RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZMIZ1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000007817

Ensembl transcript IDs: ENSMUST00000007961.15, ENSMUST00000162645.8

Found 495 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGCTCTGCTCAGCTCTCAGCCTGAGGTCCTGGTGTGGGAGGCCTaGGCATGGGCTCCTGGGAGGAATAGGATGTGGGACAGATGGGGT +
Preference number: 1 (lower is better)
Translates to: CALLSSQPEVLVWEA*AWAPGRNRMWDRWG
Trigger: ACCCCATCTGTCCCACATCCTATTCCTCCCAGGAGCCCATGCTCAGGCCTCCCACACCAGGACCTCAGGCTGAGAGCTGAGCAGAGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 90 bp TGTGGTGCACACACTCTCTGCTCCCCGCAAGGCATGGCCCTGGTCTaGGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGG +
Preference number: 1 (lower is better)
Translates to: CGAHTLCSPQGMALV*VKEPSSALSWLWGR
Trigger: CCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCAGGGCCATGCCTTGCGGGGAGCAGAGAGTGTGTGCACCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 90 bp GTCAGCACACATGGAGGGACCTACAGTCGCCATTGGCATGTCTCTTaGTGGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCC +
Preference number: 1 (lower is better)
Translates to: VSTHGGTYSRHWHVS*WAWIPSAWVCLPGA
Trigger: GGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACATGCCAATGGCGACTGTAGGTCCCTCCATGTGTGCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp TGCAAACTGTCACCACTCCTCCAAGGCTTGTCCACTACCCTGGCCTaGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTGAAG +
Preference number: 1 (lower is better)
Translates to: CKLSPLLQGLSTTLA*GPEHRLLSGSSHLK
Trigger: CTTCAGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAGGAGTGGTGACAGTTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp TTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCATGGCCCTaGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGG +
Preference number: 1 (lower is better)
Translates to: FGVVHTLSAPRKAWP*SELRSPPLHCLGSG
Trigger: CCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCAGGGCCATGCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 90 bp GCTCTGGTGCACCCAGCAAAGGTCTGGGCTGGAGACAGGCAGCTTTaGGCAGAGAACCTGCTGGACCAGACTGAGAGACTTGGAGATCCA +
Preference number: 1 (lower is better)
Translates to: ALVHPAKVWAGDRQL*AENLLDQTERLGDP
Trigger: TGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAAGCTGCCTGTCTCCAGCCCAGACCTTTGCTGGGTGCACCAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 90 bp GACTCTAAGCTGGATGGAGTGAAAAAGCAGAGGAGGGCCAGAGGCTaGACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGA +
Preference number: 1 (lower is better)
Translates to: DSKLDGVKKQRRARG*TCWVSRSVERALDG
Trigger: TCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTGCAGCCTCTGGCCCTCCTCTGCTTTTTCACTCCATCCAGCTTAGAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 90 bp GGCTGGAGACAGGCAGCTTTGAGCAGAGAACCTGCTGGACCAGACTaGGAGACTTGGAGATCCATGAAGGCCCTGCTGTGGAGTCGTTTC +
Preference number: 1 (lower is better)
Translates to: GWRQAALSREPAGPD*ETWRSMKALLWSRF
Trigger: GAAACGACTCCACAGCAGGGCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAAGCTGCCTGTCTCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 90 bp CAGCAAAGGTCTGGGCTGGAGACAGGCAGCTTTGAGCAGAGAACCTaGTGGACCAGACTGAGAGACTTGGAGATCCATGAAGGCCCTGCT +
Preference number: 1 (lower is better)
Translates to: QQRSGLETGSFEQRT*WTRLRDLEIHEGPA
Trigger: AGCAGGGCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAAGCTGCCTGTCTCCAGCCCAGACCTTTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp GAACTTTGGGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATaGAGGGACCTACAGTCGCCATTGGCATGTCTCTTGCTGGGCCTG +
Preference number: 1 (lower is better)
Translates to: ELWDTGRSVVWSQHT*RDLQSPLACLLLGL
Trigger: CAGGCCCAGCAAGAGACATGCCAATGGCGACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp CAAAGGTCTGGGCTGGAGACAGGCAGCTTTGAGCAGAGAACCTGCTaGACCAGACTGAGAGACTTGGAGATCCATGAAGGCCCTGCTGTG +
Preference number: 1 (lower is better)
Translates to: QRSGLETGSFEQRTC*TRLRDLEIHEGPAV
Trigger: CACAGCAGGGCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAAGCTGCCTGTCTCCAGCCCAGACCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp TGTCCCTACCAGCTGACTGAGAGTGGTTCTCAACAGTGGGTTGCCTaGTCTCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCA +
Preference number: 1 (lower is better)
Translates to: CPYQLTESGSQQWVA*SLNSSTAASSAPLS
Trigger: TGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGAGACCAGGCAACCCACTGTTGAGAACCACTCTCAGTCAGCTGGTAGGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 90 bp ATACAGGGAGTGACAGGCCATAAATGCCACAAAATGCCTGCCTGCTaGGATGCTCTGGTGCACCCAGCAAAGGTCTGGGCTGGAGACAGG +
Preference number: 1 (lower is better)
Translates to: IQGVTGHKCHKMPAC*DALVHPAKVWAGDR
Trigger: CCTGTCTCCAGCCCAGACCTTTGCTGGGTGCACCAGAGCATCTCAGCAGGCAGGCATTTTGTGGCATTTATGGCCTGTCACTCCCTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 90 bp TTTCTGTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTaGAAACTGTCACCACTCCTCCAAGGCTTGTCCACTACCCTGGCC +
Preference number: 1 (lower is better)
Translates to: FLWCVCVCVRVLPHC*KLSPLLQGLSTTLA
Trigger: GGCCAGGGTAGTGGACAAGCCTTGGAGGAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCACAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 90 bp TCTATTTCTCATTTACATATGTACACACGGCCCTTGAGTCGCTGCTaGTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGG +
Preference number: 1 (lower is better)
Translates to: SISHLHMYTRPLSRC*SLPRLDWSGPRAHG
Trigger: CCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGAAATAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 90 bp GGCCTTGGGTGGCAGCATCGGAGAAGGGAGCAAAGAATTTACAGATaGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCAC +
Preference number: 1 (lower is better)
Translates to: GLGWQHRRREQRIYR*DSCERTTWHHHRHH
Trigger: GTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATGCTGCCACCCAAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp TGGATCGGCTCCAACATTTCTCTGGAAGGAGACATTTCCGGAGTGTaGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTG +
Preference number: 1 (lower is better)
Translates to: WIGSNISLEGDISGV*ASGSVVNLLVGTCL
Trigger: CAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATGTTGGAGCCGATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR GCA 90 bp GCTTTTCTGTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTaGTGCAAACTGTCACCACTCCTCCAAGGCTTGTCCACTACCCTG +
Preference number: 1 (lower is better)
Translates to: AFLWCVCVCVRVLPH*CKLSPLLQGLSTTL
Trigger: CAGGGTAGTGGACAAGCCTTGGAGGAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCACAGAAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 90 bp AGGCATGGCTCCAGCCCCCGATGTCTTTGTAGCTCTCTCAAACCCTaGATCGGCTCCAACATTTCTCTGGAAGGAGACATTTCCGGAGTG +
