RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZMYM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042446

Ensembl transcript IDs: ENSMUST00000106108.9, ENSMUST00000135003.2

Found 325 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTTGTTaGGTTTGTTCCTCACTCCCCCTAGAGGGAGGAAGGAGTAAGTAT +
Preference number: 1 (lower is better)
Translates to: DRDQGRDRPSSGASC*VCSSLPLEGGRSKY
Trigger: ATACTTACTCCTTCCTCCCTCTAGGGGGAGTGAGGAACAAACCCAACAACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 90 bp CCTCTCCCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTaGAGTCCACTACGGCTCAGAGCCACCGTTTTTCCCACCAAACAA +
Preference number: 1 (lower is better)
Translates to: PLPPNPLTLLPSGYI*SPLRLRATVFPTKQ
Trigger: TTGTTTGGTGGGAAAAACGGTGGCTCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGGGAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 90 bp GTGACCTCTCCTGACTTTCATGGACAGCTTGCTCAAGTAGCCTACTaGAGCCAGGGTCTCACTGCAAAGCTACCCCTTCTAACTAAGGTT +
Preference number: 1 (lower is better)
Translates to: VTSPDFHGQLAQVAY*SQGLTAKLPLLTKV
Trigger: AACCTTAGTTAGAAGGGGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCATGAAAGTCAGGAGAGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 90 bp GCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAACAGCTGAGTaGATCACAGCTTGGTGCATACCAGTGTGCATGAAAACGGGAGCT +
Preference number: 1 (lower is better)
Translates to: ASQEDLHFNIFPTAE*ITAWCIPVCMKTGA
Trigger: AGCTCCCGTTTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR TCA 90 bp ACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAACAGCTaGGTGCATCACAGCTTGGTGCATACCAGTGTGCATGAAAACGGG +
Preference number: 1 (lower is better)
Translates to: TSKSRGLAFQHLSNS*VHHSLVHTSVHENG
Trigger: CCCGTTTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 90 bp TCAGAGCCACCGTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTaGATTTCAACATCTTTCCAACAGCTGAGTGCATCACAGCTTGGT +
Preference number: 1 (lower is better)
Translates to: SEPPFFPPNKQVKRT*ISTSFQQLSASQLG
Trigger: ACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAACGGTGGCTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR TCA 90 bp TTTAACATTAGTTTAGGGTCTGAAGCCCCTGCACTAACATGCAGCTaGAGCCCGATACAGTCGTTTATCTGGATAGTGGTTGTTCTCTTA +
Preference number: 1 (lower is better)
Translates to: FNISLGSEAPALTCS*SPIQSFIWIVVVLL
Trigger: TAAGAGAACAACCACTATCCAGATAAACGACTGTATCGGGCTTCAGCTGCATGTTAGTGCAGGGGCTTCAGACCCTAAACTAATGTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTTCTGTGCAGCCAGCTaGGGCCAGGAGACAGCAGCA +
Preference number: 2 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRFCAAS*GQETAA
Trigger: TGCTGCTGTCTCCTGGCCTCAGCTGGCTGCACAGAA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGGAGGCCCCACTTCTGTaGAGCCAGCTGAGGCCAGGA +
Preference number: 2 (lower is better)
Translates to: PIDLCELESGIQQQKGRMEAPLL*SQLRPG
Trigger: TCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTC...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTTCTGTGCAGCCAGCTaGGGCCAGGAGACAGCAGCA +
Preference number: 2 (lower is better)
Translates to: PIDLCELESGIQQQKGRMFCAAS*GQETAA
Trigger: TGCTGCTGTCTCCTGGCCTCAGCTGGCTGCACAGAA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR CAA 90 bp TCCTCTCCCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTaGCAGTCCACTACGGCTCAGAGCCACCGTTTTTCCCACCAAACA +
Preference number: 2 (lower is better)
Translates to: SSPSQSTHPSPLRLH*QSTTAQSHRFSHQT
Trigger: TGTTTGGTGGGAAAAACGGTGGCTCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGGGAGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTCTCTCAGCTGTGCAGTaGCCTCTCCTGACTTTCATG +
Preference number: 2 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASLSAVQ*PLLTFM
Trigger: CATGAAAGTCAGGAGAGGTCACTGCACAGCTGAGAG...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTTTCGAAGATGTCTATaGCCACTCCTCTCCCTCCCA +
Preference number: 2 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRFRRCL*PLLSLP
Trigger: TGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTGCAGTGACCTCTCCTaGCTTTCATGGACAGCTTGC +
Preference number: 2 (lower is better)
Translates to: PIDLCELESGIQQQKGRMCSDLS*LSWTAC
Trigger: GCAAGCTGTCCATGAAAGTCAGGAGAGGTCACTGCA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCACCCTCAGGTTACATTTaGAGTCCACTACGGCTCAGA +
Preference number: 2 (lower is better)
Translates to: EMRETPGNVTHTCALRFPPSGYI*SPLRLR
Trigger: TCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGG...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTGGTGCATACCAGTGTaGATGAAAACGGGAGCTTTC +
Preference number: 2 (lower is better)
Translates to: WTACSSSLLQPGSHCKATWCIPV*MKTGAF
Trigger: GAAAGCTCCCGTTTTCATGCACACTGGTATGCACCA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTACAGGGAAGAAAGGATaGCATGGGGAAAACTGGACA +
Preference number: 2 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASTGKKG*HGENWT
Trigger: TGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGCTTCCCATAGACCTGTaGGAGCTAGAGTCTGGAATA +
Preference number: 2 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRLPIDL*ELESGI
Trigger: TATTCCAGACTCTAGCTCGCACAGGTCTATGGGAAG...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAGGTCGCATGGATGTGTaGGGTCAGTCACCTCAGACT +
Preference number: 2 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGGRMDV*GQSPQT
Trigger: AGTCTGAGGTGACTGACCTCACACATCCATGCGACC...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTCACACAAATCAGAACTaGTACAGCAGGATGACACCT +
Preference number: 2 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASHTNQN*YSRMTP
Trigger: AGGTGTCATCCTGCTGTATCAGTTCTGATTTGTGTG...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTGCATCACAGCTTGGTaGATACCAGTGTGCATGAAA +
Preference number: 2 (lower is better)
Translates to: WTACSSSLLQPGSHCKATCITAW*IPVCMK
Trigger: TTTCATGCACACTGGTATGCACCAAGCTGTGATGCA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAGCTCAAGTAGCCTACTaGAGCCAGGGTCTCACTGCA +
Preference number: 2 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGAQVAY*SQGLTA
Trigger: TGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGC...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTGAAGAAAGGATGCCATaGGGAAAACTGGACACAAAG +
Preference number: 2 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASEERMP*GKLDTK
Trigger: CTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTC...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGCAGCCAGGGTCTCACTaGAAAGCTACCCCTTCTAAC +
Preference number: 2 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGQPGSH*KATPSN
Trigger: GTTAGAAGGGGTAGCTTTGCAGTGAGACCCTGGCTG...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGCCACAATTCCTAACTTaGAAGTTCCCTGGGGCAATA +
Preference number: 2 (lower is better)
Translates to: PIDLCELESGIQQQKGRMPQFLT*KFPGAI
Trigger: TATTGCCCCAGGGAACTTGCAAGTTAGGAATTGTGG...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTAGGTCAACTTCCAAATaGTTTTACACAGGAACCTAC +
Preference number: 2 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASRSTSK*FYTGTY
Trigger: GTAGGTTCCTGTGTAAAAGCATTTGGAAGTTGACCT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGAGGTCAACTTCCAAATaGTTTTACACAGGAACCTAC +
Preference number: 2 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRRSTSK*FYTGTY
Trigger: GTAGGTTCCTGTGTAAAAGCATTTGGAAGTTGACCT...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATGGTGCATACCAGTGTaGATGAAAACGGGAGCTTTC +
Preference number: 2 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGWCIPV*MKTGAF
Trigger: GAAAGCTCCCGTTTTCATGCACACTGGTATGCACCA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR GCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTTGCATCACAGCTTGGTaGATACCAGTGTGCATGAAA +
Preference number: 2 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSCITAW*IPVCMK
Trigger: TTTCATGCACACTGGTATGCACCAAGCTGTGATGCA...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGCTTGAGTATTTTTATTaGATCTTCCAGGCTGAGTCT +
Preference number: 2 (lower is better)
Translates to: PIDLCELESGIQQQKGRMLEYFY*IFQAES
Trigger: AGACTCAGCCTGGAAGATCCAATAAAAATACTCAAG...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGCACCACTCAGAAACTaGTTAGTCTTTCGAAGATGT +
Preference number: 2 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGAPLRN*LVFRRC
Trigger: ACATCTTCGAAAGACTAACCAGTTTCTGAGTGGTGC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCGCACCACTCAGAAACTaGTTAGTCTTTCGAAGATGT +
Preference number: 2 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSAPLRN*LVFRRC
Trigger: ACATCTTCGAAAGACTAACCAGTTTCTGAGTGGTGC...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR TCA 72 bp GGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTaGGGCCAGGAGACAGCAGCACCCAGAGAAGCGGGC +
Preference number: 3 (lower is better)
Translates to: GHKGRPHFCAAS*GQETAAPREAG
Trigger: GCCCGCTTCTCTGGGTGCTGCTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR CCA 72 bp CAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTTGTTaGGTTTGTTCCTCACTCCCCCTAGAGGGAGGAAGG +
Preference number: 3 (lower is better)
Translates to: QGRDRPSSGASC*VCSSLPLEGGR
Trigger: CCTTCCTCCCTCTAGGGGGAGTGAGGAACAAACCCAACAACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp GGGAGACACCTGGTAATGTCACACACACCTGTGCCTTaGGCTTCCCATAGACCTGTGCGAGCTAGAGTCTGG +
Preference number: 3 (lower is better)
Translates to: GRHLVMSHTPVP*ASHRPVRARVW
Trigger: CCAGACTCTAGCTCGCACAGGTCTATGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp CCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTaGAGTCCACTACGGCTCAGAGCCACCGTTTTTCCC +
Preference number: 3 (lower is better)
Translates to: PNPLTLLPSGYI*SPLRLRATVFP
Trigger: GGGAAAAACGGTGGCTCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CAA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGGCAAGTCAAGAGGACTaGCATTTCAACATCTTTCCA +
Preference number: 3 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQASQED*HFNIFP
Trigger: TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGC...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp CACACACACCTGTGCCTTGCGCTTCCCATAGACCTGTaGGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGT +
Preference number: 3 (lower is better)
Translates to: HTHLCLALPIDL*ELESGIQQQKG
Trigger: ACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGGAAGCGCAAGGCACAGGTGTGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR TCA 72 bp TCTGGAATACAGCAGCAGAAAGGTCGCATGGATGTGTaGGGTCAGTCACCTCAGACTCCAGCCCCACAATTC +
Preference number: 3 (lower is better)
Translates to: SGIQQQKGRMDV*GQSPQTPAPQF
Trigger: GAATTGTGGGGCTGGAGTCTGAGGTGACTGACCTCACACATCCATGCGACCTTTCTGCTGCTGTATTCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp CCTGACTTTCATGGACAGCTTGCTCAAGTAGCCTACTaGAGCCAGGGTCTCACTGCAAAGCTACCCCTTCTA +
Preference number: 3 (lower is better)
Translates to: PDFHGQLAQVAY*SQGLTAKLPLL
Trigger: TAGAAGGGGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCATGAAAGTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CAA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGCATAATACTGTGTCTTaGTGGGATCGCCCACACATT +
Preference number: 3 (lower is better)
Translates to: PIDLCELESGIQQQKGRMHNTVS*WDRPHI
Trigger: AATGTGTGGGCGATCCCACAAAGACACAGTATTATG...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CAA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTGTTTTGGATGGTTTATaGGTGACTTATCAGACAGGC +
Preference number: 3 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASVLDGL*VTYQTG
Trigger: GCCTGTCTGATAAGTCACCAATAAACCATCCAAAAC...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp CAGTCACCTCAGACTCCAGCCCCACAATTCCTAACTTaGAAGTTCCCTGGGGCAATAAGGTCAACTTCCAAA +
Preference number: 3 (lower is better)
Translates to: QSPQTPAPQFLT*KFPGAIRSTSK
Trigger: TTTGGAAGTTGACCTTATTGCCCCAGGGAACTTGCAAGTTAGGAATTGTGGGGCTGGAGTCTGAGGTGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR TCA 72 bp AGTTTAGGGTCTGAAGCCCCTGCACTAACATGCAGCTaGAGCCCGATACAGTCGTTTATCTGGATAGTGGTT +
Preference number: 3 (lower is better)
Translates to: SLGSEAPALTCS*SPIQSFIWIVV
Trigger: AACCACTATCCAGATAAACGACTGTATCGGGCTTCAGCTGCATGTTAGTGCAGGGGCTTCAGACCCTAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp AACATCTTTCCAACAGCTGAGTGCATCACAGCTTGGTaGATACCAGTGTGCATGAAAACGGGAGCTTTCCTT +
Preference number: 3 (lower is better)
Translates to: NIFPTAECITAW*IPVCMKTGAFL
Trigger: AAGGAAAGCTCCCGTTTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR CCA 72 bp TTCAACATCTTTCCAACAGCTGAGTGCATCACAGCTTaGTGCATACCAGTGTGCATGAAAACGGGAGCTTTC +
Preference number: 3 (lower is better)
Translates to: FNIFPTAECITA*CIPVCMKTGAF
Trigger: GAAAGCTCCCGTTTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR GCA 72 bp GAGGACTTGCATTTCAACATCTTTCCAACAGCTGAGTaGATCACAGCTTGGTGCATACCAGTGTGCATGAAA +
Preference number: 3 (lower is better)
Translates to: EDLHFNIFPTAE*ITAWCIPVCMK
Trigger: TTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAAATGCAAGTCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCGCAAGTCAAGAGGACTaGCATTTCAACATCTTTCCA +
Preference number: 3 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSASQED*HFNIFP
Trigger: TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGC...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCCTTCACATAAGTAGGTaGGCAGTGAAAATCAATCCA +
Preference number: 3 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSLHISR*AVKINP
Trigger: TGGATTGATTTTCACTGCCAACCTACTTATGTGAAG...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGAACAAGTCTTCTTGGTaGGGGGAGGCGGTGGGCGGG +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRNKSSW*GEAVGG
Trigger: CCCGCCCACCGCCTCCCCTCACCAAGAAGACTTGTT...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGAAGCGCCCAGCTGTTTaGACTCCCACAGATGCTCTT +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQKRPAV*TPTDAL
Trigger: AAGAGCATCTGTGGGAGTGCAAACAGCTGGGCGCTT...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGCGGTGGGCGGGCAGGTaGAACTGTGTATCCCGTGAG +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRRWAGR*NCVSRE
Trigger: CTCACGGGATACACAGTTCCACCTGCCCGCCCACCG...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTGGGCAGCCAACCTCTaGAGCCCAGCAGCAGCGGAG +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMWAANL*SPAAAE
Trigger: CTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGCCCA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGTGGGTCAAAAGATTCTaGTGGGAAGTCTGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQWVKRF*WEVCLQ
Trigger: CTGGAGGCAGACTTCCCATCAGAATCTTTTGACCCA...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCCGGGCAAACCCAACATaGTGGGACTGGGCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATRANPT*WDWAAN
Trigger: GTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCG...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGGACGCTGTTGGTGTTTaGTGTGGGCTGGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRDAVGV*CGLGSR
Trigger: CCTGCTGCCCAGCCCACAGCAAACACCAACAGCGTC...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGCCAACATGCTGGGACTaGGCAGCCAACCTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRPTCWD*AANLWS
Trigger: GCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGG...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCCCTCGCCGTCTGGGCTaGGGGAATCCATCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATPRRLG*GNPSLC
Trigger: ACACAGAGATGGATTCCCCCAGCCCAGACGGCGAGG...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGGGTCTATGGGGAATGTaGAGTACCACATGGGACTGT +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQGLWGM*STTWDC
Trigger: ACAGTCCCATGTGGTACTCCACATTCCCCATAGACC...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTCTAGTAGTCCCTGCTaGGGCGCCACTGCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRSSSPC*GATALS
Trigger: TGACAGAGCAGTGGCGCCTCAGCAGGGACTACTAGA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGGCATTCCATAAGACATaGTGGCAAGGGTGGGAGTTA +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQAFHKT*WQGWEL
Trigger: TAACTCCCACCCTTGCCAGCATGTCTTATGGAATGC...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAGGTGAGGGGAGGCGGTaGGCGGGCAGGTGGAACTGT +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGGEGRR*AGRWNC
Trigger: ACAGTTCCACCTGCCCGCCCACCGCCTCCCCTCACC...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTGTTGGTGTTTGCTGTaGGCTGGGCAGCAGGAGCAC +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATCWCLL*AGQQEH
Trigger: GTGCTCCTGCTGCCCAGCCCACAGCAAACACCAACA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCATGTTGGTGTTTGCTGTaGGCTGGGCAGCAGGAGCAC +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPCWCLL*AGQQEH
Trigger: GTGCTCCTGCTGCCCAGCCCACAGCAAACACCAACA...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGGTTCTTCAAAAGCCTTaGAGGTTGGGAAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQVLQKP*RLGRWK
Trigger: CTTCCACCTTCCCAACCTCCAAGGCTTTTGAAGAAC...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGTACTTCAGAGTCCTaGTCCGGCGCATCACGTGGG +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRCTSES*SGASRG
Trigger: CCCACGTGATGCGCCGGACCAGGACTCTGAAGTACA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGTTTATTCATGCCAGGTaGTGCCAGAGAAGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQFIHAR*CQRRLK
Trigger: TTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAA...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTGTCATTCCAGACACTaGGCACCCTTGCAAGGCTCC +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRCHSRH*APLQGS
Trigger: GGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAGTACCTCCCTCACCATaGGAATGCGCGTCAACATGG +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPVPPSP*ECASTW
Trigger: CCATGTTGACGCGCATTCTCATGGTGAGGGAGGTAC...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGGTAGTCAAGAAGCTCTaGCTTTGTGGCAAAAAGACG +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQVVKKL*LCGKKT
Trigger: CGTCTTTTTGCCACAAAGCCAGAGCTTCTTGACTAC...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGAACAAGTCTTCTTGGTaGGGGGAGGCGGTGGGCGGG +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGNKSSW*GEAVGG
Trigger: CCCGCCCACCGCCTCCCCTCACCAAGAAGACTTGTT...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGGAGAGGGCATGGTCTTaGGCACTTCCTAAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRERAWS*ALPKES
Trigger: TGACTCCTTAGGAAGTGCTCAAGACCATGCCCTCTC...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTGAGAGGGCATGGTCTTaGGCACTTCCTAAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASERAWS*ALPKES
Trigger: TGACTCCTTAGGAAGTGCTCAAGACCATGCCCTCTC...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAGACTGCCCCTCAATTTaGAGCACATGGCACTGTCCA +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPDCPSI*STWHCP
Trigger: TGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTC...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTGACTGCCCCTCAATTTaGAGCACATGGCACTGTCCA +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASDCPSI*STWHCP
Trigger: TGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTC...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGAAGCGCCCAGCTGTTTaGACTCCCACAGATGCTCTT +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRKRPAV*TPTDAL
Trigger: AAGAGCATCTGTGGGAGTGCAAACAGCTGGGCGCTT...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTGGTGAGGGGAGGCGGTaGGCGGGCAGGTGGAACTGT +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGGEGRR*AGRWNC
Trigger: ACAGTTCCACCTGCCCGCCCACCGCCTCCCCTCACC...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTCTTGTAAGACGCTGTTaGTGTTTGCTGTGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASLVRRC*CLLWAG
Trigger: CCCAGCCCACAGCAAACACCAACAGCGTCTTACAAG...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCAACCTGGGGCTCACTTaGAGTGTCTGTCTGGCATTC +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATNLGLT*SVCLAF
Trigger: GAATGCCAGACAGACACTCCAAGTGAGCCCCAGGTT...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
3UTR CAA 72 bp TCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTaGCAGTCCACTACGGCTCAGAGCCACCGTTTTTCC +
Preference number: 4 (lower is better)
Translates to: SQSTHPSPLRLH*QSTTAQSHRFS
Trigger: GGAAAAACGGTGGCTCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGTTCATTTTCATTGTCTaGTTCCTGATGAGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQFIFIV*FLMSSS
