTC +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGERDGG*LLLDRL
Trigger: GAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTC...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGTGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPARTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCCGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPARTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGCCATCCGCTGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SDSGLEPCRVCGRPLPSAGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...AGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFACAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSSGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCCAGCCGCGGGTGCTTaGGTGGCTGAGCGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSPAAGA*VAERVS
Trigger: ACTCACCCGCTCAGCCACCCAAGCACCCGCGGCTGG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTT +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSDGGRG*ALGDLL
Trigger: AAGGAGGTCACCCAGAGCCCATCCACGTCCACCATC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTC +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAERDGG*LLLDRL
Trigger: GAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCERDGG*LLLDRL
Trigger: GAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTGGCGGCGGCCACGGTaGCCCCAGCCGCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTWRRPR*PQPRVL
Trigger: AAGCACCCGCGGCTGGGGTCACCGTGGCCGCCGCCA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCACAGCCTGTCTGGTCTaGTATCTCGTCCCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSTACLV*YLVPWE
Trigger: TTCCCAGGGGACGAGATATCAGACCAGACAGGCTGT...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099084.9
CDS-3UTR GCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLRECPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSETGADC*WTDSLS
Trigger: GCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGT...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTACTGCTGACCAGGGCTaGCGGCTGTGTGCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTTADQG*RLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGT...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGGCTTGCCTCGGCATCTaGTTCCTGCTGAGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMACLGI*FLLRGS
Trigger: ACTGCCCCTCAGCAGGAAGCAGATGCCGAGGCAAGC...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCACCAGGGACGCCAGAATaGACCAAGTGGCCTCCTACC +
Preference number: 4 (lower is better)
Translates to: PWGLSPSSVGSGGACRLAPGTPE*TKWPPT
Trigger: GGTAGGAGGCCACTTGGTGCATTCTGGCGTCCCTGG...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLREAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLREGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSCAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCACCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: PWGLSPSSVGSGGACRLAPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCCCAGCCGCGGGTGCTTaGGTGGCTGAGCGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAPAAGA*VAERVS
Trigger: ACTCACCCGCTCAGCCACCCAAGCACCCGCGGCTGG...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCAGGAGGGCGTCTCTCTaGAGCCGGAAAGATCCAGGG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSRRASL*SRKDPG
Trigger: CCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCT...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFAVVCSG*GIGRLL
Trigger: AAGCAGCCTGCCTATACCCCAACCACTACAGACCAC...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPERDGG*LLLDRL
Trigger: GAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFASSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp ATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGCTCGCTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: MRFFVLVPPLCSERDDARWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFAAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSDKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSEDKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLREMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSSSGSG*SRWWRW
Trigger: CCACCTCCACCACCGGGAGCATCCTGAACCTGAACT...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCTGADC*WTDSLS
Trigger: GCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPATGADC*WTDSLS
Trigger: GCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCAAATGGCCTCCTTCTTaGAGTTGGCACACCACTGCT +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSKWPPS*SWHTTA
Trigger: AGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTT...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGCCATGAGGCTCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: SHEALTVASSPAGFVAGHCAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...ATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGAGCCTCATGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCTCAGGCTCTGGGCTaGCCTTGTCCTTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGSQALG*PCPWRV
Trigger: CACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGA...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTVLLRL*AGLVLG
Trigger: GCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGAC...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCAGCCGCGGGTGCTTaGGTGGCTGAGCGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPPAAGA*VAERVS
Trigger: ACTCACCCGCTCAGCCACCCAAGCACCCGCGGCTGG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGGGGGCAGTCGCCGACTaGGTACAGGACTTCATGTGC +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLGAVAD*VQDFMC
Trigger: GCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCC...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHVVCSG*GIGRLL
Trigger: AAGCAGCCTGCCTATACCCCAACCACTACAGACCAC...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCTTTGTGGGATGAGGTaGTGGCTTTGCTTTCTCTAC +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSLCGMR*WLCFLY
Trigger: GTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTGGCGGCGGCCACGGTaGCCCCAGCCGCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQWRRPR*PQPRVL
Trigger: AAGCACCCGCGGCTGGGGTCACCGTGGCCGCCGCCA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSFSPRQ*ADPAPV
Trigger: AACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAA...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLVLRAG*RSLLLA
Trigger: AGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCAC...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCATCTCCCAACTGGGGCTaGCCTGTGCTCTTATCAAGG +
Preference number: 4 (lower is better)
Translates to: PWGLSPSSVGSGGACRLASPNWG*PVLLSR
Trigger: CCTTGATAAGAGCACAGGTCAGCCCCAGTTGGGAGA...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCDKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPADKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTACTGCTGACCAGGGCTaGCGGCTGTGTGCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCTADQG*RLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGACTGCTGACCAGGGCTaGCGGCTGTGTGCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLTADQG*RLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSSSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGSSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGCTTGCCTCGGCATCTaGTTCCTGCTGAGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSACLGI*FLLRGS
Trigger: ACTGCCCCTCAGCAGGAAGCAGATGCCGAGGCAAGC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSLVPPL*SERDDA
Trigger: AGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GAATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGCCAGGGACGCCAGAATaGACCAAGTGGCCTCCTACC +
Preference number: 4 (lower is better)
Translates to: EWPHLAFLGDYLPHLWDLPGTPE*TKWPPT
Trigger: GGTAGGAGGCCACTTGGTGCATTCTGGCGTCCCTGG...CAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACAGGAATGTGGAGGGCTaGGGAACCTCCGTTTCGGGG +
Preference number: 4 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDRNVEG*GTSVSG
Trigger: CCCCGAAACGGAGGTTCCCCAGCCCTCCACATTCCT...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp AATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGAGGAATGTGGAGGGCTaGGGAACCTCCGTTTCGGGG +
Preference number: 4 (lower is better)
Translates to: NGPTWPSLGTISLICGIWRNVEG*GTSVSG
Trigger: CCCCGAAACGGAGGTTCCCCAGCCCTCCACATTCCT...CCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMCAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSVLLRL*AGLVLG
Trigger: GCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGAC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTCCAGCCGCGGGTGCTTaGGTGGCTGAGCGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSPAAGA*VAERVS
Trigger: ACTCACCCGCTCAGCCACCCAAGCACCCGCGGCTGG...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGDVDGL*VTSFCW
Trigger: CCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTC...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLRETTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGGGGCAGTCGCCGACTaGGTACAGGACTTCATGTGC +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSGAVAD*VQDFMC
Trigger: GCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCAGGAGGGCGTCTCTCTaGAGCCGGAAAGATCCAGGG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSRRASL*SRKDPG
Trigger: CCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCT...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATCTGGGCTGGGTAGTTaGGGTGCGGCTGGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASGLGS*GAAGGL
Trigger: CAGACCACCAGCCGCACCCCAACTACCCAGCCCAGA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGTCTGGGCTGGGTAGTTaGGGTGCGGCTGGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVSGLGS*GAAGGL
Trigger: CAGACCACCAGCCGCACCCCAACTACCCAGCCCAGA...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
3UTR CAA 72 bp TCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTaGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTG +
Preference number: 4 (lower is better)
Translates to: SQKASSRDSRDS*GMRFFVLVPPL
Trigger: CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTTGTCCTTTGTGGGATaGGGTGATGGCTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSLSFVG*GDGFAF
Trigger: GAAAGCAAAGCCATCACCTCATCCCACAAAGGACAA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPVLRAG*RSLLLA
Trigger: AGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCAC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGVLRAG*RSLLLA
Trigger: AGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCAC...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGCCATCCGCTGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: SDSGLEPCRVCGRPLPSAVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...AGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp AATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGCGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: NGPTWPSLGTISLICGIWRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...CCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCACGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTCGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTTGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFACLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDFHTTR*TAGTVS
Trigger: GGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAA...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATTCCACACGACCCGCTaGACAGCTGGGACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAFHTTR*TAGTVS
Trigger: GGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPASSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDVSSTA*CFSSSS
Trigger: ACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGAC...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCTCGCTTCTCCTCGCTaGTGCTCCACAAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSLASPR*CSTNLP
Trigger: AGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCCTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPALVPPL*SERDDA
Trigger: AGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAG...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTAGGAATGTGGAGGGCTaGGGAACCTCCGTTTCGGGG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCRNVEG*GTSVSG
Trigger: CCCCGAAACGGAGGTTCCCCAGCCCTCCACATTCCT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCAGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: PWGLSPSSVGSGGACRLAESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCACCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: HPLLRMAPPGLPWGLSPSPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...TGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCDVDGL*VTSFCW
Trigger: CCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGGGGCAGTCGCCGACTaGGTACAGGACTTCATGTGC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCGAVAD*VQDFMC
Trigger: GCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTCTGGGCTGGGTAGTTaGGGTGCGGCTGGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMSGLGS*GAAGGL
Trigger: CAGACCACCAGCCGCACCCCAACTACCCAGCCCAGA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPACRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTTGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: SQCTPSPRRHLAETPGTLCRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...AAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPACRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGTTCTGGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCCTTCTGCTGGACAGTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: CSGSQCTPSPRRHLAETPLLLDS*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAG...GGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGCTTCTGCTGGACAGTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVLLLDS*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAG...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCTTCTGCTGGACAGTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCLLLDS*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAG...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTTTGCTAACAGAGCTTTaGTTGGAGCCTAAGAGCATA +
Preference number: 4 (lower is better)
Translates to: MLHPRAGVGFVASPCTFALLTEL*LEPKSI
Trigger: TATGCTCTTAGGCTCCAATCAAAGCTCTGTTAGCAA...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGACAGTGGCCTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: KKRVKGTAANSHEALTVACPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...GGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGACATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPASSGSG*SRWWRW
Trigger: CCACCTCCACCACCGGGAGCATCCTGAACCTGAACT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASSGSG*SRWWRW
Trigger: CCACCTCCACCACCGGGAGCATCCTGAACCTGAACT...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTTGADC*WTDSLS
Trigger: GCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGT...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMFHTTR*TAGTVS
Trigger: GGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGSSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGCTTGCCTCGGCATCTaGTTCCTGCTGAGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMACLGI*FLLRGS
Trigger: ACTGCCCCTCAGCAGGAAGCAGATGCCGAGGCAAGC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGCTCGCTTCTCCTCGCTaGTGCTCCACAAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVLASPR*CSTNLP
Trigger: AGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAG...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: PPGLPWGLSPSSVGSGGAWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...GGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSCAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCCCGGTGGTGGAGGTaGAAGTCTTGTCGGGTTTTG +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGSRWWR*KSCRVL
Trigger: CAAAACCCGACAAGACTTCCACCTCCACCACCGGGA...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGSGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSSGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPVLLRL*AGLVLG
Trigger: GCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGAC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGGTGACCTCCTTCTGCTaGACAGTTGATGCGTTCCAC +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLVTSFC*TVDAFH
Trigger: GTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCAC...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPDVDGL*VTSFCW
Trigger: CCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTT +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDDGGRG*ALGDLL
Trigger: AAGGAGGTCACCCAGAGCCCATCCACGTCCACCATC...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLREGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGCRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLSSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCTTCTGCTGGACAGTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPLLLDS*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVFSPRQ*ADPAPV
Trigger: AACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAA...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAFSPRQ*ADPAPV
Trigger: AACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCACAGCCTGTCTGGTCTaGTATCTCGTCCCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPATACLV*YLVPWE
Trigger: TTCCCAGGGGACGAGATATCAGACCAGACAGGCTGT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp CCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: PPGLPWGLSPSSVGSGGAVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...GGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp ATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGCTCGCGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: MRFFVLVPPLCSERDDARAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCACCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: PWGLSPSSVGSGGACRLAPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDCPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSCPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGACGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTDKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGA +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSENRLRI*RLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTT...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: DARFSSLLLHKPALLLRECWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTGGGTGACCTCCTTCTaGTGGACAGCTTTCACAGCC +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLWVTSF*WTAFTA
Trigger: GGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCACCCA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCAAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: HPLLRMAPPGLPWGLSPSKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...TGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTCCCGGTGGTGGAGGTaGAAGTCTTGTCGGGTTTTG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLSRWWR*KSCRVL
Trigger: CAAAACCCGACAAGACTTCCACCTCCACCACCGGGA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTCCCGGTGGTGGAGGTaGAAGTCTTGTCGGGTTTTG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPASRWWR*KSCRVL
Trigger: CAAAACCCGACAAGACTTCCACCTCCACCACCGGGA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTCTCAGGCTCTGGGCTaGCCTTGTCCTTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTSQALG*PCPWRV
Trigger: CACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLTTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCTTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAATGGTACTTCTGGGCTaGGTAGTTGGGGTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGMVLLG*VVGVRL
Trigger: CAGCCGCACCCCAACTACCCAGCCCAGAAGTACCAT...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGCRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTC +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCERDGG*LLLDRL
Trigger: GAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTTGTGGGATGAGGTaGTGGCTTTGCTTTCTCTAC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTLCGMR*WLCFLY
