RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZMIZ2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041164

Ensembl transcript IDs: ENSMUST00000012612.11, ENSMUST00000102914.10, ENSMUST00000109785.2, ENSMUST00000109786.8, ENSMUST00000109787.8

Found 648 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAGCACCCTGCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATaGCCTCCCCCACCTGGGTGTGGGCCGCAGGGTGGAAATGAGGTG +
Preference number: 1 (lower is better)
Translates to: PAPCLQAQALCQQMQ*PPPPGCGPQGGNEV
Trigger: CACCTCATTTCCACCCTGCGGCCCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 90 bp CCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTaGATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGCTG +
Preference number: 1 (lower is better)
Translates to: PVHQGWQWQAPAQGV*IGSSGRTSRQPVGL
Trigger: CAGCCCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 90 bp AAGGCTGGTGCTCTGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTaGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCT +
Preference number: 1 (lower is better)
Translates to: KAGALYGSEAARLRH*SCRPRVQSQPQQPA
Trigger: AGCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACAGAGCACCAGCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 90 bp AGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTaGGGCTGGGTGAGAAGGGAAGGCTGTGGTGGCATCTTTGAGTGT +
Preference number: 1 (lower is better)
Translates to: RVCALGVQGEPAGSL*GWVRREGCGGIFEC
Trigger: ACACTCAAAGATGCCACCACAGCCTTCCCTTCTCACCCAGCCCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 90 bp CCTTTAATAGATTGCACAGACAGGAGACACAACAGGCCAGCACCCTaGTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCC +
Preference number: 1 (lower is better)
Translates to: PLIDCTDRRHNRPAP*LQAQALCQQMQWPP
Trigger: GGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATCTATTAAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 90 bp GCAGCCAGCTCTGCTGAGGAGGAACAGAAACAGAAGGATCAGTGCTaGACAAGATGCAGGCTGGGTAGGAGCAGGCAGGGTGGAAGGACA +
Preference number: 1 (lower is better)
Translates to: AASSAEEEQKQKDQC*TRCRLGRSRQGGRT
Trigger: TGTCCTTCCACCCTGCCTGCTCCTACCCAGCCTGCATCTTGTCCAGCACTGATCCTTCTGTTTCTGTTCCTCCTCAGCAGAGCTGGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 90 bp GGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTAATAGATTaGACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCC +
Preference number: 1 (lower is better)
Translates to: GRTQPSPPRGSPLID*TDRRHNRPAPCLQA
Trigger: GGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATCTATTAAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 90 bp AAACACAGCTGTACTAATTCTTCACTTTCACAGAAAAGAGAAACTTaGGGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAA +
Preference number: 1 (lower is better)
Translates to: KHSCTNSSLSQKRET*GSSSLENLHRAEPE
Trigger: TTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCCCCAAGTTTCTCTTTTCTGTGAAAGTGAAGAATTAGTACAGCTGTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGATGGAGGGAGGCTGTaGGGCCCACTGGCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGDGGRL*GPLAWG
Trigger: GCCCCAGGCCAGTGGGCCTCACAGCCTCCCTCCATC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGATGGAGGGAGGCTGTaGGGCCCACTGGCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: RLPGSGTGAADQGYRASLDGGRL*GPLAWG
Trigger: GCCCCAGGCCAGTGGGCCTCACAGCCTCCCTCCATC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCGATGGAGGGAGGCTGTaGGGCCCACTGGCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: AQALELQTKGTEPASAASDGGRL*GPLAWG
Trigger: GCCCCAGGCCAGTGGGCCTCACAGCCTCCCTCCATC...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTTGGCCTGGGGCCCCATaGAGCGCAGGGCTGCTTCCA +
Preference number: 2 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGWPGAP*SAGLLP
Trigger: TGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGCCA...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGACCCCAGCCTCCACCTaGAGCTCAGGGTGGAGGGAG +
Preference number: 2 (lower is better)
Translates to: AGPGALPADAMASPTWVWTPAST*SSGWRE
Trigger: CTCCCTCCACCCTGAGCTCCAGGTGGAGGCTGGGGT...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCCAGCAGGCAGCCTGTaGGGCTGGGTGAGAAGGGAA +
Preference number: 2 (lower is better)
Translates to: AWGPMERRAASSSSGLAVPAGSL*GWVRRE
Trigger: TTCCCTTCTCACCCAGCCCCACAGGCTGCCTGCTGG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGTGGCCTGGGGCCCCATaGAGCGCAGGGCTGCTTCCA +
Preference number: 2 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVWPGAP*SAGLLP
Trigger: TGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGCCA...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCCAGTTCATCAGGGCTaGCAGTGGCAGGCCCCAGCT +
Preference number: 2 (lower is better)
Translates to: RLPGSGTGAADQGYRASLPVHQG*QWQAPA
Trigger: AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCTGTGGTGGCATCTTTaGGTGTGTCTTCGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPALWWHL*VCLRQA
Trigger: GGCCTGGCGAAGACACACTCAAAGATGCCACCACAG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTCATGGAGCGCAGGGCTaGTTCCAGTTCATCAGGGCT +
Preference number: 2 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGHGAQG*FQFIRA
Trigger: AGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATG...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACTGGCCTGGGGCCCCATaGAGCGCAGGGCTGCTTCCA +
Preference number: 2 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYWPGAP*SAGLLP
Trigger: TGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGCCA...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCATGGAGCGCAGGGCTaGTTCCAGTTCATCAGGGCT +
Preference number: 2 (lower is better)
Translates to: RLPGSGTGAADQGYRASLHGAQG*FQFIRA
Trigger: AGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCCAGTTCATCAGGGCTaGCAGTGGCAGGCCCCAGCT +
Preference number: 2 (lower is better)
Translates to: RVEGQVQGHESGAEGCARPVHQG*QWQAPA
Trigger: AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTCTGTGGTGGCATCTTTaGGTGTGTCTTCGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: EEPLNQIQLGGSARPPKALWWHL*VCLRQA
Trigger: GGCCTGGCGAAGACACACTCAAAGATGCCACCACAG...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGTGCTCTGTATGGTTCTaGGGCTGCCAGGCTCAGGCA +
Preference number: 2 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQACSVWF*GCQAQA
Trigger: TGCCTGAGCCTGGCAGCCTCAGAACCATACAGAGCA...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGCTGTGGTGGCATCTTTaGGTGTGTCTTCGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: SSGCVHWEFRENQQAACGLWWHL*VCLRQA
Trigger: GGCCTGGCGAAGACACACTCAAAGATGCCACCACAG...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCGATGGAGGGAGGCTGTaGGGCCCACTGGCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSDGGRL*GPLAWG
Trigger: GCCCCAGGCCAGTGGGCCTCACAGCCTCCCTCCATC...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTACAAGTGCAAGGCCATaGGTCTGGGGCAGAGGGCTG +
Preference number: 2 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSTSARP*VWGRGL
Trigger: CAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGT...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGCCAGCAGGCAGCCTGTaGGGCTGGGTGAGAAGGGAA +
Preference number: 2 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLPAGSL*GWVRRE
Trigger: TTCCCTTCTCACCCAGCCCCACAGGCTGCCTGCTGG...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTTGCTCTGTATGGTTCTaGGGCTGCCAGGCTCAGGCA +
Preference number: 2 (lower is better)
Translates to: SLHLELRVEGGTPKPDSACSVWF*GCQAQA
Trigger: TGCCTGAGCCTGGCAGCCTCAGAACCATACAGAGCA...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTGGGTGGAAGGACAAGTaGAAGGCCATGAGTCTGGGG +
Preference number: 2 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAGWKDK*KAMSLG
Trigger: CCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCAGAAGGATCAGTGCTaGACAAGATGCAGGCTGGGT +
Preference number: 2 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAQKDQC*TRCRLG
Trigger: ACCCAGCCTGCATCTTGTCCAGCACTGATCCTTCTG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 90 bp TTAATAGATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTaGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCA +
Preference number: 2 (lower is better)
Translates to: LIDCTDRRHNRPAPC*QAQALCQQMQWPPP
Trigger: TGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATCTATTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGACATGGAGCGCAGGGCTaGTTCCAGTTCATCAGGGCT +
Preference number: 2 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGHGAQG*FQFIRA
Trigger: AGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATG...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTAGCAGCCAGCTCTGCTaGGGAGGAACAGAAACAGAA +
Preference number: 2 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSSSQLC*GGTETE
Trigger: TTCTGTTTCTGTTCCTCCTCAGCAGAGCTGGCTGCT...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGCAGCCAGCTCTGCTaGGGAGGAACAGAAACAGAA +
Preference number: 2 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYSSQLC*GGTETE
Trigger: TTCTGTTTCTGTTCCTCCTCAGCAGAGCTGGCTGCT...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCAGAAGGATCAGTGCTaGACAAGATGCAGGCTGGGT +
Preference number: 2 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSQKDQC*TRCRLG
Trigger: ACCCAGCCTGCATCTTGTCCAGCACTGATCCTTCTG...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 90 bp AGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTAATAGATaGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGC +
Preference number: 2 (lower is better)
Translates to: RKDSAKPTKRESFNR*HRQETQQASTLLAG
Trigger: GCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATCTATTAAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCAGAAAAGAGAAACTTaGGGGAGCAGCTCACTGGAG +
Preference number: 2 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSQKRET*GSSSLE
Trigger: CTCCAGTGAGCTGCTCCCCCAAGTTTCTCTTTTCTG...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTAGCAGCCAGCTCTGCTaGGGAGGAACAGAAACAGAA +
Preference number: 2 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFSSQLC*GGTETE
Trigger: TTCTGTTTCTGTTCCTCCTCAGCAGAGCTGGCTGCT...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGTGCTCTGTATGGTTCTaGGGCTGCCAGGCTCAGGCA +
Preference number: 2 (lower is better)
Translates to: SSLENLHRAEPESPPLEECSVWF*GCQAQA
Trigger: TGCCTGAGCCTGGCAGCCTCAGAACCATACAGAGCA...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCTGGCCTGGGGCCCCATaGAGCGCAGGGCTGCTTCCA +
Preference number: 2 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPWPGAP*SAGLLP
Trigger: TGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGCCA...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTAAACAGAAGGATCAGTaGTGGACAAGATGCAGGCTG +
Preference number: 2 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFKQKDQ*WTRCRL
Trigger: CAGCCTGCATCTTGTCCAGCACTGATCCTTCTGTTT...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCACCAGCAGGCAGCCTGTaGGGCTGGGTGAGAAGGGAA +
Preference number: 2 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPPAGSL*GWVRRE
Trigger: TTCCCTTCTCACCCAGCCCCACAGGCTGCCTGCTGG...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGCAGAAGGATCAGTGCTaGACAAGATGCAGGCTGGGT +
Preference number: 2 (lower is better)
Translates to: SSLENLHRAEPESPPLEEQKDQC*TRCRLG
Trigger: ACCCAGCCTGCATCTTGTCCAGCACTGATCCTTCTG...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACCAGAAGGATCAGTGCTaGACAAGATGCAGGCTGGGT +
Preference number: 2 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYQKDQC*TRCRLG
Trigger: ACCCAGCCTGCATCTTGTCCAGCACTGATCCTTCTG...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCACTGTGGTGGCATCTTTaGGTGTGTCTTCGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPLWWHL*VCLRQA
Trigger: GGCCTGGCGAAGACACACTCAAAGATGCCACCACAG...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACAAGTGCAAGGCCATaGGTCTGGGGCAGAGGGCTG +
Preference number: 2 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPTSARP*VWGRGL
Trigger: CAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGT...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCACATGGAGCGCAGGGCTaGTTCCAGTTCATCAGGGCT +
Preference number: 2 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPHGAQG*FQFIRA
Trigger: AGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATG...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCAAACAGAAGGATCAGTaGTGGACAAGATGCAGGCTG +
Preference number: 2 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSKQKDQ*WTRCRL
Trigger: CAGCCTGCATCTTGTCCAGCACTGATCCTTCTGTTT...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR TCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACTGTGGTGGCATCTTTaGGTGTGTCTTCGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPLWWHL*VCLRQA
Trigger: GGCCTGGCGAAGACACACTCAAAGATGCCACCACAG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACCTATGTACATTGTTGTaGTTTATTGCTCCCACCCCA +
Preference number: 2 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYLCTLL*FIAPTP
Trigger: TGGGGTGGGAGCAATAAAGCACAACAATGTACATAG...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 72 bp TGCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATaGCCTCCCCCACCTGGGTGTGGGCCGCAGGGTGGA +
Preference number: 3 (lower is better)
Translates to: CLQAQALCQQMQ*PPPPGCGPQGG
Trigger: TCCACCCTGCGGCCCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 72 bp CAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTaGATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCT +
Preference number: 3 (lower is better)
Translates to: QGWQWQAPAQGV*IGSSGRTSRQP
Trigger: AGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 72 bp CCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTaGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATT +
Preference number: 3 (lower is better)
Translates to: PWSAGLLPVHQG*QWQAPAQGVCI
Trigger: AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTTCTGGAGCAGTGAGCTaGATGGAGGGAGGCTGTGAG +
Preference number: 3 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGSGAVS*MEGGCE
Trigger: CTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGA...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR TCA 72 bp GGGCTGGGTGAGAAGGGAAGGCTGTGGTGGCATCTTTaGGTGTGTCTTCGCCAGGCCAGGGGTCACCACAGG +
Preference number: 3 (lower is better)
Translates to: GLGEKGRLWWHL*VCLRQARGHHR
Trigger: CCTGTGGTGACCCCTGGCCTGGCGAAGACACACTCAAAGATGCCACCACAGCCTTCCCTTCTCACCCAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 72 bp GCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTaGAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGC +
Preference number: 3 (lower is better)
Translates to: AQTGDTTGQHPA*RPRRFASRCNG
Trigger: GCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGTCTGGAGCAGTGAGCTaGATGGAGGGAGGCTGTGAG +
Preference number: 3 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQASGAVS*MEGGCE
Trigger: CTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGA...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 72 bp TATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTaGAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: YGSEAARLRHWS*RPRVQSQPQQP
Trigger: TGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CCA 72 bp GCTCTGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTaGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAG +
Preference number: 3 (lower is better)
Translates to: ALYGSEAARLRH*SCRPRVQSQPQ
Trigger: CTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACAGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 72 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTaGTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAA +
Preference number: 3 (lower is better)
Translates to: DCTDRRHNRPAP*LQAQALCQQMQ
Trigger: TTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR TCA 72 bp TGGAAGGCGCAGGCCAGTCCAGAGGAACATGCTGACTaGAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCA +
Preference number: 3 (lower is better)
Translates to: WKAQASPEEHAD*NSGPSLSQLLA
Trigger: TGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTTCCTCTGGACTGGCCTGCGCCTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR GCA 72 bp CAGCCAAGCCCACCAAGAGGGAGTCCTTTAATAGATTaGACAGACAGGAGACACAACAGGCCAGCACCCTGC +
Preference number: 3 (lower is better)
Translates to: QPSPPRGSPLID*TDRRHNRPAPC
Trigger: GCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATCTATTAAAGGACTCCCTCTTGGTGGGCTTGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTCATTGTTGTGCTTTATaGCTCCCACCCCAGCCTCCA +
Preference number: 3 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFHCCAL*LPPQPP
Trigger: TGGAGGCTGGGGTGGGAGCAATAAAGCACAACAATG...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGACACTATGTACATTGTaGTGCTTTATTGCTCCCACC +
Preference number: 3 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQATLCTL*CFIAPT
Trigger: GGTGGGAGCAATAAAGCACAACAATGTACATAGTGT...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTACAGAAAAGAGAAACTaGGGGGAGCAGCTCACTGGA +
Preference number: 3 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPTEKRN*GEQLTG
Trigger: TCCAGTGAGCTGCTCCCCCAAGTTTCTCTTTTCTGT...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCATCTGGAGCAGTGAGCTaGATGGAGGGAGGCTGTGAG +
Preference number: 3 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPSGAVS*MEGGCE
Trigger: CTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGA...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCATCTGGAGCAGTGAGCTaGATGGAGGGAGGCTGTGAG +
Preference number: 3 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPSGAVS*MEGGCE
Trigger: CTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGA...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR-3UTR CAA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTTCTACACTATGTACATaGTTGTGCTTTATTGCTCCC +
Preference number: 3 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFSTLCT*LCFIAP
Trigger: GGGAGCAATAAAGCACAACAATGTACATAGTGTAGA...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGGGGGAGCCCCAGGCCTaGAGGGCCTCCTGCATACCC +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWGEPQA*RASCIP
Trigger: GGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCC...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
70% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGGGTTGGCCCAGGGGCTaGCGGGATGCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWGWPRG*RDAGEG
Trigger: CCCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACC...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGGCTGTCGCGGTGGCTaGAGCAGCAGCCATGGCAGC +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQGCRGG*SSSHGS