Preference number: 1 (lower is better)
Translates to: RHGSSPRCLCSSLKP*IGSNISLEGDISGV
Trigger: CACTCCGGAAATGTCTCCTTCCAGAGAAATGTTGGAGCCGATCCAGGGTTTGAGAGAGCTACAAAGACATCGGGGGCTGGAGCCATGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR GCA 90 bp ATGTCTATTTCTCATTTACATATGTACACACGGCCCTTGAGTCGCTaGTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCAT +
Preference number: 1 (lower is better)
Translates to: MSISHLHMYTRPLSR*CSLPRLDWSGPRAH
Trigger: ATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGAAATAGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 90 bp CTGGGCCAAGAGGCGGGGATAAGGTTTAAAAACATGGAAGAACTTTaGGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGG +
Preference number: 1 (lower is better)
Translates to: LGQEAGIRFKNMEEL*DTGRSVVWSQHTWR
Trigger: CCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTCTTCCATGTTTTTAAACCTTATCCCCGCCTCTTGGCCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 90 bp ACAGTGGGTTGCCTGGTCTCTCAACTCGAGCACAGCCGCCTCTTCTaGTCCTCTCTCATCTGTACAAATAGCCCTGGTTGGTTTTTGTTT +
Preference number: 1 (lower is better)
Translates to: TVGCLVSQLEHSRLF*SSLICTNSPGWFLF
Trigger: AAACAAAAACCAACCAGGGCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGAGACCAGGCAACCCACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 90 bp GTACGTGCCTATGGGTGGGTTGCTCGTTGTGGTAAAGTGGCTTGCTaGGACCTCATTTCGGAGGTTACTATGGCTCCAAGTTGTTGTAAG +
Preference number: 1 (lower is better)
Translates to: VRAYGWVARCGKVAC*DLISEVTMAPSCCK
Trigger: CTTACAACAACTTGGAGCCATAGTAACCTCCGAAATGAGGTCTCAGCAAGCCACTTTACCACAACGAGCAACCCACCCATAGGCACGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 90 bp TTGTTGACATGTCTATTTCTCATTTACATATGTACACACGGCCCTTaGGTCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGA +
Preference number: 1 (lower is better)
Translates to: LLTCLFLIYICTHGP*VAAALCLVWIGQAR
Trigger: TCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGAAATAGACATGTCAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 90 bp TTTAAAAACATGGAAGAACTTTGGGACACTGGAAGGTCGGTTGTCTaGAGTCAGCACACATGGAGGGACCTACAGTCGCCATTGGCATGT +
Preference number: 1 (lower is better)
Translates to: FKNMEELWDTGRSVV*SQHTWRDLQSPLAC
Trigger: ACATGCCAATGGCGACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTCTTCCATGTTTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGTCCACTACCCTGGCCTaGGGGCCGGAGCACAGGCTT +
Preference number: 2 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGSTTLA*GPEHRL
Trigger: AAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGA...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGAACGGAGGGCTCCCTTTaGTGTGGTGCACACACTCTC +
Preference number: 2 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGTEGSL*CGAHTL
Trigger: GAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGT...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCTGGTGTGGGAGGCCTaGGCATGGGCTCCTGGGAGG +
Preference number: 2 (lower is better)
Translates to: HLLGEQECGASSGWREKYLVWEA*AWAPGR
Trigger: CCTCCCAGGAGCCCATGCTCAGGCCTCCCACACCAG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTCTGGTGTGGGAGGCCTaGGCATGGGCTCCTGGGAGG +
Preference number: 2 (lower is better)
Translates to: GHLKAGIGLGQSCKALAALVWEA*AWAPGR
Trigger: CCTCCCAGGAGCCCATGCTCAGGCCTCCCACACCAG...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGCGGGTTCCAGTCATCTaGAGGAGGCTCTGGGCCAAG +
Preference number: 2 (lower is better)
Translates to: KAGIGLGQSCKALAASVGRVPVI*RRLWAK
Trigger: CTTGGCCCAGAGCCTCCTTCAGATGACTGGAACCCG...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCCTGCCTAGTGTGCTCTaGTCAGCTCTCAGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGLPSVL*SALSLR
Trigger: CCTCAGGCTGAGAGCTGAGCAGAGCACACTAGGCAG...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTCAGAGTGGGGAGGGATaGCCCCAGTGGAGAGTGGCC +
Preference number: 2 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPQSGEG*PQWRVA
Trigger: GGCCACTCTCCACTGGGGCCATCCCTCCCCACTCTG...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGTCTCTTGCTGGGCCTaGATTCCCTCAGCTTGGGTT +
Preference number: 2 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSVSCWA*IPSAWV
Trigger: AACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGAC...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGGCCCCTACAGCTGTCTaGGGAAAGGAGAACCCAGAG +
Preference number: 2 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGAPTAV*GKENPE
Trigger: CTCTGGGTTCTCCTTTCCCCAGACAGCTGTAGGGGC...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGCTCAGCTCTCAGCCTaGGGTCCTGGTGTGGGAGGC +
Preference number: 2 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWAQLSA*GPGVGG
Trigger: GCCTCCCACACCAGGACCTCAGGCTGAGAGCTGAGC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCTCTGGGGAAGGCCCTaGCCTGTTTCCTGCCAGTCC +
Preference number: 2 (lower is better)
Translates to: HLLGEQECGASSGWREKYLWGRP*PVSCQS
Trigger: GGACTGGCAGGAAACAGGTCAGGGCCTTCCCCAGAG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGAGACTTGGAGATCCATaGAGGCCCTGCTGTGGAGTC +
Preference number: 2 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGRLGDP*RPCCGV
Trigger: GACTCCACAGCAGGGCCTTCATGGATCTCCAAGTCT...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTCAGAGTGGGGAGGGATaGCCCCAGTGGAGAGTGGCC +
Preference number: 2 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAQSGEG*PQWRVA
Trigger: GGCCACTCTCCACTGGGGCCATCCCTCCCCACTCTG...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCGGGAGGAATAGGATGTaGGACAGATGGGGTAGGAGG +
Preference number: 2 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGGRNRM*DRWGRR
Trigger: CCTCCTACCCCATCTGTCCCACATCCTATTCCTCCC...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGACGGAGGGCTCCCTTTaGTGTGGTGCACACACTCTC +
Preference number: 2 (lower is better)
Translates to: KAGIGLGQSCKALAASVGTEGSL*CGAHTL
Trigger: GAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGT...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCCCTGGCTGCTTCTGTaGGGCTCTGGCTGGCATCGT +
Preference number: 2 (lower is better)
Translates to: HLLGEQECGASSGWREKYPWLLL*GSGWHR
Trigger: ACGATGCCAGCCAGAGCCCCACAGAAGCAGCCAGGG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACGGCTTGGGGCAAAGCTaGAAGGCCCTGGCTGCTTCT +
Preference number: 2 (lower is better)
Translates to: HLLGEQECGASSGWREKYGLGQS*KALAAS
Trigger: AGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCC...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAACTCAGCCTGAGGTCCTaGTGTGGGAGGCCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGELSLRS*CGRPEH