Trigger: GTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAG...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATCATTCCGTCCGTCCTaGGGTACAACATCAACAGGG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASFRPS*GTTSTG
Trigger: CCCTGTTGATGTTGTACCGCAGGACGGACGGAATGA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCCGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTC +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCGTGAD*CWTDSL
Trigger: GAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGA +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCNRLRI*RLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGA +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLNRLRI*RLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTVSSTA*CFSSSS
Trigger: ACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGAC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGAAATGGCCTCCTTCTTaGAGTTGGCACACCACTGCT +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSEKWPPS*SWHTTA
Trigger: AGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTT...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTLVPPL*SERDDA
Trigger: AGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCTCTGCTGTTGGCTCTaGTGTTGTTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCLCCWL*CCCCCC
Trigger: GCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAG...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTGGGTGACCTCCTTCTaGTGGACAGCTTTCACAGCC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPWVTSF*WTAFTA
Trigger: GGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCACCCA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: SQCTPSPRRHLAETPGTLWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...AAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCGTCTTGGTGGAGGCTaGAGAAGCTGTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDRLGGG*RSCALI
Trigger: GATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACG...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACGTCTTGGTGGAGGCTaGAGAAGCTGTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPARLGGG*RSCALI
Trigger: GATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATCCCGGTGGTGGAGGTaGAAGTCTTGTCGGGTTTTG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGSRWWR*KSCRVL
Trigger: CAAAACCCGACAAGACTTCCACCTCCACCACCGGGA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCCAGCCGCGGGTGCTTaGGTGGCTGAGCGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLPAAGA*VAERVS
Trigger: ACTCACCCGCTCAGCCACCCAAGCACCCGCGGCTGG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGGTGACCTCCTTCTGCTaGACAGTTGATGCGTTCCAC +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVVTSFC*TVDAFH
Trigger: GTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCAC...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTT +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGDGGRG*ALGDLL
Trigger: AAGGAGGTCACCCAGAGCCCATCCACGTCCACCATC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCTCATCGTCCCCTTTATaGCATCCATCATTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSSSSPL*HPSFCW
Trigger: CCAGCAAAATGATGGATGCCATAAAGGGGACGATGA...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp ATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGCTCGCCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: MRFFVLVPPLCSERDDARLLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPTTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGACCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAVVCSG*GIGRLL
Trigger: AAGCAGCCTGCCTATACCCCAACCACTACAGACCAC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACAACAGGGTCTGTGGTaGGTGGCTGCTTCATATAGT +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAQQGLW*VAASYS
Trigger: ACTATATGAAGCAGCCACTCACCACAGACCCTGTTG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR TCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGACTCCTCGCTTGCGCTaGAGTGGCTGGACGGGGCCT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLTPRLR*SGWTGP
Trigger: AGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGT...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPASSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTTGTCCTTTGTGGGATaGGGTGATGGCTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSLSFVG*GDGFAF
Trigger: GAAAGCAAAGCCATCACCTCATCCCACAAAGGACAA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGTTGTCCTTTGTGGGATaGGGTGATGGCTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSELSFVG*GDGFAF
Trigger: GAAAGCAAAGCCATCACCTCATCCCACAAAGGACAA...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp TGTTCTGGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: CSGSQCTPSPRRHLAETPPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...GGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGGGAGTTGCCCTGCGATaGCTTATTTCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSEGVALR*LISCFC
Trigger: ACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCC...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR TCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQVLRAG*RSLLLA
Trigger: AGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCAC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACGGACAGGGAGATCCTaGGGCCGGCACCCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLRTGRS*GRHPRS
Trigger: TGAGCGGGGGTGCCGGCCGCAGGATCTCCCTGTCCG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGTGATGAGAAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: RDEKKRVKGTAANSHEALTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...CAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTTCTCATCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGG +
Preference number: 4 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCHGLLA*AEVAGR
Trigger: CCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATG...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVTGADC*WTDSLS
Trigger: GCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGT...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTTGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTCLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPVSSTA*CFSSSS
Trigger: ACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGAC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGAAATGGCCTCCTTCTTaGAGTTGGCACACCACTGCT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLKWPPS*SWHTTA
Trigger: AGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGCTTGCCTCGGCATCTaGTTCCTGCTGAGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPACLGI*FLLRGS
Trigger: ACTGCCCCTCAGCAGGAAGCAGATGCCGAGGCAAGC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCTCGCTTCTCCTCGCTaGTGCTCCACAAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTLASPR*CSTNLP
Trigger: AGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPLVPPL*SERDDA
Trigger: AGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAG...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTCCCTCCACCACCTCCTaGTCGGTTTTTATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SQCTPSPRRHLAETPGTLPSTTS*SVFISS
Trigger: AGAGGAAATAAAAACCGAGCAGGAGGTGGTGGAGGG...AAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGCCCTCCACCACCTCCTaGTCGGTTTTTATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVPSTTS*SVFISS
Trigger: AGAGGAAATAAAAACCGAGCAGGAGGTGGTGGAGGG...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTGGCGCTGTATCTTCTaGATGTGCCACTTTTGGGAG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAWRCIF*MCHFWE
Trigger: CTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLRTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: PPGLPWGLSPSSVGSGGARTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...GGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: PPGLPWGLSPSSVGSGGAECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...GGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCGTCTTGGTGGAGGCTaGAGAAGCTGTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPRLGGG*RSCALI
Trigger: GATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGACGTCTTGGTGGAGGCTaGAGAAGCTGTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGRLGGG*RSCALI
Trigger: GATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACG...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTCTCAGGCTCTGGGCTaGCCTTGTCCTTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQSQALG*PCPWRV
Trigger: CACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPVLLRL*AGLVLG
Trigger: GCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGAC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGTGACCTCCTTCTGCTaGACAGTTGATGCGTTCCAC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPVTSFC*TVDAFH
Trigger: GTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCAC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTDGGRG*ALGDLL
Trigger: AAGGAGGTCACCCAGAGCCCATCCACGTCCACCATC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSLLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAAGGAGGGCGTCTCTCTaGAGCCGGAAAGATCCAGGG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPRRASL*SRKDPG
Trigger: CCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTCTGGGCTGGGTAGTTaGGGTGCGGCTGGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQSGLGS*GAAGGL
Trigger: CAGACCACCAGCCGCACCCCAACTACCCAGCCCAGA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACTTTCACAGCCTGTCTaGTCTGATATCTCGTCCCCT +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPALSQPV*SDISSP
Trigger: AGGGGACGAGATATCAGACCAGACAGGCTGTGAAAG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR TCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTFSPRQ*ADPAPV
Trigger: AACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGTGCTCAGAGCGGGATaGCGCTCGCTTCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWVLRAG*RSLLLA
Trigger: AGCGAGGAGAAGCGAGCGTCATCCCGCTCTGAGCAC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCGTTTGAAACTTACTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPRLKLT*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR TCA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTCTCCCAACTGGGGCTaGCCTGTGCTCTTATCAAGG +
Preference number: 4 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLSPNWG*PVLLSR
Trigger: CCTTGATAAGAGCACAGGTCAGCCCCAGTTGGGAGA...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATCCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCACCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: HPLLRMAPPGLPWGLSPSPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...TGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGCCATCCGCTATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: SDSGLEPCRVCGRPLPSAISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...AGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQCPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCACGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLDKLPA*PVLVEA
Trigger: AGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGA +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGNRLRI*RLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTT...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGACTGCTGACCAGGGCTaGCGGCTGTGTGCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWTADQG*RLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGT...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCCWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATTTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQVSSTA*CFSSSS
Trigger: ACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGAC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGAAATGGCCTCCTTCTTaGAGTTGGCACACCACTGCT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPKWPPS*SWHTTA
Trigger: AGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTATTTCCTGTTTCTGTaGTTGCCTCGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSYFLFL*LPRHLL
Trigger: AAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGTTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSELEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSLEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACTCGCTTCTCCTCGCTaGTGCTCCACAAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPLASPR*CSTNLP
Trigger: AGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAG...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCTGGTCCCTCCACTGTaGTCAGAGCGGGATGACGCT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQLVPPL*SERDDA
Trigger: AGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGAGGAATGTGGAGGGCTaGGGAACCTCCGTTTCGGGG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQRNVEG*GTSVSG
Trigger: CCCCGAAACGGAGGTTCCCCAGCCCTCCACATTCCT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGACAGTGGCCAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: KKRVKGTAANSHEALTVARVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...GGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: NGPTWPSLGTISLICGIWVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...CCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCGTCTTGGTGGAGGCTaGAGAAGCTGTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGRLGGG*RSCALI
Trigger: GATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCTCAGGCTCTGGGCTaGCCTTGTCCTTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSQALG*PCPWRV
Trigger: CACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTCTCAGGCTCTGGGCTaGCCTTGTCCTTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVSQALG*PCPWRV
Trigger: CACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGTGACCTCCTTCTGCTaGACAGTTGATGCGTTCCAC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGVTSFC*TVDAFH
Trigger: GTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCAC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPDGGRG*ALGDLL
Trigger: AAGGAGGTCACCCAGAGCCCATCCACGTCCACCATC...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLLLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPALLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGGGGCAGTCGCCGACTaGGTACAGGACTTCATGTGC +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQGAVAD*VQDFMC
Trigger: GCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCAPLSL*GRWPVL
Trigger: CAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTCTGGGCTGGGTAGTTaGGGTGCGGCTGGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLSGLGS*GAAGGL
Trigger: CAGACCACCAGCCGCACCCCAACTACCCAGCCCAGA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAATGGTACTTCTGGGCTaGGTAGTTGGGGTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPMVLLG*VVGVRL
Trigger: CAGCCGCACCCCAACTACCCAGCCCAGAAGTACCAT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSSSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTTTGTGGGATGAGGTaGTGGCTTTGCTTTCTCTAC +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLCGMR*WLCFLY
Trigger: GTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATTGTCCTTTGTGGGATaGGGTGATGGCTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGLSFVG*GDGFAF
Trigger: GAAAGCAAAGCCATCACCTCATCCCACAAAGGACAA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTGGATGGGCTCTGGGTaGCCTCCTTCTGCTGGACAG +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWWMGSG*PPSAGQ
Trigger: CTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGCATCTGCTTCCTGCTaGGGGGCAGTCGCCGACTGG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLASASC*GAVADW
Trigger: CCAGTCGGCGACTGCCCCTCAGCAGGAAGCAGATGC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGGAGTTGCCCTGCGATaGCTTATTTCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMGVALR*LISCFC
Trigger: ACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGGAGTTGCCCTGCGATaGCTTATTTCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPGVALR*LISCFC
Trigger: ACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAGGAGTTGCCCTGCGATaGCTTATTTCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGGVALR*LISCFC
Trigger: ACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCC...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGACGTCTCGATGCATTCTaGTACTGTAATCTTCTCACA +
Preference number: 4 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGRLDAF*YCNLLT
Trigger: TGTGAGAAGATTACAGTAGCAGAATGCATCGAGACG...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCCPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQMGVGA*GEKGFG
Trigger: CCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCAT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQSSGSG*SRWWRW
Trigger: CCACCTCCACCACCGGGAGCATCCTGAACCTGAACT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPACLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCFHTTR*TAGTVS
Trigger: GGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGCWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVVSSTA*CFSSSS
Trigger: ACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGAC...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWVSSTA*CFSSSS
Trigger: ACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGAC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCTTGCCTCGGCATCTaGTTCCTGCTGAGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLACLGI*FLLRGS
Trigger: ACTGCCCCTCAGCAGGAAGCAGATGCCGAGGCAAGC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGCTTGCCTCGGCATCTaGTTCCTGCTGAGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCACLGI*FLLRGS
Trigger: ACTGCCCCTCAGCAGGAAGCAGATGCCGAGGCAAGC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATTATTTCCTGTTTCTGTaGTTGCCTCGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDYFLFL*LPRHLL
Trigger: AAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATA...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTATTTCCTGTTTCTGTaGTTGCCTCGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAYFLFL*LPRHLL
Trigger: AAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCLEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPALEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATCCCTCCACCACCTCCTaGTCGGTTTTTATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDPSTTS*SVFISS
Trigger: AGAGGAAATAAAAACCGAGCAGGAGGTGGTGGAGGG...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTGTATCTTCTGCATGTaGCACTTTTGGGAGGACGTT +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLCIFCM*HFWEDV
Trigger: AACGTCCTCCCAAAAGTGGCACATGCAGAAGATACA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATGTTGCTGCTGCTGCTaGTGGCGCTGTATCTTCTGC +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPCCCCC*WRCIFC
Trigger: GCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTGTTGTTGCTGCTGCTaGTGCTGGCGCTGTATCTTC +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTCCCCC*CWRCIF
Trigger: GAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMAAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCAGGGTCTGTGGTGAGTaGCTGCTTCATATAGTAAAA +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSRVCGE*LLHIVK
Trigger: TTTTACTATATGAAGCAGCCACTCACCACAGACCCT...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPCAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSEFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: STLTQRYQKLSFRGLVRWPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...CCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATCCCGGTGGTGGAGGTaGAAGTCTTGTCGGGTTTTG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPSRWWR*KSCRVL
Trigger: CAAAACCCGACAAGACTTCCACCTCCACCACCGGGA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPSGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTTCAGTTTGTCCTTTGTaGGATGAGGTGATGGCTTTG +
Preference number: 4 (lower is better)
Translates to: SQCTPSPRRHLAETPGTLSVCPL*DEVMAL
Trigger: CAAAGCCATCACCTCATCCCACAAAGGACAAACTGA...AAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGTCAGTTTGTCCTTTGTaGGATGAGGTGATGGCTTTG +