Trigger: AGAGCTGCTCATCAGGAATCAGACAATGAAAATGAA...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCATTTACAGCCTTGCTCTaGGGATTCTTGAGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPFTALL*GFLREG
Trigger: GCCCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAA...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGATGAACCTGTGGGGATaGTCACGATTACCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMMNLWG*SRLPGP
Trigger: AGGGCCAGGTAATCGTGAGCATCCCCACAGGTTCAT...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTCTTGTTCGAGAACGTaGCTGGATCCCCTGTCCTTT +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATSCSRT*LDPLSF
Trigger: AAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAGGTACGTCATCTTGGTaGTGTACTTCAGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPGTSSW*CTSESW
Trigger: CCAGGACTCTGAAGTACAGCACCAAGATGACGTACC...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTGGTACGTCATCTTGGTaGTGTACTTCAGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASGTSSW*CTSESW
Trigger: CCAGGACTCTGAAGTACAGCACCAAGATGACGTACC...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTTGGGCAGCCAACCTCTaGAGCCCAGCAGCAGCGGAG +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGWAANL*SPAAAE
Trigger: CTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGCCCA...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACCAACATGCTGGGACTaGGCAGCCAACCTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGPTCWD*AANLWS
Trigger: GCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTTGTTTAACAGGACAATaGGCGAGTAAGCGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASCLTGQ*ASKRPA
Trigger: AGCTGGGCGCTTACTCGCCCATTGTCCTGTTAAACA...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAGGTCTATGGGGAATGTaGAGTACCACATGGGACTGT +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPGLWGM*STTWDC
Trigger: ACAGTCCCATGTGGTACTCCACATTCCCCATAGACC...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGCCTGCAGAAGCAGCTTaGACCATGGAAATACTTGCT +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRPAEAA*TMEILA
Trigger: AGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGG...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGAGCAATGACTGGAGTTaGATCTTTTCTGAGGGACGG +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRSNDWS*IFSEGR
Trigger: CCGTCCCTCAGAAAAGATTCAACTCCAGTCATTGCT...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTTTCAGGGCATCTGTTTaGGTACTTGCATCCCCAATG +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASFRASV*VLASPM
Trigger: CATTGGGGATGCAAGTACTCAAACAGATGCCCTGAA...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTTCAGGGCATCTGTTTaGGTACTTGCATCCCCAATG +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRFRASV*VLASPM
Trigger: CATTGGGGATGCAAGTACTCAAACAGATGCCCTGAA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGTCTGAATCAGCATCTTaGACAGCATTCGACTTTAAT +
Preference number: 4 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQSESAS*TAFDFN
Trigger: ATTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGA...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAAAAAGCCTTGGAGGTTaGGAAGGTGGAAGTTTCAGG +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPKSLGG*EGGSFR
Trigger: CCTGAAACTTCCACCTTCCCAACCTCCAAGGCTTTT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCAAAAGCCTTGGAGGTTaGGAAGGTGGAAGTTTCAGG +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATKSLGG*EGGSFR
Trigger: CCTGAAACTTCCACCTTCCCAACCTCCAAGGCTTTT...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGGTTCGAGAACGTGCCTaGATCCCCTGTCCTTTATTA +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRVRERA*IPCPLL
Trigger: TAATAAAGGACAGGGGATCCAGGCACGTTCTCGAAC...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTGTTTAACAGGACAATaGGCGAGTAAGCGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMCLTGQ*ASKRPA
Trigger: AGCTGGGCGCTTACTCGCCCATTGTCCTGTTAAACA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGAGACAAGGGCACTACTaGAGAATTCATTCCAGTTGG +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRRQGHY*RIHSSW
Trigger: CCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCT...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTAGACAAGGGCACTACTaGAGAATTCATTCCAGTTGG +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASRQGHY*RIHSSW
Trigger: CCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTACCTCGCCATTTCAATaGTTCACTGAGTTTACCCTG +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASTSPFQ*FTEFTL
Trigger: CAGGGTAAACTCAGTGAATCATTGAAATGGCGAGGT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGCCTGCAGAAGCAGCTTaGACCATGGAAATACTTGCT +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMPAEAA*TMEILA
Trigger: AGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGG...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGTACCTCCCTCACCATaGGAATGCGCGTCAACATGG +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGVPPSP*ECASTW
Trigger: CCATGTTGACGCGCATTCTCATGGTGAGGGAGGTAC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCAACGACTGGAATTCCTaGAAGATCCCCAGAGTTCAA +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATNDWNS*KIPRVQ
Trigger: TTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTT...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR GCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTCTGCTGAGGCGCCACTaGTCTGTCATACTCATCATC +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSLLRRH*SVILII
Trigger: GATGATGAGTATGACAGAGCAGTGGCGCCTCAGCAG...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTGTTGTCAGTGTTCTCTaGCATCTCCACTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSVVSVL*HLHSHW
Trigger: CCAGTGGGAGTGGAGATGGCAGAGAACACTGACAAC...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAATGACAGCGTTCTTCTaGCACATGCTGCATTTGGTT +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPMTAFF*HMLHLV
Trigger: AACCAAATGCAGCATGTGCCAGAAGAACGCTGTCAT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTATGACAGCGTTCTTCTaGCACATGCTGCATTTGGTT +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASMTAFF*HMLHLV
Trigger: AACCAAATGCAGCATGTGCCAGAAGAACGCTGTCAT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAGTAGTCAAGAAGCTCTaGCTTTGTGGCAAAAAGACG +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPVVKKL*LCGKKT
Trigger: CGTCTTTTTGCCACAAAGCCAGAGCTTCTTGACTAC...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTCCTCGCCGTCTGGGCTaGGGGAATCCATCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGPRRLG*GNPSLC
Trigger: ACACAGAGATGGATTCCCCCAGCCCAGACGGCGAGG...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGCTCCTTGTTCATCCTTaGCATTTTTCCACTGAACCC +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRLLVHP*HFSTEP
Trigger: GGGTTCAGTGGAAAAATGCCAAGGATGAACAAGGAG...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTGGTCTCCGCACCTCTTaGATAAACTGGCATAAGCCC +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSGLRTS*INWHKP
Trigger: GGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACC...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAACTGCTTTTCAACCTTaGATCCAAACCTTTATGGGG +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPTAFQP*IQTFMG
Trigger: CCCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGAGGACTGCCACTGACTaGAAACACAGCACTAATTTT +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRRTATD*KHSTNF
Trigger: AAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCT...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTTTACAACTGTTACACTaGACTTGTACACCTGCGGAA +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASLQLLH*TCTPAE
Trigger: TTCCGCAGGTGTACAAGTTCAGTGTAACAGTTGTAA...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAAGTATGTGGTTTACATaGCGTGGCTTTAGTCTGTGT +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPSMWFT*RGFSLC
Trigger: ACACAGACTAAAGCCACGTCATGTAAACCACATACT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTTTTACAGCCTTGCTCTaGGGATTCTTGAGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSFTALL*GFLREG
Trigger: GCCCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAA...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTCAAATAGGTACTGCTaGATTCCAAGGCACAGGTAT +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATSNRYC*IPRHRY
Trigger: ATACCTGTGCCTTGGAATTCAGCAGTACCTATTTGA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACTGCTGAGGCGCCACTaGTCTGTCATACTCATCATC +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGLLRRH*SVILII
Trigger: GATGATGAGTATGACAGAGCAGTGGCGCCTCAGCAG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCAAAAACAGGCATCACTaGAGAGCTTATGAACCACGT +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATKNRHH*RAYEPR
Trigger: ACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTT...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTCAAAACTTCTTAGACTaGCCCTCAATTTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASQNFLD*PSICST
Trigger: TGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTG...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTGTAGCTGCAGAAGTTaGGTATACTTCCATCTGACA +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRCSCRS*VYFHLT
Trigger: TGTCAGATGGAAGTATACGCAACTTCTGCAGCTACA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTTCTGCAATCATTTCTaGCATCTCAAGGAGATCTGC +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATFCNHF*HLKEIC
Trigger: GCAGATCTCCTTGAGATGGCAGAAATGATTGCAGAA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGGATGCTCTTCTTCAATaGGGGAGAACATGTAACCAT +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRDALLQ*GRTCNH
Trigger: ATGGTTACATGTTCTCCCGCATTGAAGAAGAGCATC...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGGATGCTCTTCTTCAATaGGGGAGAACATGTAACCAT +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRDALLQ*GRTCNH
Trigger: ATGGTTACATGTTCTCCCGCATTGAAGAAGAGCATC...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTTCTTTACTGGCAAATaGGTAGCTGGAGTCCCTAAA +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATFFTGK*VAGVPK