Trigger: ATGCTCAGGCCTCCCACACCAGGACCTCAGGCTGAG...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGGTCTCTTGCTGGGCCTaGATTCCCTCAGCTTGGGTT +
Preference number: 2 (lower is better)
Translates to: KAGIGLGQSCKALAASVGVSCWA*IPSAWV
Trigger: AACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGAC...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCAGTCCCTACAAGGTGTaGCACTCTCTCTCAGACACG +
Preference number: 2 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGSPYKV*HSLSDT
Trigger: CGTGTCTGAGAGAGAGTGCCACACCTTGTAGGGACT...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGAGCTCCAACATTTCTCTaGAAGGAGACATTTCCGGAG +
Preference number: 2 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGAPTFL*KETFPE
Trigger: CTCCGGAAATGTCTCCTTCCAGAGAAATGTTGGAGC...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGCTGCACTTGCTGGGTaGGCAGGAGTGTGGAGCGAG +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITAALAG*AGVWSE
Trigger: CTCGCTCCACACTCCTGCTCACCCAGCAAGTGCAGC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCCTGGGGGCCTATGCTaGTTCCCTACCATGTGCCCC +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITPGGLC*FPTMCP
Trigger: GGGGCACATGGTAGGGAAGCAGCATAGGCCCCCAGG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCACCCAGCAAAGGTCTaGGCTGGAGACAGGCAGCTT +
Preference number: 2 (lower is better)
Translates to: HLLGEQECGASSGWREKYHPAKV*AGDRQL
Trigger: AAGCTGCCTGTCTCCAGCCCAGACCTTTGCTGGGTG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 90 bp CCATTGGCATGTCTCTTGCTGGGCCTGGATTCCCTCAGCTTGGGTTaGTCTTCCAGGGGCCGTCTTCAGGCTTGCTCTAGGCATAGATCC +
Preference number: 2 (lower is better)
Translates to: PLACLLLGLDSLSLG*SSRGRLQACSRHRS
Trigger: GGATCTATGCCTAGAGCAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACATGCCAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGCTCAGCTCTCAGCCTaGGGTCCTGGTGTGGGAGGC +
Preference number: 2 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGAQLSA*GPGVGG
Trigger: GCCTCCCACACCAGGACCTCAGGCTGAGAGCTGAGC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGGAGAAATACAGGGAGTaGCAGGCCATAAATGCCACA +
Preference number: 2 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGEKYRE*QAINAT
Trigger: TGTGGCATTTATGGCCTGTCACTCCCTGTATTTCTC...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTCTGCCTAGTGTGCTCTaGTCAGCTCTCAGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: GHLKAGIGLGQSCKALAALPSVL*SALSLR
Trigger: CCTCAGGCTGAGAGCTGAGCAGAGCACACTAGGCAG...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGGCTTGGGGCAAAGCTaGAAGGCCCTGGCTGCTTCT +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITGLGQS*KALAAS
Trigger: AGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGCGCAAGGCATGGCCCTaGTCTGAGTTAAGGAGCCCT +
Preference number: 2 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWRKAWP*SELRSP
Trigger: AGGGCTCCTTAACTCAGACCAGGGCCATGCCTTGCG...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGACTCTGGGGAAGGCCCTaGCCTGTTTCCTGCCAGTCC +
Preference number: 2 (lower is better)
Translates to: QTCSSLGFRASVREKVLGLWGRP*PVSCQS
Trigger: GGACTGGCAGGAAACAGGTCAGGGCCTTCCCCAGAG...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGCTGCACTTGCTGGGTaGGCAGGAGTGTGGAGCGAG +
Preference number: 2 (lower is better)
Translates to: HRRREQRIYRWDSCERTTAALAG*AGVWSE
Trigger: CTCGCTCCACACTCCTGCTCACCCAGCAAGTGCAGC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAACACAAAGCAGGCGAGTaGCAAGCCAGCAGGGGACTC +
Preference number: 2 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGEHKAGE*QASRGL
Trigger: GAGTCCCCTGCTGGCTTGTCACTCGCCTGCTTTGTG...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTCATTGGCATGTCTCTTaGTGGGCCTGGATTCCCTCA +
Preference number: 2 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPHWHVS*WAWIPS
Trigger: TGAGGGAATCCAGGCCCAGCAAGAGACATGCCAATG...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTCTGCAAGGCCCTGGCTaGTTCTGTGGGGCTCTGGCT +
Preference number: 2 (lower is better)
Translates to: CPDTMFLSFRAPSSELPALQGPG*FCGALA
Trigger: AGCCAGAGCCCCACAGAAGCAGCCAGGGCCTTGCAG...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCAAAGCTGCAAGGCCCTaGCTGCTTCTGTGGGGCTCT +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITKAARP*LLLWGS
Trigger: AGAGCCCCACAGAAGCAGCCAGGGCCTTGCAGCTTT...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAAGGAGAAGGCCTTGGGTaGCAGCATCGGAGAAGGGAG +
Preference number: 2 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGEGEGLG*QHRRRE
Trigger: CTCCCTTCTCCGATGCTGCCACCCAAGGCCTTCTCC...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGACTGGAGACCCACATaGCTTTCCCTGCCTAGTGTG +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITDWRPT*LSLPSV
Trigger: CACACTAGGCAGGGAAAGCCATGTGGGTCTCCAGTC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCTCAGGCAAACAGGACTaGAGACCCACATGGCTTTCC +
Preference number: 2 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTSGKQD*RPTWLS
Trigger: GGAAAGCCATGTGGGTCTCCAGTCCTGTTTGCCTGA...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCAGGCAAACAGGACTaGAGACCCACATGGCTTTCC +
Preference number: 2 (lower is better)
Translates to: GHLKAGIGLGQSCKALAASGKQD*RPTWLS
Trigger: GGAAAGCCATGTGGGTCTCCAGTCCTGTTTGCCTGA...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCTGGATTCCCTCAGCTTaGGTTTGTCTTCCAGGGGCC +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITWIPSA*VCLPGA
Trigger: GGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCA...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCTGGATTCCCTCAGCTTaGGTTTGTCTTCCAGGGGCC +
Preference number: 2 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLWIPSA*VCLPGA
Trigger: GGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCA...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACAGAACTTTGGGACACTaGAAGGTCGGTTGTCTGGAG +
Preference number: 2 (lower is better)
Translates to: HLLGEQECGASSGWREKYRTLGH*KVGCLE
Trigger: CTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTCT...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGCTCCCCGCAAGGCATaGCCCTGGTCTGAGTTAAGG +
Preference number: 2 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGAPRKA*PWSELR
Trigger: CCTTAACTCAGACCAGGGCCATGCCTTGCGGGGAGC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGAGCTCCCCGCAAGGCATaGCCCTGGTCTGAGTTAAGG +
Preference number: 2 (lower is better)
Translates to: QTCSSLGFRASVREKVLGAPRKA*PWSELR
Trigger: CCTTAACTCAGACCAGGGCCATGCCTTGCGGGGAGC...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGGGAAGTGGGTCCCATaGAATAGTCTCAGAGAAGGA +