Preference number: 4 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVSVCPL*DEVMAL
Trigger: CAAAGCCATCACCTCATCCCACAAAGGACAAACTGA...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLDVDGL*VTSFCW
Trigger: CCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATCATCGTCCCCTTTATaGCATCCATCATTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASSSPL*HPSFCW
Trigger: CCAGCAAAATGATGGATGCCATAAAGGGGACGATGA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPTTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGGGGCAGTCGCCGACTaGGTACAGGACTTCATGTGC +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWGAVAD*VQDFMC
Trigger: GCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLCRVLS*WVSALA
Trigger: CGCAAGCGCCGACACCCATCATGACAAAACCCGACA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCTTTGTGGGATGAGGTaGTGGCTTTGCTTTCTCTAC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGLCGMR*WLCFLY
Trigger: GTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTTGTCCTTTGTGGGATaGGGTGATGGCTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSLSFVG*GDGFAF
Trigger: GAAAGCAAAGCCATCACCTCATCCCACAAAGGACAA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCCTTCTGCTGGACAGTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQILLLDS*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAG...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATGCTGGTCACCAGCGTaGTGGTGGACGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLCWSPA*WWTWMG
Trigger: GCCCATCCACGTCCACCATCACGCTGGTGACCAGCA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQFSPRQ*ADPAPV
Trigger: AACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGGAGTTGCCCTGCGATaGCTTATTTCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSGVALR*LISCFC
Trigger: ACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTTGCTAACAGAGCTTTaGTTGGAGCCTAAGAGCATA +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLLLTEL*LEPKSI
Trigger: TATGCTCTTAGGCTCCAATCAAAGCTCTGTTAGCAA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCGTCTCGATGCATTCTaGTACTGTAATCTTCTCACA +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLRLDAF*YCNLLT
Trigger: TGTGAGAAGATTACAGTAGCAGAATGCATCGAGACG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTCACGTCTAAGTCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: LTSKSTLTQRYQKLSFRGFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...CCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGACTTAGACGTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQISSGSG*SRWWRW
Trigger: CCACCTCCACCACCGGGAGCATCCTGAACCTGAACT...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWSSGSG*SRWWRW
Trigger: CCACCTCCACCACCGGGAGCATCCTGAACCTGAACT...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYFHTTR*TAGTVS
Trigger: GGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGCWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYSSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAAATGGCCTCCTTCTTaGAGTTGGCACACCACTGCT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTKWPPS*SWHTTA
Trigger: AGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTT...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTATTTCCTGTTTCTGTaGTTGCCTCGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPYFLFL*LPRHLL
Trigger: AAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCTCGCTTCTCCTCGCTaGTGCTCCACAAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVLASPR*CSTNLP
Trigger: AGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATGTTGTTGCTGCTGCTaGTGCTGGCGCTGTATCTTC +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPCCCCC*CWRCIF
Trigger: GAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATGTTGTTGTTGCTGCTaGTGCTGCTGGCGCTGTATC +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPCCCCC*CCWRCI
Trigger: GATACAGCGCCAGCAGCAGCAGCAGCAACAACAACA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCAGGGTCTGTGGTGAGTaGCTGCTTCATATAGTAAAA +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPARVCGE*LLHIVK
Trigger: TTTTACTATATGAAGCAGCCACTCACCACAGACCCT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPRTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGRTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGACAGTGGCCAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: KKRVKGTAANSHEALTVARTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...GGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGTGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYPRWGC*DPAAFG
Trigger: ACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGG...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTCACGTCTAAGTCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCCTGTTTGTCTGTCTTaGCTGTGCCCGCGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: LTSKSTLTQRYQKLSFRGPVCLS*LCPRWG
Trigger: ACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGG...CCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGACTTAGACGTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACGTCTTGGTGGAGGCTaGAGAAGCTGTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPRLGGG*RSCALI
Trigger: GATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACG...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYVLLRL*AGLVLG
Trigger: GCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGAC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTCAGTTTGTCCTTTGTaGGATGAGGTGATGGCTTTG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPSVCPL*DEVMAL
Trigger: CAAAGCCATCACCTCATCCCACAAAGGACAAACTGA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGAC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLVSGGD*LPAEVD
Trigger: GTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGAC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYDVDGL*VTSFCW
Trigger: CCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSLLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGLLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYSLWGR*PVLKVL
Trigger: CAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTATGGTACTTCTGGGCTaGGTAGTTGGGGTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVMVLLG*VVGVRL
Trigger: CAGCCGCACCCCAACTACCCAGCCCAGAAGTACCAT...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCATGGTACTTCTGGGCTaGGTAGTTGGGGTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIMVLLG*VVGVRL
Trigger: CAGCCGCACCCCAACTACCCAGCCCAGAAGTACCAT...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGGAGTTGCCCTGCGATaGCTTATTTCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTGVALR*LISCFC
Trigger: ACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATTGCTAACAGAGCTTTaGTTGGAGCCTAAGAGCATA +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGLLTEL*LEPKSI
Trigger: TATGCTCTTAGGCTCCAATCAAAGCTCTGTTAGCAA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTTGCTAACAGAGCTTTaGTTGGAGCCTAAGAGCATA +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLLTEL*LEPKSI
Trigger: TATGCTCTTAGGCTCCAATCAAAGCTCTGTTAGCAA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATTTTGGGAGGACGTTTaGAACTTACTTGATGCGTTC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGFWEDV*NLLDAF
Trigger: GAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR GCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTCACGTCTAAGTCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: LTSKSTLTQRYQKLSFRGAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...CCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGACTTAGACGTGAG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLCPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMATSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTG +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCTSEPV*TEEFVL
Trigger: CAGTACGAACTCTTCCGTGCACACGGGCTCCGATGT...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSCLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTTCTCCAGCTCCAGTTaGTTTTTCACCTCGGCAATG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTFSSSS*FFTSAM
Trigger: CATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLSSTAC*FSSSSC
Trigger: GCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGTACAGGACTTCATGTaGTCGGGCCAGTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLVQDFM*SGQWAC
Trigger: GCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTAC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSLEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTGTTGTTGTTGCTGCTaGTGCTGCTGGCGCTGTATC +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQCCCCC*CCWRCI
Trigger: GATACAGCGCCAGCAGCAGCAGCAGCAACAACAACA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp CTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTGATGGGGAGGCCATTGGAGGAATGTaGAGGGCTGGGGAACCTCCG +
Preference number: 4 (lower is better)
Translates to: LRHKDIKYVPKATSTDGEAIGGM*RAGEPP
Trigger: CGGAGGTTCCCCAGCCCTCCACATTCCTCCAATGGC...CTCCCCATCAGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGRTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GAATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: EWPHLAFLGDYLPHLWDLMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...CAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMACAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTGTGCAGGATCCACTTaGCATCGGCCAGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCCAGST*HRPGRL
Trigger: AAGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: PPGLPWGLSPSSVGSGGACKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...GGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLLAPSW*RLEKLC
Trigger: GCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCTCAGGATGCTCCCGGTaGTGGAGGTGGAAGTCTTGT +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQISGCSR*WRWKSC
Trigger: ACAAGACTTCCACCTCCACCACCGGGAGCATCCTGA...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKGADCC*TDSLSS
Trigger: GGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCCCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCATCGTCCCCTTTATaGCATCCATCATTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSSSSPL*HPSFCW
Trigger: CCAGCAAAATGATGGATGCCATAAAGGGGACGATGA...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCTTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAAGGAGGGCGTCTCTCTaGAGCCGGAAAGATCCAGGG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLRRASL*SRKDPG
Trigger: CCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQVVCSG*GIGRLL
Trigger: AAGCAGCCTGCCTATACCCCAACCACTACAGACCAC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACATGGTACTTCTGGGCTaGGTAGTTGGGGTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYMVLLG*VVGVRL
Trigger: CAGCCGCACCCCAACTACCCAGCCCAGAAGTACCAT...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCACTTTGTGGGATGAGGTaGTGGCTTTGCTTTCTCTAC +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPLCGMR*WLCFLY
Trigger: GTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAG...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATTGTCCTTTGTGGGATaGGGTGATGGCTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPLSFVG*GDGFAF
Trigger: GAAAGCAAAGCCATCACCTCATCCCACAAAGGACAA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYFSPRQ*ADPAPV
Trigger: AACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTTGCTAACAGAGCTTTaGTTGGAGCCTAAGAGCATA +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSLLTEL*LEPKSI
Trigger: TATGCTCTTAGGCTCCAATCAAAGCTCTGTTAGCAA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTCATTCCGTCCGTCCTaGGGTACAACATCAACAGGG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVSFRPS*GTTSTG
Trigger: CCCTGTTGATGTTGTACCGCAGGACGGACGGAATGA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGA +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLNRLRI*RLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTT...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGA +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWNRLRI*RLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTT...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAACTGCTGACCAGGGCTaGCGGCTGTGTGCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKTADQG*RLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGT...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCAGTTGGCACACCACTaGTTCTTCTTGGTCTCGTCC +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLQLAHH*FFLVSS
Trigger: GGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTGGCGCTGTATCTTCTaGATGTGCCACTTTTGGGAG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQWRCIF*MCHFWE
Trigger: CTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTGTTGCTGCTGCTGCTaGTGGCGCTGTATCTTCTGC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYCCCCC*WRCIFC
Trigger: GCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCTCTGCTGTTGGCTCTaGTGTTGTTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVLCCWL*CCCCCC
Trigger: GCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: QNGTTADVALTDSMSGPGFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTCATCGTCCCCTTTATaGCATCCATCATTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTSSSPL*HPSFCW
Trigger: CCAGCAAAATGATGGATGCCATAAAGGGGACGATGA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: LREPELETHHTHILLSVSSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWVVCSG*GIGRLL
Trigger: AAGCAGCCTGCCTATACCCCAACCACTACAGACCAC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTGCTGGCTCTGCTGTTaGCTCTGCTGTTGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLCWLCC*LCCCCC
Trigger: GCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCTGGCTCTGCTGTTaGCTCTGCTGTTGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVCWLCC*LCCCCC
Trigger: GCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGTGACCTCCTTCTGCTaGACAGCTTTCACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCVTSFC*TAFTAC
Trigger: ACAGGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCAC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
3UTR CAA 72 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTaGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTAT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFL*LPVVWAVSPAY
Trigger: ATAGGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCAACAGGGTCTGTGGTaGGTGGCTGCTTCATATAGT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCQQGLW*VAASYS
Trigger: ACTATATGAAGCAGCCACTCACCACAGACCCTGTTG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR TCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCAACAGGGTCTGTGGTaGGTGGCTGCTTCATATAGT +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVQQGLW*VAASYS
Trigger: ACTATATGAAGCAGCCACTCACCACAGACCCTGTTG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR TCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLSSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVSSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCCTCTCCTAAGTCTATaGCAAGTTCGCTCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCPLLSL*QVRSPS
Trigger: ACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCGTTTGAAACTTACTTaGTGCGTTCCACACGACCCG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVRLKLT*CVPHDP
Trigger: CGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTCATTCCGTCCGTCCTaGGGTACAACATCAACAGGG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYSFRPS*GTTSTG
Trigger: CCCTGTTGATGTTGTACCGCAGGACGGACGGAATGA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWVMALL*VSMHSA
Trigger: AGCAGAATGCATCGAGACGCAGAGCAAAGCCATGAC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: STLTQRYQKLSFRGLVRWAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...CCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGTGATGAGAAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: RDEKKRVKGTAANSHEALSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...CAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTTCTCATCACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTT +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKCPRWG*WDPAAF
Trigger: AAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCA...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GGAAGGCTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTGATCGCTCAGAAGGGGCTTaGTCAGAAGGATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GRLRHKDIKYVPKATSTDRSEGA*SEGSWG
Trigger: CCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCG...ATCAGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAGCCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTG +
Preference number: 4 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFFFSGS*STSEPV
Trigger: CACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTAAATGGCCTCCTTCTTaGAGTTGGCACACCACTGCT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCKWPPS*SWHTTA
Trigger: AGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTT...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTGGGGCGAATGGCCATTaGAGGAATGTGGAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFGANGH*RNVEGW
Trigger: CCAGCCCTCCACATTCCTCCAATGGCCATTCGCCCC...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGAGTCTTGGGGCGAATaGCCATTGGAGGAATGTGGA +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYESWGE*PLEECG
Trigger: TCCACATTCCTCCAATGGCCATTCGCCCCAAGACTC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGGGTCTGTGGTGAGTaGCTGCTTCATATAGTAAAA +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTRVCGE*LLHIVK
Trigger: TTTTACTATATGAAGCAGCCACTCACCACAGACCCT...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLKPVPL*LRCQSQ
Trigger: CTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGA +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYWSAWS*LCSASR
Trigger: TCGAGACGCAGAGCAAAGCCATGACCATGCTGACCA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAACCACTGCTTCTTCTTaGTCTCGTCCACCGCCTGCT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLTTASS*SRPPPA
Trigger: AGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCCTCCTTCTTGCAGTTaGCACACCACTGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWPPSCS*HTTASS
Trigger: AGAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGG...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTAGTCACAGTAGCTaGTGTTCCAGCAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCGSHSS*CSSSSR
Trigger: TCTACTGCTGCTGGAACACCAGCTACTGTGACTACC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCTTTCACAGCCTGTCTaGTCTGATATCTCGTCCCCT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCLSQPV*SDISSP
Trigger: AGGGGACGAGATATCAGACCAGACAGGCTGTGAAAG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGTGACCTCCTTCTGCTaGACAGCTTTCACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYVTSFC*TAFTAC
Trigger: ACAGGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCAC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR TCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTCTTCGCTTCCTCTTTaGCCTCTACCTGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYSSLPL*PLPGLW
Trigger: CCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCTTTGTGGGATGAGGTaGTGGCTTTGCTTTCTCTAC +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWLCGMR*WLCFLY
Trigger: GTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAG...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCCCAGGAAGGCTTCTGTaGAGCCGTACATCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIPGRLL*SRTSSF
Trigger: AAAAGAAGATGTACGGCTGCACAGAAGCCTTCCTGG...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFAQTKG*GLLQGS
Trigger: TGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGC...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCTGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQICWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTT +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKDGGRG*ALGDLL
Trigger: AAGGAGGTCACCCAGAGCCCATCCACGTCCACCATC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLLLCSQ*CSWRGH