Trigger: TTTAGGGACTCCAGCTACCCATTTGCCAGTAAAGAA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCACGGTGGGCGGGCAGGTaGAACTGTGTATCCCGTGAG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPRWAGR*NCVSRE
Trigger: CTCACGGGATACACAGTTCCACCTGCCCGCCCACCG...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGGTACCACCATAACCTaGGGCTCACTTGGAGTGTCT +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGGTTIT*GSLGVS
Trigger: AGACACTCCAAGTGAGCCCCAGGTTATGGTGGTACC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAACCTCTTGGATAAACTaGCATAAGCCCAAACTCAAC +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPTSWIN*HKPKLN
Trigger: GTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAGGGTTCCAGGGTCTATaGGGAATGTGGAGTACCACA +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGGFQGL*GMWSTT
Trigger: TGTGGTACTCCACATTCCCCATAGACCCTGGAACCC...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAAAACTACCATCAGTGTaGACTGAAGAAACAAGGTTG +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPKLPSV*TEETRL
Trigger: CAACCTTGTTTCTTCAGTTCACACTGATGGTAGTTT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTCTGCTTGTATGAGGTaGCACACATTGAACTACAAA +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRSACMR*HTLNYK
Trigger: TTTGTAGTTCAATGTGTGTCACCTCATACAAGCAGA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGATTTCAATGATTCACTaGGTTTACCCTGTCTCTTGC +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRISMIH*VYPVSC
Trigger: GCAAGAGACAGGGTAAACTCAGTGAATCATTGAAAT...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGAGTATGTGGTTTACATaGCGTGGCTTTAGTCTGTGT +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMSMWFT*RGFSLC
Trigger: ACACAGACTAAAGCCACGTCATGTAAACCACATACT...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTCTTGTTCAGAAGTTTaGGATTCTCCCTGGGATAAA +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRSCSEV*DSPWDK
Trigger: TTTATCCCAGGGAGAATCTCAAACTTCTGAACAAGA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATGGGTCAAAAGATTCTaGTGGGAAGTCTGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGWVKRF*WEVCLQ
Trigger: CTGGAGGCAGACTTCCCATCAGAATCTTTTGACCCA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTTTGGCATTTTTCCACTaGACCCAGTTCTTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSLAFFH*TQFFQA
Trigger: TGCCTGGAAGAACTGGGTTCAGTGGAAAAATGCCAA...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGCAAAACTTCTTAGACTaGCCCTCAATTTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMQNFLD*PSICST
Trigger: TGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTG...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCATTTTGGCTGATTTCTaGTTGTATGAGGTGACACAC +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATILADF*LYEVTH
Trigger: GTGTGTCACCTCATACAAGCAGAAATCAGCCAAAAT...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR GCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCCGGGCAAACCCAACATaGTGGGACTGGGCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSRANPT*WDWAAN
Trigger: GTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCG...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGACGCTGTTGGTGTTTaGTGTGGGCTGGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPDAVGV*CGLGSR
Trigger: CCTGCTGCCCAGCCCACAGCAAACACCAACAGCGTC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTTCTGCAATCATTTCTaGCATCTCAAGGAGATCTGC +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMFCNHF*HLKEIC
Trigger: GCAGATCTCCTTGAGATGGCAGAAATGATTGCAGAA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTGTCACTACTAACGACTaGAATTCCTGCAAGATCCCC +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSVTTND*NSCKIP
Trigger: GGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGAC...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATATGGGAACAAACACTaGCACAGGGACTGGTACCAC +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGYGNKH*HRDWYH
Trigger: GTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGTATGGGAACAAACACTaGCACAGGGACTGGTACCAC +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGYGNKH*HRDWYH
Trigger: GTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATA...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTTCAGGTACGTCATCTTaGTGCTGTACTTCAGAGTCC +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSSGTSS*CCTSES
Trigger: GGACTCTGAAGTACAGCACCAAGATGACGTACCTGA...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTGAATGCGCGTCAACATaGTGTCCAGGGTTCCAGGGT +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGECAST*CPGFQG
Trigger: ACCCTGGAACCCTGGACACCATGTTGACGCGCATTC...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGCTTCAGATTTGGCTTTaGCAAGTTCTTCATGTACCT +
Preference number: 4 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRLQIWL*QVLHVP
Trigger: AGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAG...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTATCTTCATCCAGCAATaGATTTTCAGATCCTGTTTG +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASIFIQQ*IFRSCL
Trigger: CAAACAGGATCTGAAAATTCATTGCTGGATGAAGAT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCTCTAGTAGTCCCTGCTaGGGCGCCACTGCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSSSSPC*GATALS
Trigger: TGACAGAGCAGTGGCGCCTCAGCAGGGACTACTAGA...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTCTGCTTGTATGAGGTaGCACACATTGAACTACAAA +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMSACMR*HTLNYK
Trigger: TTTGTAGTTCAATGTGTGTCACCTCATACAAGCAGA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCATGGCATTCTTTGTTTTaGGTATGTGGTTTACATGAC +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPWHSLF*VCGLHD
Trigger: GTCATGTAAACCACATACTCAAAACAAAGAATGCCA...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTCTTGTTCAGAAGTTTaGGATTCTCCCTGGGATAAA +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMSCSEV*DSPWDK
Trigger: TTTATCCCAGGGAGAATCTCAAACTTCTGAACAAGA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTCCACACAACTGTAGCTaGAGAAGTTGCGTATACTTC +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSPHNCS*RSCVYF
Trigger: GAAGTATACGCAACTTCTGCAGCTACAGTTGTGTGG...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR GCA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTTTCAATGCCCTCAGTTaGTTTCTCATCATTATCCAT +
Preference number: 4 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASFNALS*FLIIIH
Trigger: ATGGATAATGATGAGAAAGCAACTGAGGGCATTGAA...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTTCAATGCCCTCAGTTaGTTTCTCATCATTATCCAT +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRFNALS*FLIIIH
Trigger: ATGGATAATGATGAGAAAGCAACTGAGGGCATTGAA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACATCTCAAGGAGATCTaGTTCAAACGGATGTGTGGC +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGHLKEI*FKRMCG
Trigger: GCCACACATCCGTTTGAAGCAGATCTCCTTGAGATG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATCTGCCTCCAGATCCTaGTCTGTTTCCCCTTTTGAA +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGSASRS*SVSPFE
Trigger: TTCAAAAGGGGAAACAGAGCAGGATCTGGAGGCAGA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCATCAACTCAGAAAAAGTaGAGGACAGAATATCTTCCT +
Preference number: 4 (lower is better)
Translates to: EMRETPGNVTHTCALRFPSTQKK*RTEYLP
Trigger: AGGAAGATATTCTGTCCTGCACTTTTTCTGAGTTGA...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTGTTGTCAGTGTTCTCTaGCATCTCCACTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGVVSVL*HLHSHW
Trigger: CCAGTGGGAGTGGAGATGGCAGAGAACACTGACAAC...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGGTACTATTTTCAAACTaGGCACTGATCACATCCTTT +
Preference number: 4 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRVLFSN*ALITSF
Trigger: AAAGGATGTGATCAGTGCCCAGTTTGAAAATAGTAC...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCTGTACTTCAGAGTCCTaGTCCGGCGCATCACGTGGG +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSCTSES*SGASRG
Trigger: CCCACGTGATGCGCCGGACCAGGACTCTGAAGTACA...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTAGGACTGCCACTGACTaGAAACACAGCACTAATTTT +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSRTATD*KHSTNF
Trigger: AAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCT...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGACCTCGCCATTTCAATaGTTCACTGAGTTTACCCTG +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGTSPFQ*FTEFTL
Trigger: CAGGGTAAACTCAGTGAATCATTGAAATGGCGAGGT...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCATGTCATTCCAGACACTaGGCACCCTTGCAAGGCTCC +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPCHSRH*APLQGS
Trigger: GGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACA...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTTCTTGTTCGAGAACGTaGCTGGATCCCCTGTCCTTT +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGSCSRT*LDPLSF
Trigger: AAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGA...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTACATGCTGGCAAGGGTaGGAGTTAAGTTGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGTCWQG*ELSCGL
Trigger: CAGACCACAACTTAACTCCCACCCTTGCCAGCATGT...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATTCCATAAGACATGCTaGCAAGGGTGGGAGTTAAGT +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGFHKTC*QGWELS
Trigger: ACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTTGTTAAACAAATTCTaGAAAGCTACCACACAACTG +
Preference number: 4 (lower is better)
Translates to: WTACSSSLLQPGSHCKATLLNKF*KATTQL
Trigger: CAGTTGTGTGGTAGCTTTCCAGAATTTGTTTAACAA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTAAAGATGAAGAGGTATaGGAACAAACACTGGCACAG +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSKDEEV*EQTLAQ
Trigger: CTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTT...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACTCCTTGTTCATCCTTaGCATTTTTCCACTGAACCC +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGLLVHP*HFSTEP
Trigger: GGGTTCAGTGGAAAAATGCCAAGGATGAACAAGGAG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGAATGCGCGTCAACATaGTGTCCAGGGTTCCAGGGT +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPECAST*CPGFQG
Trigger: ACCCTGGAACCCTGGACACCATGTTGACGCGCATTC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTTTGGCATTTTTCCACTaGACCCAGTTCTTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGLAFFH*TQFFQA