Preference number: 2 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEGKWVP*NSLREG
Trigger: TCCTTCTCTGAGACTATTCCATGGGACCCACTTCCC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAATTGTCCTTGTTCTGCTaGGAGAGTGTTTACAGGGCA +
Preference number: 2 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGELSLFC*ESVYRA
Trigger: TGCCCTGTAAACACTCTCTCAGCAGAACAAGGACAA...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR TCA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGAGAAGCAGGAACTTGTaGGAAAGGCATTTGTCAGTC +
Preference number: 2 (lower is better)
Translates to: TCLGGSLRKSASGVASGVRSRNL*ERHLSV
Trigger: GACTGACAAATGCCTTTCTCACAAGTTCCTGCTTCT...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCGTGTCCTTCCTCACTaGTGCAAACTGTCACCACTC +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITRVLPH*CKLSPL
Trigger: GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGGTTGTGCTTTTCTGTaGTGTGTGTGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEGCAFL*CVCVCV
Trigger: CACACACACACACACACACCACAGAAAAGCACAACC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGAACCCAGAGGGAAGTaGGTCCCATGGAATAGTCTC +
Preference number: 2 (lower is better)
Translates to: FTDGTHVSGQPGITTGITEPRGK*VPWNSL
Trigger: GAGACTATTCCATGGGACCCACTTCCCTCTGGGTTC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGAGGGAGGAATAGGATGTaGGACAGATGGGGTAGGAGG +
Preference number: 2 (lower is better)
Translates to: QTCSSLGFRASVREKVLGGRNRM*DRWGRR
Trigger: CCTCCTACCCCATCTGTCCCACATCCTATTCCTCCC...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGGAAGGTCGGTTGTCTaGAGTCAGCACACATGGAGG +
Preference number: 2 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGGRSVV*SQHTWR
Trigger: CCTCCATGTGTGCTGACTCCAGACAACCGACCTTCC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGGAAGGTCGGTTGTCTaGAGTCAGCACACATGGAGG +
Preference number: 2 (lower is better)
Translates to: HRRREQRIYRWDSCERTTGRSVV*SQHTWR
Trigger: CCTCCATGTGTGCTGACTCCAGACAACCGACCTTCC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCAGAACTTTGGGACACTaGAAGGTCGGTTGTCTGGAG +
Preference number: 2 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLRTLGH*KVGCLE
Trigger: CTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTCT...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTGGTTGTGCTTTTCTGTaGTGTGTGTGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAGCAFL*CVCVCV
Trigger: CACACACACACACACACACCACAGAAAAGCACAACC...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCAGCAAAGGTCTGGGCTaGAGACAGGCAGCTTTGAGC +
Preference number: 2 (lower is better)
Translates to: HRRREQRIYRWDSCERTTSKGLG*RQAALS
Trigger: GCTCAAAGCTGCCTGTCTCCAGCCCAGACCTTTGCT...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 90 bp CTTGTTGACATGTCTATTTCTCATTTACATATGTACACACGGCCCTaGAGTCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCG +
Preference number: 2 (lower is better)
Translates to: LVDMSISHLHMYTRP*SRCCSLPRLDWSGP
Trigger: CGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGAAATAGACATGTCAACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCCGTGTCCTTCCTCACTaGTGCAAACTGTCACCACTC +
Preference number: 2 (lower is better)
Translates to: HRRREQRIYRWDSCERTTRVLPH*CKLSPL
Trigger: GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACG...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR GCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGTGCTTCCCTACCATGTaGCCCTACAGCTGTCTGGGG +
Preference number: 2 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPECFPTM*PYSCLG
Trigger: CCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCA...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGGACTGGAGACCCACATaGCTTTCCCTGCCTAGTGTG +
Preference number: 2 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPEDWRPT*LSLPSV
Trigger: CACACTAGGCAGGGAAAGCCATGTGGGTCTCCAGTC...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTTTTAAAAGCAGGGATTaGCTTGGGGCAAAGCTGCAA +
Preference number: 2 (lower is better)
Translates to: CPDTMFLSFRAPSSELPAFKSRD*LGAKLQ
Trigger: TTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAA...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp AGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTaGTTCTGTGGGGCTCTGGCTGGCATCGTCCTCTGG +
Preference number: 3 (lower is better)
Translates to: RDWLGAKLQGPG*FCGALAGIVLW
Trigger: CCAGAGGACGATGCCAGCCAGAGCCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp GCCCTGCTGTGGAGTCGTTTCCCTGGGGGCCTATGCTaGTTCCCTACCATGTGCCCCTACAGCTGTCTGGGG +
Preference number: 3 (lower is better)
Translates to: ALLWSRFPGGLC*FPTMCPYSCLG
Trigger: CCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCCCCCAGGGAAACGACTCCACAGCAGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp CCTAGTGTGCTCTGCTCAGCTCTCAGCCTGAGGTCCTaGTGTGGGAGGCCTGAGCATGGGCTCCTGGGAGGA +
Preference number: 3 (lower is better)
Translates to: PSVLCSALSLRS*CGRPEHGLLGG
Trigger: TCCTCCCAGGAGCCCATGCTCAGGCCTCCCACACCAGGACCTCAGGCTGAGAGCTGAGCAGAGCACACTAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCCACGACCCCCGGCCTaGAGGGATGGTCTCCTCCCC +
Preference number: 3 (lower is better)
Translates to: HLLGEQECGASSGWREKYPRPPA*RDGLLP
Trigger: GGGGAGGAGACCATCCCTCAAGGCCGGGGGTCGTGG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 72 bp CTCAGCTCTCAGCCTGAGGTCCTGGTGTGGGAGGCCTaGGCATGGGCTCCTGGGAGGAATAGGATGTGGGAC +
Preference number: 3 (lower is better)
Translates to: LSSQPEVLVWEA*AWAPGRNRMWD
Trigger: GTCCCACATCCTATTCCTCCCAGGAGCCCATGCTCAGGCCTCCCACACCAGGACCTCAGGCTGAGAGCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp TCACCACTCCTCCAAGGCTTGTCCACTACCCTGGCCTaGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGT +
Preference number: 3 (lower is better)
Translates to: SPLLQGLSTTLA*GPEHRLLSGSS
Trigger: ACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAGGAGTGGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp GGCTGCTTCTGTGGGGCTCTGGCTGGCATCGTCCTCTaGCCTCTAACTAACGGAGGGCTCCCTTTGGTGTGG +
Preference number: 3 (lower is better)
Translates to: GCFCGALAGIVL*PLTNGGLPLVW
Trigger: CCACACCAAAGGGAGCCCTCCGTTAGTTAGAGGCCAGAGGACGATGCCAGCCAGAGCCCCACAGAAGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 72 bp GAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTaGACTTGCTGGTGGGCACTTGCCTGGGAGGGAGCC +
Preference number: 3 (lower is better)
Translates to: ETFPECGLQALW*TCWWALAWEGA
Trigger: GGCTCCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR GCA 72 bp TGGAGACCCACATGGCTTTCCCTGCCTAGTGTGCTCTaGTCAGCTCTCAGCCTGAGGTCCTGGTGTGGGAGG +
Preference number: 3 (lower is better)
Translates to: WRPTWLSLPSVL*SALSLRSWCGR