Trigger: ATGACCTCTCCAAGAACACCACTGGGAGCACAATAG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGCATGGTCATGGCTTTaGTCTGCGTCTCGATGCATT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLAWSWL*SASRCI
Trigger: AATGCATCGAGACGCAGAGCAAAGCCATGACCATGC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCTGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVCLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLESKPK*TVGESV
Trigger: AACGGATTCTCCCACAGTGCACTTGGGCTTGGATTC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYCWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTATTTCCTGTTTCTGTaGTTGCCTCGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWYFLFL*LPRHLL
Trigger: AAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTAGGACAGTTGTTCAATaGTCAGCATGGTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVRTVVQ*SAWSWL
Trigger: AAGCCATGACCATGCTGACCATTGAACAACTGTCCT...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMAECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCGAATGCATCCGTCCCTaGCTGCTTCATTTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVECIRP*LLHFLN
Trigger: ATTCAGAAAATGAAGCAGCCAGGGACGGATGCATTC...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGGGAAGGCTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: VGRLRHKDIKYVPKATSTRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...AGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAGCCTTCCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAACCTCGGGCTCATTCTTaGGCTTCTGTTCCTCATCGC +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKPRAHS*ASVPHR
Trigger: GCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTCAGTTTGTCCTTTGTaGGATGAGGTGATGGCTTTG +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWSVCPL*DEVMAL
Trigger: CAAAGCCATCACCTCATCCCACAAAGGACAAACTGA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTCATCGTCCCCTTTATaGCATCCATCATTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWSSSPL*HPSFCW
Trigger: CCAGCAAAATGATGGATGCCATAAAGGGGACGATGA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR TCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTTTTGGGAGGACGTTTaGAACTTACTTGATGCGTTC +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWFWEDV*NLLDAF
Trigger: GAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR GCA 90 bp ATCACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: ITRKKNSMVNTAPVLLSYFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...GTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYCLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLCWCSH*SFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTGTATCTTCTGCATGTaGCACTTTTGGGAGGACGTT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYCIFCM*HFWEDV
Trigger: AACGTCCTCCCAAAAGTGGCACATGCAGAAGATACA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CCA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CTCACGTCTAAGTCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: LTSKSTLTQRYQKLSFRGVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...CCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGACTTAGACGTGAG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLSLTST*FVGLGF
Trigger: GAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCCATCCATCATTTTGCTaGTGTACTTGGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIHPSFC*CTWQCL
Trigger: CAGACATTGCCAAGTACACCAGCAAAATGATGGATG...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKVVCSG*GIGRLL
Trigger: AAGCAGCCTGCCTATACCCCAACCACTACAGACCAC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMAVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATGCCTAGCTGTGCTTTaGAACTCTCTATGGTCTTGT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLCLAVL*NSLWSC
Trigger: ACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATATTTCCTGTTTCTGTaGTTGCCTCGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLYFLFL*LPRHLL
Trigger: AAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATTGGAGGAGTTGCCCTaGGATGACTTATTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLLEELP*DDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGC +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKRVLLQ*NRLLEC
Trigger: GCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCT...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATCATCGTCCCCTTTATaGCATCCATCATTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLSSSPL*HPSFCW
Trigger: CCAGCAAAATGATGGATGCCATAAAGGGGACGATGA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp CTCACGTCTAAGTCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: LTSKSTLTQRYQKLSFRGVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...CCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGACTTAGACGTGAG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR GCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTTTGATGACGACTTTTaGTATTTGCGTCAACTTGTG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVFDDDF*YLRQLV
Trigger: CACAAGTTGACGCAAATAGCAAAAGTCGTCATCAAA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp TGGGGAGTCCTGCAATTAGAGACCAGTTGTTGTCTCCAAACTACGACACATAGCTGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: WGVLQLETSCCLQTTTHSCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...GCTATGTGTCGTAGTTTGGAGACAACAACTGGTCTCTAATTGCAGGACTCCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTGATGGGGAGTTTCGCTGGCCAGAATaGAAATCCTTTCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: LRHKDIKYVPKATSTDGEFRWPE*KSFQFC
Trigger: GCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAA...CTCCCCATCAGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAAGCAGCAGTAGAAAATaGCCTCCTTCTTGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKSSSRK*PPSCSW
Trigger: CCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCT...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGTGGAAAATATATTCTaGATAGTCAGGGTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: CRYEKERYARSVTSQVYLVENIF*IVRVLL
Trigger: GAGCAACACCCTGACTATGCAGAATATATTTTCCAC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GTGGGAAGGCTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACA +
Preference number: 4 (lower is better)
Translates to: VGRLRHKDIKYVPKATSTSFLAS*KITFWT
Trigger: TGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGA...AGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAGCCTTCCCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACATGTACAAAGGTCCATaGGGTGGAAAATATATTCTG +
Preference number: 4 (lower is better)
Translates to: QCRYEKERYARSVTSQVYMYKGP*GGKYIL
Trigger: CAGAATATATTTTCCACCCCATGGACCTTTGTACAT...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGTAGCAATTATTGACTaGAACCCAGGCTCTGTCATG +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKVAIID*NPGSVM
Trigger: CATGACAGAGCCTGGGTTCCAGTCAATAATTGCTAC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATCAGTTTGTCCTTTGTaGGATGAGGTGATGGCTTTG +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKSVCPL*DEVMAL
Trigger: CAAAGCCATCACCTCATCCCACAAAGGACAAACTGA...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTT +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKSQWCS*RGHCRF
Trigger: AAATCTACAATGACCTCTCCAAGAACACCACTGGGA...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR GCA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTATTTCATTCATCTCGTaGTCACAGATTTTGATGACG +
Preference number: 4 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFISFIS*SQILMT
Trigger: CGTCATCAAAATCTGTGAGCACGAGATGAATGAAAT...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CCA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATGCAAGATAACATTCTaGACAGACTTCGATTTCATT +
Preference number: 4 (lower is better)
Translates to: IHTSPFASIDARFTQHTKCKITF*TDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCA...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp CGGCCTCTGCTTCTTCACCGGGCTTCCCGTGACGGCGGTGGCCGGTaGCGTGACTGTGACGGTAGACATCGTGCTGGTGGTGGCGGCGGC +
Preference number: 5 (lower is better)
Translates to: RPLLLHRASRDGGGR*RDCDGRHRAGGGGG
Trigger: GCCGCCGCCACCACCAGCACGATGTCTACCGTCACAGTCACGGCACCGGCCACCGCCGTCACGGGAAGCCCGGTGAAGAAGCAGAGGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp ACCCGCTGCACAGCTGGGACAGTCTCCTTCGGTAAGAGCGGCCTCTaGTTCTTCACCGGGCTTCCCGTGACGGCGGTGGCCGGTGCCGTG +
Preference number: 5 (lower is better)
Translates to: TRCTAGTVSFGKSGL*FFTGLPVTAVAGAV
Trigger: CACGGCACCGGCCACCGCCGTCACGGGAAGCCCGGTGAAGAAGCAGAGGCCGCTCTTACCGAAGGAGACTGTCCCAGCTGTGCAGCGGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp CCTGCTCCACATCGGAGCCCGTGTGCACGGAAGAGTTCGTACTGGTaGGGGAGCGAGGCATGTCGGACAGGGAGATCCTGCGGCCGGCAC +
Preference number: 5 (lower is better)
Translates to: PAPHRSPCARKSSYW*GSEACRTGRSCGRH
Trigger: GTGCCGGCCGCAGGATCTCCCTGTCCGACATGCCTCGCTCCCCCACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATGTGGAGCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GGTCCTGCTCCACATCGGAGCCCGTGTGCACGGAAGAGTTCGTACTaGTGGGGGAGCGAGGCATGTCGGACAGGGAGATCCTGCGGCCGG +
Preference number: 5 (lower is better)
Translates to: GPAPHRSPCARKSSY*WGSEACRTGRSCGR
Trigger: CCGGCCGCAGGATCTCCCTGTCCGACATGCCTCGCTCCCCCACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATGTGGAGCAGGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: MLHPRAGVGFVASPCTFAPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GCTTGGGTGGCTGAGCGGGTGAGTACCGGTGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGACGACGGTGGCGGTTTACCTATAGCG +
Preference number: 5 (lower is better)
Translates to: AWVAERVSTGVSGGD*LPAEVDDGGGLPIA
Trigger: CGCTATAGGTAAACCGCCACCGTCGTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGACACCGGTACTCACCCGCTCAGCCACCCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAAGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: DARFSSLLLHKPALLLREVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 90 bp CCGGCTTCGAATCTGCCGCTTGGGAGAGATGAGAGGGACGGGGGCTaGCTGCTGCTGGACCGACTCGCTCAGCTCCTTCAGGTCCATCTC +
Preference number: 5 (lower is better)
Translates to: PASNLPLGRDERDGG*LLLDRLAQLLQVHL
Trigger: GAGATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 90 bp GGCAATGGGAAGGTCGGCATTGATTGCAGACGCCAGGGTGCTTGCTaGGCCCGAACTGCTGACCAGGGCTGCCGGCTGTGTGCTGGTCAC +
Preference number: 5 (lower is better)
Translates to: GNGKVGIDCRRQGAC*ARTADQGCRLCAGH
Trigger: GTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGTTCGGGCTCAGCAAGCACCCTGGCGTCTGCAATCAATGCCGACCTTCCCATTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp TCGCTTGCGCTGAAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTGTGCACGGAAGAGTTCGTACTGGTG +
Preference number: 5 (lower is better)
Translates to: SLALKWLDGAFFSGS*STSEPVCTEEFVLV
Trigger: CACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp CGAATCTGCCGCTTGGGAGAGATGAGAGGGACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGCTCCTTCAGGTCCATCTCGGCCTTG +
Preference number: 5 (lower is better)
Translates to: RICRLGEMRGTGADC*WTDSLSSFRSISAL
Trigger: CAAGGCCGAGATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp CTTCGAATCTGCCGCTTGGGAGAGATGAGAGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTCAGCTCCTTCAGGTCCATCTCGGCC +
Preference number: 5 (lower is better)
Translates to: LRICRLGEMRGTGAD*CWTDSLSSFRSISA
Trigger: GGCCGAGATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GGCTGCCGGCTGTGTGCTGGTCACCAGCGTGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTTCTGCTGGACAGCTTTCACAGCCTG +
Preference number: 5 (lower is better)
Translates to: GCRLCAGHQRDGGRG*ALGDLLLLDSFHSL
Trigger: CAGGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCATCACGCTGGTGACCAGCACACAGCCGGCAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CAA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTRQAPG*PRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCT...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: MLHPRAGVGFVASPCTFAASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GGGTTTTGTCATGATGGGTGTCGGCGCTTGCGGAGAGAAAGGCTTTaGGCTGCCAGACAAGCTCCCGGCTTGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: GFCHDGCRRLRRERL*AARQAPGLPRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp ATCTGCCGCTTGGGAGAGATGAGAGGGACGGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCCTTCAGGTCCATCTCGGCCTTGCTT +
Preference number: 5 (lower is better)
Translates to: ICRLGEMRGTGADCC*TDSLSSFRSISALL
Trigger: AAGCAAGGCCGAGATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: MLHPRAGVGFVASPCTFASMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: NGPTWPSLGTISLICGIWVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...CCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSEGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS TCA 90 bp CCTCGGGGTCCTCGGGCTCATTCTTGGGCTTCTGTTCCTCATCGCTaGCGTACTCGCTGTCGCTGCTCTCCGACTTTTCGGAGTCCTCGG +
Preference number: 5 (lower is better)
Translates to: PRGPRAHSWASVPHR*RTRCRCSPTFRSPR
Trigger: CCGAGGACTCCGAAAAGTCGGAGAGCAGCGACAGCGAGTACGTCAGCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGACCCCGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp ATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTaGTCCGGGAATGGTACTTCTGGGCTGGGTAGTTGGGGTGCGGCT +
Preference number: 5 (lower is better)
Translates to: MTLASPRCCSTNLPC*SGNGTSGLGSWGAA
Trigger: AGCCGCACCCCAACTACCCAGCCCAGAAGTACCATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp GGGCTGACCTGTGCTCTTATCAAGGAAGTCCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: GLTCALIKEVHGLLA*AEVAGRGLLLGVLL
Trigger: GAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCACAGGTCAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS CCA 90 bp GGCTGTGTGCTGGTCACCAGCGTGATGGTGGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGGACAGTTGATGCGTTCCACACGACC +
Preference number: 5 (lower is better)
Translates to: GCVLVTSVMVDVDGL*VTSFCWTVDAFHTT
Trigger: GGTCGTGTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCATCACGCTGGTGACCAGCACACAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GGCTGTGTGCTGGTCACCAGCGTGATGGTGGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGGACAGCTTTCACAGCCTGTCTGGTC +
Preference number: 5 (lower is better)
Translates to: GCVLVTSVMVDVDGL*VTSFCWTAFTACLV
Trigger: GACCAGACAGGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCATCACGCTGGTGACCAGCACACAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: DARFSSLLLHKPALLLRELCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACTCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp ATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGCTCGCCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: MRFFVLVPPLCSERDDARPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVRQAPG*PRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCT...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPARQAPG*PRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: LREPELETHHTHILLSVSGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCCGTCCTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSPSCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGGACGG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099084.9
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp GCTTGCGGAGAGAAAGGCTTTGGGCTGCCAGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCTGGAGAAGCTGTGCTCTTATCAAGG +
Preference number: 5 (lower is better)
Translates to: ACGEKGFGLPDKLPA*PVLVEAGEAVLLSR
Trigger: CCTTGATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp CTCTCTATGGTCTTGTCCAGGTTGAGCTGGAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGAGGGACGGGGGCTGACTGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LSMVLSRLSWNRLRI*RLGEMRGTGADCCW
Trigger: CCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp GTGACCTCCTTCTGCTGGACAGTTGATGCGTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCCTTCGGTAAGAGCGGCCTCTGCTTC +
Preference number: 5 (lower is better)
Translates to: VTSFCWTVDAFHTTR*TAGTVSFGKSGLCF
Trigger: GAAGCAGAGGCCGCTCTTACCGAAGGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp CCTTCTCCTGTTTGTCTGTCTTGGCTGTGCCCGCGCTGGGGTTGCTaGGATCCAGCAGCATTTGGTACTGGTTGTTGGGCGTGTAGGGCG +
Preference number: 5 (lower is better)
Translates to: PSPVCLSWLCPRWGC*DPAAFGTGCWACRA
Trigger: CGCCCTACACGCCCAACAACCAGTACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGAGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GTGCTCTTATCAAGGAAGTCCATGGACTCCTCGCTTGCGCTGAAGTaGCTGGACGGGGCCTTCTTCTCGGGGTCCTGCTCCACATCGGAG +
Preference number: 5 (lower is better)
Translates to: VLLSRKSMDSSLALK*LDGAFFSGSCSTSE
Trigger: CTCCGATGTGGAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp TGTCCTTGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTGACTGTGTGTTGGAGGAGTTGCCCT +
Preference number: 5 (lower is better)
Translates to: CPCSSPLAPLSLWGR*PVLKVLTVCWRSCP
Trigger: AGGGCAACTCCTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp CAGGGTTACTGTCCTTGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTGTGTTGGAGG +
Preference number: 5 (lower is better)
Translates to: QGYCPCSSPLAPLSL*GRWPVLKVLTVCWR
Trigger: CCTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AGCCATGAGGCTCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: SHEALTVASSPAGFVAGHLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...ATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGAGCCTCATGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGCTCGCCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: MRFFVLVPPLCSERDDARLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGCACTGCTGCGAACAGCCATGAGGCTCTGACAGTGGCCTCGAGCCCTGCAGGGCCGTCCTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: GTAANSHEALTVASSPAGPSCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGGACGG...CCCTGCAGGGCTCGAGGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCTGCATGTGCCACTTTaGGGAGGACGTTTGAAACTT +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSLHVPL*GGRLKL
Trigger: AAGTTTCAAACGTCCTCCCAAAAGTGGCACATGCAG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099084.9
CDS TCA 90 bp GACCTGTGCTCTTATCAAGGAAGTCCATGGACTCCTCGCTTGCGCTaGAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCTGCTCCACAT +
Preference number: 5 (lower is better)
Translates to: DLCSYQGSPWTPRLR*SGWTGPSSRGPAPH
Trigger: ATGTGGAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCACAGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS GCA 90 bp TGGAGAAGCTGTGCTCTTATCAAGGAAGTCCATGGACTCCTCGCTTaGGCTGAAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: WRSCALIKEVHGLLA*AEVAGRGLLLGVLL
Trigger: GAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCACAGCTTCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp GAGGTGGAAGTCTTGTCGGGTTTTGTCATGATGGGTGTCGGCGCTTaGGGAGAGAAAGGCTTTGGGCTGCCAGACAAGCTCCCGGCTTGC +
Preference number: 5 (lower is better)
Translates to: EVEVLSGFVMMGVGA*GEKGFGLPDKLPAC
Trigger: GCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACTTCCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GCTCCACAAACCTGCCTTGCTGCTCCGGGAATGGTACTTCTGGGCTaGGTAGTTGGGGTGCGGCTGGTGGTCTGTAGTGGTTGGGGTATA +
Preference number: 5 (lower is better)
Translates to: APQTCLAAPGMVLLG*VVGVRLVVCSGWGI
Trigger: TATACCCCAACCACTACAGACCACCAGCCGCACCCCAACTACCCAGCCCAGAAGTACCATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCATTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: PWGLSPSSVGSGGACRLALLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCACCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: LREPELETHHTHILLSVSRQAPG*PRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCT...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp ATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCTTTGCTGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: MLHPRAGVGFVASPCTFADEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...AGCAAAGGTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTTCTGGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCCACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: CSGSQCTPSPRRHLAETPHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...GGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS TCA 90 bp AAGCTGTGCTCTTATCAAGGAAGTCCATGGACTCCTCGCTTGCGCTaGAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCTGCTCCACAT +
Preference number: 5 (lower is better)
Translates to: KLCSYQGSPWTPRLR*SGWTGPSSRGPAPH
Trigger: ATGTGGAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCACAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp TCACCTTCTCCTGTTTGTCTGTCTTGGCTGTGCCCGCGCTGGGGTTaGTGGGATCCAGCAGCATTTGGTACTGGTTGTTGGGCGTGTAGG +
Preference number: 5 (lower is better)
Translates to: SPSPVCLSWLCPRWG*WDPAAFGTGCWACR
Trigger: CCTACACGCCCAACAACCAGTACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGAGAAGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp CCCCTTTATGGCATCCATCATTTTGCTGGTGTACTTGGCAATGTCTaGGGCCACGTCGGCCGAGGCGGTGGCAATGGGAAGGTCGGCATT +
Preference number: 5 (lower is better)
Translates to: PLYGIHHFAGVLGNV*GHVGRGGGNGKVGI
Trigger: AATGCCGACCTTCCCATTGCCACCGCCTCGGCCGACGTGGCCGCAGACATTGCCAAGTACACCAGCAAAATGATGGATGCCATAAAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp GGCTGCTGCTGCTGGCTCTGCTGTTGGCTCTGCTGTTGTTGTTGCTaGTGCTGCTGCTGGCGCTGTATCTTCTGCATGTGCCACTTTTGG +
Preference number: 5 (lower is better)
Translates to: GCCCWLCCWLCCCCC*CCCWRCIFCMCHFW
Trigger: CCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCAGCAGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CCA 90 bp AGTTACTACTGTCCTTGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTGTGTTGGAGG +
Preference number: 5 (lower is better)
Translates to: SYYCPCSSPLAPLSL*GRWPVLKVLTVCWR
Trigger: CCTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAGTAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp CTTCTGGGCTGGGTAGTTGGGGTGCGGCTGGTGGTCTGTAGTGGTTaGGGTATAGGCAGGCTGCTTGTCACACCTCTTGCTAACAGAGCT +
Preference number: 5 (lower is better)
Translates to: LLGWVVGVRLVVCSG*GIGRLLVTPLANRA
Trigger: AGCTCTGTTAGCAAGAGGTGTGACAAGCAGCCTGCCTATACCCCAACCACTACAGACCACCAGCCGCACCCCAACTACCCAGCCCAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTCTGACTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSSDCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGTCAGA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109266.11
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLLCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACATACATGCTCCATCCCCGGGCTGGCGTGGGCTTCGTGGCCTCGCCGTGCACCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: YIHAPSPGWRGLRGLAVHPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...GTGCACGGCGAGGCCACGAAGCCCACGCCAGCCCGGGGATGGAGCATGTATGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: RDSLGMRFFVLVPPLCSESTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...CTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATTCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGMVLSR*SWNRLR
Trigger: TCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAACTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: DARFSSLLLHKPALLLRELLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCCCGTCCTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSPSCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGGACGG...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS TCA 90 bp CAGAATGCACCAAGTGGCCTCCTACCCAACTCTCCCAACTGGGGCTaGCCTGTGCTCTTATCAAGGAAGTCCATGGACTCCTCGCTTGCG +
Preference number: 5 (lower is better)
Translates to: QNAPSGLLPNSPNWG*PVLLSRKSMDSSLA
Trigger: CGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCACAGGTCAGCCCCAGTTGGGAGAGTTGGGTAGGAGGCCACTTGGTGCATTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS GCA 90 bp TTTTTCACCTCGGCAATGAGCCGATCCCGCTCCTGTTCCAGGCTCTaGCGCATCTCGGCCATGGTCAACTCCAGGTTGTGCTTCATCTCA +
Preference number: 5 (lower is better)
Translates to: FFTSAMSRSRSCSRL*RISAMVNSRLCFIS
Trigger: TGAGATGAAGCACAACCTGGAGTTGACCATGGCCGAGATGCGGCAGAGCCTGGAACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp CAGTTGGCACACCACTGCTTCTTCTTGGTCTCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGCTTTTTCACCTCGGCAATGAGCCGA +
Preference number: 5 (lower is better)
Translates to: QLAHHCFFLVSSTAC*FSSSSCFFTSAMSR
Trigger: TCGGCTCATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp TGCTGCTGGCTCTGCTGTTGGCTCTGCTGTTGTTGTTGCTGCTGCTaGTGCTGGCGCTGTATCTTCTGCATGTGCCACTTTTGGGAGGAC +
Preference number: 5 (lower is better)
Translates to: CCWLCCWLCCCCCCC*CWRCIFCMCHFWED
Trigger: GTCCTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 90 bp TGCTGCTGCTGGCTCTGCTGTTGGCTCTGCTGTTGTTGTTGCTGCTaGTGCTGCTGGCGCTGTATCTTCTGCATGTGCCACTTTTGGGAG +
Preference number: 5 (lower is better)
Translates to: CCCWLCCWLCCCCCC*CCWRCIFCMCHFWE
Trigger: CTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CAA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGACTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGGCAGCACAGCCTGAGAGCCCCAATCCTGGTGTGCTGCGGCGACAGTGGCTCCTCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: GQHSLRAPILVCCGDSGSSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...GGAGCCACTGTCGCCGCAGCACACCAGGATTGGGGCTCTCAGGCTGTGCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGCCATCCGCTCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: SDSGLEPCRVCGRPLPSAPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...AGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLSTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPASTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWGSGLA*SLAGVG
Trigger: CCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACATGGTCAACTCCAGGTaGTGCTTCATCTCAGCGAGC +
Preference number: 5 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDMVNSR*CFISAS
Trigger: GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGAAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: LFGHEVLRAGPSTVLRAGKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...TCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS GCA 90 bp TTGCAGTTGGCACACCACTGCTTCTTCTTGGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGTTGCTTTTTCACCTCGGCAATGAGC +
Preference number: 5 (lower is better)
Translates to: LQLAHHCFFLVSSTA*CFSSSSCFFTSAMS
Trigger: GCTCATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp TGCTGGCTCTGCTGTTGGCTCTGCTGTTGTTGTTGCTGCTGCTGCTaGTGGCGCTGTATCTTCTGCATGTGCCACTTTTGGGAGGACGTT +
Preference number: 5 (lower is better)
Translates to: CWLCCWLCCCCCCCC*WRCIFCMCHFWEDV
Trigger: AACGTCCTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CCA 90 bp CCTAGCTGTGCTTTGCAACTCTCTATGGTCTTGTCCAGGTTGAGCTaGAACCGGCTTCGAATCTGCCGCTTGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: PSCALQLSMVLSRLS*NRLRICRLGEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTGCAAAGCACAGCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGAGACTCCCGGGACTCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGGTAGAGACAGGATCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: RDSRDSLGMRFFVLVPPLVETGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGATCCTGTCTCTAC...CAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGGGAGTCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTGATGAGAAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGTTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: RDEKKRVKGTAANSHEALLCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...CAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTTCTCATCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGLCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCTGACAGTGGCCTCGAGCCCTGCAGGGTTTGTGGCCGGCCATTGCCATCCGCTGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: SDSGLEPCRVCGRPLPSADDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...AGCGGATGGCAATGGCCGGCCACAAACCCTGCAGGGCTCGAGGCCACTGTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp GACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAACCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: DARFSSLLLHKPALLLREPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...TTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGGGTCTGTGAGGGGCGGATGGCTTGGTGTGGCGGGTCTAGGGCAGCACAGCTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: VGSVRGGWLGVAGLGQHSSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...GCTGTGCTGCCCTAGACCCGCCACACCAAGCCATCCGCCCCTCACAGACCCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTGCCGGCTCGCAGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: PWGLSPSSVGSGGACRLAVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...TGCGAGCCGGCAGGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: SQCTPSPRRHLAETPGTLFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...AAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: SAIPAKTRAGMESSLCPAFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTCTTTTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: SQCTPSPRRHLAETPGTLLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...AAGAGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGGGACTATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: GSQCTPSPRRHLAETPGTMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...AGTCCCGGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATTCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDSLTGE*LFASSL
Trigger: CAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMDEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GGGATGACGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCATGGCATCCATCATTTaGCTGGTGTACTTGGCAATG +
Preference number: 5 (lower is better)
Translates to: GMTLASPRCCSTNLPCCSMASII*LVYLAM
Trigger: CATTGCCAAGTACACCAGCAAAATGATGGATGCCAT...GGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCGTCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCATGGTCAACTCCAGGTaGTGCTTCATCTCAGCGAGC +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAMVNSR*CFISAS
Trigger: GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 90 bp TGCTGGCGCTGTATCTTCTGCATGTGCCACTTTTGGGAGGACGTTTaGAACTTACTTGATGCGTTCCACACGACCCGCTGCACAGCTGGG +
Preference number: 5 (lower is better)
Translates to: CWRCIFCMCHFWEDV*NLLDAFHTTRCTAG
Trigger: CCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 90 bp GGAACCCAGGCTCTGTCATGTTGTCCAAAGAAACGGGCGTCAACCTaGCCGTCTTTGTCCCTCAGAGCTTTCGCTGGCCAGAATGGAAAT +
Preference number: 5 (lower is better)
Translates to: GTQALSCCPKKRAST*PSLSLRAFAGQNGN
Trigger: ATTTCCATTCTGGCCAGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGACGCCCGTTTCTTTGGACAACATGACAGAGCCTGGGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp TCGGCCATGGTCAACTCCAGGTTGTGCTTCATCTCAGCGAGCTCCTaGTGGTGCAGCCACTGCAGTTTCTCAATCTCAATCCTCAGCCTT +
Preference number: 5 (lower is better)
Translates to: SAMVNSRLCFISASS*WCSHCSFSISILSL
Trigger: AAGGCTGAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCACAACCTGGAGTTGACCATGGCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp GCCATGGTCAACTCCAGGTTGTGCTTCATCTCAGCGAGCTCCTGCTaGTGCAGCCACTGCAGTTTCTCAATCTCAATCCTCAGCCTTCGA +
Preference number: 5 (lower is better)
Translates to: AMVNSRLCFISASSC*CSHCSFSISILSLR
Trigger: TCGAAGGCTGAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCACAACCTGGAGTTGACCATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGACTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTTCTGGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: CSGSQCTPSPRRHLAETPEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...GGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGCTCGCGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: MRFFVLVPPLCSERDDARVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGAAAAAGAATTCCATGGTCTCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: QILAASTLEITRKKNSMVSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...GACCATGGAATTCTTTTTCCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWRQAPG*PRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCT...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGMVLSR*SWNRLR
Trigger: TCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDTWFVG*GFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGT...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: SAIPAKTRAGMESSLCPATWFVG*GFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGT...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLTWFVG*GFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGT...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCTWFVG*GFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGT...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMSLTGE*LFASSL
Trigger: CAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGATGGTCAACTCCAGGTaGTGCTTCATCTCAGCGAGC +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPMVNSR*CFISAS
Trigger: GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGATGGTCAACTCCAGGTaGTGCTTCATCTCAGCGAGC +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMMVNSR*CFISAS
Trigger: GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCLLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCT +
Preference number: 5 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIGASFS*GALAGS
Trigger: AGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCC...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CATCCGCTTCTAAGAATGGCCCCACCTGGCCTTCCTTGGGGACTATCTCCCTCACCGTCCTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: HPLLRMAPPGLPWGLSPSPSCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGGACGG...TGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGGGGCCATTCTTAGAAGCGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS GCA 90 bp GTCCCTCAGAGCTTTCGCTGGCCAGAATGGAAATCCTTTCAGTTTTaGCCAGACCAAAGGGTGCGGATTGCTACAGGGCTCACAGAACCA +
Preference number: 5 (lower is better)
Translates to: VPQSFRWPEWKSFQF*PDQRVRIATGLTEP
Trigger: TGGTTCTGTGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAAGCTCTGAGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp TCGCTGACAGGAGAGTTGCTCTTCGCTTCCTCTTTGACCTCTACCTaGTTTGTGGGTTTGGGCTTCCTTTTGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: SLTGELLFASSLTST*FVGLGFLLMAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTGTAGAGACAGGATCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCVETGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGATCCTGTCTCTAC...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCGTAGAGACAGGATCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAVETGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGATCCTGTCTCTAC...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: LREPELETHHTHILLSVSSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGCTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTGCTCCGGGAATGTCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: RSLLLAAAPQTCLAAPGMSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...CATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCACTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGAACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: LKCLAHRVVPSQPRPELGTWFVG*GFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGT...TCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: LREPELETHHTHILLSVSSLTGE*LFASSL
Trigger: CAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSDEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTTCTGGCTCACAATGCACCCCTAGTCCCAGAAGGCATCTAGCCGAGACTCCCCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: CSGSQCTPSPRRHLAETPLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...GGGAGTCTCGGCTAGATGCCTTCTGGGACTAGGGGTGCATTGTGAGCCAGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp TCTTTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATTTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: SLGMRFFVLVPPLCSERDFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...ATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCACGTTTGAAACTTACTaGATGCGTTCCACACGACCC +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPATFETY*MRSTRP
Trigger: GGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGT...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 90 bp ATGGTCAACTCCAGGTTGTGCTTCATCTCAGCGAGCTCCTGCTGGTaGAGCCACTGCAGTTTCTCAATCTCAATCCTCAGCCTTCGAATC +
Preference number: 5 (lower is better)
Translates to: MVNSRLCFISASSCW*SHCSFSISILSLRI
Trigger: GATTCGAAGGCTGAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDDDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp GTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCCCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: VAVLQFLLLPVVWAVSPAPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...GGCGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTGATGAGAAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: RDEKKRVKGTAANSHEALGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...CAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTTCTCATCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TCCAAACTACGACACATAGCTGGAAAAGCCAGCCCTGAAGGAGGCAAGGGGGATGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: SKLRHIAGKASPEGGKGDGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...ATCCCCCTTGCCTCCTTCAGGGCTGGCTTTTCCAGCTATGTGTCGTAGTTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CCACCTGGCCTTCCTTGGGGACTATCTCCCTCATCTGTGGGATCTGGTGGTGCCTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: PPGLPWGLSPSSVGSGGASCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...GGCACCACCAGATCCCACAGATGAGGGAGATAGTCCCCAAGGAAGGCCAGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLRQAPG*PRLGGG
Trigger: GCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPMVLSR*SWNRLR
Trigger: TCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTTCTCTCACACTGCCTGTGATGGCATCCATCATTTaGCTGGTGTACTTGGCAATG +
Preference number: 5 (lower is better)
Translates to: RSVNGQHVGSWLSLTLPVMASII*LVYLAM
Trigger: CATTGCCAAGTACACCAGCAAAATGATGGATGCCAT...CACAGGCAGTGTGAGAGAAAGCCAGGACCCGACATGCTGTCCGTTAACGCTACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTCTTCCTTAGGTTCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLSSLGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGAACCTAAGGAAGA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109269.8
CDS TCA 90 bp TATCTTCTGCATGTGCCACTTTTGGGAGGACGTTTGAAACTTACTTaGTGCGTTCCACACGACCCGCTGCACAGCTGGGACAGTCTCCTT +
Preference number: 5 (lower is better)
Translates to: YLLHVPLLGGRLKLT*CVPHDPLHSWDSLL
Trigger: AAGGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAAGTGGCACATGCAGAAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 90 bp TCCAGGTTGTGCTTCATCTCAGCGAGCTCCTGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATCCTCAGCCTTCGAATCTCAGCTATT +
Preference number: 5 (lower is better)
Translates to: SRLCFISASSCWCSH*SFSISILSLRISAI
Trigger: AATAGCTGAGATTCGAAGGCTGAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCACAACCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp TGCTACTGTAATCTTCTCACATTCAGGACAAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAGACACTTAGCGTGATAAACCCGGGG +
Preference number: 5 (lower is better)
Translates to: CYCNLLTFRTKPVPL*LRCQSQTLSVINPG
Trigger: CCCCGGGTTTATCACGCTAAGTGTCTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTTTGTCCTGAATGTGAGAAGATTACAGTAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTGTAGAGACAGGATCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSVETGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGATCCTGTCTCTAC...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099084.9