Trigger: TGCCTGGAAGAACTGGGTTCAGTGGAAAAATGCCAA...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATCAAATAGGTACTGCTaGATTCCAAGGCACAGGTAT +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGSNRYC*IPRHRY
Trigger: ATACCTGTGCCTTGGAATTCAGCAGTACCTATTTGA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAAAAAACAGGCATCACTaGAGAGCTTATGAACCACGT +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGKNRHH*RAYEPR
Trigger: ACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTT...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTAAGGACAGCTTCAAGTaGTCAGTAACATTCCTTAGT +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSKDSFK*SVTFLS
Trigger: ACTAAGGAATGTTACTGAGCACTTGAAGCTGTCCTT...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGAAAAATCCTTACTGGTaGTACTATTTTCAAACTGGG +
Preference number: 4 (lower is better)
Translates to: PIDLCELESGIQQQKGRMKNPYW*YYFQTG
Trigger: CCCAGTTTGAAAATAGTACCACCAGTAAGGATTTTT...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCACTTGTAAGACGCTGTTaGTGTTTGCTGTGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPLVRRC*CLLWAG
Trigger: CCCAGCCCACAGCAAACACCAACAGCGTCTTACAAG...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCAACCTGGGGCTCACTTaGAGTGTCTGTCTGGCATTC +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSNLGLT*SVCLAF
Trigger: GAATGCCAGACAGACACTCCAAGTGAGCCCCAGGTT...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTGTTCGAGAACGTGCCTaGATCCCCTGTCCTTTATTA +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGVRERA*IPCPLL
Trigger: TAATAAAGGACAGGGGATCCAGGCACGTTCTCGAAC...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGGTCTCCGCACCTCTTaGATAAACTGGCATAAGCCC +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPGLRTS*INWHKP
Trigger: GGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGGGTTCCAGGGTCTATaGGGAATGTGGAGTACCACA +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPGFQGL*GMWSTT
Trigger: TGTGGTACTCCACATTCCCCATAGACCCTGGAACCC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTACATTTCTGTATCCATaGCACCACAGTTTTCTACAA +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSTFLYP*HHSFLQ
Trigger: TTGTAGAAAACTGTGGTGTCATGGATACAGAAATGT...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAACAAGCATGATTGACTaGAAAAATCCTTACTGGTGG +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGTSMID*KNPYWW
Trigger: CCACCAGTAAGGATTTTTGCAGTCAATCATGCTTGT...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGAAGGACAGCTTCAAGTaGTCAGTAACATTCCTTAGT +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGKDSFK*SVTFLS
Trigger: ACTAAGGAATGTTACTGAGCACTTGAAGCTGTCCTT...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGTGGGAGTTAAGTTGTaGTCTGTATCTTCAGACATT +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGVGVKL*SVSSDI
Trigger: AATGTCTGAAGATACAGACCACAACTTAACTCCCAC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTGTACTATTTTCAAACTaGGCACTGATCACATCCTTT +
Preference number: 4 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSVLFSN*ALITSF
Trigger: AAAGGATGTGATCAGTGCCCAGTTTGAAAATAGTAC...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGCTTCAGATTTGGCTTTaGCAAGTTCTTCATGTACCT +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGLQIWL*QVLHVP
Trigger: AGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAG...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACAGAGTCTTCAGATTTaGCTTTGGCAAGTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGQSLQI*LWQVLH
Trigger: ATGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTACCATCAGTGTGAACTaGAGAAACAAGGTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGTISVN*RNKVVL
Trigger: AAGGACAACCTTGTTTCTTCAGTTCACACTGATGGT...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAAGCAATGACTGGAGTTaGATCTTTTCTGAGGGACGG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPSNDWS*IFSEGR
Trigger: CCGTCCCTCAGAAAAGATTCAACTCCAGTCATTGCT...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATCAACTCAGAAAAAGTaGAGGACAGAATATCTTCCT +
Preference number: 4 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGSTQKK*RTEYLP
Trigger: AGGAAGATATTCTGTCCTGCACTTTTTCTGAGTTGA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGAATCCAAACCTTTATaGGGTTTATCCAACCGTTTT +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGESKPL*GLSNRF
Trigger: AAAACGGTTGGATAAACCCCATAAAGGTTTGGATTC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTCAATGGATTCTTTACTaGCAAATGGGTAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGQWILY*QMGSWS
Trigger: ACTCCAGCTACCCATTTGCCAGTAAAGAATCCATTG...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTCCAGTTCCGAACCAATaGATTCTTTACTGGCAAATG +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGPVPNQ*ILYWQM
Trigger: CATTTGCCAGTAAAGAATCCATTGGTTCGGAACTGG...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGCACATGGTGTTATTTTaGCTGATTTCTGCTTGTATG +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGHMVLF*LISACM
Trigger: CATACAAGCAGAAATCAGCCAAAATAACACCATGTG...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGTTCTTCAAAAGCCTTaGAGGTTGGGAAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPVLQKP*RLGRWK
Trigger: CTTCCACCTTCCCAACCTCCAAGGCTTTTGAAGAAC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTAAAGATGAAGAGGTATaGGAACAAACACTGGCACAG +
Preference number: 4 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGKDEEV*EQTLAQ
Trigger: CTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTT...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGATTATCCATAGAGGATaGAATAAACATGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGIIHRG*NKHGNR
Trigger: CCTGTTCCCATGTTTATTCCATCCTCTATGGATAAT...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCATCAGGTACGTCATCTTaGTGCTGTACTTCAGAGTCC +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPSGTSS*CCTSES
Trigger: GGACTCTGAAGTACAGCACCAAGATGACGTACCTGA...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR GCA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGTTGTTAAACAAATTCTaGTTGTATGAGGTGACACAC +
Preference number: 4 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGLLNKF*LYEVTH
Trigger: GTGTGTCACCTCATACAAGCAGAATTTGTTTAACAA...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCACCTCTTGGATAAACTaGCATAAGCCCAAACTCAAC +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSTSWIN*HKPKLN
Trigger: GTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGT...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCAACAAGGTTGTCCTTTaGACTACAATCCTGTTCATC +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSNKVVL*TTILFI
Trigger: GATGAACAGGATTGTAGTTCAAAGGACAACCTTGTT...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR TCA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCATTTCAATGATTCACTaGGTTTACCCTGTCTCTTGC +
Preference number: 4 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSISMIH*VYPVSC
Trigger: GCAAGAGACAGGGTAAACTCAGTGAATCATTGAAAT...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR TCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCATGGCATTCTTTGTTTTaGGTATGTGGTTTACATGAC +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPWHSLF*VCGLHD
Trigger: GTCATGTAAACCACATACTCAAAACAAAGAATGCCA...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAATTATCCATAGAGGATaGAATAAACATGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPIIHRG*NKHGNR
Trigger: CCTGTTCCCATGTTTATTCCATCCTCTATGGATAAT...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CCA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAAAAAATCCTTACTGGTaGTACTATTTTCAAACTGGG +
Preference number: 4 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPKNPYW*YYFQTG
Trigger: CCCAGTTTGAAAATAGTACCACCAGTAAGGATTTTT...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
38% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp CACCTAAGCTTCACCACACTTCGGGCAAACCCAACATGCTGGGACTaGGCAGCCAACCTCTGGAGCCCAGCAGCAGCGGAGCTGTTGATC +
Preference number: 5 (lower is better)
Translates to: HLSFTTLRANPTCWD*AANLWSPAAAELLI
Trigger: GATCAACAGCTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCGAAGTGTGGTGAAGCTTAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 90 bp CCGGCTTCTGTAAAGGCGGGAAGAACCTCAGGTACGTCATCTTGGTaGTGTACTTCAGAGTCCTGGTCCGGCGCATCACGTGGGCAAAGG +
Preference number: 5 (lower is better)
Translates to: PASVKAGRTSGTSSW*CTSESWSGASRGQR
Trigger: CCTTTGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGAAGCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp GGTTCCACAGGTACCACAGACTTCTTCCTCCCTCGCCGTCTGGGCTaGGGGAATCCATCTCTGTGTCTTCGTCTTGTTCGAGAACGTGCC +
Preference number: 5 (lower is better)
Translates to: GSTGTTDFFLPRRLG*GNPSLCLRLVRERA
Trigger: GGCACGTTCTCGAACAAGACGAAGACACAGAGATGGATTCCCCCAGCCCAGACGGCGAGGGAGGAAGAAGTCTGTGGTACCTGTGGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCAGACGCTGTTGGTGTTaGCTGTGGGCTGGGCAGCAG +
Preference number: 5 (lower is better)
Translates to: WTACSSSLLQPGSHCKATRRCWC*LWAGQQ
Trigger: CTGCTGCCCAGCCCACAGCAAACACCAACAGCGTCT...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGCTCAGGTACGTCATCTaGGTGCTGTACTTCAGAGTC +
Preference number: 5 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQLRYVI*VLYFRV
Trigger: GACTCTGAAGTACAGCACCAAGATGACGTACCTGAG...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGGGGCACCTCAGCGGGTaGTCAGTGTTCTCTGCCATC +
Preference number: 5 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRGHLSG*SVFSAI
Trigger: GATGGCAGAGAACACTGACAACCCGCTGAGGTGCCC...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 90 bp CTCATAAAGCCGAACCGGGCACCTCAGCGGGTTGTCAGTGTTCTCTaGCATCTCCACTCCCACTGGGGCCTCGTCGTCTTCATTTCGTTT +
Preference number: 5 (lower is better)
Translates to: LIKPNRAPQRVVSVL*HLHSHWGLVVFISF
Trigger: AAACGAAATGAAGACGACGAGGCCCCAGTGGGAGTGGAGATGGCAGAGAACACTGACAACCCGCTGAGGTGCCCGGTTCGGCTTTATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp ACTCCGGCTTCTGTAAAGGCGGGAAGAACCTCAGGTACGTCATCTTaGTGCTGTACTTCAGAGTCCTGGTCCGGCGCATCACGTGGGCAA +
Preference number: 5 (lower is better)
Translates to: TPASVKAGRTSGTSS*CCTSESWSGASRGQ