Trigger: CCTCCCACACCAGGACCTCAGGCTGAGAGCTGAGCAGAGCACACTAGGCAGGGAAAGCCATGTGGGTCTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp TGGCCTCTAACTAACGGAGGGCTCCCTTTGGTGTGGTaGACACACTCTCTGCTCCCCGCAAGGCATGGCCCT +
Preference number: 3 (lower is better)
Translates to: WPLTNGGLPLVW*THSLLPARHGP
Trigger: AGGGCCATGCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAGTTAGAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp AAGGCCCTGCTGTGGAGTCGTTTCCCTGGGGGCCTATaGTGCTTCCCTACCATGTGCCCCTACAGCTGTCTG +
Preference number: 3 (lower is better)
Translates to: KALLWSRFPGGL*CFPTMCPYSCL
Trigger: CAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCCCCCAGGGAAACGACTCCACAGCAGGGCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp AACTGTCACCACTCCTCCAAGGCTTGTCCACTACCCTaGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTT +
Preference number: 3 (lower is better)
Translates to: NCHHSSKACPLP*PGGRSTGFFRV
Trigger: AACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAGGAGTGGTGACAGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp GGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCATaGCCCTGGTCTGAGTTAAGGAGCCCTCCTCTGCAT +
Preference number: 3 (lower is better)
Translates to: GVVHTLSAPRKA*PWSELRSPPLH
Trigger: ATGCAGAGGAGGGCTCCTTAACTCAGACCAGGGCCATGCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp CTCTGGCCTCTAACTAACGGAGGGCTCCCTTTGGTGTaGTGCACACACTCTCTGCTCCCCGCAAGGCATGGC +
Preference number: 3 (lower is better)
Translates to: LWPLTNGGLPLV*CTHSLLPARHG
Trigger: GCCATGCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAGTTAGAGGCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGCCATTGGCATGTCTCTaGCTGGGCCTGGATTCCCTC +
Preference number: 3 (lower is better)
Translates to: KAGIGLGQSCKALAASVGPLACL*LGLDSL
Trigger: GAGGGAATCCAGGCCCAGCAAGAGACATGCCAATGG...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGCTCCTCCCCAGAGGGTaGTGCTTTTCTGTGGTGTGT +
Preference number: 3 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGLLPRG*CFSVVC
Trigger: ACACACCACAGAAAAGCACAACCCTCTGGGGAGGAG...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 72 bp AACCTGCTGGACCAGACTGAGAGACTTGGAGATCCATaGAGGCCCTGCTGTGGAGTCGTTTCCCTGGGGGCC +
Preference number: 3 (lower is better)
Translates to: NLLDQTERLGDP*RPCCGVVSLGA
Trigger: GGCCCCCAGGGAAACGACTCCACAGCAGGGCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 72 bp ACAACCTGGCATCACCACAGGCATCACCGTAGGCCATaGGGCTCAGGGGGACACAGACCAGCCTGGCACAAA +
Preference number: 3 (lower is better)
Translates to: TTWHHHRHHRRP*GSGGHRPAWHK
Trigger: TTTGTGCCAGGCTGGTCTGTGTCCCCCTGAGCCTCATGGCCTACGGTGATGCCTGTGGTGATGCCAGGTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 72 bp GAGTGCCAGGGAGCACAGAGGGAGGCTAATGACCGATaGCAAATGAGGACGCTGGCAGTGGACAGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: ECQGAQREANDR*QMRTLAVDRRQ
Trigger: CTGCCTCCTGTCCACTGCCAGCGTCCTCATTTGTCATCGGTCATTAGCCTCCCTCTGTGCTCCCTGGCACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp GAGATCCATGAAGGCCCTGCTGTGGAGTCGTTTCCCTaGGGGCCTATGCTGCTTCCCTACCATGTGCCCCTA +
Preference number: 3 (lower is better)
Translates to: EIHEGPAVESFP*GPMLLPYHVPL
Trigger: TAGGGGCACATGGTAGGGAAGCAGCATAGGCCCCCAGGGAAACGACTCCACAGCAGGGCCTTCATGGATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCCATTGGCATGTCTCTaGCTGGGCCTGGATTCCCTC +
Preference number: 3 (lower is better)
Translates to: HLLGEQECGASSGWREKYPLACL*LGLDSL
Trigger: GAGGGAATCCAGGCCCAGCAAGAGACATGCCAATGG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 72 bp AGGGAGCACAGAGGGAGGCTAATGACCGATGACAAATaGGGACGCTGGCAGTGGACAGGAGGCAGGAGAAGG +
Preference number: 3 (lower is better)
Translates to: REHRGRLMTDDK*GRWQWTGGRRR
Trigger: CCTTCTCCTGCCTCCTGTCCACTGCCAGCGTCCTCATTTGTCATCGGTCATTAGCCTCCCTCTGTGCTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR TCA 72 bp TTGCACTGGAAAGCTGTGGAGAACCTGGGCATGCCTTaGCAGGAACTAGCAGGGACCCCAGGCTGTTCTGGG +
Preference number: 3 (lower is better)
Translates to: LHWKAVENLGMP*QELAGTPGCSG
Trigger: CCCAGAACAGCCTGGGGTCCCTGCTAGTTCCTGTCAAGGCATGCCCAGGTTCTCCACAGCTTTCCAGTGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 72 bp TGGCATGTCTCTTGCTGGGCCTGGATTCCCTCAGCTTaGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCT +
Preference number: 3 (lower is better)
Translates to: WHVSCWAWIPSA*VCLPGAVFRLA
Trigger: AGCAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACATGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp ACCTACAGTCGCCATTGGCATGTCTCTTGCTGGGCCTaGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCC +
Preference number: 3 (lower is better)
Translates to: TYSRHWHVSCWA*IPSAWVCLPGA
Trigger: GGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACATGCCAATGGCGACTGTAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp GTGCACACACTCTCTGCTCCCCGCAAGGCATGGCCCTaGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTT +
Preference number: 3 (lower is better)
Translates to: VHTLSAPRKAWP*SELRSPPLHCL
Trigger: AAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCAGGGCCATGCCTTGCGGGGAGCAGAGAGTGTGTGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp CTGAGATGCTCTGGTGCACCCAGCAAAGGTCTGGGCTaGAGACAGGCAGCTTTGAGCAGAGAACCTGCTGGA +
Preference number: 3 (lower is better)
Translates to: LRCSGAPSKGLG*RQAALSREPAG
Trigger: TCCAGCAGGTTCTCTGCTCAAAGCTGCCTGTCTCCAGCCCAGACCTTTGCTGGGTGCACCAGAGCATCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp TGTCCCTACCAGCTGACTGAGAGTGGTTCTCAACAGTaGGTTGCCTGGTCTCTCAACTCGAGCACAGCCGCC +
Preference number: 3 (lower is better)
Translates to: CPYQLTESGSQQ*VAWSLNSSTAA
Trigger: GGCGGCTGTGCTCGAGTTGAGAGACCAGGCAACCCACTGTTGAGAACCACTCTCAGTCAGCTGGTAGGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 72 bp CAGGCAGCTTTGAGCAGAGAACCTGCTGGACCAGACTaGGAGACTTGGAGATCCATGAAGGCCCTGCTGTGG +
Preference number: 3 (lower is better)
Translates to: QAALSREPAGPD*ETWRSMKALLW
Trigger: CCACAGCAGGGCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAAGCTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp CATTTACATATGTACACACGGCCCTTGAGTCGCTGCTaGTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGG +
Preference number: 3 (lower is better)
Translates to: HLHMYTRPLSRC*SLPRLDWSGPR
Trigger: CCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 72 bp CCAGAGCATTCAGGCAAACAGGACTGGAGACCCACATaGCTTTCCCTGCCTAGTGTGCTCTGCTCAGCTCTC +
Preference number: 3 (lower is better)
Translates to: PEHSGKQDWRPT*LSLPSVLCSAL
Trigger: GAGAGCTGAGCAGAGCACACTAGGCAGGGAAAGCCATGTGGGTCTCCAGTCCTGTTTGCCTGAATGCTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp GGCCCTGACCTGTTTCCTGCCAGTCCCTACAAGGTGTaGCACTCTCTCTCAGACACGGCACTTTGTCCTTGT +