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVLCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: SAIPAKTRAGMESSLCPADDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLDDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCAGCCAAGCTCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: SQPRPELGWSQVSVLQPSSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...GCTTGGCTGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGAAAAAGAATTCCATGGTCTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: QILAASTLEITRKKNSMVSTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...GACCATGGAATTCTTTTTCCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TTGGGCATGAGGTTCTTCGTGCTGGTCCCTCCACTGTGCTCAGAGCGGGATGACTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: LGMRFFVLVPPLCSERDDSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...GTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATCCTGTTTGTCTGTCTaGGCTGTGCCCGCGCTGGGG +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLSCLSV*AVPALG
Trigger: CCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATCACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: ITRKKNSMVNTAPVLLSYLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...GTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACG +
Preference number: 5 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVLRICR*GEMRGT
Trigger: CGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAG...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: LREPELETHHTHILLSVSMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCTTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGAAAAGAGTCAAGGGCACTGCTGCGAACAGCCATGAGGCTCTGACAGTGGCCTCTTCCTTAGGTTCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: KKRVKGTAANSHEALTVASSLGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGAACCTAAGGAAGA...GGCCACTGTCAGAGCCTCATGGCTGTTCGCAGCAGTGCCCTTGACTCTTTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153655.8
CDS TCA 90 bp AGTCATTCCGTCCGTCCTGCGGTACAACATCAACAGGGTCTGTGGTaGGTGGCTGCTTCATATAGTAAAACGGACCATGTCTTAGCTCTG +
Preference number: 5 (lower is better)
Translates to: SHSVRPAVQHQQGLW*VAASYSKTDHVLAL
Trigger: CAGAGCTAAGACATGGTCCGTTTTACTATATGAAGCAGCCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGACGGAATGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS GCA 90 bp GGATCTTTGGAGCGAGTAGAGATATCCATTCCCTCCACCACCTCCTaGTCGGTTTTTATTTCCTCTTCAGCCAAGCTTCCCGACATCTTC +
Preference number: 5 (lower is better)
Translates to: GSLERVEISIPSTTS*SVFISSSAKLPDIF
Trigger: GAAGATGTCGGGAAGCTTGGCTGAAGAGGAAATAAAAACCGAGCAGGAGGTGGTGGAGGGAATGGATATCTCTACTCGCTCCAAAGATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136842.2
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGAAAAAGAATTCCATGGTCAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: QILAASTLEITRKKNSMVSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...GACCATGGAATTCTTTTTCCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TGGGGAGTCCTGCAATTAGAGACCAGTTGTTGTCTCCAAACTACGACACATAGCAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: WGVLQLETSCCLQTTTHSSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...GCTATGTGTCGTAGTTTGGAGACAACAACTGGTCTCTAATTGCAGGACTCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: KVFGSQGSAIPAKTRAGMDDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...CATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGCATCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: SAIPAKTRAGMESSLCPASCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...TGCAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVSTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMASTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSTCPS*SLRAFA
Trigger: AGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGGGTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: QGSAIPAKTRAGMESSLCSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...ACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTACCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTAGTGCCATCCCAGCCAAGACCAGAGCTGGGATGGAGTCAAGTCTCTGTCCTGTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: VVPSQPRPELGWSQVSVLSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...CAGGACAGAGACTTGACTCCATCCCAGCTCTGGTCTTGGCTGGGATGGCACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAAAATGGAACTACAGCAGACGTAGCGTTAACGGACAGCATGTCGGGTCCTGGCGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: QNGTTADVALTDSMSGPGVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...GCCAGGACCCGACATGCTGTCCGTTAACGCTACGTCTGCTGTAGTTCCATTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTGTGCCCGCGCTGGGGTaGCTGGGATCCAGCAGCATT +
Preference number: 5 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFVPALG*LGSSSI
Trigger: AATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCAC...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGTTCACCTTCTCCTGTTaGTCTGTCTTGGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQFTFSC*SVLAVP
Trigger: GGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAA...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCMVLSR*SWNRLR
Trigger: TCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCACAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCCTCGGGCTCATTCTaGGGCTTCTGTTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSSGSF*GFCSSS
Trigger: CGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCGLGFL*MAGASL
Trigger: CAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACC...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGGCCTCGCCGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTATGGCATCCATCATTTaGCTGGTGTACTTGGCAATG +
Preference number: 5 (lower is better)
Translates to: WPRRAPLLFESLLLRSTSMASII*LVYLAM
Trigger: CATTGCCAAGTACACCAGCAAAATGATGGATGCCAT...AGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACGGCGAGGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPLLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACACCACTGCTTCTTCTaGGTCTCGTCCACCGCCTGC +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLHHCFF*VSSTAC
Trigger: GCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCCTCCTTCTTGCAGTaGGCACACCACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWASFLQ*AHHCFF
Trigger: GAAGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGC...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCTGCTGGCTCTGCTGTaGGCTCTGCTGTTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVLLALL*ALLLLL
Trigger: CAACAACAACAGCAGAGCCAACAGCAGAGCCAGCAG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 90 bp AAGTCTATGACAAGTTCGCTCTCCGAGTCCGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTTTCATCCTTTCCTTTCAGTTTGTCC +
Preference number: 5 (lower is better)
Translates to: KSMTSSLSESESKPK*TVGESVSSFPFSLS
Trigger: GGACAAACTGAAAGGAAAGGATGAAACGGATTCTCCCACAGTGCACTTGGGCTTGGATTCGGACTCGGAGAGCGAACTTGTCATAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTTCGGGAGCCAGAGCTGGAAACACACCACACACACATACTTCTCTCTGTGTCCTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: LREPELETHHTHILLSVSSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...GGACACAGAGAGAAGTATGTGTGTGTGGTGTGTTTCCAGCTCTGGCTCCCGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCTCTGACTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTSDCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGTCAGA...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: STLTQRYQKLSFRGLVRWLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...CCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAAC +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCLTAKD*SFPVTN
Trigger: GTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAG...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGGAAGGCTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTTTGTGCAGGATCCACTaGGCATCGGCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: VGRLRHKDIKYVPKATSTLCRIH*ASARKA
Trigger: AGCCTTCCTGGCCGATGCCAAGTGGATCCTGCACAA...AGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAGCCTTCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTGTTTCTCCCGTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: RWRFSSFCCFLWFGLFLPSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...CGGGAGAAACAGCCCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTCCATTGCATCTCTTCTCAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: LHCISSQILAASTLEITRVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...CCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTGAGAAGAGATGCAATGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: QCRYEKERYARSVTSQVYMVLSR*SWNRLR
Trigger: TCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQQLSMV*SRLSWN
Trigger: GTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQTWFVG*GFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSLTGE*LFASSL
Trigger: CAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVSLTGE*LFASSL
Trigger: CAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCATTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCATGGTCAACTCCAGGTaGTGCTTCATCTCAGCGAGC +
Preference number: 5 (lower is better)
Translates to: RAPLLFESLLLRSTSSQIMVNSR*CFISAS
Trigger: GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAACGTTTGAAACTTACTaGATGCGTTCCACACGACCC +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPTFETY*MRSTRP
Trigger: GGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCACTGCATGTGCCACTTTaGGGAGGACGTTTGAAACTT +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPLHVPL*GGRLKL
Trigger: AAGTTTCAAACGTCCTCCCAAAAGTGGCACATGCAG...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CCA 90 bp CATGGGGTGGAAAATATATTCTGCATAGTCAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGCATCCGTCCCTGGCTGCTTCATTTT +
Preference number: 5 (lower is better)
Translates to: HGVENIFCIVRVLLQ*NRLLECIRPWLLHF
Trigger: AAAATGAAGCAGCCAGGGACGGATGCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCTGACTATGCAGAATATATTTTCCACCCCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp TCCTCAGCCTTCGAATCTCAGCTATTGTGCTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTTCTGTCATCGTCCCCTTTATGGCAT +
Preference number: 5 (lower is better)
Translates to: SSAFESQLLCSQWCS*RGHCRFLSSSPLWH
Trigger: ATGCCATAAAGGGGACGATGACAGAAATCTACAATGACCTCTCCAAGAACACCACTGGGAGCACAATAGCTGAGATTCGAAGGCTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp CAATCTCAATCCTCAGCCTTCGAATCTCAGCTATTGTGCTCCCAGTaGTGTTCTTGGAGAGGTCATTGTAGATTTCTGTCATCGTCCCCT +
Preference number: 5 (lower is better)
Translates to: QSQSSAFESQLLCSQ*CSWRGHCRFLSSSP
Trigger: AGGGGACGATGACAGAAATCTACAATGACCTCTCCAAGAACACCACTGGGAGCACAATAGCTGAGATTCGAAGGCTGAGGATTGAGATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATCTGACTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPSDCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGTCAGA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: LLTPKVFGSQGSAIPAKTDDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...GGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGGACGACTTTTGCTATTaGCGTCAACTTGTGATTTCC +
Preference number: 5 (lower is better)
Translates to: HQEKEFHGQHCPSAPVLLDDFCY*RQLVIS
Trigger: GGAAATCACAAGTTGACGCAAATAGCAAAAGTCGTC...CAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTCCGCTCAGAAGGGGCTaGCTCAGAAGGATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFPLRRG*LRRILG
Trigger: CCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGG...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGA +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLMVLSR*SWNRLR
Trigger: TCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AAGTGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: KCTYLHLKCLAHRVVPSQLSVCP*WDEVMA
Trigger: AGCCATCACCTCATCCCACAAAGGACAAACTGAAAG...CTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCAAGACCAATGGCATCCATCATTTaGCTGGTGTACTTGGCAATG +
Preference number: 5 (lower is better)
Translates to: YLHLKCLAHRVVPSQPRPMASII*LVYLAM
Trigger: CATTGCCAAGTACACCAGCAAAATGATGGATGCCAT...TGGTCTTGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACATGGTCAACTCCAGGTaGTGCTTCATCTCAGCGAGC +
Preference number: 5 (lower is better)
Translates to: QCRYEKERYARSVTSQVYMVNSR*CFISAS
Trigger: GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCAT...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLLLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGCTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWLLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCCCGTCCTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVPSCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGGACGG...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099084.9
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAAGCATGGTCATGGCTTaGCTCTGCGTCTCGATGCAT +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLSMVMA*LCVSMH
Trigger: ATGCATCGAGACGCAGAGCAAAGCCATGACCATGCT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: QCRYEKERYARSVTSQVYEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTCACGTCTAAGTCAACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: LTSKSTLTQRYQKLSFRGEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...CCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTTGACTTAGACGTGAG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGGCTCACAGAACCAGTaGTCTCGTTTTTGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: QCRYEKERYARSVTSQVYGSQNQ*SRFWQA
Trigger: AGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATTGCTCAGAAGGATCTaGGGGGACGCTGTCATGTCA +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLLLRRI*GDAVMS
Trigger: TGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTATGCCTAGCTGTGCTTaGCAACTCTCTATGGTCTTG +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCMPSCA*QLSMVL
Trigger: CAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCAT...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTATCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLSLTGE*LFASSL
Trigger: CAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGA...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp CTGTGGGAGAATCCGTTTCATCCTTTCCTTTCAGTTTGTCCTTTGTaGGATGAGGTGATGGCTTTGCTTTCTCTACAAAGTCCTTCTCAG +
Preference number: 5 (lower is better)
Translates to: LWENPFHPFLSVCPL*DEVMALLSLQSPSQ
Trigger: CTGAGAAGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAGGACAAACTGAAAGGAAAGGATGAAACGGATTCTCCCACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGGGGAGTCCTGCAATTAGAGACCAGTTGTTGTCTCCAAACTACGACACATAGCTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: WGVLQLETSCCLQTTTHSSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...GCTATGTGTCGTAGTTTGGAGACAACAACTGGTCTCTAATTGCAGGACTCCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp ACCAGGAAAAAGAATTCCATGGTCAACACTGCCCCAGTGCTCCTGTCCTACTGTTCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: TRKKNSMVNTAPVLLSYCSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...ACAGTAGGACAGGAGCACTGGGGCAGTGTTGACCATGGAATTCTTTTTCCTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TGTACCTACTTACACCTAAAGTGTTTGGCTCACAGGGTAGTGCCATCCCAGCCATCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: CTYLHLKCLAHRVVPSQPSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...TGGCTGGGATGGCACTACCCTGTGAGCCAAACACTTTAGGTGTAAGTAGGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGCCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACA +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLPVVSF*ASCKIT
Trigger: TGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGG...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVDEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLDEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTATGGCATCCATCATTTaGCTGGTGTACTTGGCAATG +
Preference number: 5 (lower is better)
Translates to: VLEILKVAVLQFLLLPVVMASII*LVYLAM
Trigger: CATTGCCAAGTACACCAGCAAAATGATGGATGCCAT...AACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTACCGTCCTGTTCCTTATaGCTACTGTTGAGTAAGCCG +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLPSCSL*LLLSKP
Trigger: CGGCTTACTCAACAGTAGCAATAAGGAACAGGACGG...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099084.9
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 90 bp ATTGCTACAGGGCTCACAGAACCAGTTGTCTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACAGACTTCGATTTCATTCATCTCGTG +
Preference number: 5 (lower is better)
Translates to: IATGLTEPVVSFLAS*KITFWTDFDFIHLV
Trigger: CACGAGATGAATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCCCTGTAGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CGTGCACCTTTGCTTTTTGAGTCCTTGCTTCTGAGAAGCACGTCTTCACAAATCTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: RAPLLFESLLLRSTSSQISLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...GATTTGTGAAGACGTGCTTCTCAGAAGCAAGGACTCAAAAAGCAAAGGTGCACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: VGNSKGGGSPVSVASCGLSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...CAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp AACCCTAACACAAAGGTATCAAAAACTAAGCTTTCGGGGGCTGGTGAGATGGCTTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: NPNTKVSKTKLSGAGEMASLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...AGCCATCTCACCAGCCCCCGAAAGCTTAGTTTTTGATACCTTTGTGTTAGGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp TTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTGGTTTGGTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: LEILKVAVLQFLLLPVVWSLLLL*SKPGFF
Trigger: AAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGA...CCAAACCACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp CAGATCCTCGCAGCCAGCACTTTAGAGATCACCAGGAAAAAGAATTCCATGGTCTCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: QILAASTLEITRKKNSMVSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...GACCATGGAATTCTTTTTCCTGGTGATCTCTAAAGTGCTGGCTGCGAGGATCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CAGTGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: QCRYEKERYARSVTSQVYDEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...GTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAAAAATGGCCTCCTTCTaGCAGTTGGCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: IHTSPFASIDARFTQHTKKMASF*QLAHHC
Trigger: GCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTT...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
44% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGT +
Preference number: 5 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFEQVGQ*FNGQHG
Trigger: ACCATGCTGACCATTGAACAACTGTCCTACCTGCTC...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCTCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCG +
Preference number: 5 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFEILSV*PRPKGA
Trigger: CGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTC...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp CTGAGTGTTGGAAATTCTAAAGGTGGCGGTTCTCCAGTTTCTGTTGCTTCCTGTTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: LSVGNSKGGGSPVSVASCSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...ACAGGAAGCAACAGAAACTGGAGAACCGCCACCTTTAGAATTTCCAACACTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACTTCTCTCTGTGTCCTTCAAGGCCAGCAAGCATGTGTTTCCTAACATCGTCTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: ILLSVSFKASKHVFPNIVSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...GACGATGTTAGGAAACACATGCTTGCTGGCCTTGAAGGACACAGAGAGAAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp TGTAGATATGAAAAGGAAAGGTACGCTAGGTCAGTGACGTCACAAGTGTACCTAGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGAT +
Preference number: 5 (lower is better)
Translates to: CRYEKERYARSVTSQVYLVNFHL*HGAVED
Trigger: ATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTAC...TAGGTACACTTGTGACGTCACTGACCTAGCGTACCTTTCCTTTTCATATCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAACTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAAT +
Preference number: 5 (lower is better)
Translates to: IHTSPFASIDARFTQHTKLLQLQ*LFHLGN