Trigger: GCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCC...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCAGCCACCGTGGCTGTaGCTGTGGCTGTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVQPPWL*LWLSRW
Trigger: CCACCGCGACAGCCACAGCCACAGCCACGGTGGCTG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGGGGAGCCCCAGGCCTaGAGGGCCTCCTGCATACCC +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLGEPQA*RASCIP
Trigger: GGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCATTGGGCCCAGGGGTaGCAGGGATGGTGCCGCTAC +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVHWAQG*QGWCRY
Trigger: GTAGCGGCACCATCCCTGGCACCCCTGGGCCCAATG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGCATTGGGCCCAGGGGTaGCAGGGATGGTGCCGCTAC +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWHWAQG*QGWCRY
Trigger: GTAGCGGCACCATCCCTGGCACCCCTGGGCCCAATG...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGTGGGTCCAGGTGGCCTaGTGGTGCCATCTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQWVQVA*WCHLAW
Trigger: CCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCA...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTGCCGTGCTGCATGTGTaGGGAGCCCCAGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAAVLHV*GAPGLQ
Trigger: CTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGC...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGCCACCGTGGCTGTaGCTGTGGCTGTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAQPPWL*LWLSRW
Trigger: CCACCGCGACAGCCACAGCCACAGCCACGGTGGCTG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCCCCTGTCGAGGCAGTaGCTGCCCCTGCGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAPLSRQ*LPLRRP
Trigger: GGGCCTCCGCAGGGGCAGCCACTGCCTCGACAGGGG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCGTCATGGGTGGTGTaGGATTCCCCGGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQASWVV*DSPAVG
Trigger: CCCCACTGCCGGGGAATCCCACACCACCCATGACGC...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGCCCCATCCTCTCCATTaGGCCCAGGGGTGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWPHPLH*AQGCQG
Trigger: TCCCTGGCACCCCTGGGCCCAATGGAGAGGATGGGG...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGTGGGCTGGGTCCAGGTaGCCTGCTGGTGCCATCTGG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVWAGSR*PAGAIW
Trigger: CCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCA...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGGGGTGGGCCCGAGGTTaGGAGTGTGCAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWGWARG*ECAVLV
Trigger: CACCAGGACTGCACACTCCCAACCTCGGGCCCACCC...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQDTCGG*RVQGAE
Trigger: CTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTC...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGCCTTCAGCAAACGCCTaGTGTCCCAGGCACTGCGGG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQPSANA*CPRHCG
Trigger: CCCGCAGTGCCTGGGACAGCAGGCGTTTGCTGAAGG...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGGGGGAGCCCCAGGCCTaGAGGGCCTCCTGCATACCC +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAGEPQA*RASCIP
Trigger: GGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCC...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGGATGGTGTAGCTGAGTaGCTGGGGTGGGCCCGAGGT +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWDGVAE*LGWARG
Trigger: ACCTCGGGCCCACCCCAGGCACTCAGCTACACCATC...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGGTTGGCCCAGGGGCTaGCGGGATGCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPGWPRG*RDAGEG
Trigger: CCCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGCCGTGCTGCATGTGTaGGGAGCCCCAGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRAVLHV*GAPGLQ
Trigger: CTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCCCTGTCGAGGCAGTaGCTGCCCCTGCGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVPLSRQ*LPLRRP
Trigger: GGGCCTCCGCAGGGGCAGCCACTGCCTCGACAGGGG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCCCCTGTCGAGGCAGTaGCTGCCCCTGCGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALPLSRQ*LPLRRP
Trigger: GGGCCTCCGCAGGGGCAGCCACTGCCTCGACAGGGG...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTCCCCATCCTCTCCATTaGGCCCAGGGGTGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGPHPLH*AQGCQG
Trigger: TCCCTGGCACCCCTGGGCCCAATGGAGAGGATGGGG...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCCACGGGCTGGGAGCTaGATCCTGCGGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVPRAGS*ILRKVM
Trigger: CATCACCTTCCGCAGGATCCAGCTCCCAGCCCGTGG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGGTCGTGACCACGGGCTaGGAGCTGGATCCTGCGGAA +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWVVTTG*ELDPAE
Trigger: TTCCGCAGGATCCAGCTCCCAGCCCGTGGTCACGAC...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 72 bp CAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCTTaGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTG +
Preference number: 4 (lower is better)
Translates to: QQASTLLAGPGA*PADAMASPTWV
Trigger: CACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCATTCCTCCCATGCCTaGAGGGTTCATGCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVHSSHA*RVHARG
Trigger: CCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTTGGCGCCCTGCCCGTTaGACTGCTCTGTGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAWRPAR*TALWAC
Trigger: ACAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCA...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTCCAAAGCTGGTTCTaGGGCCTCCCCTGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGVQSWF*GLPCPS
Trigger: ACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGAC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTTGCTGTCCCAGGCACTaGGGGGAGGTCAAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGCCPRH*GEVKAE
Trigger: CTCTGCCTTGACCTCCCCGCAGTGCCTGGGACAGCA...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGGCTGTCGCGGTGGCTaGAGCAGCAGCCATGGCAGC +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPGCRGG*SSSHGS
Trigger: GCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGTGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTC +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVCLKGS*QGAHWV
Trigger: GACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCA...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGTGTCGAGGCAGTGGCTaGCCCTGCGGAGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGCRGSG*PCGGPG
Trigger: CCCTGGGCCTCCGCAGGGGCAGCCACTGCCTCGACA...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGGGCAGGGCTCACAGTaGGGCAGCGCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLGQGSQ*GSASAL
Trigger: CAGTGCTGAAGCGCTGCCGCACTGTGAGCCCTGCCC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGTTGGCCCAGGGGCTaGCGGGATGCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALGWPRG*RDAGEG
Trigger: CCCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCAGCCACCGTGGCTGTaGCTGTGGCTGTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVQPPWL*LWLSRW
Trigger: CCACCGCGACAGCCACAGCCACAGCCACGGTGGCTG...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCAGCCACCGTGGCTGTaGCTGTGGCTGTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAQPPWL*LWLSRW
Trigger: CCACCGCGACAGCCACAGCCACAGCCACGGTGGCTG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTTGTAATGCAGTCCCGTaGGGCCAGGCGCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGCNAVP*GQAQTG
Trigger: CCCTGTCTGCGCCTGGCCCCACGGGACTGCATTACA...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGTGCAGCACGAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTCGTGCTGCA...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTGCAGCGCTTCAGCACTaGCCCATCCGGCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAAALQH*PIRLLL
Trigger: AAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGC...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCTGGGCTGGGTCCAGGTaGCCTGCTGGTGCCATCTGG +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLWAGSR*PAGAIW
Trigger: CCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCA...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWGGPGL*AGSRWP
Trigger: AGGCCACCTGGACCCAGCCCATAATCCTGGACCACC...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCAGCTGCTGCTTGTGTaGAGTCAGTTGAGGGCCGTG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVQLLLV*SQLRAV
Trigger: CACGGCCCTCAACTGACTTCACACAAGCAGCAGCTG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGCCCATCGCTCCATACTaGCTTAGCTCCTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWPIAPY*LSSWLC
Trigger: GCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGG...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRDTCGG*RVQGAE
Trigger: CTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGGATCCTGCGGAAGGTaGTGGGGCACTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGGSCGR*WGTSGT
Trigger: TGTCCCTGAAGTGCCCCATCACCTTCCGCAGGATCC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTGGGGAGCCCCAGGCCTaGAGGGCCTCCTGCATACCC +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAGEPQA*RASCIP
Trigger: GGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCC...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGCTGTCGCGGTGGCTaGAGCAGCAGCCATGGCAGC +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALGCRGG*SSSHGS
Trigger: GCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTCTTAGCTCCTGGCTCTaGTTCTCCTGCAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGLSSWL*FSCRAA
Trigger: GGCTGCCCTGCAGGAGAAGCAGAGCCAGGAGCTAAG...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCATTGGGCCCAGGGGTaGCAGGGATGGTGCCGCTAC +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFHWAQG*QGWCRY
Trigger: GTAGCGGCACCATCCCTGGCACCCCTGGGCCCAATG...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTGGGCAGGGCTCACAGTaGGGCAGCGCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAGQGSQ*GSASAL
Trigger: CAGTGCTGAAGCGCTGCCGCACTGTGAGCCCTGCCC...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTGGTTGGCCCAGGGGCTaGCGGGATGCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAGWPRG*RDAGEG
Trigger: CCCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACC...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGTTCCTGCAGGGCCCATaGGGTTCCCTAAAACCTGGC +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVFLQGP*GSLKPG
Trigger: GCCAGGTTTTAGGGAACCCCATGGGCCCTGCAGGAA...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGCCGTGCTGCATGTGTaGGGAGCCCCAGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGAVLHV*GAPGLQ
Trigger: CTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGC...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGGGCCAGGAGCATACTaGGCAGTGTTGGCTGCATAC +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVGPGAY*AVLAAY
Trigger: GTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCGTCATGGGTGGTGTaGGATTCCCCGGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPASWVV*DSPAVG
Trigger: CCCCACTGCCGGGGAATCCCACACCACCCATGACGC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCAAGGAGCTGAGGCCTaGCTTGAGGTCAGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVQGAEA*LEVRQE
Trigger: TTCCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTAGGCTTCACAGGCACTaGCTTCCAGCTGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPARLHRH*LPAARG
Trigger: CCCACGTGCAGCTGGAAGCCAGTGCCTGTGAAGCCT...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAATAGTCGCTGGGGGTTaGGGCCGAAGGGGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRIVAGG*GRRGLQ
Trigger: TTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTAT...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCATAGTCGCTGGGGGTTaGGGCCGAAGGGGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLIVAGG*GRRGLQ
Trigger: TTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTAT...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGAGTTGGAACCCTGGCTaGGATAGTCGCTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQSWNPG*DSRWGL
Trigger: CAACCCCCAGCGACTATCCCAGCCAGGGTTCCAACT...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCCTGCTGGTGCCATCTaGCCTGGGAGGCAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAPAGAI*PGRQGV
Trigger: TACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTCCAGGTGGCCTGCTaGTGCCATCTGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGVQVAC*CHLAWE
Trigger: CTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGAC...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGGGPGL*AGSRWP
Trigger: AGGCCACCTGGACCCAGCCCATAATCCTGGACCACC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGGGTGGGCCCGAGGTTaGGAGTGTGCAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPGWARG*ECAVLV
Trigger: CACCAGGACTGCACACTCCCAACCTCGGGCCCACCC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCTGAGTGCCTGGGGTaGGCCCGAGGTTGGGAGTGT +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPAECLG*ARGWEC
Trigger: ACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGCATCACTGCTGTTTGTaGGGAGGTCAGGTGGGCCCA +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWHHCCL*GGQVGP
Trigger: TGGGCCCACCTGACCTCCCCACAAACAGCAGTGATG...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCCCAGGCACTGGCTCTaGGTTGCGTTGCCAACTCCC +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLPRHWL*VALPTP
Trigger: GGGAGTTGGCAACGCAACCCAGAGCCAGTGCCTGGG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102914.10
CDS-3UTR TCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAA +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQSDPAG*VALCCQ
Trigger: TTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACT...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGCTGCTGCTTGTGTaGAGTCAGTTGAGGGCCGTG +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAQLLLV*SQLRAV
Trigger: CACGGCCCTCAACTGACTTCACACAAGCAGCAGCTG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCCATTCCTCCCATGCCTaGAGGGTTCATGCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASHSSHA*RVHARG
Trigger: CCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATG...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCTGGCGCCCTGCCCGTTaGACTGCTCTGTGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFWRPAR*TALWAC
Trigger: ACAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCA...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGDTCGG*RVQGAE
Trigger: CTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTC...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAACCATCACCGTGTGGTaGAGGGGGCAGGGCGGGTTT +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPTITVW*RGQGGF
Trigger: AAACCCGCCCTGCCCCCTGCACCACACGGTGATGGT...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGGTCAAGGCAGAGCTaGCACCTGCCACACCAGGCA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLRSRQS*HLPHQA
Trigger: TGCCTGGTGTGGCAGGTGGCAGCTCTGCCTTGACCT...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGATGCTGTCCCAGGCACTaGGGGGAGGTCAAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGCCPRH*GEVKAE
Trigger: CTCTGCCTTGACCTCCCCGCAGTGCCTGGGACAGCA...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGAGCAGCCATGGCAGCTaGAGCTGCTGCTTGTGTGAA +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQSSHGS*SCCLCE
Trigger: TTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCT...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACTTAGCTCCTGGCTCTaGTTCTCCTGCAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRLSSWL*FSCRAA
Trigger: GGCTGCCCTGCAGGAGAAGCAGAGCCAGGAGCTAAG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCCTTAGCTCCTGGCTCTaGTTCTCCTGCAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASLSSWL*FSCRAA
Trigger: GGCTGCCCTGCAGGAGAAGCAGAGCCAGGAGCTAAG...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGTCGAGGCAGTGGCTaGCCCTGCGGAGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLCRGSG*PCGGPG
Trigger: CCCTGGGCCTCCGCAGGGGCAGCCACTGCCTCGACA...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTGTCGAGGCAGTGGCTaGCCCTGCGGAGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPCRGSG*PCGGPG
Trigger: CCCTGGGCCTCCGCAGGGGCAGCCACTGCCTCGACA...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGCATTGGGCCCAGGGGTaGCAGGGATGGTGCCGCTAC +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGHWAQG*QGWCRY
Trigger: GTAGCGGCACCATCCCTGGCACCCCTGGGCCCAATG...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAATGCCGTCTTGTTaGATACCGGACACCTCCAGG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVAMPSC*IPDTSR
Trigger: CCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGGGCAGGGCTCACAGTaGGGCAGCGCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGGQGSQ*GSASAL
Trigger: CAGTGCTGAAGCGCTGCCGCACTGTGAGCCCTGCCC...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGGCAGGGCTCACAGTaGGGCAGCGCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALGQGSQ*GSASAL
Trigger: CAGTGCTGAAGCGCTGCCGCACTGTGAGCCCTGCCC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTGGGTCCAGGTGGCCTaGTGGTGCCATCTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALWVQVA*WCHLAW
Trigger: CCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCA...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCCGAGGTTGGGAGTGTaGAGTCCTGGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLPRLGV*SPGGPG
Trigger: TCCTGGACCACCAGGACTGCACACTCCCAACCTCGG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGATGGTGTAGCTGAGTaGCTGGGGTGGGCCCGAGGT +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPDGVAE*LGWARG
Trigger: ACCTCGGGCCCACCCCAGGCACTCAGCTACACCATC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCGCACTGGCTCTGGGTTaGGTTGCCAACTCCCCACAC +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASALALG*VANSPH
Trigger: GTGTGGGGAGTTGGCAACGCAACCCAGAGCCAGTGC...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102914.10
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGGGTTCCCTAAAACCTaGCTCTGGGTTGCGTTGCCA +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVGFPKT*LWVALP
Trigger: TGGCAACGCAACCCAGAGCCAGGTTTTAGGGAACCC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTTTCCTGCAGGGCCCATaGGGTTCCCTAAAACCTGGC +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAFLQGP*GSLKPG
Trigger: GCCAGGTTTTAGGGAACCCCATGGGCCCTGCAGGAA...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTTGTAATGCAGTCCCGTaGGGCCAGGCGCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKACNAVP*GQAQTG
Trigger: CCCTGTCTGCGCCTGGCCCCACGGGACTGCATTACA...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCGTCATGGGTGGTGTaGGATTCCCCGGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARASWVV*DSPAVG