Trigger: TTGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGAAGCCGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGAGACGCTGTTGGTGTTaGCTGTGGGCTGGGCAGCAG +
Preference number: 5 (lower is better)
Translates to: PIDLCELESGIQQQKGRMRRCWC*LWAGQQ
Trigger: CTGCTGCCCAGCCCACAGCAAACACCAACAGCGTCT...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp TTCTGGGTTCCACAGGTACCACAGACTTCTTCCTCCCTCGCCGTCTaGGCTGGGGGAATCCATCTCTGTGTCTTCGTCTTGTTCGAGAAC +
Preference number: 5 (lower is better)
Translates to: FWVPQVPQTSSSLAV*AGGIHLCVFVLFEN
Trigger: GTTCTCGAACAAGACGAAGACACAGAGATGGATTCCCCCAGCCCAGACGGCGAGGGAGGAAGAAGTCTGTGGTACCTGTGGAACCCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp GGAAGAACCTCAGGTACGTCATCTTGGTGCTGTACTTCAGAGTCCTaGTCCGGCGCATCACGTGGGCAAAGGACAGCTTCAAGTGCTCAG +
Preference number: 5 (lower is better)
Translates to: GRTSGTSSWCCTSES*SGASRGQRTASSAQ
Trigger: CTGAGCACTTGAAGCTGTCCTTTGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CTGGACACAAAGGGAGGCCCCACTTCTGTGCAGCCAGCTGAGGCCAGGAGACAGCCCCTCTTGAGTTTTTaGCTGTTGGCCATGACTATA +
Preference number: 5 (lower is better)
Translates to: LDTKGGPTSVQPAEARRQPLLSF*LLAMTI
Trigger: TATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGG...CTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTCCCAGCTGTGTGGAGTaGATACTGCTTCTGACTCAA +
Preference number: 5 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASPSCVE*ILLLTQ
Trigger: TTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGG...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAGGGCACCTCAGCGGGTaGTCAGTGTTCTCTGCCATC +
Preference number: 5 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGGHLSG*SVFSAI
Trigger: GATGGCAGAGAACACTGACAACCCGCTGAGGTGCCC...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp GGTGTAAAGATGAAGAGGTATGGGAACAAACACTGGCACAGGGACTaGTACCACCATAACCTGGGGCTCACTTGGAGTGTCTGTCTGGCA +
Preference number: 5 (lower is better)
Translates to: GVKMKRYGNKHWHRD*YHHNLGLTWSVCLA
Trigger: TGCCAGACAGACACTCCAAGTGAGCCCCAGGTTATGGTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCAAGGGTGGGAGTTAAGTaGTGGTCTGTATCTTCAGAC +
Preference number: 5 (lower is better)
Translates to: EMRETPGNVTHTCALRFPRVGVK*WSVSSD
Trigger: GTCTGAAGATACAGACCACAACTTAACTCCCACCCT...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGGCCATGACTATACTCTaGAGCATTGTCAGGTTCGTC +
Preference number: 5 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRAMTIL*SIVRFV
Trigger: GACGAACCTGACAATGCTCAAGAGTATAGTCATGGC...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTAGACTGCCCCTCAATTaGCAGCACATGGCACTGTCC +
Preference number: 5 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSRLPLN*QHMALS
Trigger: GGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCT...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGCATACTTTTCACCATTaGGTCTCCGCACCTCTTGGA +
Preference number: 5 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRHTFHH*VSAPLG
Trigger: TCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATG...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCACATACTTTTCACCATTaGGTCTCCGCACCTCTTGGA +
Preference number: 5 (lower is better)
Translates to: EMRETPGNVTHTCALRFPHTFHH*VSAPLG
Trigger: TCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATG...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 90 bp CTTCAGATTTGGCTTTGGCAAGTTCTTCATGTACCTCCCTCACCATaGGAATGCGCGTCAACATGGTGTCCAGGGTTCCAGGGTCTATGG +
Preference number: 5 (lower is better)
Translates to: LQIWLWQVLHVPPSP*ECASTWCPGFQGLW
Trigger: CCATAGACCCTGGAACCCTGGACACCATGTTGACGCGCATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTCACTACAAAATGACTaGTCAGCACCTGAGAACCTC +
Preference number: 5 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRSLQND*SAPENL
Trigger: GAGGTTCTCAGGTGCTGACAAGTCATTTTGTAGTGA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TGGACAGCTTGCTCAAGTAGCCTACTGCAGCCAGGGTCTCACTGCAAAGCTACCTTTCAGGGCATCTGTTaGAGTACTTGCATCCCCAAT +
Preference number: 5 (lower is better)
Translates to: WTACSSSLLQPGSHCKATFQGIC*STCIPN
Trigger: ATTGGGGATGCAAGTACTCAAACAGATGCCCTGAAA...GGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGTGTTCTTCAAAAGCCTaGGAGGTTGGGAAGGTGGAA +
Preference number: 5 (lower is better)
Translates to: PIDLCELESGIQQQKGRMCSSKA*EVGKVE
Trigger: TTCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACA...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp AGGAGTATACTGGGTGTAAAGATGAAGAGGTATGGGAACAAACACTaGCACAGGGACTGGTACCACCATAACCTGGGGCTCACTTGGAGT +
Preference number: 5 (lower is better)
Translates to: RSILGVKMKRYGNKH*HRDWYHHNLGLTWS
Trigger: ACTCCAAGTGAGCCCCAGGTTATGGTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACCCAGTATACTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGGGTCACATACAGTTaGCTGATGACAGAACATCAA +
Preference number: 5 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRWVTYS*LMTEHQ
Trigger: TTGATGTTCTGTCATCAGCAAACTGTATGTGACCCA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GAGATGAGGGAGACACCTGGTAATGTCACACACACCTGTGCCTTGCGCTTCCCACTTCAATGCCCTCAGTaGCTTTCTCATCATTATCCA +
Preference number: 5 (lower is better)
Translates to: EMRETPGNVTHTCALRFPLQCPQ*LSHHYP
Trigger: TGGATAATGATGAGAAAGCAACTGAGGGCATTGAAG...TGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACTCTGTGTCTTCGTCTaGTTCGAGAACGTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGLCVFV*FENVPG
Trigger: TCCAGGCACGTTCTCGAACAAGACGAAGACACAGAG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTGCACTTCAGATCTCCTaGTTCATCCTTGGCATTTTT +
Preference number: 5 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASALQIS*FILGIF
Trigger: AAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGC...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGTCAGAGTCTTCAGATTaGGCTTTGGCAAGTTCTTCA +
Preference number: 5 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRSESSD*ALASSS
Trigger: TGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGA...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 90 bp TACTTCAGTGTCATTCCAGACACTGAGCACCCTTGCAAGGCTCCTTaGATAAGACTTCTGGGTTCCACAGGTACCACAGACTTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: YFSVIPDTEHPCKAP*IRLLGSTGTTDFFL
Trigger: GAGGAAGAAGTCTGTGGTACCTGTGGAACCCAGAAGTCTTATTCAAGGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACACTGAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGGCACATGGTGTTATTTaGGCTGATTTCTGCTTGTAT +
Preference number: 5 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRAHGVI*ADFCLY
Trigger: ATACAAGCAGAAATCAGCCAAAATAACACCATGTGC...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGATACTTGCTACTGCATaGTTTTGTAAAGGTGGGTCA +
Preference number: 5 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRILATA*FCKGGS
Trigger: TGACCCACCTTTACAAAACAATGCAGTAGCAAGTAT...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTGCTAGTATACTTGCTACTGCATaGTTTTGTAAAGGTGGGTCA +
Preference number: 5 (lower is better)
Translates to: RKSRDRDQGRDRPSSGASILATA*FCKGGS
Trigger: TGACCCACCTTTACAAAACAATGCAGTAGCAAGTAT...ACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGCCCTGCAGAAGCAGCTaGAACCATGGAAATACTTGC +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGPCRSS*NHGNTC
Trigger: GCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGG...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACTCAGGTACGTCATCTaGGTGCTGTACTTCAGAGTC +
Preference number: 5 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGLRYVI*VLYFRV
Trigger: GACTCTGAAGTACAGCACCAAGATGACGTACCTGAG...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 90 bp GGAGTTGAATCTTTTCTGAGGGACGGAGGCCCTGCAGAAGCAGCTTaGACCATGGAAATACTTGCTACTGCATTGTTTTGTAAAGGTGGG +
Preference number: 5 (lower is better)
Translates to: GVESFLRDGGPAEAA*TMEILATALFCKGG
Trigger: CCCACCTTTACAAAACAATGCAGTAGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTCCGTCCCTCAGAAAAGATTCAACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 90 bp CCAGGCATTTACCCCATACATATACTTCAGTGTCATTCCAGACACTaGGCACCCTTGCAAGGCTCCTTGAATAAGACTTCTGGGTTCCAC +
Preference number: 5 (lower is better)
Translates to: PGIYPIHILQCHSRH*APLQGSLNKTSGFH
Trigger: GTGGAACCCAGAAGTCTTATTCAAGGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACACTGAAGTATATGTATGGGGTAAATGCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGATTTTCAGATCCTGTTaGATTCGGCATTCCATAAGA +
Preference number: 5 (lower is better)
Translates to: PPNPLTLLPSGYICSPLRIFRSC*IRHSIR
Trigger: TCTTATGGAATGCCGAATCAAACAGGATCTGAAAAT...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp CCCATAGACCTGTGCGAGCTAGAGTCTGGAATACAGCAGCAGAAAGGTCGCATGACTGAAGAAACAAGGTaGTCCTTTGAACTACAATCC +
Preference number: 5 (lower is better)
Translates to: PIDLCELESGIQQQKGRMTEETR*SFELQS
Trigger: GGATTGTAGTTCAAAGGACAACCTTGTTTCTTCAGT...CATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGAGCCATGACTATACTCTaGAGCATTGTCAGGTTCGTC +
Preference number: 5 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGAMTIL*SIVRFV
Trigger: GACGAACCTGACAATGCTCAAGAGTATAGTCATGGC...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CCTCCCAATCCACTCACCCTTCTCCCCTCAGGTTACATTTGCAGTCCACTACGGGAACCATGGAAATACTaGCTACTGCATTGTTTTGTA +
Preference number: 5 (lower is better)
Translates to: PPNPLTLLPSGYICSPLREPWKY*LLHCFV
Trigger: TACAAAACAATGCAGTAGCAAGTATTTCCATGGTTC...CCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTTTTCAGGGCATCTGTTaGAGTACTTGCATCCCCAAT +
Preference number: 5 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSFQGIC*STCIPN
Trigger: ATTGGGGATGCAAGTACTCAAACAGATGCCCTGAAA...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGTGTTCTTCAAAAGCCTaGGAGGTTGGGAAGGTGGAA +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGCSSKA*EVGKVE
Trigger: TTCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACA...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTGCTCTGTTTCCCCTTTaGAAAACGGTTTCAGTTCTG +
Preference number: 5 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSALFPL*KTVSVL
Trigger: CAGAACTGAAACCGTTTTCAAAAGGGGAAACAGAGC...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp TGCAAAGAGAAAATCCAGAGACAGAGACCAAGGACGGGACAGGCCGAGCTCAGGTCATTTCGTTTCCTCTaGCCAATAGTTACCTTATCT +