Trigger: ATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAG...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GAGTTTGCACACGAACACACTTTATTTTACGATGTGCTAACTTCAAGCAGGTTTGTAGAGACAGGATCTTaGGAGCGAGTAGAGATATCC +
Preference number: 5 (lower is better)
Translates to: EFAHEHTLFYDVLTSSRFVETGS*ERVEIS
Trigger: GGATATCTCTACTCGCTCCAAAGATCCTGTCTCTAC...AAACCTGCTTGAAGTTAGCACATCGTAAAATAAAGTGTGTTCGTGTGCAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109262.8
CDS-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: IHTSPFASIDARFTQHTKFESQL*CSQWCS
Trigger: AGAACACCACTGGGAGCACAATAGCTGAGATTCGAA...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 90 bp ACAGAACCAGTTGTCTCGTTTTTGGCAAGCTGCAAGATAACATTCTaGACAGACTTCGATTTCATTCATCTCGTGCTCACAGATTTTGAT +
Preference number: 5 (lower is better)
Translates to: TEPVVSFLASCKITF*TDFDFIHLVLTDFD
Trigger: ATCAAAATCTGTGAGCACGAGATGAATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGGTTCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp GTGGGAAGGCTAAGGCATAAAGACATTAAATATGTCCCCAAAGCCACATCAACTTCTTGCATGGCGCTGTaGAAGATACTTTTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: VGRLRHKDIKYVPKATSTSCMAL*KILLVF
Trigger: AAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGA...AGTTGATGTGGCTTTGGGGACATATTTAATGTCTTTATGCCTTAGCCTTCCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAAGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: IHTSPFASIDARFTQHTKDEVMA*LSLQSP
Trigger: AGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATC...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS-3UTR CAA 90 bp ATACACACATCACCTTTTGCTTCGATCGATGCTCGCTTTACACAACATACAAAATCGTGCTCACAGATTTaGATGACGACTTTTGCTATT +
Preference number: 5 (lower is better)
Translates to: IHTSPFASIDARFTQHTKSCSQI*MTTFAI
Trigger: AATAGCAAAAGTCGTCATCAAAATCTGTGAGCACGA...TTTTGTATGTTGTGTAAAGCGAGCATCGATCGAAGCAAAAGGTGATGTGTGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp TTGCAGACGCCAGGGTGCTTGCTGAGCCCGAACTGCTaGCCAGGGCTGCCGGCTGTGTGCTGGTCACCAGCG +
Preference number: 6 (lower is better)
Translates to: LQTPGCLLSPNC*PGLPAVCWSPA
Trigger: CGCTGGTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGTTCGGGCTCAGCAAGCACCCTGGCGTCTGCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TGGGTGTCGGCGCTTGCGGAGAGAAAGGCTTTGGGCTaGCAGACAAGCTCCCGGCTTGCCCCGTCTTGGTGG +
Preference number: 6 (lower is better)
Translates to: WVSALAERKALG*QTSSRLAPSWW
Trigger: CCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TGCCGCTTGGGAGAGATGAGAGGGACGGGGGCTGACTaGTGCTGGACCGACTCGCTCAGCTCCTTCAGGTCC +
Preference number: 6 (lower is better)
Translates to: CRLGEMRGTGAD*CWTDSLSSFRS
Trigger: GGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CTTCTTCACCGGGCTTCCCGTGACGGCGGTGGCCGGTaGCGTGACTGTGACGGTAGACATCGTGCTGGTGGT +
Preference number: 6 (lower is better)
Translates to: LLHRASRDGGGR*RDCDGRHRAGG
Trigger: ACCACCAGCACGATGTCTACCGTCACAGTCACGGCACCGGCCACCGCCGTCACGGGAAGCCCGGTGAAGAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp ACAGCTGGGACAGTCTCCTTCGGTAAGAGCGGCCTCTaGTTCTTCACCGGGCTTCCCGTGACGGCGGTGGCC +
Preference number: 6 (lower is better)
Translates to: TAGTVSFGKSGL*FFTGLPVTAVA
Trigger: GGCCACCGCCGTCACGGGAAGCCCGGTGAAGAAGCAGAGGCCGCTCTTACCGAAGGAGACTGTCCCAGCTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp GCTGAGCGGGTGAGTACCGGTGTCTCTGGGGGAGACTaGTTGCCCGCCGAAGTGGACGACGGTGGCGGTTTA +
Preference number: 6 (lower is better)
Translates to: AERVSTGVSGGD*LPAEVDDGGGL
Trigger: TAAACCGCCACCGTCGTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGACACCGGTACTCACCCGCTCAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GAGCGGGTGAGTACCGGTGTCTCTGGGGGAGACTGGTaGCCCGCCGAAGTGGACGACGGTGGCGGTTTACCT +
Preference number: 6 (lower is better)
Translates to: ERVSTGVSGGDW*PAEVDDGGGLP
Trigger: AGGTAAACCGCCACCGTCGTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGACACCGGTACTCACCCGCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TTCTTCTCGGGGTCCTGCTCCACATCGGAGCCCGTGTaGACGGAAGAGTTCGTACTGGTGGGGGAGCGAGGC +
Preference number: 6 (lower is better)
Translates to: FFSGSCSTSEPV*TEEFVLVGERG
Trigger: GCCTCGCTCCCCCACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CTGAAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCTaGTCCACATCGGAGCCCGTGTGCACGGAAGAGTTC +
Preference number: 6 (lower is better)
Translates to: LKWLDGAFFSGS*STSEPVCTEEF
Trigger: GAACTCTTCCGTGCACACGGGCTCCGATGTGGAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CGCTTGGGAGAGATGAGAGGGACGGGGGCTGACTGCTaGTGGACCGACTCGCTCAGCTCCTTCAGGTCCATC +
Preference number: 6 (lower is better)
Translates to: RLGEMRGTGADC*WTDSLSSFRSI
Trigger: GATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CATCGGAGCCCGTGTGCACGGAAGAGTTCGTACTGGTaGGGGAGCGAGGCATGTCGGACAGGGAGATCCTGC +
Preference number: 6 (lower is better)
Translates to: HRSPCARKSSYW*GSEACRTGRSC
Trigger: GCAGGATCTCCCTGTCCGACATGCCTCGCTCCCCCACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CCACATCGGAGCCCGTGTGCACGGAAGAGTTCGTACTaGTGGGGGAGCGAGGCATGTCGGACAGGGAGATCC +
Preference number: 6 (lower is better)
Translates to: PHRSPCARKSSY*WGSEACRTGRS
Trigger: GGATCTCCCTGTCCGACATGCCTCGCTCCCCCACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp TGGGTGGCTGAGCGGGTGAGTACCGGTGTCTCTGGGGGAGACTGGTaGCCCGCCGAAGTGGACGACGGTGGCGGTTTACCTATAGCGTCT +
Preference number: 6 (lower is better)
Translates to: WVAERVSTGVSGGDW*PAEVDDGGGLPIAS
Trigger: AGACGCTATAGGTAAACCGCCACCGTCGTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGACACCGGTACTCACCCGCTCAGCCACCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp AGGAGGGCGTCTCTCTGGAGCCGGAAAGATCCAGGGTTACTGTCCTaGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTGGGGGCGCTGGCC +
Preference number: 6 (lower is better)
Translates to: RRASLWSRKDPGLLS*LFSAGASFSLGALA
Trigger: GGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAACCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS GCA 72 bp GAGAAAGGCTTTGGGCTGCCAGACAAGCTCCCGGCTTaGCCCGTCTTGGTGGAGGCTGGAGAAGCTGTGCTC +
Preference number: 6 (lower is better)
Translates to: EKGFGLPDKLPA*PVLVEAGEAVL
Trigger: GAGCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TCGGCAATGAGCCGATCCCGCTCCTGTTCCAGGCTCTaGCGCATCTCGGCCATGGTCAACTCCAGGTTGTGC +
Preference number: 6 (lower is better)
Translates to: SAMSRSRSCSRL*RISAMVNSRLC
Trigger: GCACAACCTGGAGTTGACCATGGCCGAGATGCGGCAGAGCCTGGAACAGGAGCGGGATCGGCTCATTGCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TCAAGGAAGTCCATGGACTCCTCGCTTGCGCTGAAGTaGCTGGACGGGGCCTTCTTCTCGGGGTCCTGCTCC +
Preference number: 6 (lower is better)
Translates to: SRKSMDSSLALK*LDGAFFSGSCS
Trigger: GGAGCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TTGGGAGAGATGAGAGGGACGGGGGCTGACTGCTGCTaGACCGACTCGCTCAGCTCCTTCAGGTCCATCTCG +
Preference number: 6 (lower is better)
Translates to: LGEMRGTGADCC*TDSLSSFRSIS
Trigger: CGAGATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TCCAGGTTGAGCTGGAACCGGCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACGGGGGCTGACTGCTGC +
Preference number: 6 (lower is better)
Translates to: SRLSWNRLRICR*GEMRGTGADCC
Trigger: GCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp TGTCTTGGCTGTGCCCGCGCTGGGGTTGCTGGGATCCAGCAGCATTaGGTACTGGTTGTTGGGCGTGTAGGGCGTCCTGAACGGGGAGTA +
Preference number: 6 (lower is better)
Translates to: CLGCARAGVAGIQQH*VLVVGRVGRPERGV
Trigger: TACTCCCCGTTCAGGACGCCCTACACGCCCAACAACCAGTACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCACAGCCAAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp ATGGTCTTGTCCAGGTTGAGCTGGAACCGGCTTCGAATCTGCCGCTaGGGAGAGATGAGAGGGACGGGGGCTGACTGCTGCTGGACCGAC +
Preference number: 6 (lower is better)
Translates to: MVLSRLSWNRLRICR*GEMRGTGADCCWTD
Trigger: GTCGGTCCAGCAGCAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp GTCTTGTCCAGGTTGAGCTGGAACCGGCTTCGAATCTaGCGCTTGGGAGAGATGAGAGGGACGGGGGCTGAC +
Preference number: 6 (lower is better)
Translates to: VLSRLSWNRLRI*RLGEMRGTGAD
Trigger: GTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CCCGCTCCTGTTCCAGGCTCTGCCGCATCTCGGCCATaGTCAACTCCAGGTTGTGCTTCATCTCAGCGAGCT +
Preference number: 6 (lower is better)
Translates to: PAPVPGSAASRP*STPGCASSQRA
Trigger: AGCTCGCTGAGATGAAGCACAACCTGGAGTTGACCATGGCCGAGATGCGGCAGAGCCTGGAACAGGAGCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TCTTCTCCGCTGGCGCCTCTTTCTCTTTGGGGGCGCTaGCCGGTTCTGAAGGTGCTGACTGTGTGTTGGAGG +
Preference number: 6 (lower is better)
Translates to: SSPLAPLSLWGR*PVLKVLTVCWR
Trigger: CCTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TGTCCTTGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTaGGGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTG +
Preference number: 6 (lower is better)
Translates to: CPCSSPLAPLSL*GRWPVLKVLTV
Trigger: CACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CTGGTCACCAGCGTGATGGTGGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGGACAGCTTTCACAGCC +
Preference number: 6 (lower is better)
Translates to: LVTSVMVDVDGL*VTSFCWTAFTA
Trigger: GGCTGTGAAAGCTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCATCACGCTGGTGACCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CAA 72 bp TGTGCCCGCGCTGGGGTTGCTGGGATCCAGCAGCATTaGGTACTGGTTGTTGGGCGTGTAGGGCGTCCTGAA +
Preference number: 6 (lower is better)
Translates to: CARAGVAGIQQH*VLVVGRVGRPE
Trigger: TTCAGGACGCCCTACACGCCCAACAACCAGTACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp AGAGAAAGGCTTTGGGCTGCCAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGCTGGAGAAGCTGTGCT +
Preference number: 6 (lower is better)
Translates to: RERLWAARQAPG*PRLGGGWRSCA
Trigger: AGCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TTCTCTACAAAGTCCTTCTCAGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGGTCCGGCTTCTCGCTG +
Preference number: 6 (lower is better)
Translates to: FSTKSFSGSGLA*SLAGVGSGFSL
Trigger: CAGCGAGAAGCCGGACCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GGTCTCGTCCACCGCCTGCTGCTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAATGAGCCGATCCCGCTC +
Preference number: 6 (lower is better)
Translates to: GLVHRLLLLQLQ*LFHLGNEPIPL
Trigger: GAGCGGGATCGGCTCATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp CGCTTGCGGAGAGAAAGGCTTTGGGCTGCCAGACAAGCTCCCGGCTaGCCCCGTCTTGGTGGAGGCTGGAGAAGCTGTGCTCTTATCAAG +
Preference number: 6 (lower is better)
Translates to: RLRRERLWAARQAPG*PRLGGGWRSCALIK
Trigger: CTTGATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GCTTTCTCTACAAAGTCCTTCTCAGGCTCTGGGCTGGCCTTGTCCTaGGCGGGTGTGGGGTCCGGCTTCTCGCTGACAGGAGAGTTGCTC +
Preference number: 6 (lower is better)
Translates to: AFSTKSFSGSGLALS*AGVGSGFSLTGELL
Trigger: GAGCAACTCTCCTGTCAGCGAGAAGCCGGACCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GGCTTTGCTTTCTCTACAAAGTCCTTCTCAGGCTCTGGGCTGGCCTaGTCCTTGGCGGGTGTGGGGTCCGGCTTCTCGCTGACAGGAGAG +
Preference number: 6 (lower is better)
Translates to: GFAFSTKSFSGSGLA*SLAGVGSGFSLTGE
Trigger: CTCTCCTGTCAGCGAGAAGCCGGACCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAAAGCAAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GTCTCTCTGGAGCCGGAAAGATCCAGGGTCGAGTTACTACTGTCCTaGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTGGGGGCGCTGGCC +
Preference number: 6 (lower is better)
Translates to: VSLEPERSRVELLLS*LFSAGASFSLGALA
Trigger: GGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAGTAACTCGACCCTGGATCTTTCCGGCTCCAGAGAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp CCAGGGTTACTGTCCTTGCTCTTCTCCGCTGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTGTGTTGGAG +
Preference number: 6 (lower is better)
Translates to: PGLLSLLFSAGASFS*GALAGSEGADCVLE
Trigger: CTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAACCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS CAA 90 bp TCTCGTCCCCTGGGAAGACTGAGGCTGCTGCTGCTGGCTCTGCTGTaGGCTCTGCTGTTGTTGTTGCTGCTGCTGCTGCTGGCGCTGTAT +
Preference number: 6 (lower is better)
Translates to: SRPLGRLRLLLLALL*ALLLLLLLLLLALY
Trigger: ATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCAGCAGCAGCCTCAGTCTTCCCAGGGGACGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS TCA 72 bp GCTTCTCCAGCTCCAGTTGCTTTTTCACCTCGGCAATaGGCCGATCCCGCTCCTGTTCCAGGCTCTGCCGCA +
Preference number: 6 (lower is better)
Translates to: ASPAPVAFSPRQ*ADPAPVPGSAA
Trigger: TGCGGCAGAGCCTGGAACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CCGACTCGCTCAGCTCCTTCAGGTCCATCTCGGCCTTaGTTCGATCCAAGTTCAGGTTCAGGATGCTCCCGG +
Preference number: 6 (lower is better)
Translates to: PTRSAPSGPSRP*FDPSSGSGCSR
Trigger: CCGGGAGCATCCTGAACCTGAACTTGGATCGAAGCAAGGCCGAGATGGACCTGAAGGAGCTGAGCGAGTCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TTCTGCTGGACAGTTGATGCGTTCCACACGACCCGCTaGACAGCTGGGACAGTCTCCTTCGGTAAGAGCGGC +
Preference number: 6 (lower is better)
Translates to: FCWTVDAFHTTR*TAGTVSFGKSG
Trigger: GCCGCTCTTACCGAAGGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp GCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTGCTaGTCCGGGAATGGTACTTCTGGGCTGGGTAGTTGG +
Preference number: 6 (lower is better)
Translates to: ASPRCCSTNLPC*SGNGTSGLGSW
Trigger: CCAACTACCCAGCCCAGAAGTACCATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CTCGCTTCTCCTCGCTGCTGCTCCACAAACCTGCCTTaGTGCTCCGGGAATGGTACTTCTGGGCTGGGTAGT +
Preference number: 6 (lower is better)
Translates to: LASPRCCSTNLP*CSGNGTSGLGS
Trigger: ACTACCCAGCCCAGAAGTACCATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAAGCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp GGCTGCCAGACAAGCTCCCGGCTTGCCCCGTCTTGGTaGAGGCTGGAGAAGCTGTGCTCTTATCAAGGAAGT +
Preference number: 6 (lower is better)
Translates to: GCQTSSRLAPSW*RLEKLCSYQGS
Trigger: ACTTCCTTGATAAGAGCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TGGCTTTGCTTTCTCTACAAAGTCCTTCTCAGGCTCTaGGCTGGCCTTGTCCTTGGCGGGTGTGGGGTCCGG +
Preference number: 6 (lower is better)
Translates to: WLCFLYKVLLRL*AGLVLGGCGVR
Trigger: CCGGACCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAAAGCAAAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CTGGTCACCAGCGTGATGGTGGACGTGGATGGGCTCTaGGTGACCTCCTTCTGCTGGACAGTTGATGCGTTC +
Preference number: 6 (lower is better)
Translates to: LVTSVMVDVDGL*VTSFCWTVDAF
Trigger: GAACGCATCAACTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCATCACGCTGGTGACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000109266.11
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CTGTGTGCTGGTCACCAGCGTGATGGTGGACGTGGATaGGCTCTGGGTGACCTCCTTCTGCTGGACAGCTTT +
Preference number: 6 (lower is better)
Translates to: LCAGHQRDGGRG*ALGDLLLLDSF
Trigger: AAAGCTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCATCACGCTGGTGACCAGCACACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CAA 90 bp GGAGGTGGAAGTCTTGTCGGGTTTTGTCATGATGGGTGTCGGCGCTaGCGGAGAGAAAGGCTTTGGGCTGCCAGACAAGCTCCCGGCTTG +
Preference number: 6 (lower is better)
Translates to: GGGSLVGFCHDGCRR*RRERLWAARQAPGL
Trigger: CAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACTTCCACCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp CTTCTTCTTGGTCTCGTCCACCGCCTGCTGCTTCTCCAGCTCCAGTaGCTTTTTCACCTCGGCAATGAGCCGATCCCGCTCCTGTTCCAG +
Preference number: 6 (lower is better)
Translates to: LLLGLVHRLLLLQLQ*LFHLGNEPIPLLFQ
Trigger: CTGGAACAGGAGCGGGATCGGCTCATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACCAAGAAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GAGTTACTACTGTCCTTGCTCTTCTCCGCTGGCGCCTCTTTCTCTTaGGGGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTGTGTTGGAG +
Preference number: 6 (lower is better)
Translates to: ELLLSLLFSAGASFS*GALAGSEGADCVLE
Trigger: CTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAGTAACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000018050.14
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp CTGAGGCTGCTGCTGCTGGCTCTGCTGTTGGCTCTGCTGTTGTTGTaGCTGCTGCTGCTGCTGGCGCTGTATCTTCTGCATGTGCCACTT +
Preference number: 6 (lower is better)
Translates to: LRLLLLALLLALLLL*LLLLLALYLLHVPL
Trigger: AAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCAGCAGCAGCAGCCTCAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS TCA 72 bp TCTTATCAAGGAAGTCCATGGACTCCTCGCTTGCGCTaGAGTGGCTGGACGGGGCCTTCTTCTCGGGGTCCT +
Preference number: 6 (lower is better)
Translates to: SYQGSPWTPRLR*SGWTGPSSRGP
Trigger: AGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGATAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp CCTCGGGCTCATTCTTGGGCTTCTGTTCCTCATCGCTaGCGTACTCGCTGTCGCTGCTCTCCGACTTTTCGG +
Preference number: 6 (lower is better)
Translates to: PRAHSWASVPHR*RTRCRCSPTFR
Trigger: CCGAAAAGTCGGAGAGCAGCGACAGCGAGTACGTCAGCGATGAGGAACAGAAGCCCAAGAATGAGCCCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CCTTCTCCTGTTTGTCTGTCTTGGCTGTGCCCGCGCTaGGGTTGCTGGGATCCAGCAGCATTTGGTACTGGT +
Preference number: 6 (lower is better)
Translates to: PSPVCLSWLCPR*GCWDPAAFGTG
Trigger: ACCAGTACCAAATGCTGCTGGATCCCAGCAACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGAGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TTGCTTTCTCTACAAAGTCCTTCTCAGGCTCTGGGCTaGCCTTGTCCTTGGCGGGTGTGGGGTCCGGCTTCT +
Preference number: 6 (lower is better)
Translates to: LLSLQSPSQALG*PCPWRVWGPAS
Trigger: AGAAGCCGGACCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAAAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TCCCCTTTATGGCATCCATCATTTTGCTGGTGTACTTaGCAATGTCTGCGGCCACGTCGGCCGAGGCGGTGG +
Preference number: 6 (lower is better)
Translates to: SPLWHPSFCWCT*QCLRPRRPRRW
Trigger: CCACCGCCTCGGCCGACGTGGCCGCAGACATTGCCAAGTACACCAGCAAAATGATGGATGCCATAAAGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp AGGTTCAGGATGCTCCCGGTGGTGGAGGTGGAAGTCTaGTCGGGTTTTGTCATGATGGGTGTCGGCGCTTGC +
Preference number: 6 (lower is better)
Translates to: RFRMLPVVEVEV*SGFVMMGVGAC
Trigger: GCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACTTCCACCTCCACCACCGGGAGCATCCTGAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp ACCGACTCGCTCAGCTCCTTCAGGTCCATCTCGGCCTaGCTTCGATCCAAGTTCAGGTTCAGGATGCTCCCG +
Preference number: 6 (lower is better)
Translates to: TDSLSSFRSISA*LRSKFRFRMLP
Trigger: CGGGAGCATCCTGAACCTGAACTTGGATCGAAGCAAGGCCGAGATGGACCTGAAGGAGCTGAGCGAGTCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GCGGGTGTGGGGTCCGGCTTCTCGCTGACAGGAGAGTaGCTCTTCGCTTCCTCTTTGACCTCTACCTGGTTT +
Preference number: 6 (lower is better)
Translates to: AGVGSGFSLTGE*LFASSLTSTWF
Trigger: AAACCAGGTAGAGGTCAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGAGAAGCCGGACCCCACACCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp TCTGTCATCGTCCCCTTTATGGCATCCATCATTTTGCTGGTGTACTaGGCAATGTCTGCGGCCACGTCGGCCGAGGCGGTGGCAATGGGA +
Preference number: 6 (lower is better)
Translates to: SVIVPFMASIILLVY*AMSAATSAEAVAMG
Trigger: TCCCATTGCCACCGCCTCGGCCGACGTGGCCGCAGACATTGCCAAGTACACCAGCAAAATGATGGATGCCATAAAGGGGACGATGACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp CGGTGGTGGAGGTGGAAGTCTTGTCGGGTTTTGTCATaGTGGGTGTCGGCGCTTGCGGAGAGAAAGGCTTTG +
Preference number: 6 (lower is better)
Translates to: RWWRWKSCRVLS*WVSALAERKAL
Trigger: CAAAGCCTTTCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACTTCCACCTCCACCACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp CCAAGTGGCCTCCTACCCAACTCTCCCAACTGGGGCTaGCCTGTGCTCTTATCAAGGAAGTCCATGGACTCC +
Preference number: 6 (lower is better)
Translates to: PSGLLPNSPNWG*PVLLSRKSMDS
Trigger: GGAGTCCATGGACTTCCTTGATAAGAGCACAGGTCAGCCCCAGTTGGGAGAGTTGGGTAGGAGGCCACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS GCA 72 bp GCTCTGTCATGTTGTCCAAAGAAACGGGCGTCAACCTaGCCGTCTTTGTCCCTCAGAGCTTTCGCTGGCCAG +
Preference number: 6 (lower is better)
Translates to: ALSCCPKKRAST*PSLSLRAFAGQ
Trigger: CTGGCCAGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGACGCCCGTTTCTTTGGACAACATGACAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TCTCGGCCTTGCTTCGATCCAAGTTCAGGTTCAGGATaGTCCCGGTGGTGGAGGTGGAAGTCTTGTCGGGTT +
Preference number: 6 (lower is better)
Translates to: SRPCFDPSSGSG*SRWWRWKSCRV
Trigger: AACCCGACAAGACTTCCACCTCCACCACCGGGAGCATCCTGAACCTGAACTTGGATCGAAGCAAGGCCGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CACCACTGCTTCTTCTTGGTCTCGTCCACCGCCTGCTaGTTCTCCAGCTCCAGTTGCTTTTTCACCTCGGCA +