Trigger: CCCCACTGCCGGGGAATCCCACACCACCCATGACGC...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAAGGAGCTGAGGCCTaGCTTGAGGTCAGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAQGAEA*LEVRQE
Trigger: TTCCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCTGCAGCACGAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTCGTGCTGCA...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGGTCGTGACCACGGGCTaGGAGCTGGATCCTGCGGAA +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAVVTTG*ELDPAE
Trigger: TTCCGCAGGATCCAGCTCCCAGCCCGTGGTCACGAC...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCAGGCTTCACAGGCACTaGCTTCCAGCTGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASRLHRH*LPAARG
Trigger: CCCACGTGCAGCTGGAAGCCAGTGCCTGTGAAGCCT...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCGTAGGAGATTGGGGGTaGCCCCTGGGTGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASVGDWG*PLGELS
Trigger: GCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTAC...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGTAGGAGATTGGGGGTaGCCCCTGGGTGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRVGDWG*PLGELS
Trigger: GCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTAC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGAGTCAGGAGGCTGCTaGGAATGTCAGACTGGTAGG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVESGGC*ECQTGR
Trigger: CCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGAGGAGTAGACTTGTCTaGAGTCAGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: AGPGALPADAMASPTWVWRSRLV*SQEAAG
Trigger: CCCAGCAGCCTCCTGACTCCAGACAAGTCTACTCCT...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGTCCAGGTGGCCTGCTaGTGCCATCTGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARVQVAC*CHLAWE
Trigger: CTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGAC...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTTGGGCTGGGTCCAGGTaGCCTGCTGGTGCCATCTGG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVWAGSR*PAGAIW
Trigger: CCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCA...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTGGGTGGGCCCGAGGTTaGGAGTGTGCAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVGWARG*ECAVLV
Trigger: CACCAGGACTGCACACTCCCAACCTCGGGCCCACCC...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCTGAGTGCCTGGGGTaGGCCCGAGGTTGGGAGTGT +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARAECLG*ARGWEC
Trigger: ACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGC...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCACATTCCTCCCATGCCTaGAGGGTTCATGCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPHSSHA*RVHARG
Trigger: CCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATG...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGDTCGG*RVQGAE
Trigger: CTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTC...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGTCCCCCGCTCACAGTTaGGCTGTAAGTATGACTCCA +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVSPAHS*AVSMTP
Trigger: TGGAGTCATACTTACAGCTCAACTGTGAGCGGGGGA...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGGCCCCATCATGCCTaGGGCAGGATTGAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLRPHHA*GRIESQ
Trigger: CTGGCTTTCAATCCTGCCTCAGGCATGATGGGGCCT...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAAGGCCCCATCATGCCTaGGGCAGGATTGAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRRPHHA*GRIESQ
Trigger: CTGGCTTTCAATCCTGCCTCAGGCATGATGGGGCCT...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGTCCAAAGCTGGTTCTaGGGCCTCCCCTGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGVQSWF*GLPCPS
Trigger: ACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGAC...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGACCATCACCGTGTGGTaGAGGGGGCAGGGCGGGTTT +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGTITVW*RGQGGF
Trigger: AAACCCGCCCTGCCCCCTGCACCACACGGTGATGGT...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTACCATCACCGTGTGGTaGAGGGGGCAGGGCGGGTTT +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARTITVW*RGQGGF
Trigger: AAACCCGCCCTGCCCCCTGCACCACACGGTGATGGT...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCGGCAGAGCTGCCACCTaGCACACCAGGCATCATGGA +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFGRAAT*HTRHHG
Trigger: TCCATGATGCCTGGTGTGGCAGGTGGCAGCTCTGCC...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTTGCTGTCCCAGGCACTaGGGGGAGGTCAAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVCCPRH*GEVKAE
Trigger: CTCTGCCTTGACCTCCCCGCAGTGCCTGGGACAGCA...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTTGCTGTCCCAGGCACTaGGGGGAGGTCAAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCICCPRH*GEVKAE
Trigger: CTCTGCCTTGACCTCCCCGCAGTGCCTGGGACAGCA...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCTTCAGCAAACGCCTaGTGTCCCAGGCACTGCGGG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVPSANA*CPRHCG
Trigger: CCCGCAGTGCCTGGGACAGCAGGCGTTTGCTGAAGG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGCATGGCAGCTGCAGCTaGTGCTTGTGTGAAGTCAGT +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQHGSCS*CLCEVS
Trigger: ACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATG...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCTGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTC +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFCLKGS*QGAHWV
Trigger: GACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCA...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGTGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTC +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVCLKGS*QGAHWV
Trigger: GACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCA...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVPSFLP*LKGSCQ
Trigger: CTGGCATGAACCCTTCAGGCATGGGAGGAATGATGG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRLGSVG*ILASLQ
Trigger: CTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCCTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASLGSVG*ILASLQ
Trigger: CTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAG...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACTGGGTCCAGGTGGCCTaGTGGTGCCATCTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYWVQVA*WCHLAW
Trigger: CCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCA...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGACCGAGGTTGGGAGTGTaGAGTCCTGGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGPRLGV*SPGGPG
Trigger: TCCTGGACCACCAGGACTGCACACTCCCAACCTCGG...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGGCTGCCGGGATaGAGGGGAAGGGTTTGGATG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVQGLPG*RGRVWM
Trigger: CATCCAAACCCTTCCCCTGCATCCCGGCAGCCCCTG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCAGGGGCTGCCGGGATaGAGGGGAAGGGTTTGGATG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARQGLPG*RGRVWM
Trigger: CATCCAAACCCTTCCCCTGCATCCCGGCAGCCCCTG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCAAGGAGCTGAGGCCTaGCTTGAGGTCAGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLQGAEA*LEVRQE
Trigger: TTCCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCGCAGCTCATCACAATaGACACTTGCGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPARSSSQ*TLAEGD
Trigger: GTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCCACGGGCTGGGAGCTaGATCCTGCGGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALPRAGS*ILRKVM
Trigger: CATCACCTTCCGCAGGATCCAGCTCCCAGCCCGTGG...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGTCGTGACCACGGGCTaGGAGCTGGATCCTGCGGAA +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARVVTTG*ELDPAE
Trigger: TTCCGCAGGATCCAGCTCCCAGCCCGTGGTCACGAC...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTCGTGACCACGGGCTaGGAGCTGGATCCTGCGGAA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIVVTTG*ELDPAE
Trigger: TTCCGCAGGATCCAGCTCCCAGCCCGTGGTCACGAC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGAACTCAGCAAGGTTTaGGGTGGTGGGTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQELSKV*GGGCSR
Trigger: TCTGCTACACCCACCACCCCAAACCTTGCTGAGTTC...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGTAGGAGATTGGGGGTaGCCCCTGGGTGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPVGDWG*PLGELS
Trigger: GCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTAC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGAGTCAGGAGGCTGCTaGGAATGTCAGACTGGTAGG +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGESGGC*ECQTGR
Trigger: CCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTGTCCAGGTGGCCTGCTaGTGCCATCTGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAVQVAC*CHLAWE
Trigger: CTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGAC...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGTCCAGGATTATGGGCTaGGTCCAGGTGGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQASRIMG*VQVACW
Trigger: CCAGCAGGCCACCTGGACCCAGCCCATAATCCTGGA...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAGGPGL*AGSRWP
Trigger: AGGCCACCTGGACCCAGCCCATAATCCTGGACCACC...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTGGGTGGGCCCGAGGTTaGGAGTGTGCAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAGWARG*ECAVLV
Trigger: CACCAGGACTGCACACTCCCAACCTCGGGCCCACCC...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGAGGATTGGTCAGTTCTaGGAGCAGGTCCAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVRIGQF*EQVQSW
Trigger: CCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCT...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCCATCACTGCTGTTTGTaGGGAGGTCAGGTGGGCCCA +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASHHCCL*GGQVGP
Trigger: TGGGCCCACCTGACCTCCCCACAAACAGCAGTGATG...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCATCACTGCTGTTTGTaGGGAGGTCAGGTGGGCCCA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLHHCCL*GGQVGP
Trigger: TGGGCCCACCTGACCTCCCCACAAACAGCAGTGATG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCAGCTGCTGCTTGTGTaGAGTCAGTTGAGGGCCGTG +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAQLLLV*SQLRAV
Trigger: CACGGCCCTCAACTGACTTCACACAAGCAGCAGCTG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTCCCATCGCTCCATACTaGCTTAGCTCCTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAPIAPY*LSSWLC
Trigger: GCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGG...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCCCATCGCTCCATACTaGCTTAGCTCCTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAPIAPY*LSSWLC
Trigger: GCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAAGGAGTCATGGCCATTaGAGAAAGGCCAGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGRSHGH*RKARGA
Trigger: GGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCT...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCGCAGGAAAGGAGACTTaGCTTCCTGGCTTGGGGACA +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASAGKET*LPGLGT
Trigger: TGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGC...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGCAGGAAAGGAGACTTaGCTTCCTGGCTTGGGGACA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLAGKET*LPGLGT
Trigger: TGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTGGATGGTGCCGCTACTaGAGTTCCGCTTTATCTTGG +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAGWCRY*SSALSW
Trigger: CCAAGATAAAGCGGAACTTCAGTAGCGGCACCATCC...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGATCCTGCGGAAGGTaGTGGGGCACTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIGSCGR*WGTSGT
Trigger: TGTCCCTGAAGTGCCCCATCACCTTCCGCAGGATCC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTTCCCCCGCTCACAGTTaGGCTGTAAGTATGACTCCA +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGSPAHS*AVSMTP
Trigger: TGGAGTCATACTTACAGCTCAACTGTGAGCGGGGGA...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTTCCCCCGCTCACAGTTaGGCTGTAAGTATGACTCCA +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPASPAHS*AVSMTP
Trigger: TGGAGTCATACTTACAGCTCAACTGTGAGCGGGGGA...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAAGGCCCCATCATGCCTaGGGCAGGATTGAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPRPHHA*GRIESQ
Trigger: CTGGCTTTCAATCCTGCCTCAGGCATGATGGGGCCT...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGTCCAAAGCTGGTTCTaGGGCCTCCCCTGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYVQSWF*GLPCPS
Trigger: ACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGAC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTAGGTCAAGGCAGAGCTaGCACCTGCCACACCAGGCA +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARRSRQS*HLPHQA
Trigger: TGCCTGGTGTGGCAGGTGGCAGCTCTGCCTTGACCT...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTCATGGCAGCTGCAGCTaGTGCTTGTGTGAAGTCAGT +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGHGSCS*CLCEVS
Trigger: ACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATG...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCATGGCAGCTGCAGCTaGTGCTTGTGTGAAGTCAGT +
Preference number: 4 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPAHGSCS*CLCEVS
Trigger: ACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAAGCAGCCATGGCAGCTaGAGCTGCTGCTTGTGTGAA +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRSSHGS*SCCLCE
Trigger: TTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCT...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCAGCAGCCATGGCAGCTaGAGCTGCTGCTTGTGTGAA +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASSSHGS*SCCLCE
Trigger: TTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCT...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCTTAGCTCCTGGCTCTaGTTCTCCTGCAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVLSSWL*FSCRAA
Trigger: GGCTGCCCTGCAGGAGAAGCAGAGCCAGGAGCTAAG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTATGTCGAGGCAGTGGCTaGCCCTGCGGAGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLCRGSG*PCGGPG
Trigger: CCCTGGGCCTCCGCAGGGGCAGCCACTGCCTCGACA...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVLGSVG*ILASLQ
Trigger: CTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAG...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCTTGAAGCTGGCGCCCTaGCCGTTGAACTGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFLKLAP*PLNCSV
Trigger: CACAGAGCAGTTCAACGGGCAGGGCGCCAGCTTCAA...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGCATTGGGCCCAGGGGTaGCAGGGATGGTGCCGCTAC +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWHWAQG*QGWCRY
Trigger: GTAGCGGCACCATCCCTGGCACCCCTGGGCCCAATG...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGCAATGCCGTCTTGTTaGATACCGGACACCTCCAGG +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLAMPSC*IPDTSR
Trigger: CCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGGGTCCAGGTGGCCTaGTGGTGCCATCTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLWVQVA*WCHLAW
Trigger: CCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCA...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCCGAGGTTGGGAGTGTaGAGTCCTGGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALPRLGV*SPGGPG
Trigger: TCCTGGACCACCAGGACTGCACACTCCCAACCTCGG...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCGAGGTTGGGAGTGTaGAGTCCTGGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVPRLGV*SPGGPG
Trigger: TCCTGGACCACCAGGACTGCACACTCCCAACCTCGG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGAGAGCAGATCATCACTaGTGTTTGTGGGGAGGTCAG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQRADHH*CLWGGQ
Trigger: CTGACCTCCCCACAAACAGCAGTGATGATCTGCTCT...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTGCCGTGCTGCATGTGTaGGGAGCCCCAGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFAVLHV*GAPGLQ
Trigger: CTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGC...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTCAGCCACCGTGGCTGTaGCTGTGGCTGTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFQPPWL*LWLSRW
Trigger: CCACCGCGACAGCCACAGCCACAGCCACGGTGGCTG...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGGGCCAGGAGCATACTaGGCAGTGTTGGCTGCATAC +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVGPGAY*AVLAAY
Trigger: GTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCC...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCGGGCCAGGAGCATACTaGGCAGTGTTGGCTGCATAC +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFGPGAY*AVLAAY
Trigger: GTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCC...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTTGTAATGCAGTCCCGTaGGGCCAGGCGCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSACNAVP*GQAQTG
Trigger: CCCTGTCTGCGCCTGGCCCCACGGGACTGCATTACA...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACGCAGCTCATCACAATaGACACTTGCGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRRSSSQ*TLAEGD
Trigger: GTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGTGCAGCACGAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTCGTGCTGCA...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCCACGGGCTGGGAGCTaGATCCTGCGGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAPRAGS*ILRKVM
Trigger: CATCACCTTCCGCAGGATCCAGCTCCCAGCCCGTGG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCACGGGCTGGGAGCTaGATCCTGCGGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSPRAGS*ILRKVM
Trigger: CATCACCTTCCGCAGGATCCAGCTCCCAGCCCGTGG...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGAGGCTTCACAGGCACTaGCTTCCAGCTGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALRLHRH*LPAARG
Trigger: CCCACGTGCAGCTGGAAGCCAGTGCCTGTGAAGCCT...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGCAGCGCTTCAGCACTaGCCCATCCGGCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYAALQH*PIRLLL
Trigger: AAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACATAGTCGCTGGGGGTTaGGGCCGAAGGGGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYIVAGG*GRRGLQ
Trigger: TTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTAT...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTATAGTCGCTGGGGGTTaGGGCCGAAGGGGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSIVAGG*GRRGLQ
Trigger: TTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTAT...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGAGTTGGAACCCTGGCTaGGATAGTCGCTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQASWNPG*DSRWGL
Trigger: CAACCCCCAGCGACTATCCCAGCCAGGGTTCCAACT...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGAACTCAGCAAGGTTTaGGGTGGTGGGTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGELSKV*GGGCSR