Preference number: 5 (lower is better)
Translates to: CKEKIQRQRPRTGQAELRSFRFL*PIVTLS
Trigger: AGATAAGGTAACTATTGGCAAGAGGAAACGAAATGA...CCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGTCCTGTTCATCCTCATaGTCACTACTAACGACTGGA +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGSCSSS*SLLTTG
Trigger: TCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGA...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCAGACTGCCCCTCAATTaGCAGCACATGGCACTGTCC +
Preference number: 5 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSRLPLN*QHMALS
Trigger: GGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCT...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGAGGATCTCAATGATTaGCAAAGCGCACATGGTGTT +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGEDLND*QSAHGV
Trigger: AACACCATGTGCGCTTTGCAAATCATTGAGATCCTC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp TCTTTCGAAGATGTCTATGACCACTCCTCTCCCTCCCAATCCACTCACCCTTCTAACTGCTTTTCAACCTaGAATCCAAACCTTTATGGG +
Preference number: 5 (lower is better)
Translates to: SFEDVYDHSSPSQSTHPSNCFST*NPNLYG
Trigger: CCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGTT...AGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGTGGGTCACATACAGTTaGCTGATGACAGAACATCAA +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGWVTYS*LMTEHQ
Trigger: TTGATGTTCTGTCATCAGCAAACTGTATGTGACCCA...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGCTTCAATGCCCTCAGTaGCTTTCTCATCATTATCCA +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGLQCPQ*LSHHYP
Trigger: TGGATAATGATGAGAAAGCAACTGAGGGCATTGAAG...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCCTCTGTGTCTTCGTCTaGTTCGAGAACGTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSLCVFV*FENVPG
Trigger: TCCAGGCACGTTCTCGAACAAGACGAAGACACAGAG...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp CAGATCCTGTTTGATTCGGCATTCCATAAGACATGCTGGCAAGGGTaGGAGTTAAGTTGTGGTCTGTATCTTCAGACATTTCTGTATCCA +
Preference number: 5 (lower is better)
Translates to: QILFDSAFHKTCWQG*ELSCGLYLQTFLYP
Trigger: TGGATACAGAAATGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 90 bp GTCTTCAATGCCCTCAGTTGCTTTCTCATCATTATCCATAGAGGATaGAATAAACATGGGAACAGGCATAGGAACTGGAATCCCAAAGGG +
Preference number: 5 (lower is better)
Translates to: VFNALSCFLIIIHRG*NKHGNRHRNWNPKG
Trigger: CCCTTTGGGATTCCAGTTCCTATGCCTGTTCCCATGTTTATTCCATCCTCTATGGATAATGATGAGAAAGCAACTGAGGGCATTGAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp GGGTCATACTTTTCACCATTTGGTCTCCGCACCTCTTGGATAAACTaGCATAAGCCCAAACTCAACTCAGAAAAAGTGCAGGACAGAATA +
Preference number: 5 (lower is better)
Translates to: GSYFSPFGLRTSWIN*HKPKLNSEKVQDRI
Trigger: TATTCTGTCCTGCACTTTTTCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATGACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp ATACTGTCTGGGTCATACTTTTCACCATTTGGTCTCCGCACCTCTTaGATAAACTGGCATAAGCCCAAACTCAACTCAGAAAAAGTGCAG +
Preference number: 5 (lower is better)
Translates to: ILSGSYFSPFGLRTS*INWHKPKLNSEKVQ
Trigger: CTGCACTTTTTCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATGACCCAGACAGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTCCCCTCTTGAGTTTTTaGCTGTTGGCCATGACTATA +
Preference number: 5 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGPLLSF*LLAMTI
Trigger: TATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGG...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTACTGTTACACTGAACTaGTACACCTGCGGAAGTAAC +
Preference number: 5 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGTVTLN*YTCGSN
Trigger: GTTACTTCCGCAGGTGTACAAGTTCAGTGTAACAGT...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp AGGAAAGTAAGACAGGGAAGAAAGGATGCCATGGGGAAAACTGGACACAAAGGGGTCTGTGTAATGGGTTaGCACAATAAAGCTTTGTTC +
Preference number: 5 (lower is better)
Translates to: RKVRQGRKDAMGKTGHKGVCVMG*HNKALF
Trigger: GAACAAAGCTTTATTGTGCAAACCCATTACACAGAC...CCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCCCCAGCTGTGTGGAGTaGATACTGCTTCTGACTCAA +
Preference number: 5 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSPSCVE*ILLLTQ
Trigger: TTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGG...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 90 bp GCAATGAATTTTCAGATCCTGTTTGATTCGGCATTCCATAAGACATaGTGGCAAGGGTGGGAGTTAAGTTGTGGTCTGTATCTTCAGACA +
Preference number: 5 (lower is better)
Translates to: AMNFQILFDSAFHKT*WQGWELSCGLYLQT
Trigger: TGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 90 bp ATTATCCATAGAGGATGGAATAAACATGGGAACAGGCATAGGAACTaGAATCCCAAAGGGGACAGGAGTATACTGGGTGTAAAGATGAAG +
Preference number: 5 (lower is better)
Translates to: IIHRGWNKHGNRHRN*NPKGDRSILGVKMK
Trigger: CTTCATCTTTACACCCAGTATACTCCTGTCCCCTTTGGGATTCCAGTTCCTATGCCTGTTCCCATGTTTATTCCATCCTCTATGGATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTTTGGCTGATTTCTGCTaGTATGAGGTGACACACATT +
Preference number: 5 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGLADFC*YEVTHI
Trigger: AATGTGTGTCACCTCATACAAGCAGAAATCAGCCAA...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp GGGAATAGTTCTGTGGTGCCTGCAAAGAGAAAATCCAGAGACAGAGACCAAGGATCATTTCGTTTCCTCTaGCCAATAGTTACCTTATCT +
Preference number: 5 (lower is better)
Translates to: GNSSVVPAKRKSRDRDQGSFRFL*PIVTLS
Trigger: AGATAAGGTAACTATTGGCAAGAGGAAACGAAATGA...TCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp AACAACCAACTTGCTACTCCCACCTATAACATGGGACACACTGAAGTCTTAGGTTCAGAGTCTTCAGATTaGGCTTTGGCAAGTTCTTCA +
Preference number: 5 (lower is better)
Translates to: NNQLATPTYNMGHTEVLGSESSD*ALASSS
Trigger: TGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGA...ACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCATCACTACAAAATGACTaGTCAGCACCTGAGAACCTC +
Preference number: 5 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPSLQND*SAPENL
Trigger: GAGGTTCTCAGGTGCTGACAAGTCATTTTGTAGTGA...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGCTCTGTTTCCCCTTTaGAAAACGGTTTCAGTTCTG +
Preference number: 5 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPALFPL*KTVSVL
Trigger: CAGAACTGAAACCGTTTTCAAAAGGGGAAACAGAGC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 90 bp ATGAATTTTCAGATCCTGTTTGATTCGGCATTCCATAAGACATGCTaGCAAGGGTGGGAGTTAAGTTGTGGTCTGTATCTTCAGACATTT +
Preference number: 5 (lower is better)
Translates to: MNFQILFDSAFHKTC*QGWELSCGLYLQTF
Trigger: AAATGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGCACTTCAGATCTCCTaGTTCATCCTTGGCATTTTT +
Preference number: 5 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPALQIS*FILGIF
Trigger: AAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCGTCTTCCCCAAGCTATaGGTATTCTCAATCATTTCT +
Preference number: 5 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSVFPKL*VFSIIS
Trigger: AGAAATGATTGAGAATACCAATAGCTTGGGGAAGAC...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS-3UTR CAA 90 bp CATTTTAGTGGGCTTTCTATAAATACTTCAAGACACCAGGGTCTAATGAGCTCCGTCTGTGTAATGGGTTaGCACAATAAAGCTTTGTTC +
Preference number: 5 (lower is better)
Translates to: HFSGLSINTSRHQGLMSSVCVMG*HNKALF
Trigger: GAACAAAGCTTTATTGTGCAAACCCATTACACAGAC...GGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS-3UTR CAA 90 bp GTTTTTCCCACCAAACAAGCAAGTCAAGAGGACTTGCATTTCAACATCTTTCCAGAACCATGGAAATACTaGCTACTGCATTGTTTTGTA +
Preference number: 5 (lower is better)
Translates to: VFPTKQASQEDLHFNIFPEPWKY*LLHCFV
Trigger: TACAAAACAATGCAGTAGCAAGTATTTCCATGGTTC...TGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp CAGCCAACCTCTGGAGCCCAGCAGCAGCGGAGCTGTTaGTCGAGGTGGGGGACACAGCGGGTGTACTCCCTC +
Preference number: 6 (lower is better)
Translates to: QPTSGAQQQRSC*SRWGTQRVYSL
Trigger: GAGGGAGTACACCCGCTGTGTCCCCCACCTCGATCAACAGCTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp GCAGCCAACCTCTGGAGCCCAGCAGCAGCGGAGCTGTaGATCGAGGTGGGGGACACAGCGGGTGTACTCCCT +
Preference number: 6 (lower is better)
Translates to: AANLWSPAAAEL*IEVGDTAGVLP
Trigger: AGGGAGTACACCCGCTGTGTCCCCCACCTCGATCAACAGCTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp CCGAACCGGGCACCTCAGCGGGTTGTCAGTGTTCTCTaGCATCTCCACTCCCACTGGGGCCTCGTCGTCTTC +
Preference number: 6 (lower is better)
Translates to: PNRAPQRVVSVL*HLHSHWGLVVF
Trigger: GAAGACGACGAGGCCCCAGTGGGAGTGGAGATGGCAGAGAACACTGACAACCCGCTGAGGTGCCCGGTTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp CACCTAAGCTTCACCACACTTCGGGCAAACCCAACATaGTGGGACTGGGCAGCCAACCTCTGGAGCCCAGCA +
Preference number: 6 (lower is better)
Translates to: HLSFTTLRANPT*WDWAANLWSPA
Trigger: TGCTGGGCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCGAAGTGTGGTGAAGCTTAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 90 bp GACTCCGGCTTCTGTAAAGGCGGGAAGAACCTCAGGTACGTCATCTaGGTGCTGTACTTCAGAGTCCTGGTCCGGCGCATCACGTGGGCA +
Preference number: 6 (lower is better)
Translates to: DSGFCKGGKNLRYVI*VLYFRVLVRRITWA
Trigger: TGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGAAGCCGGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp CCACAGGTACCACAGACTTCTTCCTCCCTCGCCGTCTaGGCTGGGGGAATCCATCTCTGTGTCTTCGTCTTG +
Preference number: 6 (lower is better)
Translates to: PQVPQTSSSLAV*AGGIHLCVFVL
Trigger: CAAGACGAAGACACAGAGATGGATTCCCCCAGCCCAGACGGCGAGGGAGGAAGAAGTCTGTGGTACCTGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp GTAAAGGCGGGAAGAACCTCAGGTACGTCATCTTGGTaGTGTACTTCAGAGTCCTGGTCCGGCGCATCACGT +
Preference number: 6 (lower is better)
Translates to: VKAGRTSGTSSW*CTSESWSGASR
Trigger: ACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp TCAGGTACGTCATCTTGGTGCTGTACTTCAGAGTCCTaGTCCGGCGCATCACGTGGGCAAAGGACAGCTTCA +
Preference number: 6 (lower is better)
Translates to: SGTSSWCCTSES*SGASRGQRTAS
Trigger: TGAAGCTGTCCTTTGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp TCTGTAAAGGCGGGAAGAACCTCAGGTACGTCATCTTaGTGCTGTACTTCAGAGTCCTGGTCCGGCGCATCA +
Preference number: 6 (lower is better)
Translates to: SVKAGRTSGTSS*CCTSESWSGAS
Trigger: TGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp CTGTTGGAACTGCACCTTGTAAGACGCTGTTGGTGTTaGCTGTGGGCTGGGCAGCAGGAGCACTTGCTAAAG +
Preference number: 6 (lower is better)