Preference number: 3 (lower is better)
Translates to: GPDLFPASPYKV*HSLSDTALCPC
Trigger: ACAAGGACAAAGTGCCGTGTCTGAGAGAGAGTGCCACACCTTGTAGGGACTGGCAGGAAACAGGTCAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp TATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTaGGGAAAGGAGAACCCAGAGGGAAGTGGGTCCCAT +
Preference number: 3 (lower is better)
Translates to: YAASLPCAPTAV*GKENPEGSGSH
Trigger: ATGGGACCCACTTCCCTCTGGGTTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp GGGCTGGAGACAGGCAGCTTTGAGCAGAGAACCTGCTaGACCAGACTGAGAGACTTGGAGATCCATGAAGGC +
Preference number: 3 (lower is better)
Translates to: GLETGSFEQRTC*TRLRDLEIHEG
Trigger: GCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAAGCTGCCTGTCTCCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp CAGCTGACTGAGAGTGGTTCTCAACAGTGGGTTGCCTaGTCTCTCAACTCGAGCACAGCCGCCTCTTCTGCT +
Preference number: 3 (lower is better)
Translates to: QLTESGSQQWVA*SLNSSTAASSA
Trigger: AGCAGAAGAGGCGGCTGTGCTCGAGTTGAGAGACCAGGCAACCCACTGTTGAGAACCACTCTCAGTCAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGCCACGACCCCCGGCCTaGAGGGATGGTCTCCTCCCC +
Preference number: 3 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPEPRPPA*RDGLLP
Trigger: GGGGAGGAGACCATCCCTCAAGGCCGGGGGTCGTGG...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR GCA 72 bp TGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTaGTGCAAACTGTCACCACTCCTCCAAGGCTTGTCC +
Preference number: 3 (lower is better)
Translates to: WCVCVCVRVLPH*CKLSPLLQGLS
Trigger: GGACAAGCCTTGGAGGAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp TGCCTGGTCTCTCAACTCGAGCACAGCCGCCTCTTCTaGTCCTCTCTCATCTGTACAAATAGCCCTGGTTGG +
Preference number: 3 (lower is better)
Translates to: CLVSQLEHSRLF*SSLICTNSPGW
Trigger: CCAACCAGGGCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGAGACCAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR GCA 72 bp TCTCATTTACATATGTACACACGGCCCTTGAGTCGCTaGTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCG +
Preference number: 3 (lower is better)
Translates to: SHLHMYTRPLSR*CSLPRLDWSGP
Trigger: CGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 72 bp GACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATaGAGGGACCTACAGTCGCCATTGGCATGTCTCTTG +
Preference number: 3 (lower is better)
Translates to: DTGRSVVWSQHT*RDLQSPLACLL
Trigger: CAAGAGACATGCCAATGGCGACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGAGCCCTCCTCTGCATaGTCTTGGCTCTGGGGAAGG +
Preference number: 3 (lower is better)
Translates to: HRRREQRIYRWDSCERTTEPSSA*SWLWGR
Trigger: CCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp AGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTaGTCTAGGCATAGATCCCAGAGCATTCAGGCAAAC +
Preference number: 3 (lower is better)
Translates to: SLGLSSRGRLQA*SRHRSQSIQAN
Trigger: GTTTGCCTGAATGCTCTGGGATCTATGCCTAGAGCAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR GCA 72 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTaGAAACTGTCACCACTCCTCCAAGGCTTGTCCACT +
Preference number: 3 (lower is better)
Translates to: CVCVCVRVLPHC*KLSPLLQGLST
Trigger: AGTGGACAAGCCTTGGAGGAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp ATGGAAGAACTTTGGGACACTGGAAGGTCGGTTGTCTaGAGTCAGCACACATGGAGGGACCTACAGTCGCCA +
Preference number: 3 (lower is better)
Translates to: MEELWDTGRSVV*SQHTWRDLQSP
Trigger: TGGCGACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTCTTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp TCCAACATTTCTCTGGAAGGAGACATTTCCGGAGTGTaGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGC +
Preference number: 3 (lower is better)
Translates to: SNISLEGDISGV*ASGSVVNLLVG
Trigger: GCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATGTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CCA 72 bp GCTCTCTCAAACCCTGGATCGGCTCCAACATTTCTCTaGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCT +
Preference number: 3 (lower is better)
Translates to: ALSNPGSAPTFL*KETFPECGLQA
Trigger: AGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATGTTGGAGCCGATCCAGGGTTTGAGAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAAAACATGGAAGAACTTaGGGACACTGGAAGGTCGGT +
Preference number: 3 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEKHGRT*GHWKVG
Trigger: ACCGACCTTCCAGTGTCCCAAAGTTCTTCCATGTTT...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTAAAGCAGGGATTGGCTaGGGGCAAAGCTGCAAGGCC +
Preference number: 3 (lower is better)
Translates to: CPDTMFLSFRAPSSELPAKAGIG*GQSCKA
Trigger: GGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGAGAACCTGGGCATGCCTaGACAGGAACTAGCAGGGAC +
Preference number: 3 (lower is better)
Translates to: QTCSSLGFRASVREKVLGEPGHA*TGTSRD
Trigger: GTCCCTGCTAGTTCCTGTCAAGGCATGCCCAGGTTC...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 72 bp GAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTaGGCGGACAACCTGGCATCACCACAGGCATCACCG +
Preference number: 3 (lower is better)
Translates to: EKGAKNLQMGLM*ADNLASPQASP
Trigger: CGGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp TGTACATACGATGTACAAAGACAAGGGCGGGTTCTGTaGACGTCACTTCAGGCTGCACGTGTGGGTGTGGAT +
Preference number: 3 (lower is better)
Translates to: CTYDVQRQGRVL*TSLQAARVGVD
Trigger: ATCCACACCCACACGTGCAGCCTGAAGTGACGTCCACAGAACCCGCCCTTGTCTTTGTACATCGTATGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR-3UTR CAA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTAAACATGGAAGAACTTaGGGACACTGGAAGGTCGGT +
Preference number: 3 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAKHGRT*GHWKVG
Trigger: ACCGACCTTCCAGTGTCCCAAAGTTCTTCCATGTTT...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CCA 72 bp TCCAGCCCCCGATGTCTTTGTAGCTCTCTCAAACCCTaGATCGGCTCCAACATTTCTCTGGAAGGAGACATT +
Preference number: 3 (lower is better)
Translates to: SSPRCLCSSLKP*IGSNISLEGDI
Trigger: AATGTCTCCTTCCAGAGAAATGTTGGAGCCGATCCAGGGTTTGAGAGAGCTACAAAGACATCGGGGGCTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 72 bp TATGGGTGGGTTGCTCGTTGTGGTAAAGTGGCTTGCTaGGACCTCATTTCGGAGGTTACTATGGCTCCAAGT +
Preference number: 3 (lower is better)
Translates to: YGWVARCGKVAC*DLISEVTMAPS
Trigger: ACTTGGAGCCATAGTAACCTCCGAAATGAGGTCTCAGCAAGCCACTTTACCACAACGAGCAACCCACCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 72 bp TGTCTATTTCTCATTTACATATGTACACACGGCCCTTaGGTCGCTGCTGCTCTCTGCCTCGTCTGGATTGGT +
Preference number: 3 (lower is better)
Translates to: CLFLIYICTHGP*VAAALCLVWIG