Trigger: TCTGCTACACCCACCACCCCAAACCTTGCTGAGTTC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTGTAGGAGATTGGGGGTaGCCCCTGGGTGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVVGDWG*PLGELS
Trigger: GCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTAC...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTAGGAGATTGGGGGTaGCCCCTGGGTGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIVGDWG*PLGELS
Trigger: GCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTAC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTCCTGCTGGTGCCATCTaGCCTGGGAGGCAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIPAGAI*PGRQGV
Trigger: TACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGG...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGTCCAGGTGGCCTGCTaGTGCCATCTGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLVQVAC*CHLAWE
Trigger: CTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGAC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGTGGGCTGGGTCCAGGTaGCCTGCTGGTGCCATCTGG +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWWAGSR*PAGAIW
Trigger: CCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCA...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTTCCAGGATTATGGGCTaGGTCCAGGTGGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVSRIMG*VQVACW
Trigger: CCAGCAGGCCACCTGGACCCAGCCCATAATCCTGGA...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTTCCAGGATTATGGGCTaGGTCCAGGTGGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARSRIMG*VQVACW
Trigger: CCAGCAGGCCACCTGGACCCAGCCCATAATCCTGGA...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTCCAGGATTATGGGCTaGGTCCAGGTGGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALSRIMG*VQVACW
Trigger: CCAGCAGGCCACCTGGACCCAGCCCATAATCCTGGA...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 72 bp CAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTaGATGGAGGGAGGCTGTGAGGCCCACTGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: QAPHKNHSGAVS*MEGGCEAHWPG
Trigger: CCCAGGCCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 72 bp TGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTaGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGG +
Preference number: 4 (lower is better)
Translates to: CTDRRHNRPAPC*QAQALCQQMQW
Trigger: CCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAA +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQASDPAG*VALCCQ
Trigger: TTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACT...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCCATCGCTCCATACTaGCTTAGCTCCTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVPIAPY*LSSWLC
Trigger: GCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCATTCCTCCCATGCCTaGAGGGTTCATGCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAHSSHA*RVHARG
Trigger: CCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGAGGAGTCATGGCCATTaGAGAAAGGCCAGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGRSHGH*RKARGA
Trigger: GGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCT...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCCCAGGATACACCTCTaGGTAGGCTCTCTTGATCCC +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFPRIHL*VGSLDP
Trigger: GGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGG...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLDTCGG*RVQGAE
Trigger: CTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCGGATGGTGCCGCTACTaGAGTTCCGCTTTATCTTGG +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASGWCRY*SSALSW
Trigger: CCAAGATAAAGCGGAACTTCAGTAGCGGCACCATCC...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCATCCGGCTCCTCCTTaGTGTGTAGGTCAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVHPAPP*CVGQAS
Trigger: TGAAGCCTGACCTACACATCAAGGAGGAGCCGGATG...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCATCCGGCTCCTCCTTaGTGTGTAGGTCAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAHPAPP*CVGQAS
Trigger: TGAAGCCTGACCTACACATCAAGGAGGAGCCGGATG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTAGGCCCCATCATGCCTaGGGCAGGATTGAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVRPHHA*GRIESQ
Trigger: CTGGCTTTCAATCCTGCCTCAGGCATGATGGGGCCT...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGTCCAAAGCTGGTTCTaGGGCCTCCCCTGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLVQSWF*GLPCPS
Trigger: ACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGAC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAACCATCACCGTGTGGTaGAGGGGGCAGGGCGGGTTT +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGTITVW*RGQGGF
Trigger: AAACCCGCCCTGCCCCCTGCACCACACGGTGATGGT...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTTGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTC +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSACLKGS*QGAHWV
Trigger: GACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCA...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRPSFLP*LKGSCQ
Trigger: CTGGCATGAACCCTTCAGGCATGGGAGGAATGATGG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCCTCCTTGCAGATACTaGTGCCCAGGATACACCTCT +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLPPCRY*CPGYTS
Trigger: AGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTCTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCILGSVG*ILASLQ
Trigger: CTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAG...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCGCATTGACGCTGACCTaGACAGATGCTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFALTLT*TDAGQL
Trigger: CAACTGGCCAGCATCTGTGCAGGTCAGCGTCAATGC...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGCAGGGGCTGCCGGGATaGAGGGGAAGGGTTTGGATG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLQGLPG*RGRVWM
Trigger: CATCCAAACCCTTCCCCTGCATCCCGGCAGCCCCTG...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGACCCAGCTGGCTGAGTaGCACTTTGTTGCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVTQLAE*HFVAKA
Trigger: TGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGT...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAACCCAGCTGGCTGAGTaGCACTTTGTTGCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGTQLAE*HFVAKA
Trigger: TGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGT...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGGGTTCCCTAAAACCTaGCTCTGGGTTGCGTTGCCA +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPGFPKT*LWVALP
Trigger: TGGCAACGCAACCCAGAGCCAGGTTTTAGGGAACCC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGTGTTGGCTGCATACTaGCCTCCTTGCAGATACTGC +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLVLAAY*PPCRYC
Trigger: GCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACAC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGGCCAGGAGCATACTaGGCAGTGTTGGCTGCATAC +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALGPGAY*AVLAAY
Trigger: GTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCGCAGCTCATCACAATaGACACTTGCGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVRSSSQ*TLAEGD
Trigger: GTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCG...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGCCACGGGCTGGGAGCTaGATCCTGCGGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLPRAGS*ILRKVM
Trigger: CATCACCTTCCGCAGGATCCAGCTCCCAGCCCGTGG...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGGCTTCACAGGCACTaGCTTCCAGCTGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYRLHRH*LPAARG
Trigger: CCCACGTGCAGCTGGAAGCCAGTGCCTGTGAAGCCT...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGCAGCGCTTCAGCACTaGCCCATCCGGCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGAALQH*PIRLLL
Trigger: AAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGCAGCGCTTCAGCACTaGCCCATCCGGCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLAALQH*PIRLLL
Trigger: AAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTAGTTGGAACCCTGGCTaGGATAGTCGCTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARSWNPG*DSRWGL
Trigger: CAACCCCCAGCGACTATCCCAGCCAGGGTTCCAACT...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGAACTCAGCAAGGTTTaGGGTGGTGGGTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRELSKV*GGGCSR
Trigger: TCTGCTACACCCACCACCCCAAACCTTGCTGAGTTC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAATTGGGGGTGGCCCCTaGGTGAACTCAGCAAGGTTT +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGIGGGP*VNSARF
Trigger: AAACCTTGCTGAGTTCACCCAGGGGCCACCCCCAAT...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGGAGTCAGGAGGCTGCTaGGAATGTCAGACTGGTAGG +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAESGGC*ECQTGR
Trigger: CCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTC...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGTGTGCAGTCCTGGTaGTCCAGGATTATGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFSVQSW*SRIMGW
Trigger: CCAGCCCATAATCCTGGACCACCAGGACTGCACACT...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGATGGGTCCTGTGTTTaGTTGGCCCAGGGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGDGSCV*LAQGLP
Trigger: CGGCAGCCCCTGGGCCAACCAAACACAGGACCCATC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGCATCACTGCTGTTTGTaGGGAGGTCAGGTGGGCCCA +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGHHCCL*GGQVGP
Trigger: TGGGCCCACCTGACCTCCCCACAAACAGCAGTGATG...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCCCATCGCTCCATACTaGCTTAGCTCCTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAPIAPY*LSSWLC
Trigger: GCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTAGGAGTCATGGCCATTaGAGAAAGGCCAGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSARSHGH*RKARGA
Trigger: GGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCT...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGCCCAGGATACACCTCTaGGTAGGCTCTCTTGATCCC +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGPRIHL*VGSLDP
Trigger: GGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGG...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTCCCAGGATACACCTCTaGGTAGGCTCTCTTGATCCC +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIPRIHL*VGSLDP
Trigger: GGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGG...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCCCAGGATACACCTCTaGGTAGGCTCTCTTGATCCC +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVPRIHL*VGSLDP
Trigger: GGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGG...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGCAGGAAAGGAGACTTaGCTTCCTGGCTTGGGGACA +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALAGKET*LPGLGT
Trigger: TGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTAACCTGGCTCTGGGTTaGGTTGCCAACTCCCCACAC +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSANLALG*VANSPH
Trigger: GTGTGGGGAGTTGGCAACGCAACCCAGAGCCAGGTT...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCAGAGCTGCCACCTaGCACACCAGGCATCATGGA +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGGRAAT*HTRHHG
Trigger: TCCATGATGCCTGGTGTGGCAGGTGGCAGCTCTGCC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAAGGTCAAGGCAGAGCTaGCACCTGCCACACCAGGCA +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGRSRQS*HLPHQA
Trigger: TGCCTGGTGTGGCAGGTGGCAGCTCTGCCTTGACCT...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGGGCTGTCGCGGTGGCTaGAGCAGCAGCCATGGCAGC +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEGCRGG*SSSHGS
Trigger: GCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCC...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGCCTCGAGGACCTCCATaGTGCAGAAACTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVPRGPP*CRNWLL
Trigger: TAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGG...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTCCTCGAGGACCTCCATaGTGCAGAAACTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAPRGPP*CRNWLL
Trigger: TAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGG...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGCCTCGAGGACCTCCATaGTGCAGAAACTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAPRGPP*CRNWLL
Trigger: TAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGG...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCACCTCGAGGACCTCCATaGTGCAGAAACTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPPRGPP*CRNWLL
Trigger: TAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGG...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGACCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGPSFLP*LKGSCQ
Trigger: CTGGCATGAACCCTTCAGGCATGGGAGGAATGATGG...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTCCTTGCAGATACTGCTaGCCAGGATACACCTCTGAG +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAPCRYC*PGYTSE
Trigger: CTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGG...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCATACTGGCCTCCTTaGAGATACTGCTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIAYWPP*RYCCPG
Trigger: TCCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACTTGAAGCTGGCGCCCTaGCCGTTGAACTGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYLKLAP*PLNCSV
Trigger: CACAGAGCAGTTCAACGGGCAGGGCGCCAGCTTCAA...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCAATGCCGTCTTGTTaGATACCGGACACCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIAMPSC*IPDTSR
Trigger: CCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTGATGGTGTAGCTGAGTaGCTGGGGTGGGCCCGAGGT +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFDGVAE*LGWARG
Trigger: ACCTCGGGCCCACCCCAGGCACTCAGCTACACCATC...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTCAGGGGCTGCCGGGATaGAGGGGAAGGGTTTGGATG +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFQGLPG*RGRVWM
Trigger: CATCCAAACCCTTCCCCTGCATCCCGGCAGCCCCTG...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCAGAGCAGATCATCACTaGTGTTTGTGGGGAGGTCAG +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASRADHH*CLWGGQ
Trigger: CTGACCTCCCCACAAACAGCAGTGATGATCTGCTCT...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGACCTTCAGCAAACGCCTaGTGTCCCAGGCACTGGCTC +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGPSANA*CPRHWL
Trigger: GAGCCAGTGCCTGGGACAGCAGGCGTTTGCTGAAGG...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102914.10
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTACCCAGCTGGCTGAGTaGCACTTTGTTGCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCITQLAE*HFVAKA
Trigger: TGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGT...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTGGGTTCCCTAAAACCTaGCTCTGGGTTGCGTTGCCA +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVGFPKT*LWVALP
Trigger: TGGCAACGCAACCCAGAGCCAGGTTTTAGGGAACCC...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTGTGTTGGCTGCATACTaGCCTCCTTGCAGATACTGC +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAVLAAY*PPCRYC
Trigger: GCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACAC...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCAAGGAGCTGAGGCCTaGCTTGAGGTCAGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAQGAEA*LEVRQE
Trigger: TTCCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTCGGAGCTGGAAGACATaGTTGCTCACAGCCAGGTTG +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIRSWKT*LLTARL
Trigger: CAACCTGGCTGTGAGCAACCATGTCTTCCAGCTCCG...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASRWEGF*ESSRPH
Trigger: ATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCT...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGGTGGGTGTAGCAGATaGGAAGGATTCTGGGAAAGT +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRGGCSR*EGFWES
Trigger: ACTTTCCCAGAATCCTTCCCATCTGCTACACCCACC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTGAACTCAGCAAGGTTTaGGGTGGTGGGTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAELSKV*GGGCSR
Trigger: TCTGCTACACCCACCACCCCAAACCTTGCTGAGTTC...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGATTGGGGGTGGCCCCTaGGTGAACTCAGCAAGGTTT +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGIGGGP*VNSARF
Trigger: AAACCTTGCTGAGTTCACCCAGGGGCCACCCCCAAT...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTATTGGGGGTGGCCCCTaGGTGAACTCAGCAAGGTTT +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARIGGGP*VNSARF
Trigger: AAACCTTGCTGAGTTCACCCAGGGGCCACCCCCAAT...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGATTGGGGGTGGCCCCTaGGTGAACTCAGCAAGGTTT +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALIGGGP*VNSARF
Trigger: AAACCTTGCTGAGTTCACCCAGGGGCCACCCCCAAT...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLGGPGL*AGSRWP
Trigger: AGGCCACCTGGACCCAGCCCATAATCCTGGACCACC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTAGTGTGCAGTCCTGGTaGTCCAGGATTATGGGCTGG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVSVQSW*SRIMGW
Trigger: CCAGCCCATAATCCTGGACCACCAGGACTGCACACT...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGAGTGTGCAGTCCTGGTaGTCCAGGATTATGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGSVQSW*SRIMGW
Trigger: CCAGCCCATAATCCTGGACCACCAGGACTGCACACT...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGCTGAGTGCCTGGGGTaGGCCCGAGGTTGGGAGTGT +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLAECLG*ARGWEC
Trigger: ACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGC...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGT +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRAVHQD*SVLGAG
Trigger: ACCTGCTCCCAGAACTGACCAATCCTGATGAACTGC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCAGACTCATATGCAAATaGACCATCACCGTGTGGTGC +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASRLICK*TITVWC
Trigger: GCACCACACGGTGATGGTTCATTTGCATATGAGTCT...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGAGGAGTCATGGCCATTaGAGAAAGGCCAGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWRSHGH*RKARGA
Trigger: GGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCT...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTATGGCGCCCTGCCCGTTaGACTGCTCTGTGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLWRPAR*TALWAC
Trigger: ACAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCA...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTGCAGGAAAGGAGACTTaGCTTCCTGGCTTGGGGACA +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAAGKET*LPGLGT
Trigger: TGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGC...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTTCCCCCGCTCACAGTTaGGCTGTAAGTATGACTCCA +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVSPAHS*AVSMTP