Translates to: LLELHLVRRCWC*LWAGQQEHLLK
Trigger: CTTTAGCAAGTGCTCCTGCTGCCCAGCCCACAGCAAACACCAACAGCGTCTTACAAGGTGCAGTTCCAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp GTCTGGGCTGGGGGAATCCATCTCTGTGTCTTCGTCTaGTTCGAGAACGTGCCTGGATCCCCTGTCCTTTAT +
Preference number: 6 (lower is better)
Translates to: VWAGGIHLCVFV*FENVPGSPVLY
Trigger: ATAAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGACGAAGACACAGAGATGGATTCCCCCAGCCCAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp TTCTGTAAAGGCGGGAAGAACCTCAGGTACGTCATCTaGGTGCTGTACTTCAGAGTCCTGGTCCGGCGCATC +
Preference number: 6 (lower is better)
Translates to: FCKGGKNLRYVI*VLYFRVLVRRI
Trigger: GATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp CCCACTGGGGCCTCGTCGTCTTCATTTCGTTTCCTCTaGCCAATAGTTACCTTATCTGGCTCTGACTCCGGC +
Preference number: 6 (lower is better)
Translates to: PTGASSSSFRFL*PIVTLSGSDSG
Trigger: GCCGGAGTCAGAGCCAGATAAGGTAACTATTGGCAAGAGGAAACGAAATGAAGACGACGAGGCCCCAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp AAATGTCTTTTGAGCAACTTGAACAAGTCTTCTTGGTaGGGGGAGGCGGTGGGCGGGCAGGTGGAACTGTGT +
Preference number: 6 (lower is better)
Translates to: KCLLSNLNKSSW*GEAVGGQVELC
Trigger: ACACAGTTCCACCTGCCCGCCCACCGCCTCCCCTCACCAAGAAGACTTGTTCAAGTTGCTCAAAAGACATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp TGGCTTTGGCAAGTTCTTCATGTACCTCCCTCACCATaGGAATGCGCGTCAACATGGTGTCCAGGGTTCCAG +
Preference number: 6 (lower is better)
Translates to: WLWQVLHVPPSP*ECASTWCPGFQ
Trigger: CTGGAACCCTGGACACCATGTTGACGCGCATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp ACAAACACTGGCACAGGGACTGGTACCACCATAACCTaGGGCTCACTTGGAGTGTCTGTCTGGCATTCTTTG +
Preference number: 6 (lower is better)
Translates to: TNTGTGTGTTIT*GSLGVSVWHSL
Trigger: CAAAGAATGCCAGACAGACACTCCAAGTGAGCCCCAGGTTATGGTGGTACCAGTCCCTGTGCCAGTGTTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp ATGAAGAGGTATGGGAACAAACACTGGCACAGGGACTaGTACCACCATAACCTGGGGCTCACTTGGAGTGTC +
Preference number: 6 (lower is better)
Translates to: MKRYGNKHWHRD*YHHNLGLTWSV
Trigger: GACACTCCAAGTGAGCCCCAGGTTATGGTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp CTGGGTGTAAAGATGAAGAGGTATGGGAACAAACACTaGCACAGGGACTGGTACCACCATAACCTGGGGCTC +
Preference number: 6 (lower is better)
Translates to: LGVKMKRYGNKH*HRDWYHHNLGL
Trigger: GAGCCCCAGGTTATGGTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp GTCATTCCAGACACTGAGCACCCTTGCAAGGCTCCTTaGATAAGACTTCTGGGTTCCACAGGTACCACAGAC +
Preference number: 6 (lower is better)
Translates to: VIPDTEHPCKAP*IRLLGSTGTTD
Trigger: GTCTGTGGTACCTGTGGAACCCAGAAGTCTTATTCAAGGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp CTTCAGTTTCACAGAGCGGGCTTTACAGCCTTGCTCTaGGGATTCTTGAGAGAGGGCATGGTCTTGAGCACT +
Preference number: 6 (lower is better)
Translates to: LQFHRAGFTALL*GFLREGMVLST
Trigger: AGTGCTCAAGACCATGCCCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAGCCCGCTCTGTGAAACTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp CACAGGGACTGGTACCACCATAACCTGGGGCTCACTTaGAGTGTCTGTCTGGCATTCTTTGTTTTGAGTATG +
Preference number: 6 (lower is better)
Translates to: HRDWYHHNLGLT*SVCLAFFVLSM
Trigger: CATACTCAAAACAAAGAATGCCAGACAGACACTCCAAGTGAGCCCCAGGTTATGGTGGTACCAGTCCCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp GGACAGGAGTATACTGGGTGTAAAGATGAAGAGGTATaGGAACAAACACTGGCACAGGGACTGGTACCACCA +
Preference number: 6 (lower is better)
Translates to: GQEYTGCKDEEV*EQTLAQGLVPP
Trigger: TGGTGGTACCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACCCAGTATACTCCTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp TCAGGTTCGTCTTTAACTCTGTCTAGTAGTCCCTGCTaGGGCGCCACTGCTCTGTCATACTCATCATCCAAA +
Preference number: 6 (lower is better)
Translates to: SGSSLTLSSSPC*GATALSYSSSK
Trigger: TTTGGATGATGAGTATGACAGAGCAGTGGCGCCTCAGCAGGGACTACTAGACAGAGTTAAAGACGAACCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp GTCCGGCGCATCACGTGGGCAAAGGACAGCTTCAAGTaGTCAGTAACATTCCTTAGTTGGAAGTATTTGGTA +
Preference number: 6 (lower is better)
Translates to: VRRITWAKDSFK*SVTFLSWKYLV
Trigger: TACCAAATACTTCCAACTAAGGAATGTTACTGAGCACTTGAAGCTGTCCTTTGCCCACGTGATGCGCCGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 90 bp ATTCTGATGGGAAGTCTGCCTCCAGATCCTGCTCTGTTTCCCCTTTaGAAAACGGTTTCAGTTCTGAATCAGCATCTTGCACAGCATTCG +
Preference number: 6 (lower is better)
Translates to: ILMGSLPPDPALFPL*KTVSVLNQHLAQHS
Trigger: CGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACCGTTTTCAAAAGGGGAAACAGAGCAGGATCTGGAGGCAGACTTCCCATCAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp TCTTTTCTGAGGGACGGAGGCCCTGCAGAAGCAGCTTaGACCATGGAAATACTTGCTACTGCATTGTTTTGT +
Preference number: 6 (lower is better)
Translates to: SFLRDGGPAEAA*TMEILATALFC
Trigger: ACAAAACAATGCAGTAGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTCCGTCCCTCAGAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp GAGGTGACACACATTGAACTACAAAACTTCTTAGACTaGCCCTCAATTTGCAGCACATGGCACTGTCCAGAG +
Preference number: 6 (lower is better)
Translates to: EVTHIELQNFLD*PSICSTWHCPE
Trigger: CTCTGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp GAATCCATCTCTGTGTCTTCGTCTTGTTCGAGAACGTaGCTGGATCCCCTGTCCTTTATTAAGTGGGTCAAA +
Preference number: 6 (lower is better)
Translates to: ESISVSSSCSRT*LDPLSFIKWVK
Trigger: TTTGACCCACTTAATAAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGACGAAGACACAGAGATGGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp CCCCAGTTCCGAACCAATGGATTCTTTACTGGCAAATaGGTAGCTGGAGTCCCTAAAGTTTGTTTCTGGGTT +
Preference number: 6 (lower is better)
Translates to: PQFRTNGFFTGK*VAGVPKVCFWV
Trigger: AACCCAGAAACAAACTTTAGGGACTCCAGCTACCCATTTGCCAGTAAAGAATCCATTGGTTCGGAACTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 72 bp CCATCTCTGTGTCTTCGTCTTGTTCGAGAACGTGCCTaGATCCCCTGTCCTTTATTAAGTGGGTCAAAAGAT +
Preference number: 6 (lower is better)
Translates to: PSLCLRLVRERA*IPCPLLSGSKD
Trigger: ATCTTTTGACCCACTTAATAAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGACGAAGACACAGAGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp ATCTTTTCTGAGGGACGGAGGCCCTGCAGAAGCAGCTaGAACCATGGAAATACTTGCTACTGCATTGTTTTG +
Preference number: 6 (lower is better)
Translates to: IFSEGRRPCRSS*NHGNTCYCIVL
Trigger: CAAAACAATGCAGTAGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTCCGTCCCTCAGAAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp CAGATCCTGTTTGATTCGGCATTCCATAAGACATGCTaGCAAGGGTGGGAGTTAAGTTGTGGTCTGTATCTT +
Preference number: 6 (lower is better)
Translates to: QILFDSAFHKTC*QGWELSCGLYL
Trigger: AAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 72 bp TATTTGATGCAAACGAATTCCCCAGTTCCGAACCAATaGATTCTTTACTGGCAAATGGGTAGCTGGAGTCCC +
Preference number: 6 (lower is better)
Translates to: YLMQTNSPVPNQ*ILYWQMGSWSP
Trigger: GGGACTCCAGCTACCCATTTGCCAGTAAAGAATCCATTGGTTCGGAACTGGGGAATTCGTTTGCATCAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 72 bp GGGTCATACTTTTCACCATTTGGTCTCCGCACCTCTTaGATAAACTGGCATAAGCCCAAACTCAACTCAGAA +
Preference number: 6 (lower is better)
Translates to: GSYFSPFGLRTS*INWHKPKLNSE
Trigger: TTCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATGACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp GAGGCCCTGCAGAAGCAGCTTGAACCATGGAAATACTaGCTACTGCATTGTTTTGTAAAGGTGGGTCACATA +
Preference number: 6 (lower is better)
Translates to: EALQKQLEPWKY*LLHCFVKVGHI
Trigger: TATGTGACCCACCTTTACAAAACAATGCAGTAGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS TCA 72 bp TACCCCATACATATACTTCAGTGTCATTCCAGACACTaGGCACCCTTGCAAGGCTCCTTGAATAAGACTTCT +
Preference number: 6 (lower is better)
Translates to: YPIHILQCHSRH*APLQGSLNKTS
Trigger: AGAAGTCTTATTCAAGGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACACTGAAGTATATGTATGGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS GCA 72 bp TTTCAGATCCTGTTTGATTCGGCATTCCATAAGACATaGTGGCAAGGGTGGGAGTTAAGTTGTGGTCTGTAT +
Preference number: 6 (lower is better)
Translates to: FQILFDSAFHKT*WQGWELSCGLY
Trigger: ATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 72 bp TTTTCACCATTTGGTCTCCGCACCTCTTGGATAAACTaGCATAAGCCCAAACTCAACTCAGAAAAAGTGCAG +
Preference number: 6 (lower is better)
Translates to: FSPFGLRTSWIN*HKPKLNSEKVQ
Trigger: CTGCACTTTTTCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp CGTAATGATTCAGCTCTTCTTCCCAGCTGTGTGGAGTaGATACTGCTTCTGACTCAAGATCACCACTATATG +
Preference number: 6 (lower is better)
Translates to: RNDSALLPSCVE*ILLLTQDHHYM
Trigger: CATATAGTGGTGATCTTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGGAAGAAGAGCTGAATCATTACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CCA 72 bp TTTGATTCGGCATTCCATAAGACATGCTGGCAAGGGTaGGAGTTAAGTTGTGGTCTGTATCTTCAGACATTT +
Preference number: 6 (lower is better)
Translates to: FDSAFHKTCWQG*ELSCGLYLQTF
Trigger: AAATGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9
CDS CCA 72 bp GCCCTCAGTTGCTTTCTCATCATTATCCATAGAGGATaGAATAAACATGGGAACAGGCATAGGAACTGGAAT +
Preference number: 6 (lower is better)
Translates to: ALSCFLIIIHRG*NKHGNRHRNWN
Trigger: ATTCCAGTTCCTATGCCTGTTCCCATGTTTATTCCATCCTCTATGGATAATGATGAGAAAGCAACTGAGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp TCTGATAATTCAGCATCAGAGTCTTCAGATTTGGCTTaGGCAAGTTCTTCATGTACCTCCCTCACCATGAGA +
Preference number: 6 (lower is better)
Translates to: SDNSASESSDLA*ASSSCTSLTMR
Trigger: TCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGATGCTGAATTATCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 90 bp ACTTTAATGCGTAATGATTCAGCTCTTCTTCCCAGCTGTGTGGAGTaGATACTGCTTCTGACTCAAGATCACCACTATATGTACTTCCTT +
Preference number: 6 (lower is better)
Translates to: TLMRNDSALLPSCVE*ILLLTQDHHYMYFL
Trigger: AAGGAAGTACATATAGTGGTGATCTTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGGAAGAAGAGCTGAATCATTACGCATTAAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106108.9
ENSMUST00000135003.2
CDS CAA 72 bp GATCTCAATGATTTGCAAAGCGCACATGGTGTTATTTaGGCTGATTTCTGCTTGTATGAGGTGACACACATT +
Preference number: 6 (lower is better)
Translates to: DLNDLQSAHGVI*ADFCLYEVTHI
Trigger: AATGTGTGTCACCTCATACAAGCAGAAATCAGCCAAAATAACACCATGTGCGCTTTGCAAATCATTGAGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106108.9