Trigger: ACCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGAAATAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR TCA 72 bp AAGGCTAACAAACGGGATCTAGTATTCCACGTAGAATaGAGGAGTTCCAAGCCTTTTGTTGTTTCTCTGTTT +
Preference number: 3 (lower is better)
Translates to: KANKRDLVFHVE*RSSKPFVVSLF
Trigger: AAACAGAGAAACAACAAAAGGCTTGGAACTCCTTCATTCTACGTGGAATACTAGATCCCGTTTGTTAGCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGCGGCCGCTGGCTGGGTaGAGTCAGCAGGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSRPLAG*SQQEAE
Trigger: CTCGGCCTCCTGCTGACTTCACCCAGCCAGCGGCCG...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGAGGGGCTGATGCCGGGTaGTCGGGGCTGGTTCATGCC +
Preference number: 4 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGGADAG*SGLVHA
Trigger: GGCATGAACCAGCCCCGACCACCCGGCATCAGCCCC...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGCCTGGGAGGCCTGTTaGCGCTCCCTTGGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSAWEAC*RSLGCS
Trigger: GCTACAGCCAAGGGAGCGTCAACAGGCCTCCCAGGC...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCCCGTCAGGCAGCCCATaGGGCTCTGCTCAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGPSGSP*GSAQRA
Trigger: GGCCCTTTGAGCAGAGCCTCATGGGCTGCCTGACGG...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTAGGGATGCCCATGCCTaGTGGGGCACTAGGACCCCC +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSRDAHA*WGTRTP
Trigger: GGGGGTCCTAGTGCCCCAGCAGGCATGGGCATCCCT...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTTGCAGCAGCGGCCGCTaGCTGGGTGAAGTCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSCSSGR*LGEVSR
Trigger: CCTGCTGACTTCACCCAGCCAGCGGCCGCTGCTGCA...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTAGGGTACTGGCCTaGCTGGGTGGGGAACTGGCT +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSGRVLA*LGGELA
Trigger: AGCCAGTTCCCCACCCAGCCAGGCCAGTACCCTACC...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGAGCTCGTCATTGTGGTTaGCTGGGGGTGGTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGARHCG*LGVVAE
Trigger: CTCTGCCACCACCCCCAGCCAACCACAATGACGAGC...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCGCTGGTGCTCATGCCTaGTGCCATGGGGTTGCCACC +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGAGAHA*CHGVAT
Trigger: GGTGGCAACCCCATGGCATCAGGCATGAGCACCAGC...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGGCTGGTGCTCATGCCTaGTGCCATGGGGTTGCCACC +
Preference number: 4 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGAGAHA*CHGVAT
Trigger: GGTGGCAACCCCATGGCATCAGGCATGAGCACCAGC...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCGAACTGTGGGGAGTTaGTGCCGGGGTTGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSRTVGS*CRGCWC
Trigger: GCACCAGCAACCCCGGCATCAACTCCCCACAGTTCG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCCGGCCGCTGGCTGGGTaGAGTCAGCAGGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVRPLAG*SQQEAE
Trigger: CTCGGCCTCCTGCTGACTTCACCCAGCCAGCGGCCG...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGCTGCAGCTCCAGGTCTaGCCTCCACATCAGCGTCTG +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSLQLQV*PPHQRL
Trigger: CAGACGCTGATGTGGAGGTCAGACCTGGAGCTGCAG...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGGAGGCCCTGCCTGGCTaGTGGGGTGTGGTACGTGCA +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGEALPG*WGVVRA
Trigger: TGCACGTACCACACCCCAGCAGCCAGGCAGGGCCTC...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTAATGGAGGCCCTGCCTaGCTGCTGGGGTGTGGTACG +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSNGGPA*LLGCGT
Trigger: CGTACCACACCCCAGCAGCCAGGCAGGGCCTCCATT...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGGGTCAGGTCGCTGTGTaGATGGTTGCCGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGGQVAV*MVAGSG
Trigger: GCCGCTCCCGGCAACCATCCACACAGCGACCTGACC...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTTTCTGGCGGCTCTTCTaGTGTCGCAGCAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSFWRLF*CRSSSR
Trigger: CCTGCTGCTGCTGCGACATCAGAAGAGCCGCCAGAA...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACGTGTGCCAAAGGGGCTaGTGCCGGGTGGTCGGGGCT +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYVCQRG*CRVVGA
Trigger: AGCCCCGACCACCCGGCATCAGCCCCTTTGGCACAC...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGGCCTGGGAGGCCTGTTaGCGCTCCCTTGGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: TCLGGSLRKSASGVASGVAWEAC*RSLGCS
Trigger: GCTACAGCCAAGGGAGCGTCAACAGGCCTCCCAGGC...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGTTCCCTGGAACAGGTaGGTGGGGGTAATTCGCCAC +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSVPWNR*VGVIRH
Trigger: GTGGCGAATTACCCCCACTCACCTGTTCCAGGGAAC...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCCCCGCACGGGGAATGTaGGCCGTAGCTCGTCATTGT +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGPARGM*AVARHC
Trigger: ACAATGACGAGCTACGGCTCACATTCCCCGTGCGGG...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGAGAGAACTGTTGCTGTTaGCCTGCGAACTGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGENCCC*PANCGE
Trigger: CTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTC...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTACCTTGATGGCGGTCTaGTCCACGCCATCCTCCCCA +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSTLMAV*STPSSP
Trigger: TGGGGAGGATGGCGTGGAGCAGACCGCCATCAAGGT...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCGCGGCCTGTGGTGGCTaGCGGGGAGGCTGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTAACGG*RGGWEG
Trigger: TCCTTCCCAGCCTCCCCGGCAGCCACCACAGGCCGC...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAACCGGGTGGTCGGGGCTaGTTCATGCCCATGGGAGGG +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEPGGRG*FMPMGG
Trigger: CCCTCCCATGGGCATGAACCAGCCCCGACCACCCGG...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTTGCTCCCGGGCGTCATaGGGGGAGTGGGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPCSRAS*GEWGSL
Trigger: CAGGGAACCCCACTCCCCCCATGACGCCCGGGAGCA...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGGGCTGCTGTAGTCGTTaGAGCTGGTGCCCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLGCCSR*SWCPQE
Trigger: CTCCTGGGGGCACCAGCTCCAACGACTACAGCAGCC...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCATGGAGGGATGGGGCTaGTCAGAACTGCCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGMEGWG*SELPAW
Trigger: CCACGCTGGCAGTTCTGACCAGCCCCATCCCTCCAT...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGAGGTCGCTGTGTGGATaGTTGCCGGGAGCGGCCTGT +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGRSLCG*LPGAAC
Trigger: ACAGGCCGCTCCCGGCAACCATCCACACAGCGACCT...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGTTCTGGCGGCTCTTCTaGTGTCGCAGCAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLFWRLF*CRSSSR