Trigger: TGGAGTCATACTTACAGCTCAACTGTGAGCGGGGGA...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTCCCCCGCTCACAGTTaGGCTGTAAGTATGACTCCA +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALSPAHS*AVSMTP
Trigger: TGGAGTCATACTTACAGCTCAACTGTGAGCGGGGGA...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCATCCGGCTCCTCCTTaGTGTGTAGGTCAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAHPAPP*CVGQAS
Trigger: TGAAGCCTGACCTACACATCAAGGAGGAGCCGGATG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGTCCAAAGCTGGTTCTaGGGCCTCCCCTGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLVQSWF*GLPCPS
Trigger: ACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGAC...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGAACCTGGCTCTGGGTTaGGTTGCCAACTCCCCACAC +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLNLALG*VANSPH
Trigger: GTGTGGGGAGTTGGCAACGCAACCCAGAGCCAGGTT...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTAACCTGGCTCTGGGTTaGGTTGCCAACTCCCCACAC +
Preference number: 4 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPNLALG*VANSPH
Trigger: GTGTGGGGAGTTGGCAACGCAACCCAGAGCCAGGTT...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCATGGCAGCTGCAGCTaGTGCTTGTGTGAAGTCAGT +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARHGSCS*CLCEVS
Trigger: ACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGGCTGTCGCGGTGGCTaGAGCAGCAGCCATGGCAGC +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYGCRGG*SSSHGS
Trigger: GCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCCTTGCAGATACTGCTaGCCAGGATACACCTCTGAG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARPCRYC*PGYTSE
Trigger: CTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGCCTCCTTGCAGATACTaGTGCCCAGGATACACCTCT +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGPPCRY*CPGYTS
Trigger: AGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGG...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTGCATACTGGCCTCCTTaGAGATACTGCTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSAYWPP*RYCCPG
Trigger: TCCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGC...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGCATTGACGCTGACCTaGACAGATGCTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYALTLT*TDAGQL
Trigger: CAACTGGCCAGCATCTGTGCAGGTCAGCGTCAATGC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGATGGTGTAGCTGAGTaGCTGGGGTGGGCCCGAGGT +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLDGVAE*LGWARG
Trigger: ACCTCGGGCCCACCCCAGGCACTCAGCTACACCATC...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTACAGGGGCTGCCGGGATaGAGGGGAAGGGTTTGGATG +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLQGLPG*RGRVWM
Trigger: CATCCAAACCCTTCCCCTGCATCCCGGCAGCCCCTG...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGAGAGCAGATCATCACTaGTGTTTGTGGGGAGGTCAG +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVRADHH*CLWGGQ
Trigger: CTGACCTCCCCACAAACAGCAGTGATGATCTGCTCT...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTAAAACCTGGCTCTaGGTTGCGTTGCCAACTCCC +
Preference number: 4 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSPKTWL*VALPTP
Trigger: GGGAGTTGGCAACGCAACCCAGAGCCAGGTTTTAGG...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGTTCCTGCAGGGCCCATaGGGTTCCCTAAAACCTGGC +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWFLQGP*GSLKPG
Trigger: GCCAGGTTTTAGGGAACCCCATGGGCCCTGCAGGAA...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCCATGCTGCAGAAACTaGCTGTTAAAAGACTGCCCA +
Preference number: 4 (lower is better)
Translates to: RLPGSGTGAADQGYRASLPCCRN*LLKDCP
Trigger: TGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACCATGCTGCAGAAACTaGCTGTTAAAAGACTGCCCA +
Preference number: 4 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRPCCRN*LLKDCP
Trigger: TGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGTGTTGGCTGCATACTaGCCTCCTTGCAGATACTGC +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALVLAAY*PPCRYC
Trigger: GCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACAC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTATGTAATGCAGTCCCGTaGGGCCAGGCGCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLCNAVP*GQAQTG
Trigger: CCCTGTCTGCGCCTGGCCCCACGGGACTGCATTACA...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCCTTGACTTCCTGGCTTaGGGACATGTAGGGAACATT +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASLDFLA*GHVGNI
Trigger: AATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAG...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCGCAGCTCATCACAATaGACACTTGCGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSARSSSQ*TLAEGD
Trigger: GTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCGGAGCTGGAAGACATaGTTGCTCACAGCCAGGTTG +
Preference number: 4 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSRSWKT*LLTARL
Trigger: CAACCTGGCTGTGAGCAACCATGTCTTCCAGCTCCG...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCACAGAATCTCGGAGCTaGAAGACATGGTTGCTCACA +
Preference number: 4 (lower is better)
Translates to: AQALELQTKGTEPASAASTESRS*KTWLLT
Trigger: TGTGAGCAACCATGTCTTCCAGCTCCGAGATTCTGT...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTTGCAGCACGAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTCGTGCTGCA...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCCCATCCTCTCCATTaGGCCCAGGGGTGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSPHPLH*AQGCQG
Trigger: TCCCTGGCACCCCTGGGCCCAATGGAGAGGATGGGG...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGCCCCATCCTCTCCATTaGGCCCAGGGGTGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEPHPLH*AQGCQG
Trigger: TCCCTGGCACCCCTGGGCCCAATGGAGAGGATGGGG...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAATAGTCGCTGGGGGTTaGGGCCGAAGGGGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLIVAGG*GRRGLQ
Trigger: TTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTAT...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPRWEGF*ESSRPH
Trigger: ATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCT...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGGTGGGTGTAGCAGATaGGAAGGATTCTGGGAAAGT +
Preference number: 4 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPGGCSR*EGFWES
Trigger: ACTTTCCCAGAATCCTTCCCATCTGCTACACCCACC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCGGTGGGTGTAGCAGATaGGAAGGATTCTGGGAAAGT +
Preference number: 4 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFGGCSR*EGFWES
Trigger: ACTTTCCCAGAATCCTTCCCATCTGCTACACCCACC...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACATTGGGGGTGGCCCCTaGGTGAACTCAGCAAGGTTT +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYIGGGP*VNSARF
Trigger: AAACCTTGCTGAGTTCACCCAGGGGCCACCCCCAAT...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTAGGAGTAGACTTGTCTaGAGTCAGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSARSRLV*SQEAAG
Trigger: CCCAGCAGCCTCCTGACTCCAGACAAGTCTACTCCT...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGGAGTAGACTTGTCTaGAGTCAGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYRSRLV*SQEAAG
Trigger: CCCAGCAGCCTCCTGACTCCAGACAAGTCTACTCCT...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCGTCCAGGTGGCCTGCTaGTGCCATCTGGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSVQVAC*CHLAWE
Trigger: CTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGAC...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTAGGATTGGTCAGTTCTaGGAGCAGGTCCAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIRIGQF*EQVQSW
Trigger: CCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCT...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTAGGATTGGTCAGTTCTaGGAGCAGGTCCAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARRIGQF*EQVQSW
Trigger: CCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCT...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGAGACTCATATGCAAATaGACCATCACCGTGTGGTGC +
Preference number: 4 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQARLICK*TITVWC
Trigger: GCACCACACGGTGATGGTTCATTTGCATATGAGTCT...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAA +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWSDPAG*VALCCQ
Trigger: TTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACT...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGTGGCGCCCTGCCCGTTaGACTGCTCTGTGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEWRPAR*TALWAC
Trigger: ACAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCA...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGGATGGTGCCGCTACTaGAGTTCCGCTTTATCTTGG +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYGWCRY*SSALSW
Trigger: CCAAGATAAAGCGGAACTTCAGTAGCGGCACCATCC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGATCTCCTCGTAGTCTaGGTTCTGAATATAAATCAG +
Preference number: 4 (lower is better)
Translates to: AWGPMERRAASSSSGLAVDLLVV*VLNINQ
Trigger: CTGATTTATATTCAGAACTCAGACTACGAGGAGATC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGATCTCCTCGTAGTCTaGGTTCTGAATATAAATCAG +
Preference number: 4 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQDLLVV*VLNINQ
Trigger: CTGATTTATATTCAGAACTCAGACTACGAGGAGATC...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGCATCCGGCTCCTCCTTaGTGTGTAGGTCAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLHPAPP*CVGQAS
Trigger: TGAAGCCTGACCTACACATCAAGGAGGAGCCGGATG...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACCATGGCAGCTGCAGCTaGTGCTTGTGTGAAGTCAGT +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYHGSCS*CLCEVS
Trigger: ACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATG...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTAGCAGCCATGGCAGCTaGAGCTGCTGCTTGTGTGAA +
Preference number: 4 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPSSHGS*SCCLCE
Trigger: TTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCT...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTGCAGATACTGCTaGCCAGGATACACCTCTGAG +
Preference number: 4 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSPCRYC*PGYTSE
Trigger: CTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGG...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTCCTCCTTGCAGATACTaGTGCCCAGGATACACCTCT +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAPPCRY*CPGYTS
Trigger: AGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGG...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGCATACTGGCCTCCTTaGAGATACTGCTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLAYWPP*RYCCPG
Trigger: TCCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTAGAGCAGATCATCACTaGTGTTTGTGGGGAGGTCAG +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIRADHH*CLWGGQ
Trigger: CTGACCTCCCCACAAACAGCAGTGATGATCTGCTCT...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTAGAGCAGATCATCACTaGTGTTTGTGGGGAGGTCAG +
Preference number: 4 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVRADHH*CLWGGQ
Trigger: CTGACCTCCCCACAAACAGCAGTGATGATCTGCTCT...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACCATACTGGGCAGTGTTaGCTGCATACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYHTGQC*LHTGLL
Trigger: AAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATG...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGACGGAGCTGGAAGACATaGTTGCTCACAGCCAGGTTG +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGRSWKT*LLTARL
Trigger: CAACCTGGCTGTGAGCAACCATGTCTTCCAGCTCCG...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTAGTTGGAACCCTGGCTaGGATAGTCGCTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFSWNPG*DSRWGL
Trigger: CAACCCCCAGCGACTATCCCAGCCAGGGTTCCAACT...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALRWEGF*ESSRPH
Trigger: ATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCT...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGGTGGGTGTAGCAGATaGGAAGGATTCTGGGAAAGT +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGGGCSR*EGFWES
Trigger: ACTTTCCCAGAATCCTTCCCATCTGCTACACCCACC...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGTGGGTGTAGCAGATaGGAAGGATTCTGGGAAAGT +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALGGCSR*EGFWES
Trigger: ACTTTCCCAGAATCCTTCCCATCTGCTACACCCACC...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGAGTCAGGAGGCTGCTaGGAATGTCAGACTGGTAGG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLESGGC*ECQTGR
Trigger: CCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACTGGGCTGGGTCCAGGTaGCCTGCTGGTGCCATCTGG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYWAGSR*PAGAIW
Trigger: CCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCA...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAAGTGTGCAGTCCTGGTaGTCCAGGATTATGGGCTGG +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGSVQSW*SRIMGW
Trigger: CCAGCCCATAATCCTGGACCACCAGGACTGCACACT...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGAGTGTGCAGTCCTGGTaGTCCAGGATTATGGGCTGG +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWSVQSW*SRIMGW
Trigger: CCAGCCCATAATCCTGGACCACCAGGACTGCACACT...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGGATGGGTCCTGTGTTTaGTTGGCCCAGGGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEDGSCV*LAQGLP
Trigger: CGGCAGCCCCTGGGCCAACCAAACACAGGACCCATC...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGAVHQD*SVLGAG
Trigger: ACCTGCTCCCAGAACTGACCAATCCTGATGAACTGC...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIAVHQD*SVLGAG
Trigger: ACCTGCTCCCAGAACTGACCAATCCTGATGAACTGC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTATGCTGTCCCAGGCACTaGCTCTGGGTTGCGTTGCCA +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLCCPRH*LWVALP
Trigger: TGGCAACGCAACCCAGAGCCAGTGCCTGGGACAGCA...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102914.10
CDS-3UTR TCA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGAGACTCATATGCAAATaGACCATCACCGTGTGGTGC +
Preference number: 4 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALRLICK*TITVWC
Trigger: GCACCACACGGTGATGGTTCATTTGCATATGAGTCT...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAAGGAGTCATGGCCATTaGAGAAAGGCCAGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLRSHGH*RKARGA
Trigger: GGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCT...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTGCAGGAAAGGAGACTTaGCTTCCTGGCTTGGGGACA +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFAGKET*LPGLGT
Trigger: TGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGC...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAAGGCCCCATCATGCCTaGGGCAGGATTGAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLRPHHA*GRIESQ
Trigger: CTGGCTTTCAATCCTGCCTCAGGCATGATGGGGCCT...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACACCATCACCGTGTGGTaGAGGGGGCAGGGCGGGTTT +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYTITVW*RGQGGF
Trigger: AAACCCGCCCTGCCCCCTGCACCACACGGTGATGGT...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACCCTTCAGCAAACGCCTaGTGTCCCAGGCACTGCGGG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYPSANA*CPRHCG
Trigger: CCCGCAGTGCCTGGGACAGCAGGCGTTTGCTGAAGG...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTCCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPPSFLP*LKGSCQ
Trigger: CTGGCATGAACCCTTCAGGCATGGGAGGAATGATGG...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGCCTCCTTGCAGATACTaGTGCCCAGGATACACCTCT +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLPPCRY*CPGYTS
Trigger: AGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGG...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTGCATACTGGCCTCCTTaGAGATACTGCTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFAYWPP*RYCCPG
Trigger: TCCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGC...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCAGGTTGGCCCAGGGGCTaGCGGGATGCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPGWPRG*RDAGEG
Trigger: CCCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACC...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGCCATGCTGCAGAAACTaGCTGTTAAAAGACTGCCCA +
Preference number: 4 (lower is better)
Translates to: SSGCVHWEFRENQQAACGPCCRN*LLKDCP
Trigger: TGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGG...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCCCCCTGTCGAGGCAGTaGCTGCCCCTGCGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPPLSRQ*LPLRRP
Trigger: GGGCCTCCGCAGGGGCAGCCACTGCCTCGACAGGGG...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
56% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCTGTCGAGGCAGTaGCTGCCCCTGCGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPPLSRQ*LPLRRP
Trigger: GGGCCTCCGCAGGGGCAGCCACTGCCTCGACAGGGG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGACATACTGGGCAGTGTTaGCTGCATACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGHTGQC*LHTGLL
Trigger: AAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATG...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGCATACTGGGCAGTGTTaGCTGCATACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWHTGQC*LHTGLL
Trigger: AAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATG...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCTTGACTTCCTGGCTTaGGGACATGTAGGGAACATT +
Preference number: 4 (lower is better)
Translates to: RVEGQVQGHESGAEGCARLDFLA*GHVGNI
Trigger: AATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTACAGAATCTCGGAGCTaGAAGACATGGTTGCTCACA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCITESRS*KTWLLT
Trigger: TGTGAGCAACCATGTCTTCCAGCTCCGAGATTCTGT...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGCAGCGCTTCAGCACTaGCCCATCCGGCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYAALQH*PIRLLL
Trigger: AAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSARWEGF*ESSRPH
Trigger: ATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCT...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAAGACTGGTAGGAGATTaGGGGTGGCCCCTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLRLVGD*GWPLGE
Trigger: TTCACCCAGGGGCCACCCCCAATCTCCTACCAGTCT...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGCCTGCTGGTGCCATCTaGCCTGGGAGGCAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEPAGAI*PGRQGV
Trigger: TACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGG...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGATGGGTCCTGTGTTTaGTTGGCCCAGGGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYDGSCV*LAQGLP
Trigger: CGGCAGCCCCTGGGCCAACCAAACACAGGACCCATC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGAGGATTGGTCAGTTCTaGGAGCAGGTCCAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLRIGQF*EQVQSW