Preference number: 6 (lower is better)
Translates to: HHCFFLVSSTAC*FSSSSCFFTSA
Trigger: TGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp GCACACCACTGCTTCTTCTTGGTCTCGTCCACCGCCTaGTGCTTCTCCAGCTCCAGTTGCTTTTTCACCTCG +
Preference number: 6 (lower is better)
Translates to: AHHCFFLVSSTA*CFSSSSCFFTS
Trigger: CGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TGGCTCTGCTGTTGGCTCTGCTGTTGTTGTTGCTGCTaGTGCTGCTGGCGCTGTATCTTCTGCATGTGCCAC +
Preference number: 6 (lower is better)
Translates to: WLCCWLCCCCCC*CCWRCIFCMCH
Trigger: GTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAGCCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 72 bp GCCTCCTACCCAACTCTCCCAACTGGGGCTGACCTGTaGTCTTATCAAGGAAGTCCATGGACTCCTCGCTTG +
Preference number: 6 (lower is better)
Translates to: ASYPTLPTGADL*SYQGSPWTPRL
Trigger: CAAGCGAGGAGTCCATGGACTTCCTTGATAAGAGCACAGGTCAGCCCCAGTTGGGAGAGTTGGGTAGGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109262.8
ENSMUST00000153655.8
CDS CAA 72 bp GGGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTGTGTaGGAGGAGTTGCCCTGCGATGACTTATTTCCTGTT +
Preference number: 6 (lower is better)
Translates to: GALAGSEGADCV*EELPCDDLFPV
Trigger: AACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TCTCTCTGGAGCCGGAAAGATCCAGGGTTACTGTCCTaGCTCTTCTCCGCTGGCGCCTCTTTCTCTTTGGGG +
Preference number: 6 (lower is better)
Translates to: SLWSRKDPGLLS*LFSAGASFSLG
Trigger: CCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAGTAACCCTGGATCTTTCCGGCTCCAGAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088113.11
CDS CAA 90 bp TCCAAGTTCAGGTTCAGGATGCTCCCGGTGGTGGAGGTGGAAGTCTaGTCGGGTTTTGTCATGATGGGTGTCGGCGCTTGCGGAGAGAAA +
Preference number: 6 (lower is better)
Translates to: SKFRFRMLPVVEVEV*SGFVMMGVGACGEK
Trigger: TTTCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACTTCCACCTCCACCACCGGGAGCATCCTGAACCTGAACTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GCTTCCTCTTTGACCTCTACCTGGTTTGTGGGTTTGGGCTTCCTTTaGATGGCAGGGGCCTCTTTGTCCACCCGACTCCCCTCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: ASSLTSTWFVGLGFL*MAGASLSTRLPSLS
Trigger: GGACAAAGAGGGGAGTCGGGTGGACAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGAGGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp GCTGTGCTTTGCAACTCTCTATGGTCTTGTCCAGGTTaGGCTGGAACCGGCTTCGAATCTGCCGCTTGGGAG +
Preference number: 6 (lower is better)
Translates to: AVLCNSLWSCPG*AGTGFESAAWE
Trigger: CTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTGCAAAGCACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp GGGCGCTGGCCGGTTCTGAAGGTGCTGACTGTGTGTTaGAGGAGTTGCCCTGCGATGACTTATTTCCTGTTT +
Preference number: 6 (lower is better)
Translates to: GRWPVLKVLTVC*RSCPAMTYFLF
Trigger: AAACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAACACACAGTCAGCACCTTCAGAACCGGCCAGCGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp AGTCTTGTCGGGTTTTGTCATGATGGGTGTCGGCGCTaGCGGAGAGAAAGGCTTTGGGCTGCCAGACAAGCT +
Preference number: 6 (lower is better)
Translates to: SLVGFCHDGCRR*RRERLWAARQA
Trigger: AGCTTGTCTGGCAGCCCAAAGCCTTTCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GGGTCCGGCTTCTCGCTGACAGGAGAGTTGCTCTTCGCTTCCTCTTaGACCTCTACCTGGTTTGTGGGTTTGGGCTTCCTTTTGATGGCA +
Preference number: 6 (lower is better)
Translates to: GSGFSLTGELLFASS*TSTWFVGLGFLLMA
Trigger: TGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGAGAAGCCGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp CATGTGCCACTTTTGGGAGGACGTTTGAAACTTACTTaGTGCGTTCCACACGACCCGCTGCACAGCTGGGAC +
Preference number: 6 (lower is better)
Translates to: HVPLLGGRLKLT*CVPHDPLHSWD
Trigger: GTCCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAAGTGGCACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 72 bp TGCTGTTGGCTCTGCTGTTGTTGTTGCTGCTGCTGCTaGTGGCGCTGTATCTTCTGCATGTGCCACTTTTGG +
Preference number: 6 (lower is better)
Translates to: CCWLCCCCCCCC*WRCIFCMCHFW
Trigger: CCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 72 bp CTCTGCTGTTGGCTCTGCTGTTGTTGTTGCTGCTGCTaGTGCTGGCGCTGTATCTTCTGCATGTGCCACTTT +
Preference number: 6 (lower is better)
Translates to: LCCWLCCCCCCC*CWRCIFCMCHF
Trigger: AAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACAGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CCA 72 bp GCTTTGCAACTCTCTATGGTCTTGTCCAGGTTGAGCTaGAACCGGCTTCGAATCTGCCGCTTGGGAGAGATG +
Preference number: 6 (lower is better)
Translates to: ALQLSMVLSRLS*NRLRICRLGEM
Trigger: CATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTGCAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TGTTGGCTCTGCTGTTGTTGTTGCTGCTGCTGCTGCTaGCGCTGTATCTTCTGCATGTGCCACTTTTGGGAG +
Preference number: 6 (lower is better)
Translates to: CWLCCCCCCCCC*RCIFCMCHFWE
Trigger: CTCCCAAAAGTGGCACATGCAGAAGATACAGCGCCAGCAGCAGCAGCAGCAACAACAACAGCAGAGCCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CAA 72 bp GCATGTGCCACTTTTGGGAGGACGTTTGAAACTTACTaGATGCGTTCCACACGACCCGCTGCACAGCTGGGA +
Preference number: 6 (lower is better)
Translates to: ACATFGRTFETY*MRSTRPAAQLG
Trigger: TCCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAAGTGGCACATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CAA 90 bp TGTCCCTCAGAGCTTTCGCTGGCCAGAATGGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCGGATTGCTACAGGGCTCACAGAACC +
Preference number: 6 (lower is better)
Translates to: CPSELSLARMEILSV*PRPKGADCYRAHRT
Trigger: GGTTCTGTGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAAGCTCTGAGGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp TGCTTCATCTCAGCGAGCTCCTGCTGGTGCAGCCACTaGAGTTTCTCAATCTCAATCCTCAGCCTTCGAATC +
Preference number: 6 (lower is better)
Translates to: CFISASSCWCSH*SFSISILSLRI
Trigger: GATTCGAAGGCTGAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp GTCAACTCCAGGTTGTGCTTCATCTCAGCGAGCTCCTaGTGGTGCAGCCACTGCAGTTTCTCAATCTCAATC +
Preference number: 6 (lower is better)
Translates to: VNSRLCFISASS*WCSHCSFSISI
Trigger: GATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCACAACCTGGAGTTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp AACTCCAGGTTGTGCTTCATCTCAGCGAGCTCCTGCTaGTGCAGCCACTGCAGTTTCTCAATCTCAATCCTC +
Preference number: 6 (lower is better)
Translates to: NSRLCFISASSC*CSHCSFSISIL
Trigger: GAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGAGCTCGCTGAGATGAAGCACAACCTGGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GTGATAAACCCGGGGACAGAGCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAACCCAGCAATAGAAGTC +
Preference number: 6 (lower is better)
Translates to: VINPGTELTAKD*SFPVTNPAIEV
Trigger: GACTTCTATTGCTGGGTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAGCTCTGTCCCCGGGTTTATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GAGCTTTCGCTGGCCAGAATGGAAATCCTTTCAGTTTaGCCCAGACCAAAGGGTGCGGATTGCTACAGGGCT +
Preference number: 6 (lower is better)
Translates to: ELSLARMEILSV*PRPKGADCYRA
Trigger: AGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTCCATTCTGGCCAGCGAAAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TGTTGTCCAAAGAAACGGGCGTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCTGGCCAGAATGGAAAT +
Preference number: 6 (lower is better)
Translates to: CCPKKRASTCPS*SLRAFAGQNGN
Trigger: ATTTCCATTCTGGCCAGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGACGCCCGTTTCTTTGGACAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TTCGCTTCCTCTTTGACCTCTACCTGGTTTGTGGGTTaGGGCTTCCTTTTGATGGCAGGGGCCTCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: FASSLTSTWFVG*GFLLMAGASLS
Trigger: GGACAAAGAGGCCCCTGCCATCAAAAGGAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp ACACTTAGCGTGATAAACCCGGGGACAGAGCTCACAGCAAAGGACTaGTCCTTCCCGGTGACAAACCCAGCAATAGAAGTCATTCCGTCC +
Preference number: 6 (lower is better)
Translates to: TLSVINPGTELTAKD*SFPVTNPAIEVIPS
Trigger: GGACGGAATGACTTCTATTGCTGGGTTTGTCACCGGGAAGGACAAGTCCTTTGCTGTGAGCTCTGTCCCCGGGTTTATCACGCTAAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GCTCTGTCATGTTGTCCAAAGAAACGGGCGTCAACCTGCCCGTCTTaGTCCCTCAGAGCTTTCGCTGGCCAGAATGGAAATCCTTTCAGT +
Preference number: 6 (lower is better)
Translates to: ALSCCPKKRASTCPS*SLRAFAGQNGNPFS
Trigger: ACTGAAAGGATTTCCATTCTGGCCAGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGACGCCCGTTTCTTTGGACAACATGACAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GTATCTTCTGCATGTGCCACTTTTGGGAGGACGTTTGAAACTTACTaGATGCGTTCCACACGACCCGCTGCACAGCTGGGACAGTCTCCT +
Preference number: 6 (lower is better)
Translates to: VSSACATFGRTFETY*MRSTRPAAQLGQSP
Trigger: AGGAGACTGTCCCAGCTGTGCAGCGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAAGTGGCACATGCAGAAGATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS CAA 90 bp TTCGGGGCCGTTTTCTCTGTAGAGACAGGATCTTCCTTAGGTTCTTaGGAGCGAGTAGAGATATCCATTCCCTCCACCACCTCCTGCTCG +
Preference number: 6 (lower is better)
Translates to: FGAVFSVETGSSLGS*ERVEISIPSTTSCS
Trigger: CGAGCAGGAGGTGGTGGAGGGAATGGATATCTCTACTCGCTCCAAAGAACCTAAGGAAGATCCTGTCTCTACAGAGAAAACGGCCCCGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153655.8
CDS CAA 90 bp TTTATGCCTAGCTGTGCTTTGCAACTCTCTATGGTCTTGTCCAGGTaGAGCTGGAACCGGCTTCGAATCTGCCGCTTGGGAGAGATGAGA +
Preference number: 6 (lower is better)
Translates to: FMPSCALQLSMVLSR*SWNRLRICRLGEMR
Trigger: TCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp GAGATCTCATTTATGCCTAGCTGTGCTTTGCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAACCGGCTTCGAATCTGCCGCTTGGGA +
Preference number: 6 (lower is better)
Translates to: EISFMPSCALQLSMV*SRLSWNRLRICRLG
Trigger: TCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCATAAATGAGATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp GTCCGTCCTGCGGTACAACATCAACAGGGTCTGTGGTaGGTGGCTGCTTCATATAGTAAAACGGACCATGTC +
Preference number: 6 (lower is better)
Translates to: VRPAVQHQQGLW*VAASYSKTDHV
Trigger: GACATGGTCCGTTTTACTATATGAAGCAGCCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS GCA 72 bp ACAAGTTCGCTCTCCGAGTCCGAATCCAAGCCCAAGTaGACTGTGGGAGAATCCGTTTCATCCTTTCCTTTC +
Preference number: 6 (lower is better)
Translates to: TSSLSESESKPK*TVGESVSSFPF
Trigger: GAAAGGAAAGGATGAAACGGATTCTCCCACAGTGCACTTGGGCTTGGATTCGGACTCGGAGAGCGAACTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp GAGCGAGTAGAGATATCCATTCCCTCCACCACCTCCTaGTCGGTTTTTATTTCCTCTTCAGCCAAGCTTCCC +
Preference number: 6 (lower is better)
Translates to: ERVEISIPSTTS*SVFISSSAKLP
Trigger: GGGAAGCTTGGCTGAAGAGGAAATAAAAACCGAGCAGGAGGTGGTGGAGGGAATGGATATCTCTACTCGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136842.2
CDS CCA 72 bp GCAGGTAGGACAGTTGTTCAATGGTCAGCATGGTCATaGCTTTGCTCTGCGTCTCGATGCATTCTGCTACTG +
Preference number: 6 (lower is better)
Translates to: AGRTVVQWSAWS*LCSASRCILLL
Trigger: CAGTAGCAGAATGCATCGAGACGCAGAGCAAAGCCATGACCATGCTGACCATTGAACAACTGTCCTACCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp CGCTCTCCGAGTCCGAATCCAAGCCCAAGTGCACTGTaGGAGAATCCGTTTCATCCTTTCCTTTCAGTTTGT +
Preference number: 6 (lower is better)
Translates to: RSPSPNPSPSAL*ENPFHPFLSVC
Trigger: ACAAACTGAAAGGAAAGGATGAAACGGATTCTCCCACAGTGCACTTGGGCTTGGATTCGGACTCGGAGAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TTCTCGCTGACAGGAGAGTTGCTCTTCGCTTCCTCTTaGACCTCTACCTGGTTTGTGGGTTTGGGCTTCCTT +
Preference number: 6 (lower is better)
Translates to: FSLTGELLFASS*TSTWFVGLGFL
Trigger: AAGGAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAGCGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp ACAAAGGTCCATGGGGTGGAAAATATATTCTGCATAGTCAGGGTGTaGCTCCAATGGAACAGGCTTCTGGAATGCATCCGTCCCTGGCTG +
Preference number: 6 (lower is better)
Translates to: TKVHGVENIFCIVRV*LQWNRLLECIRPWL
Trigger: CAGCCAGGGACGGATGCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCTGACTATGCAGAATATATTTTCCACCCCATGGACCTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS TCA 72 bp TGTATCTTCTGCATGTGCCACTTTTGGGAGGACGTTTaGAACTTACTTGATGCGTTCCACACGACCCGCTGC +
Preference number: 6 (lower is better)
Translates to: CIFCMCHFWEDV*NLLDAFHTTRC
Trigger: GCAGCGGGTCGTGTGGAACGCATCAAGTAAGTTTCAAACGTCCTCCCAAAAGTGGCACATGCAGAAGATACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099084.9
ENSMUST00000109269.8
CDS GCA 72 bp GAGCGAGTAGAGATATCCATTCCCTCCACCACCTCCTaGTCGGTTTTTATTTCCTCTTCAGCCAAGCTCTGT +
Preference number: 6 (lower is better)
Translates to: ERVEISIPSTTS*SVFISSSAKLC
Trigger: ACAGAGCTTGGCTGAAGAGGAAATAAAAACCGAGCAGGAGGTGGTGGAGGGAATGGATATCTCTACTCGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088113.11
ENSMUST00000177633.8
CDS CAA 72 bp TTTATGCCTAGCTGTGCTTTGCAACTCTCTATGGTCTaGTCCAGGTTGAGCTGGAACCGGCTTCGAATCTGC +
Preference number: 6 (lower is better)
Translates to: FMPSCALQLSMV*SRLSWNRLRIC
Trigger: GCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACAAGACCATAGAGAGTTGCAAAGCACAGCTAGGCATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp CATCCTTTCCTTTCAGTTTGTCCTTTGTGGGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCTTCTCAGGCTCTGGGCTGGCCTTGT +
Preference number: 6 (lower is better)
Translates to: HPFLSVCPLWDEVMA*LSLQSPSQALGWPC
Trigger: ACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAGGACAAACTGAAAGGAAAGGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp AATGGAAATCCTTTCAGTTTTGCCCAGACCAAAGGGTaGGGATTGCTACAGGGCTCACAGAACCAGTTGTCT +
Preference number: 6 (lower is better)
Translates to: NGNPFSFAQTKG*GLLQGSQNQLS
Trigger: AGACAACTGGTTCTGTGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGCAAAACTGAAAGGATTTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp AATCTTCTCACATTCAGGACAAAACCAGTCCCCCTCTaGCTCCGATGTCAGTCTCAGACACTTAGCGTGATA +
Preference number: 6 (lower is better)
Translates to: NLLTFRTKPVPL*LRCQSQTLSVI
Trigger: TATCACGCTAAGTGTCTGAGACTGACATCGGAGCCAGAGGGGGACTGGTTTTGTCCTGAATGTGAGAAGATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp GAAAATATATTCTGCATAGTCAGGGTGTTGCTCCAATaGAACAGGCTTCTGGAATGCATCCGTCCCTGGCTG +
Preference number: 6 (lower is better)
Translates to: ENIFCIVRVLLQ*NRLLECIRPWL
Trigger: CAGCCAGGGACGGATGCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCTGACTATGCAGAATATATTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp CTTTCAGTTTGTCCTTTGTGGGATGAGGTGATGGCTTaGCTTTCTCTACAAAGTCCTTCTCAGGCTCTGGGC +
Preference number: 6 (lower is better)
Translates to: LSVCPLWDEVMA*LSLQSPSQALG
Trigger: GCCCAGAGCCTGAGAAGGACTTTGTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAGGACAAACTGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp TGGCTGCTTCATTTTCTGAATGGCAAACTTGAGCAGGTAGGACAGTaGTTCAATGGTCAGCATGGTCATGGCTTTGCTCTGCGTCTCGAT +
Preference number: 6 (lower is better)
Translates to: WLLHFLNGKLEQVGQ*FNGQHGHGFALRLD
Trigger: ATCGAGACGCAGAGCAAAGCCATGACCATGCTGACCATTGAACAACTGTCCTACCTGCTCAAGTTTGCCATTCAGAAAATGAAGCAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 90 bp AGGGTGCGGATTGCTACAGGGCTCACAGAACCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACATTCTGGACAGACTTCGATTTCATT +
Preference number: 6 (lower is better)
Translates to: RVRIATGLTEPVVSF*ASCKITFWTDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCCCTGTAGCAATCCGCACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CAATCTCAATCCTCAGCCTTCGAATCTCAGCTATTGTaGTCCCAGTGGTGTTCTTGGAGAGGTCATTGTAGA +
Preference number: 6 (lower is better)
Translates to: QSQSSAFESQLL*SQWCSWRGHCR
Trigger: TCTACAATGACCTCTCCAAGAACACCACTGGGAGCACAATAGCTGAGATTCGAAGGCTGAGGATTGAGATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp TTCGAATCTCAGCTATTGTGCTCCCAGTGGTGTTCTTaGAGAGGTCATTGTAGATTTCTGTCATCGTCCCCT +
Preference number: 6 (lower is better)
Translates to: FESQLLCSQWCS*RGHCRFLSSSP
Trigger: AGGGGACGATGACAGAAATCTACAATGACCTCTCCAAGAACACCACTGGGAGCACAATAGCTGAGATTCGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp CATGGGGTGGAAAATATATTCTGCATAGTCAGGGTGTaGCTCCAATGGAACAGGCTTCTGGAATGCATCCGT +
Preference number: 6 (lower is better)
Translates to: HGVENIFCIVRV*LQWNRLLECIR
Trigger: ACGGATGCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCTGACTATGCAGAATATATTTTCCACCCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp TCTCAATCTCAATCCTCAGCCTTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCTTGGAGAGGTCATTGT +
Preference number: 6 (lower is better)
Translates to: SQSQSSAFESQL*CSQWCSWRGHC
Trigger: ACAATGACCTCTCCAAGAACACCACTGGGAGCACAATAGCTGAGATTCGAAGGCTGAGGATTGAGATTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GTTTTCTCTGTAGAGACAGGATCTTCCTTAGGTTCTTaGGAGCGAGTAGAGATATCCATTCCCTCCACCACC +
Preference number: 6 (lower is better)
Translates to: VFSVETGSSLGS*ERVEISIPSTT
Trigger: GGTGGTGGAGGGAATGGATATCTCTACTCGCTCCAAAGAACCTAAGGAAGATCCTGTCTCTACAGAGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153655.8
CDS CAA 90 bp ACTGCAGTTTCTCAATCTCAATCCTCAGCCTTCGAATCTCAGCTATaGTGCTCCCAGTGGTGTTCTTGGAGAGGTCATTGTAGATTTCTG +
Preference number: 6 (lower is better)
Translates to: TAVSQSQSSAFESQL*CSQWCSWRGHCRFL
Trigger: CAGAAATCTACAATGACCTCTCCAAGAACACCACTGGGAGCACAATAGCTGAGATTCGAAGGCTGAGGATTGAGATTGAGAAACTGCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp CATGGTCATGGCTTTGCTCTGCGTCTCGATGCATTCTaGTACTGTAATCTTCTCACATTCAGGACAAAACCA +
Preference number: 6 (lower is better)
Translates to: HGHGFALRLDAF*YCNLLTFRTKP
Trigger: TGGTTTTGTCCTGAATGTGAGAAGATTACAGTAGCAGAATGCATCGAGACGCAGAGCAAAGCCATGACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp AGTTGTTCAATGGTCAGCATGGTCATGGCTTTGCTCTaGGTCTCGATGCATTCTGCTACTGTAATCTTCTCA +
Preference number: 6 (lower is better)
Translates to: SCSMVSMVMALL*VSMHSATVIFS
Trigger: TGAGAAGATTACAGTAGCAGAATGCATCGAGACGCAGAGCAAAGCCATGACCATGCTGACCATTGAACAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp ATTGCTACAGGGCTCACAGAACCAGTTGTCTCGTTTTaGGCAAGCTGCAAGATAACATTCTGGACAGACTTC +
Preference number: 6 (lower is better)
Translates to: IATGLTEPVVSF*ASCKITFWTDF
Trigger: GAAGTCTGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCCCTGTAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS GCA 72 bp GGGCTCACAGAACCAGTTGTCTCGTTTTTGGCAAGCTaGAAGATAACATTCTGGACAGACTTCGATTTCATT +
Preference number: 6 (lower is better)
Translates to: GLTEPVVSFLAS*KITFWTDFDFI
Trigger: AATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CCA 72 bp GTTGTCTCGTTTTTGGCAAGCTGCAAGATAACATTCTaGACAGACTTCGATTTCATTCATCTCGTGCTCACA +
Preference number: 6 (lower is better)
Translates to: VVSFLASCKITF*TDFDFIHLVLT
Trigger: TGTGAGCACGAGATGAATGAAATCGAAGTCTGTCCAGAATGTTATCTTGCAGCTTGCCAAAAACGAGACAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp GAGAATCCGTTTCATCCTTTCCTTTCAGTTTGTCCTTaGTGGGATGAGGTGATGGCTTTGCTTTCTCTACAA +
Preference number: 6 (lower is better)
Translates to: ENPFHPFLSVCP*WDEVMALLSLQ
Trigger: TTGTAGAGAAAGCAAAGCCATCACCTCATCCCACAAAGGACAAACTGAAAGGAAAGGATGAAACGGATTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp AAGTCATTCCGTCCGTCCTGTTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTTTTCTTTTTAATGGGG +
Preference number: 6 (lower is better)
Translates to: KSFRPSCSLLLL*SKPGFFFFLMG
Trigger: CCCCATTAAAAAGAAAAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGAACAGGACGGACGGAATGACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000136842.2
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8
CDS CAA 72 bp CCATGTCTTAGCTCTGACTGTTCCTTATTGCTACTGTaGAGTAAGCCGGGTTTCTTTTTCTTTTTAATGGGG +
Preference number: 6 (lower is better)
Translates to: PCLSSDCSLLLL*SKPGFFFFLMG
Trigger: CCCCATTAAAAAGAAAAAGAAACCCGGCTTACTCAACAGTAGCAATAAGGAACAGTCAGAGCTAAGACATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018050.14
ENSMUST00000109266.11
ENSMUST00000109269.8
CDS CAA 72 bp CTTCCTCCGTATGTTCTCCACGTAAACTTCCATCTCTaGCATGGCGCTGTTGAAGATACTTTTAGTCTTTTT +
Preference number: 6 (lower is better)
Translates to: LPPYVLHVNFHL*HGAVEDTFSLF
Trigger: AAAAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTACGTGGAGAACATACGGAGGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000018050.14
ENSMUST00000088113.11
ENSMUST00000099084.9
ENSMUST00000109262.8
ENSMUST00000109266.11
ENSMUST00000109269.8
ENSMUST00000153655.8
ENSMUST00000170272.8
ENSMUST00000177633.8