Trigger: CCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCT...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAA +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLSDPAG*VALCCQ
Trigger: TTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACT...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGCAGCTGCTGCTTGTGTaGAGTCAGTTGAGGGCCGTG +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEQLLLV*SQLRAV
Trigger: CACGGCCCTCAACTGACTTCACACAAGCAGCAGCTG...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACCATTCCTCCCATGCCTaGAGGGTTCATGCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYHSSHA*RVHARG
Trigger: CCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATG...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCAACCTGGCTCTGGGTTaGGTTGCCAACTCCCCACAC +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSNLALG*VANSPH
Trigger: GTGTGGGGAGTTGGCAACGCAACCCAGAGCCAGGTT...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGGCAGAGCTGCCACCTaGCACACCAGGCATCATGGA +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYGRAAT*HTRHHG
Trigger: TCCATGATGCCTGGTGTGGCAGGTGGCAGCTCTGCC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGGGGAGCCCCAGGCCTaGAGGGCCTCCTGCATACCC +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPGEPQA*RASCIP
Trigger: GGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACTGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTC +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYCLKGS*QGAHWV
Trigger: GACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCA...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGCATACTGGCCTCCTTaGAGATACTGCTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLAYWPP*RYCCPG
Trigger: TCCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGC...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGCTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEELGSVG*ILASLQ
Trigger: CTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAG...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGGGTTCCCTAAAACCTaGCTCTGGGTTGCGTTGCCA +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLGFPKT*LWVALP
Trigger: TGGCAACGCAACCCAGAGCCAGGTTTTAGGGAACCC...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGTTCCTGCAGGGCCCATaGGGTTCCCTAAAACCTGGC +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEFLQGP*GSLKPG
Trigger: GCCAGGTTTTAGGGAACCCCATGGGCCCTGCAGGAA...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTTCATACTGGGCAGTGTTaGCTGCATACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: RPSAQRKDSAKPTKRESFHTGQC*LHTGLL
Trigger: AAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATG...AAAGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTACAGAATCTCGGAGCTaGAAGACATGGTTGCTCACA +
Preference number: 4 (lower is better)
Translates to: SLHLELRVEGGTPKPDSATESRS*KTWLLT
Trigger: TGTGAGCAACCATGTCTTCCAGCTCCGAGATTCTGT...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACTGCAGCACGAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTCGTGCTGCA...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYGGPGL*AGSRWP
Trigger: AGGCCACCTGGACCCAGCCCATAATCCTGGACCACC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGT +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWAVHQD*SVLGAG
Trigger: ACCTGCTCCCAGAACTGACCAATCCTGATGAACTGC...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 72 bp TCAGCCAAGCCCACCAAGAGGGAGTCCTTTAATAGATaGCACAGACAGGAGACACAACAGGCCAGCACCCTG +
Preference number: 4 (lower is better)
Translates to: SAKPTKRESFNR*HRQETQQASTL
Trigger: CAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATCTATTAAAGGACTCCCTCTTGGTGGGCTTGGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAAGACTCATATGCAAATaGACCATCACCGTGTGGTGC +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGRLICK*TITVWC
Trigger: GCACCACACGGTGATGGTTCATTTGCATATGAGTCT...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAA +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEESDPAG*VALCCQ
Trigger: TTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACT...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCCAGGATACACCTCTaGGTAGGCTCTCTTGATCCC +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSPRIHL*VGSLDP
Trigger: GGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGG...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGATCTCCTCGTAGTCTaGGTTCTGAATATAAATCAG +
Preference number: 4 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVDLLVV*VLNINQ
Trigger: CTGATTTATATTCAGAACTCAGACTACGAGGAGATC...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGATCTCCTCGTAGTCTaGGTTCTGAATATAAATCAG +
Preference number: 4 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGDLLVV*VLNINQ
Trigger: CTGATTTATATTCAGAACTCAGACTACGAGGAGATC...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGAGCAGCCATGGCAGCTaGAGCTGCTGCTTGTGTGAA +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEESSHGS*SCCLCE
Trigger: TTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCT...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTACCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLPSFLP*LKGSCQ
Trigger: CTGGCATGAACCCTTCAGGCATGGGAGGAATGATGG...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGGCATTGACGCTGACCTaGACAGATGCTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEALTLT*TDAGQL
Trigger: CAACTGGCCAGCATCTGTGCAGGTCAGCGTCAATGC...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCGCAATGCCGTCTTGTTaGATACCGGACACCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSAMPSC*IPDTSR
Trigger: CCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGC...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCACCCAGCTGGCTGAGTaGCACTTTGTTGCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSTQLAE*HFVAKA
Trigger: TGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGT...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGCCGTGCTGCATGTGTaGGGAGCCCCAGGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPAVLHV*GAPGLQ
Trigger: CTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGC...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTACATACTGGGCAGTGTTaGCTGCATACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLHTGQC*LHTGLL
Trigger: AAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATG...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTCTTGACTTCCTGGCTTaGGGACATGTAGGGAACATT +
Preference number: 4 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPLDFLA*GHVGNI
Trigger: AATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAG...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACCAAGGAGCTGAGGCCTaGCTTGAGGTCAGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYQGAEA*LEVRQE
Trigger: TTCCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTG...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTACAGAATCTCGGAGCTaGAAGACATGGTTGCTCACA +
Preference number: 4 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPTESRS*KTWLLT
Trigger: TGTGAGCAACCATGTCTTCCAGCTCCGAGATTCTGT...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACAGACTGGTAGGAGATTaGGGGTGGCCCCTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYRLVGD*GWPLGE
Trigger: TTCACCCAGGGGCCACCCCCAATCTCCTACCAGTCT...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGAGGAGTAGACTTGTCTaGAGTCAGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEERSRLV*SQEAAG
Trigger: CCCAGCAGCCTCCTGACTCCAGACAAGTCTACTCCT...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGCCTCGAGGACCTCCATaGTGCAGAAACTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEPRGPP*CRNWLL
Trigger: TAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGG...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGCATTGACGCTGACCTaGACAGATGCTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYALTLT*TDAGQL
Trigger: CAACTGGCCAGCATCTGTGCAGGTCAGCGTCAATGC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGGGCAGGGCTCACAGTaGGGCAGCGCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPGQGSQ*GSASAL
Trigger: CAGTGCTGAAGCGCTGCCGCACTGTGAGCCCTGCCC...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCTGGGTCCAGGTGGCCTaGTGGTGCCATCTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPWVQVA*WCHLAW
Trigger: CCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCA...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGCGTCATGGGTGGTGTaGGATTCCCCGGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPASWVV*DSPAVG
Trigger: CCCCACTGCCGGGGAATCCCACACCACCCATGACGC...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCCCCCATCCTCTCCATTaGGCCCAGGGGTGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPPHPLH*AQGCQG
Trigger: TCCCTGGCACCCCTGGGCCCAATGGAGAGGATGGGG...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
52% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGGGTGGGCCCGAGGTTaGGAGTGTGCAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPGWARG*ECAVLV
Trigger: CACCAGGACTGCACACTCCCAACCTCGGGCCCACCC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGCTGAGTGCCTGGGGTaGGCCCGAGGTTGGGAGTGT +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPAECLG*ARGWEC
Trigger: ACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCTTCAGCAAACGCCTaGTGTCCCAGGCACTGCGGG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPPSANA*CPRHCG
Trigger: CCCGCAGTGCCTGGGACAGCAGGCGTTTGCTGAAGG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACCCTTGCAGATACTGCTaGCCAGGATACACCTCTGAG +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYPCRYC*PGYTSE
Trigger: CTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGG...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGAATATAAATCAGGATaGCCAGCATATACTGATCCA +
Preference number: 4 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIEYKSG*PAYTDP
Trigger: TGGATCAGTATATGCTGGGCATCCTGATTTATATTC...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGATGGTGTAGCTGAGTaGCTGGGGTGGGCCCGAGGT +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPDGVAE*LGWARG
Trigger: ACCTCGGGCCCACCCCAGGCACTCAGCTACACCATC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGTGTTGGCTGCATACTaGCCTCCTTGCAGATACTGC +
Preference number: 4 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYVLAAY*PPCRYC
Trigger: GCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACAC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTACTTGACTTCCTGGCTTaGGGACATGTAGGGAACATT +
Preference number: 4 (lower is better)
Translates to: GSSSLENLHRAEPESPPLLDFLA*GHVGNI
Trigger: AATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAG...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGATGGGTCCTGTGTTTaGTTGGCCCAGGGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPDGSCV*LAQGLP
Trigger: CGGCAGCCCCTGGGCCAACCAAACACAGGACCCATC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSAVHQD*SVLGAG
Trigger: ACCTGCTCCCAGAACTGACCAATCCTGATGAACTGC...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCAGACTCATATGCAAATaGACCATCACCGTGTGGTGC +
Preference number: 4 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSRLICK*TITVWC
Trigger: GCACCACACGGTGATGGTTCATTTGCATATGAGTCT...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCACAGCTGCTGCTTGTGTaGAGTCAGTTGAGGGCCGTG +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPQLLLV*SQLRAV
Trigger: CACGGCCCTCAACTGACTTCACACAAGCAGCAGCTG...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGGATCCTGCGGAAGGTaGTGGGGCACTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPGSCGR*WGTSGT
Trigger: TGTCCCTGAAGTGCCCCATCACCTTCCGCAGGATCC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGGCAGAGCTGCCACCTaGCACACCAGGCATCATGGA +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPGRAAT*HTRHHG
Trigger: TCCATGATGCCTGGTGTGGCAGGTGGCAGCTCTGCC...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGGTCAAGGCAGAGCTaGCACCTGCCACACCAGGCA +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPRSRQS*HLPHQA
Trigger: TGCCTGGTGTGGCAGGTGGCAGCTCTGCCTTGACCT...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCATTGAAGCTGGCGCCCTaGCCGTTGAACTGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPLKLAP*PLNCSV
Trigger: CACAGAGCAGTTCAACGGGCAGGGCGCCAGCTTCAA...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGAATATAAATCAGGATaGCCAGCATATACTGATCCA +
Preference number: 4 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYEYKSG*PAYTDP
Trigger: TGGATCAGTATATGCTGGGCATCCTGATTTATATTC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCGAGGTTGGGAGTGTaGAGTCCTGGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPPRLGV*SPGGPG
Trigger: TCCTGGACCACCAGGACTGCACACTCCCAACCTCGG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGGCTTCACAGGCACTaGCTTCCAGCTGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPRLHRH*LPAARG
Trigger: CCCACGTGCAGCTGGAAGCCAGTGCCTGTGAAGCCT...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCAAGTTGGAACCCTGGCTaGGATAGTCGCTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPSWNPG*DSRWGL
Trigger: CAACCCCCAGCGACTATCCCAGCCAGGGTTCCAACT...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCAAGACTGGTAGGAGATTaGGGGTGGCCCCTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPRLVGD*GWPLGE
Trigger: TTCACCCAGGGGCCACCCCCAATCTCCTACCAGTCT...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 72 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTaGTGCTTTATTGCTCCCACCCCAGCCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTL*CFIAPTPASTW
Trigger: CCAGGTGGAGGCTGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
3UTR CAA 72 bp CCTTTCCCAGCTGTTGGCATTTCTACACTATGTACATaGTTGTGCTTTATTGCTCCCACCCCAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: PFPAVGISTLCT*LCFIAPTPAST
Trigger: GGTGGAGGCTGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCATTGAAGCTGGCGCCCTaGCCGTTGAACTGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPLKLAP*PLNCSV
Trigger: CACAGAGCAGTTCAACGGGCAGGGCGCCAGCTTCAA...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCAGCATTGACGCTGACCTaGACAGATGCTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPALTLT*TDAGQL
Trigger: CAACTGGCCAGCATCTGTGCAGGTCAGCGTCAATGC...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGAATATAAATCAGGATaGCCAGCATATACTGATCCA +
Preference number: 4 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLEYKSG*PAYTDP
Trigger: TGGATCAGTATATGCTGGGCATCCTGATTTATATTC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGGAATATAAATCAGGATaGCCAGCATATACTGATCCA +
Preference number: 4 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWEYKSG*PAYTDP
Trigger: TGGATCAGTATATGCTGGGCATCCTGATTTATATTC...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGAATATAAATCAGGATaGCCAGCATATACTGATCCA +
Preference number: 4 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGEYKSG*PAYTDP
Trigger: TGGATCAGTATATGCTGGGCATCCTGATTTATATTC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAAGACTGGTAGGAGATTaGGGGTGGCCCCTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPRLVGD*GWPLGE
Trigger: TTCACCCAGGGGCCACCCCCAATCTCCTACCAGTCT...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCAGAGTCAGGAGGCTGCTaGGAATGTCAGACTGGTAGG +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPESGGC*ECQTGR
Trigger: CCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTC...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGCAATGCCGTCTTGTTaGATACCGGACACCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPAMPSC*IPDTSR
Trigger: CCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGC...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACGCAGCTCATCACAATaGACACTTGCGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPRSSSQ*TLAEGD
Trigger: GTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCCGGAGCTGGAAGACATaGTTGCTCACAGCCAGGTTG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPRSWKT*LLTARL
Trigger: CAACCTGGCTGTGAGCAACCATGTCTTCCAGCTCCG...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACGGAGCTGGAAGACATaGTTGCTCACAGCCAGGTTG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPRSWKT*LLTARL
Trigger: CAACCTGGCTGTGAGCAACCATGTCTTCCAGCTCCG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCAGAACTCAGCAAGGTTTaGGGTGGTGGGTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPELSKV*GGGCSR
Trigger: TCTGCTACACCCACCACCCCAAACCTTGCTGAGTTC...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGGATGGTGCCGCTACTaGAGTTCCGCTTTATCTTGG +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPGWCRY*SSALSW
Trigger: CCAAGATAAAGCGGAACTTCAGTAGCGGCACCATCC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR TCA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGGATCTCCTCGTAGTCTaGGTTCTGAATATAAATCAG +
Preference number: 4 (lower is better)
Translates to: SSLENLHRAEPESPPLEEDLLVV*VLNINQ
Trigger: CTGATTTATATTCAGAACTCAGACTACGAGGAGATC...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCTTGCAGATACTGCTaGCCAGGATACACCTCTGAG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPPCRYC*PGYTSE
Trigger: CTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR GCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCTCCTTGCAGATACTaGTGCCCAGGATACACCTCT +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPPPCRY*CPGYTS
Trigger: AGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAAGGATTGGTCAGTTCTaGGAGCAGGTCCAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPRIGQF*EQVQSW
Trigger: CCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCT...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCACCATGCTGCAGAAACTaGCTGTTAAAAGACTGCCCA +
Preference number: 4 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPPCCRN*LLKDCP
Trigger: TGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGG...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPRWEGF*ESSRPH
Trigger: ATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCT...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CCA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAACAGAATCTCGGAGCTaGAAGACATGGTTGCTCACA +
Preference number: 4 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPTESRS*KTWLLT
Trigger: TGTGAGCAACCATGTCTTCCAGCTCCGAGATTCTGT...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCTGATGCTGCCCCCGTaGAAGCTGGCGCCCTGCCCG +
Preference number: 5 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPALMLPP*KLAPCP
Trigger: CGGGCAGGGCGCCAGCTTCAACGGGGGCAGCATCAG...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACTGATGCTGCCCCCGTaGAAGCTGGCGCCCTGCCCG +
Preference number: 5 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRLMLPP*KLAPCP
Trigger: CGGGCAGGGCGCCAGCTTCAACGGGGGCAGCATCAG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCCTGATGCTGCCCCCGTaGAAGCTGGCGCCCTGCCCG +
Preference number: 5 (lower is better)
Translates to: RLPGSGTGAADQGYRASLLMLPP*KLAPCP
Trigger: CGGGCAGGGCGCCAGCTTCAACGGGGGCAGCATCAG...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 90 bp GTGGGCCCGAGGTTGGGAGTGTGCAGTCCTGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCTGCTGGTGCCATCTGGCCTGGGAGG +
Preference number: 5 (lower is better)
Translates to: VGPRLGVCSPGGPGL*AGSRWPAGAIWPGR
Trigger: CCTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCATAATCCTGGACCACCAGGACTGCACACTCCCAACCTCGGGCCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTCTGATGCTGCCCCCGTaGAAGCTGGCGCCCTGCCCG +
Preference number: 5 (lower is better)
Translates to: EEPLNQIQLGGSARPPKALMLPP*KLAPCP
Trigger: CGGGCAGGGCGCCAGCTTCAACGGGGGCAGCATCAG...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAGGGGTGGGCCCGAGGTaGGGAGTGTGCAGTCCTGGT +
Preference number: 5 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRGVGPR*GVCSPG
Trigger: ACCAGGACTGCACACTCCCAACCTCGGGCCCACCCC...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGGGGTGGGCCCGAGGTaGGGAGTGTGCAGTCCTGGT +
Preference number: 5 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPGVGPR*GVCSPG
Trigger: ACCAGGACTGCACACTCCCAACCTCGGGCCCACCCC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGTGGCTCTGGGTTGCGTaGCCAACTCCCCACACAGTA +
Preference number: 5 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQWLWVA*PTPHTV
Trigger: TACTGTGTGGGGAGTTGGCAACGCAACCCAGAGCCA...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGACTGGCGCCCTGCCCGTaGAACTGCTCTGTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGLAPCP*NCSVGL
Trigger: CAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCAG...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTCTGGCGCCCTGCCCGTaGAACTGCTCTGTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: EEPLNQIQLGGSARPPKALAPCP*NCSVGL
Trigger: CAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCAG...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCTTGCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGAGCTGAGGCCTGGCTaGAGGTCAGGCAGGAAAGGA +
Preference number: 5 (lower is better)
Translates to: ACRPRRFASRCNGLPHLGELRPG*RSGRKG
Trigger: TCCTTTCCTGCCTGACCTCAAGCCAGGCCTCAGCTC...ACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: RLPGSGTGAADQGYRASLGNRRF*RRPCST
Trigger: CGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCC...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGATCATCACTGCTGTTaGTGGGGAGGTCAGGTGGGC +
Preference number: 5 (lower is better)
Translates to: AWGPMERRAASSSSGLAVDHHCC*WGGQVG
Trigger: GCCCACCTGACCTCCCCACAAACAGCAGTGATGATC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGATCATCACTGCTGTTaGTGGGGAGGTCAGGTGGGC +
Preference number: 5 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQDHHCC*WGGQVG
Trigger: GCCCACCTGACCTCCCCACAAACAGCAGTGATGATC...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 90 bp CTCTTGCTAGCACCTCCTTCAGCAAACGCCTGCTGTCCCAGGCACTaGGGGGAGGTCAAGGCAGAGCTGCCACCTGCCACACCAGGCATC +
Preference number: 5 (lower is better)
Translates to: LLLAPPSANACCPRH*GEVKAELPPATPGI
Trigger: GATGCCTGGTGTGGCAGGTGGCAGCTCTGCCTTGACCTCCCCGCAGTGCCTGGGACAGCAGGCGTTTGCTGAAGGAGGTGCTAGCAAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 90 bp GCCAGGGGGCTGCCCAGGGCCAGGAGCATACTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAGATACTGCTGCCCAGGATACACCTC +
Preference number: 5 (lower is better)
Translates to: ARGLPRARSILGSVG*ILASLQILLPRIHL
Trigger: GAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCCTGGGCAGCCCCCTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGTGGCTGAGTGGCACTTaGTTGCCAAGGCACAGACTC +
Preference number: 5 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQWLSGT*LPRHRL
Trigger: GAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCA...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCAGCAGCCAGCGAGCTGAGGCCTGGCTaGAGGTCAGGCAGGAAAGGA +
Preference number: 5 (lower is better)
Translates to: AQALELQTKGTEPASAASELRPG*RSGRKG
Trigger: TCCTTTCCTGCCTGACCTCAAGCCAGGCCTCAGCTC...GCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGGCTTGTGCGAGGTCTaGTTGTCTCCACGCTCAATG +
Preference number: 5 (lower is better)
Translates to: AWGPMERRAASSSSGLAVGLCEV*LSPRSM
Trigger: CATTGAGCGTGGAGACAACAAGACCTCGCACAAGCC...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVGNRRF*RRPCST
Trigger: CGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCC...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTGATCATCACTGCTGTTaGTGGGGAGGTCAGGTGGGC +
Preference number: 5 (lower is better)
Translates to: WSAGLLPVHQGWQWQAPADHHCC*WGGQVG
Trigger: GCCCACCTGACCTCCCCACAAACAGCAGTGATGATC...AGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 90 bp AACATTGCTGCTAGGCGTCATGGGTGGTGTGGGATTCCCCGGCAGTaGGGAGCTGGGGTAACCAGGGATGGAGCGGGAAGGCCCACTCAA +
Preference number: 5 (lower is better)
Translates to: NIAARRHGWCGIPRQ*GAGVTRDGAGRPTQ
Trigger: TTGAGTGGGCCTTCCCGCTCCATCCCTGGTTACCCCAGCTCCCCACTGCCGGGGAATCCCACACCACCCATGACGCCTAGCAGCAATGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCTGGCTCTGGGTTGCGTaGCCAACTCCCCACACAGTA +
Preference number: 5 (lower is better)
Translates to: RLPGSGTGAADQGYRASLWLWVA*PTPHTV
Trigger: TACTGTGTGGGGAGTTGGCAACGCAACCCAGAGCCA...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGAGCTGAGGCCTGGCTaGAGGTCAGGCAGGAAAGGA +
Preference number: 5 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVELRPG*RSGRKG
Trigger: TCCTTTCCTGCCTGACCTCAAGCCAGGCCTCAGCTC...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GATTGCACAGACAGGAGACACAACAGGCCAGCACCCTGCTTGCAGGCCCAGGCGGAGCTGAGGCCTGGCTaGAGGTCAGGCAGGAAAGGA +
Preference number: 5 (lower is better)
Translates to: DCTDRRHNRPAPCLQAQAELRPG*RSGRKG
Trigger: TCCTTTCCTGCCTGACCTCAAGCCAGGCCTCAGCTC...CGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGAGCTGAGGCCTGGCTaGAGGTCAGGCAGGAAAGGA +
Preference number: 5 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPELRPG*RSGRKG
Trigger: TCCTTTCCTGCCTGACCTCAAGCCAGGCCTCAGCTC...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGGCAGTTGTGCGAGGTCTTGTaGTCTCCACGCTCAATGCTG +
Preference number: 5 (lower is better)
Translates to: GAPWSAGLLPVHQGWQWQLCEVL*SPRSML
Trigger: CAGCATTGAGCGTGGAGACAACAAGACCTCGCACAA...CTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: RVEGQVQGHESGAEGCARGNRRF*RRPCST
Trigger: CGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCC...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGGGGTGGGCCCGAGGTaGGGAGTGTGCAGTCCTGGT +
Preference number: 5 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLGVGPR*GVCSPG
Trigger: ACCAGGACTGCACACTCCCAACCTCGGGCCCACCCC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 90 bp TGGGAAGGTCAGGCGCAGCTCATCACAATGGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAGGCCTGGCTTGAGGTCAGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: WEGQAQLITMDTCGG*RVQGAEAWLEVRQE
Trigger: TTCCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCGCCTGACCTTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 90 bp AAAGGCCAGAGGGGCCCATCATTCCTCCCATGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTCCTCGAGGACCTCCATGCTGCAGAA +
Preference number: 5 (lower is better)
Translates to: KGQRGPSFLPCLKGS*QGAHWVLEDLHAAE
Trigger: TTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATGATGGGCCCCTCTGGCCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCCTGGGGCCCCATGGAGCGCAGGGCTGCTTCCAGTTCATCAGGGCTGGCAGTGCTGAGTGGCACTTTGTaGCCAAGGCACAGACTCATA +
Preference number: 5 (lower is better)
Translates to: AWGPMERRAASSSSGLAVLSGTL*PRHRLI
Trigger: TATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAG...CACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGGCCCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCAGGCCCAGGCGCTTTGCCAGCAGATGCAATGGCCTCCCCCACCTGGGTGTGGCTGAGTGGCACTTTGTaGCCAAGGCACAGACTCATA +
Preference number: 5 (lower is better)
Translates to: AGPGALPADAMASPTWVWLSGTL*PRHRLI
Trigger: TATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAG...CCACACCCAGGTGGGGGAGGCCATTGCATCTGCTGGCAAAGCGCCTGGGCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACAGAGCCAGCCTCTGGCTGAGTGGCACTTaGTTGCCAAGGCACAGACTC +
Preference number: 5 (lower is better)
Translates to: RLPGSGTGAADQGYRASLWLSGT*LPRHRL
Trigger: GAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCA...GAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCTGGCTCTGGGTTGCGTaGCCAACTCCCCACACAGTA +
Preference number: 5 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFWLWVA*PTPHTV
Trigger: TACTGTGTGGGGAGTTGGCAACGCAACCCAGAGCCA...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCATGGCTCTGGGTTGCGTaGCCAACTCCCCACACAGTA +
Preference number: 5 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPWLWVA*PTPHTV
Trigger: TACTGTGTGGGGAGTTGGCAACGCAACCCAGAGCCA...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGCTGGCGCCCTGCCCGTaGAACTGCTCTGTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLLAPCP*NCSVGL
Trigger: CAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCAG...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGGCAGGAAAGGAGACTaGACTTCCTGGCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGGRKGD*TSWLGD
Trigger: GTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCC...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCACCATCCGGCTCCTCCTaGATGTGTAGGTCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPPSGSS*MCRSGF
Trigger: GAAGCCTGACCTACACATCAAGGAGGAGCCGGATGG...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 90 bp TCATGGCCATTGAAGAAAGGCCAGAGGGGCCCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAGGGGGCACACTGGGTCCTCGAGGAC +
Preference number: 5 (lower is better)
Translates to: SWPLKKGQRGPSFLP*LKGSCQGAHWVLED
Trigger: GTCCTCGAGGACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATGATGGGCCCCTCTGGCCTTTCTTCAATGGCCATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 90 bp TGGGGAGGTCAGGTGGGCCCAGGTAGGAGAGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGTCCAAAGCTGGTTCTGAGGCCTCCC +
Preference number: 5 (lower is better)
Translates to: WGGQVGPGRRAVHQD*SVLGAGPKLVLRPP
Trigger: GGGAGGCCTCAGAACCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCTGATGAACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 90 bp AACATTGCTGCTAGGCGTCATGGGTGGTGTGGGATTCCCCGGCAGTaGGGAGCTGGGGTAACCAGGGATGGAGCGGGAAGGCTTGTAATG +
Preference number: 5 (lower is better)
Translates to: NIAARRHGWCGIPRQ*GAGVTRDGAGRLVM
Trigger: CATTACAAGCCTTCCCGCTCCATCCCTGGTTACCCCAGCTCCCCACTGCCGGGGAATCCCACACCACCCATGACGCCTAGCAGCAATGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109785.2
CDS-3UTR CAA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCATGGCTGAGTGGCACTTaGTTGCCAAGGCACAGACTC +
Preference number: 5 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPWLSGT*LPRHRL
Trigger: GAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCA...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTGGCTCTGGGTTGCGTaGCCAACTCCCCACACAGTA +
Preference number: 5 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALWLWVA*PTPHTV
Trigger: TACTGTGTGGGGAGTTGGCAACGCAACCCAGAGCCA...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTTGCATACTGGCCTCCTaGCAGATACTGCTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: FIRAGSGRPQLRVCALGVCILAS*QILLPR
Trigger: CCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCA...AACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGCAGGAAAGGAGACTaGACTTCCTGGCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: RVEGQVQGHESGAEGCARGRKGD*TSWLGD
Trigger: GTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCC...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTGGGCTTGTGCGAGGTCTaGTTGTCTCCACGCTCAATG +
Preference number: 5 (lower is better)
Translates to: GWKDKCKAMSLGQRAVHVGLCEV*LSPRSM
Trigger: CATTGAGCGTGGAGACAACAAGACCTCGCACAAGCC...CACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCCATCCGGCTCCTCCTaGATGTGTAGGTCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: RVEGQVQGHESGAEGCARPSGSS*MCRSGF
Trigger: GAAGCCTGACCTACACATCAAGGAGGAGCCGGATGG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGCCATCCGGCTCCTCCTaGATGTGTAGGTCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALPSGSS*MCRSGF
Trigger: GAAGCCTGACCTACACATCAAGGAGGAGCCGGATGG...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCACTGGCTCTGGGTaGCGTTGCCAACTCCCCACA +
Preference number: 5 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGGTGSG*RCQLPT
Trigger: TGTGGGGAGTTGGCAACGCAACCCAGAGCCAGTGCC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102914.10
CDS-3UTR CAA 90 bp GGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGACTGAGTGGCACTTTGTaGCCAAGGCACAGACTCATA +
Preference number: 5 (lower is better)
Translates to: GWQWQAPAQGVCIGSSGRLSGTL*PRHRLI
Trigger: TATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAG...TCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGTGGCTGAGTGGCACTTaGTTGCCAAGGCACAGACTC +
Preference number: 5 (lower is better)
Translates to: FQFIRAGSGRPQLRVCALWLSGT*LPRHRL
Trigger: GAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCA...CAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGCATACTGGGCAGTGTaGGCTGCATACTGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYAYWAV*AAYWPP
Trigger: AGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTGGCAGGAAAGGAGACTaGACTTCCTGGCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSGRKGD*TSWLGD
Trigger: GTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCC...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCTAAGAACAGAAAGGCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCGGGGTGGGCCCGAGGTaGGGAGTGTGCAGTCCTGGT +
Preference number: 5 (lower is better)
Translates to: SKNRKATDPQHKGRTQPSGVGPR*GVCSPG
Trigger: ACCAGGACTGCACACTCCCAACCTCGGGCCCACCCC...GCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGCCTTTCTGTTCTTAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GAGGAACCCCTAAACCAGATTCAGCTGGGTGGGAGCGCCAGGCCCCCTAAGGCTATGCCTGAGGCAGGATaGAAAGCCAGTTCGCTGATG +
Preference number: 5 (lower is better)
Translates to: EEPLNQIQLGGSARPPKAMPEAG*KASSLM
Trigger: CATCAGCGAACTGGCTTTCAATCCTGCCTCAGGCAT...AGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp CAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAATGCCTGAGGCAGGATaGAAAGCCAGTTCGCTGATG +
Preference number: 5 (lower is better)
Translates to: QFIRAGSGRPQLRVCALGMPEAG*KASSLM
Trigger: CATCAGCGAACTGGCTTTCAATCCTGCCTCAGGCAT...TCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAAGCAGTTCATCAGGATaGGTCAGTTCTGGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: GSGRPQLRVCALGVQGEPSSSSG*VSSGSR
Trigger: CCTGCTCCCAGAACTGACCAATCCTGATGAACTGCT...TGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTGGGAGTTCAGCAGTTCATCAGGATaGGTCAGTTCTGGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SSGLAVAGPSSGCVHWEFSSSSG*VSSGSR
Trigger: CCTGCTCCCAGAACTGACCAATCCTGATGAACTGCT...GAACTCCCAATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 90 bp CTGGGTTGCGTTGCCAACTCCCCACACAGTAGTGACCACAGACAGTaGCCCAGCTGGCTGAGTGGCACTTTGTTGCCAAGGCACAGACTC +
Preference number: 5 (lower is better)
Translates to: LGCVANSPHSSDHRQ*PSWLSGTLLPRHRL
Trigger: GAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACTGTCTGTGGTCACTACTGTGTGGGGAGTTGGCAACGCAACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTTGGCTGAGTGGCACTTaGTTGCCAAGGCACAGACTC +
Preference number: 5 (lower is better)
Translates to: SLHLELRVEGGTPKPDSAWLSGT*LPRHRL
Trigger: GAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCA...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTTGCATACTGGCCTCCTaGCAGATACTGCTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPCILAS*QILLPR
Trigger: CCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCA...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGTGCATACTGGCCTCCTaGCAGATACTGCTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWCILAS*QILLPR
Trigger: CCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCA...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGCATACTGGGCAGTGTaGGCTGCATACTGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGAYWAV*AAYWPP
Trigger: AGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGGCATACTGGGCAGTGTaGGCTGCATACTGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLAYWAV*AAYWPP
Trigger: AGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGC...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGGCATACTGGGCAGTGTaGGCTGCATACTGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWAYWAV*AAYWPP
Trigger: AGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGC...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTGGCAGGAAAGGAGACTaGACTTCCTGGCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPGRKGD*TSWLGD
Trigger: GTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCC...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: GSSSLENLHRAEPESPPLGNRRF*RRPCST
Trigger: CGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCC...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCCACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTGTCCCCCGCTCACAGTaGAGCTGTAAGTATGACTCC +
Preference number: 5 (lower is better)
Translates to: ATDPQHKGRTQPSPPRGSVPRSQ*SCKYDS
Trigger: GGAGTCATACTTACAGCTCAACTGTGAGCGGGGGAC...ACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACGTCCCCCGCTCACAGTaGAGCTGTAAGTATGACTCC +
Preference number: 5 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYVPRSQ*SCKYDS
Trigger: GGAGTCATACTTACAGCTCAACTGTGAGCGGGGGAC...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp CTTCCAGTTCATCAGGGCTGGCAGTGGCAGGCCCCAGCTCAGGGTGTGTGCATTATGCCTGAGGCAGGATaGAAAGCCAGTTCGCTGATG +
Preference number: 5 (lower is better)
Translates to: LPVHQGWQWQAPAQGVCIMPEAG*KASSLM
Trigger: CATCAGCGAACTGGCTTTCAATCCTGCCTCAGGCAT...AATGCACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGCTCAGGGTGTGTGCATTGGGAGTTCAGGGAGAACCAGCAGGCAGCCTGTGGGAGCAGTTCATCAGGATaGGTCAGTTCTGGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SSGCVHWEFRENQQAACGSSSSG*VSSGSR
Trigger: CCTGCTCCCAGAACTGACCAATCCTGATGAACTGCT...CCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATGCACACACCCTGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGGATCATCACTGCTGTTaGTGGGGAGGTCAGGTGGGC +
Preference number: 5 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWDHHCC*WGGQVG
Trigger: GCCCACCTGACCTCCCCACAAACAGCAGTGATGATC...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 90 bp GCCTGGCTTGAGGTCAGGCAGGAAAGGAGACTTGACTTCCTGGCTTaGGGACATGTAGGGAACATTGCTGCTAGGCGTCATGGGTGGTGT +
Preference number: 5 (lower is better)
Translates to: AWLEVRQERRLDFLA*GHVGNIAARRHGWC
Trigger: ACACCACCCATGACGCCTAGCAGCAATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCCTGACCTCAAGCCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGGGTGGAAGGACAAGTGCAAGGCCATGAGTCTGGGGCAGAGGGCTGTGCACGTCTGAGTGGCACTTTGTaGCCAAGGCACAGACTCATA +
Preference number: 5 (lower is better)
Translates to: RVEGQVQGHESGAEGCARLSGTL*PRHRLI
Trigger: TATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAG...ACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp ACAGACCCTCAGCACAAAGGAAGGACTCAGCCAAGCCCACCAAGAGGGAGTCCTGGCTTGTGCGAGGTCTaGTTGTCTCCACGCTCAATG +
Preference number: 5 (lower is better)
Translates to: TDPQHKGRTQPSPPRGSPGLCEV*LSPRSM
Trigger: CATTGAGCGTGGAGACAACAAGACCTCGCACAAGCC...AGGACTCCCTCTTGGTGGGCTTGGCTGAGTCCTTCCTTTGTGCTGAGGGTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000012612.11
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGCCTGCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTTGTGCGAGGTCTaGTTGTCTCCACGCTCAATG +
Preference number: 5 (lower is better)
Translates to: GLQAPHKNHSGAVSLMEGGLCEV*LSPRSM
Trigger: CATTGAGCGTGGAGACAACAAGACCTCGCACAAGCC...TCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TGTATGGTTCTGAGGCTGCCAGGCTCAGGCACTGGAGCTGCAGACCAAGGGTACATGCCTGAGGCAGGATaGAAAGCCAGTTCGCTGATG +
Preference number: 5 (lower is better)
Translates to: CMVLRLPGSGTGAADQGYMPEAG*KASSLM
Trigger: CATCAGCGAACTGGCTTTCAATCCTGCCTCAGGCAT...GTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAACCATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGCCTCCACCTGGAGCTCAGGGTGGAGGGAGGAACCCCTAAACCAGATTCAGCTAGCAGTTCATCAGGATaGGTCAGTTCTGGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SLHLELRVEGGTPKPDSASSSSG*VSSGSR
Trigger: CCTGCTCCCAGAACTGACCAATCCTGATGAACTGCT...AGCTGAATCTGGTTTAGGGGTTCCTCCCTCCACCCTGAGCTCCAGGTGGAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 90 bp CTCAGCAAGGTTTGGGGTGGTGGGTGTAGCAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCATGAAGTTGGAACCCTGGCTGGGATA +
Preference number: 5 (lower is better)
Translates to: LSKVWGGGCSRWEGF*ESSRPHEVGTLAGI
Trigger: TATCCCAGCCAGGGTTCCAACTTCATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCTGCTACACCCACCACCCCAAACCTTGCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTGAGGCCCACTGGTTGTGCGAGGTCTTGTaGTCTCCACGCTCAATGCTG +
Preference number: 5 (lower is better)
Translates to: KNHSGAVSLMEGGCEAHWLCEVL*SPRSML
Trigger: CAGCATTGAGCGTGGAGACAACAAGACCTCGCACAA...CCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCAGGCACCTCACAAGAACCATTCTGGAGCAGTGAGCTTGATGGAGGGAGGCTGTTGTGCGAGGTCTTGTaGTCTCCACGCTCAATGCTG +
Preference number: 5 (lower is better)
Translates to: AGTSQEPFWSSELDGGRLLCEVL*SPRSML
Trigger: CAGCATTGAGCGTGGAGACAACAAGACCTCGCACAA...CAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GGGAGCAGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTACCATCCGGCTCCTCCTaGATGTGTAGGTCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: GSSSLENLHRAEPESPPLPSGSS*MCRSGF
Trigger: GAAGCCTGACCTACACATCAAGGAGGAGCCGGATGG...TAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AGCTCACTGGAGAATTTACATAGAGCTGAGCCTGAAAGCCCACCCCTAGAGGAGGGCAGGAAAGGAGACTaGACTTCCTGGCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: SSLENLHRAEPESPPLEEGRKGD*TSWLGD
Trigger: GTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCC...CTCCTCTAGGGGTGGGCTTTCAGGCTCAGCTCTATGTAAATTCTCCAGTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 90 bp CCAACTCCCCACACAGTAGTGACCACAGACAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAAGGCACAGACTCATATGCAAATGAA +
Preference number: 5 (lower is better)
Translates to: PTPHTVVTTDSDPAG*VALCCQGTDSYANE
Trigger: TTCATTTGCATATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACTGTCTGTGGTCACTACTGTGTGGGGAGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACGTCCCCCGCTCACAGTaGAGCTGTAAGTATGACTCC +
Preference number: 5 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYVPRSQ*SCKYDS
Trigger: GGAGTCATACTTACAGCTCAACTGTGAGCGGGGGAC...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACTTGTGCGAGGTCTTGTaGTCTCCACGCTCAATGCTG +
Preference number: 5 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYLCEVL*SPRSML
Trigger: CAGCATTGAGCGTGGAGACAACAAGACCTCGCACAA...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPGNRRF*RRPCST
Trigger: CGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCC...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp AACATGCTGACTGAAATAGCGGTCCCTCCCTTTCCCAGCTGTTGGCATTTCTACATGCCTGAGGCAGGATaGAAAGCCAGTTCGCTGATG +
Preference number: 5 (lower is better)
Translates to: NMLTEIAVPPFPSCWHFYMPEAG*KASSLM
Trigger: CATCAGCGAACTGGCTTTCAATCCTGCCTCAGGCAT...GTAGAAATGCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp GCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACCCCATGCATACTGGCCTCCTaGCAGATACTGCTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: AVGISTLCTLLCFIAPTPCILAS*QILLPR
Trigger: CCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCA...TGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCATGCATACTGGCCTCCTaGCAGATACTGCTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPCILAS*QILLPR
Trigger: CCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCA...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGCATACTGGGCAGTGTaGGCTGCATACTGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPAYWAV*AAYWPP
Trigger: AGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCGTCCCCCGCTCACAGTaGAGCTGTAAGTATGACTCC +
Preference number: 5 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPVPRSQ*SCKYDS
Trigger: GGAGTCATACTTACAGCTCAACTGTGAGCGGGGGAC...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TTCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCTTGTGCGAGGTCTTGTaGTCTCCACGCTCAATGCTG +
Preference number: 5 (lower is better)
Translates to: FPAVGISTLCTLLCFIAPLCEVL*SPRSML
Trigger: CAGCATTGAGCGTGGAGACAACAAGACCTCGCACAA...GGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCAAGCAGTTCATCAGGATaGGTCAGTTCTGGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPSSSSG*VSSGSR
Trigger: CCTGCTCCCAGAACTGACCAATCCTGATGAACTGCT...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS-3UTR CAA 90 bp TCCCAGCTGTTGGCATTTCTACACTATGTACATTGTTGTGCTTTATTGCTCCCACTGAGTGGCACTTTGTaGCCAAGGCACAGACTCATA +
Preference number: 5 (lower is better)
Translates to: SQLLAFLHYVHCCALLLPLSGTL*PRHRLI
Trigger: TATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAG...TGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAATGCCAACAGCTGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GCTAGGCGTCATGGGTGGTGTGGGATTCCCCGGCAGTaGGGAGCTGGGGTAACCAGGGATGGAGCGGGAAGG +
Preference number: 6 (lower is better)
Translates to: ARRHGWCGIPRQ*GAGVTRDGAGR
Trigger: CCTTCCCGCTCCATCCCTGGTTACCCCAGCTCCCCACTGCCGGGGAATCCCACACCACCCATGACGCCTAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp GGGATGCAGGGGAAGGGTTTGGATGGTGTAGCTGAGTaGCTGGGGTGGGCCCGAGGTTGGGAGTGTGCAGTC +
Preference number: 6 (lower is better)
Translates to: GMQGKGLDGVAE*LGWARGWECAV
Trigger: GACTGCACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGCTACACCATCCAAACCCTTCCCCTGCATCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GGGGCTGCCCAGGGCCAGGAGCATACTGGGCAGTGTTaGCTGCATACTGGCCTCCTTGCAGATACTGCTGCC +
Preference number: 6 (lower is better)
Translates to: GAAQGQEHTGQC*LHTGLLADTAA
Trigger: GGCAGCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCCTGGGCAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GGCTGGGTCCAGGTGGCCTGCTGGTGCCATCTGGCCTaGGAGGCAAGGAGTAGACTTGTCTGGAGTCAGGAG +
Preference number: 6 (lower is better)
Translates to: GWVQVACWCHLA*EARSRLVWSQE
Trigger: CTCCTGACTCCAGACAAGTCTACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GGGAAGGGTTTGGATGGTGTAGCTGAGTGCCTGGGGTaGGCCCGAGGTTGGGAGTGTGCAGTCCTGGTGGTC +
Preference number: 6 (lower is better)
Translates to: GKGLDGVAECLG*ARGWECAVLVV
Trigger: GACCACCAGGACTGCACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGCTACACCATCCAAACCCTTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 72 bp GGGGGCTGCCCAGGGCCAGGAGCATACTGGGCAGTGTaGGCTGCATACTGGCCTCCTTGCAGATACTGCTGC +
Preference number: 6 (lower is better)
Translates to: GGCPGPGAYWAV*AAYWPPCRYCC
Trigger: GCAGCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCCTGGGCAGCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 90 bp CTCACAGTGCGGCAGCGCTTCAGCACTGGCCCATCCGGCTCCTCCTaGATGTGTAGGTCAGGCTTCACAGGCACTGGCTTCCAGCTGCAC +
Preference number: 6 (lower is better)
Translates to: LTVRQRFSTGPSGSS*MCRSGFTGTGFQLH
Trigger: GTGCAGCTGGAAGCCAGTGCCTGTGAAGCCTGACCTACACATCAAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGCCGCACTGTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp AGAAAGGCCAGAGGGGCCCATCATTCCTCCCATGCCTaGAGGGTTCATGCCAGGGGGCACACTGGGTCCTCG +
Preference number: 6 (lower is better)
Translates to: RKARGAHHSSHA*RVHARGHTGSS
Trigger: CGAGGACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATGATGGGCCCCTCTGGCCTTTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp AGTGGCTGCCCCTGCGGAGGCCCAGGGTACCCATGCTaGGGCAGTCGCTGTCCTGCATATAAGGGTGTCATG +
Preference number: 6 (lower is better)
Translates to: SGCPCGGPGYPC*GSRCPAYKGVM
Trigger: CATGACACCCTTATATGCAGGACAGCGACTGCCTCAGCATGGGTACCCTGGGCCTCCGCAGGGGCAGCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp CAGGCGCAGCTCATCACAATGGACACTTGCGGAGGGTaGCGGGTGCAAGGAGCTGAGGCCTGGCTTGAGGTC +
Preference number: 6 (lower is better)
Translates to: QAQLITMDTCGG*RVQGAEAWLEV
Trigger: GACCTCAAGCCAGGCCTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTCCATTGTGATGAGCTGCGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp GGCAGCGCTTCAGCACTGGCCCATCCGGCTCCTCCTTaGTGTGTAGGTCAGGCTTCACAGGCACTGGCTTCC +
Preference number: 6 (lower is better)
Translates to: GSASALAHPAPP*CVGQASQALAS
Trigger: GGAAGCCAGTGCCTGTGAAGCCTGACCTACACATCAAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp ATTGGTCAGTTCTGGGAGCAGGTCCAAAGCTGGTTCTaGGGCCTCCCCTGCCCCAGTCATGCTGGGAGGCCC +
Preference number: 6 (lower is better)
Translates to: IGQFWEQVQSWF*GLPCPSHAGRP
Trigger: GGGCCTCCCAGCATGACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGACCTGCTCCCAGAACTGACCAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp AGGGGCCCATCATTCCTCCCATGCCTGAAGGGTTCATaGCAGGGGGCACACTGGGTCCTCGAGGACCTCCAT +
Preference number: 6 (lower is better)
Translates to: RGPSFLPCLKGS*QGAHWVLEDLH
Trigger: ATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATGATGGGCCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp CTGCCCAGGGCCAGGAGCATACTGGGCAGTGTTGGCTaGATACTGGCCTCCTTGCAGATACTGCTGCCCAGG +
Preference number: 6 (lower is better)
Translates to: LPRARSILGSVG*ILASLQILLPR
Trigger: CCTGGGCAGCAGTATCTGCAAGGAGGCCAGTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCCTGGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp TCGCTGATGGGTCCTGTGTTTGGTTGGCCCAGGGGCTaGCGGGATGCAGGGGAAGGGTTTGGATGGTGTAGC +
Preference number: 6 (lower is better)
Translates to: SLMGPVFGWPRG*RDAGEGFGWCS
Trigger: GCTACACCATCCAAACCCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACCAAACACAGGACCCATCAGCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp CTCCCATGCCTGAAGGGTTCATGCCAGGGGGCACACTaGGTCCTCGAGGACCTCCATGCTGCAGAAACTGGC +
Preference number: 6 (lower is better)
Translates to: LPCLKGSCQGAH*VLEDLHAAETG
Trigger: GCCAGTTTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCATGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp AGGTTGGGAGTGTGCAGTCCTGGTGGTCCAGGATTATaGGCTGGGTCCAGGTGGCCTGCTGGTGCCATCTGG +
Preference number: 6 (lower is better)
Translates to: RLGVCSPGGPGL*AGSRWPAGAIW
Trigger: CCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCATAATCCTGGACCACCAGGACTGCACACTCCCAACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 72 bp CGGCAGCGCTTCAGCACTGGCCCATCCGGCTCCTCCTaGATGTGTAGGTCAGGCTTCACAGGCACTGGCTTC +
Preference number: 6 (lower is better)
Translates to: RQRFSTGPSGSS*MCRSGFTGTGF
Trigger: GAAGCCAGTGCCTGTGAAGCCTGACCTACACATCAAGGAGGAGCCGGATGGGCCAGTGCTGAAGCGCTGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp CCAGGGGGCACACTGGGTCCTCGAGGACCTCCATGCTaGAGAAACTGGCTGTTAAAAGACTGCCCAGTCCCC +
Preference number: 6 (lower is better)
Translates to: PGGTLGPRGPPC*RNWLLKDCPVP
Trigger: GGGGACTGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp TTATGGGCTGGGTCCAGGTGGCCTGCTGGTGCCATCTaGCCTGGGAGGCAAGGAGTAGACTTGTCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: LWAGSRWPAGAI*PGRQGVDLSGV
Trigger: GACTCCAGACAAGTCTACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCATAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp AGGATTGAAAGCCAGTTCGCTGATGGGTCCTGTGTTTaGTTGGCCCAGGGGCTGCCGGGATGCAGGGGAAGG +
Preference number: 6 (lower is better)
Translates to: RIESQFADGSCV*LAQGLPGCRGR
Trigger: CCTTCCCCTGCATCCCGGCAGCCCCTGGGCCAACCAAACACAGGACCCATCAGCGAACTGGCTTTCAATCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 72 bp GGATCCCCCAGGGTAGCTCCCTCGGCCATACACGCCTaGCTGTACGTAGCTCTTGCTAGCACCTCCTTCAGC +
Preference number: 6 (lower is better)
Translates to: GSPRVAPSAIHA*LYVALASTSFS
Trigger: GCTGAAGGAGGTGCTAGCAAGAGCTACGTACAGCAAGGCGTGTATGGCCGAGGGAGCTACCCTGGGGGATCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp TTGAAGAAAGGCCAGAGGGGCCCATCATTCCTCCCATaGCTGAAGGGTTCATGCCAGGGGGCACACTGGGTC +
Preference number: 6 (lower is better)
Translates to: LKKGQRGPSFLP*LKGSCQGAHWV
Trigger: GACCCAGTGTGCCCCCTGGCATGAACCCTTCAGGCATGGGAGGAATGATGGGCCCCTCTGGCCTTTCTTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 90 bp CGCTTTATCTTGGTGATGCAGTGTTCAGCTGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACGGAACGGACAGACGGACGGTGCACC +
Preference number: 6 (lower is better)
Translates to: RFILVMQCSAGNRRF*RRPCSTERTDGRCT
Trigger: GGTGCACCGTCCGTCTGTCCGTTCCGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCCAGCTGAACACTGCATCACCAAGATAAAGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp TGTCATGCCTGCTGCCCGGGTAGGAGTCATGGCCATTaGAGAAAGGCCAGAGGGGCCCATCATTCCTCCCAT +
Preference number: 6 (lower is better)
Translates to: CHACCPGRSHGH*RKARGAHHSSH
Trigger: ATGGGAGGAATGATGGGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCTACCCGGGCAGCAGGCATGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp GCCTCCTTGCAGATACTGCTGCCCAGGATACACCTCTaGGTAGGCTCTCTTGATCCCCTGTCGAGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: ASLQILLPRIHL*VGSLDPLSRQW
Trigger: CCACTGCCTCGACAGGGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp GACTCCAGGTCAAAGCACTGTATATGTCGACAGTCGTaGCCACGGGCTGGGAGCTGGATCCTGCGGAAGGTG +
Preference number: 6 (lower is better)
Translates to: DSRSKHCICRQS*PRAGSWILRKV
Trigger: CACCTTCCGCAGGATCCAGCTCCCAGCCCGTGGTCACGACTGTCGACATATACAGTGCTTTGACCTGGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp CAGATGGGAAGGATTCTGGGAAAGTTCCAGGCCCCATaGAGTTGGAACCCTGGCTGGGATAGTCGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: QMGRILGKFQAP*SWNPGWDSRWG
Trigger: CCCCCAGCGACTATCCCAGCCAGGGTTCCAACTTCATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS GCA 72 bp ATGCCAGGGGGCACACTGGGTCCTCGAGGACCTCCATaGTGCAGAAACTGGCTGTTAAAAGACTGCCCAGTC +
Preference number: 6 (lower is better)
Translates to: MPGGTLGPRGPP*CRNWLLKDCPV
Trigger: GACTGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 72 bp TTGGTGATGCAGTGTTCAGCTGGCAATAGGCGCTTCTaGAGGAGGCCCTGCAGCACGGAACGGACAGACGGA +
Preference number: 6 (lower is better)
Translates to: LVMQCSAGNRRF*RRPCSTERTDG
Trigger: TCCGTCTGTCCGTTCCGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCCAGCTGAACACTGCATCACCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp GTTGCCAACTCCCCACACAGTAGTGACCACAGACAGTaGCCCAGCTGGCTGAGTGGCACTTTGTTGCCAAGG +
Preference number: 6 (lower is better)
Translates to: VANSPHSSDHRQ*PSWLSGTLLPR
Trigger: CCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACTGTCTGTGGTCACTACTGTGTGGGGAGTTGGCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp ACACTGGGTCCTCGAGGACCTCCATGCTGCAGAAACTaGCTGTTAAAAGACTGCCCAGTCCCCATCGCTCCA +
Preference number: 6 (lower is better)
Translates to: TLGPRGPPCCRN*LLKDCPVPIAP
Trigger: TGGAGCGATGGGGACTGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp CAGGTGGGCCCAGGTAGGAGAGCAGTTCATCAGGATTaGTCAGTTCTGGGAGCAGGTCCAAAGCTGGTTCTG +
Preference number: 6 (lower is better)
Translates to: QVGPGRRAVHQD*SVLGAGPKLVL
Trigger: CAGAACCAGCTTTGGACCTGCTCCCAGAACTGACCAATCCTGATGAACTGCTCTCCTACCTGGGCCCACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CAA 72 bp GTCATGCTGGGAGGCCCCATCATGCCTGAGGCAGGATaGAAAGCCAGTTCGCTGATGGGTCCTGTGTTTGGT +
Preference number: 6 (lower is better)
Translates to: VMLGGPIMPEAG*KASSLMGPVFG
Trigger: ACCAAACACAGGACCCATCAGCGAACTGGCTTTCAATCCTGCCTCAGGCATGATGGGGCCTCCCAGCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GTTTGGGGTGGTGGGTGTAGCAGATGGGAAGGATTCTaGGAAAGTTCCAGGCCCCATGAAGTTGGAACCCTG +
Preference number: 6 (lower is better)
Translates to: VWGGGCSRWEGF*ESSRPHEVGTL
Trigger: CAGGGTTCCAACTTCATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCTGCTACACCCACCACCCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GAGCAGATCATCACTGCTGTTTGTGGGGAGGTCAGGTaGGCCCAGGTAGGAGAGCAGTTCATCAGGATTGGT +
Preference number: 6 (lower is better)
Translates to: EQIITAVCGEVR*AQVGEQFIRIG
Trigger: ACCAATCCTGATGAACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCACAAACAGCAGTGATGATCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp TCTCGAAGAGTGAGAGCAGATCATCACTGCTGTTTGTaGGGAGGTCAGGTGGGCCCAGGTAGGAGAGCAGTT +
Preference number: 6 (lower is better)
Translates to: SRRVRADHHCCL*GGQVGPGRRAV
Trigger: AACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCACAAACAGCAGTGATGATCTGCTCTCACTCTTCGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS CCA 72 bp GAGGTCAGGCAGGAAAGGAGACTTGACTTCCTGGCTTaGGGACATGTAGGGAACATTGCTGCTAGGCGTCAT +
Preference number: 6 (lower is better)
Translates to: EVRQERRLDFLA*GHVGNIAARRH
Trigger: ATGACGCCTAGCAGCAATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCTGCCTGACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8
CDS TCA 72 bp CACACAGTAGTGACCACAGACAGTGACCCAGCTGGCTaGGTGGCACTTTGTTGCCAAGGCACAGACTCATAT +
Preference number: 6 (lower is better)
Translates to: HTVVTTDSDPAG*VALCCQGTDSY
Trigger: ATATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACTGTCTGTGGTCACTACTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000012612.11
ENSMUST00000102914.10
ENSMUST00000109785.2
ENSMUST00000109786.8
ENSMUST00000109787.8