Trigger: CCTGCTGCTGCTGCGACATCAGAAGAGCCGCCAGAA...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCGTTTCCTGCATGGGGTaGCTGAGGGGTTTCTCGAGG +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGVSCMG*LRGFSR
Trigger: CCTCGAGAAACCCCTCAGTCACCCCATGCAGGAAAC...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCCCCTGTGCTCCGGCCTaGCCCTCTAAGGCTGAGGAG +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVPCAPA*PSKAEE
Trigger: CTCCTCAGCCTTAGAGGGTCAGGCCGGAGCACAGGG...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTGGTTGCTGGTGCTCATaGCTGATGCCATGGGGTTGC +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSGCWCS*LMPWGC
Trigger: GCAACCCCATGGCATCAGGCATGAGCACCAGCAACC...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGTGCCGGGGTTGCTGGTaGTCATGCCTGATGCCATGG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGCRGCW*SCLMPW
Trigger: CCATGGCATCAGGCATGAGCACCAGCAACCCCGGCA...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTAGGGATGCCCATGCCTaGTGGGGCACTAGGACCCCC +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPRDAHA*WGTRTP
Trigger: GGGGGTCCTAGTGCCCCAGCAGGCATGGGCATCCCT...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAATGGGAGGGCCGCTCATaGCCGAGGGTGTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEWEGRS*PRVSCQ
Trigger: CTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCA...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCCCAGGCTGGCATACATaGTTGAGGTGCAGGGGCTTG +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGPGWHT*LRCRGL
Trigger: CAAGCCCCTGCACCTCAAGCATGTATGCCAGCCTGG...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGTTCTTGAGGAGGCCCTaGAGCACGGAGCGCACAGAG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGFLRRP*STERTE
Trigger: CTCTGTGCGCTCCGTGCTGCAGGGCCTCCTCAAGAA...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGACATGGGGTTGCCACCTaGATTCATAGGGTTGTTGGC +
Preference number: 4 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGHGVAT*IHRVVG
Trigger: GCCAACAACCCTATGAATCCAGGTGGCAACCCCATG...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGAGTGCAGGGCCAGCTTTaGTGGAGAACTGTTGCTGTT +
Preference number: 4 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGVQGQL*WRTVAV
Trigger: AACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCAC...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCGCAGCGGCCGCTGGCTaGGTGAAGTCAGCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTAAAAG*VKSAGG
Trigger: GCCTCCTGCTGACTTCACCCAGCCAGCGGCCGCTGC...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTGCAGCGGCCGCTGGCTaGGTGAAGTCAGCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAAAAAG*VKSAGG
Trigger: GCCTCCTGCTGACTTCACCCAGCCAGCGGCCGCTGC...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCTGGCTGTTATACGCCTaGGTGGGACCCATCGGTCCA +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGWLLYA*VGPIGP
Trigger: TGGACCGATGGGTCCCACCCAGGCGTATAACAGCCA...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007961.15
CDS-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACGCTGGTTCATGCCCATaGGAGGGCCGCTCATGCCCG +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYAGSCP*EGRSCP
Trigger: CGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGC...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAATCAGCCTCAGGTGTAGCCTCGGGTGTGAACGGAGAGATGACCAGAGAGGCTCCGGGTGGTCGGGGCTaGTTCATGCCCATGGGAGGG +
Preference number: 4 (lower is better)
Translates to: KSASGVASGVNGEMTREAPGGRG*FMPMGG
Trigger: CCCTCCCATGGGCATGAACCAGCCCCGACCACCCGG...AGCCTCTCTGGTCATCTCTCCGTTCACACCCGAGGCTACACCTGAGGCTGATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGAGATGTGAGTGGCCTTaGGGGGTTAGGGGTAGGGTA +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSRCEWP*GVRGRV
Trigger: TACCCTACCCCTAACCCCCCAAGGCCACTCACATCT...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGTGGTTGGCTGGGGGTaGTGGCAGAGCACTCATATT +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSVVGWG*WQSTHI
Trigger: AATATGAGTGCTCTGCCACCACCCCCAGCCAACCAC...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTTGCAGCACAAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTTGTGCTGCA...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTGGGCGGCCATGTTGTTaGGCATGTCCGGTGGGTGCG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPGRPCC*ACPVGA
Trigger: CGCACCCACCGGACATGCCCAACAACATGGCCGCCC...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGATGGAGGGATGGGGCTaGTCAGAACTGCCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGMEGWG*SELPAW
Trigger: CCACGCTGGCAGTTCTGACCAGCCCCATCCCTCCAT...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGGTCAGGTCGCTGTGTaGATGGTTGCCGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEGQVAV*MVAGSG
Trigger: GCCGCTCCCGGCAACCATCCACACAGCGACCTGACC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCGTGTGCCAAAGGGGCTaGTGCCGGGTGGTCGGGGCT +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLVCQRG*CRVVGA
Trigger: AGCCCCGACCACCCGGCATCAGCCCCTTTGGCACAC...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGGGAACACGTGGTTGCTaGCGGCAAGGTTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGGTRGC*RQGCAP
Trigger: TGGAGCACAACCTTGCCGTCAGCAACCACGTGTTCC...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTCCTGCATGGGGTGACTaGGGGGTTTCTCGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAPAWGD*GVSRGR
Trigger: CCGCCCTCGAGAAACCCCTCAGTCACCCCATGCAGG...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGCAGCCCATGAGGCTCTaGTCAAAGGGCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGQPMRL*SKGLWK
Trigger: CTTCCAGAGGCCCTTTGAGCAGAGCCTCATGGGCTG...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCTTCCGGCATGTCGGATaGTCCCTGTGCTCCGGCCTG +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVFRHVG*SLCSGL
Trigger: CAGGCCGGAGCACAGGGAGCATCCGACATGCCGGAA...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGACTGCAGACGGTCATTaGTCTGCTGGATGTGCCTGT +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSTADGH*SAGCAC
Trigger: ACAGGCACATCCAGCAGACCAATGACCGTCTGCAGT...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGAGCCGGGAGGCTGATTaGTGTTCTGCTGCCAAGGGA +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGSREAD*CSAAKG
Trigger: TCCCTTGGCAGCAGAACACCAATCAGCCTCCCGGCT...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAATCAGCCTCAGGTGTAGCCTCGGGTGTGAACGGAGAGATGACCAGAGAGGCTTGCAGCAGCGGCCGCTaGCTGGGTGAAGTCAGCAGG +
Preference number: 4 (lower is better)
Translates to: KSASGVASGVNGEMTREACSSGR*LGEVSR
Trigger: CCTGCTGACTTCACCCAGCCAGCGGCCGCTGCTGCA...AGCCTCTCTGGTCATCTCTCCGTTCACACCCGAGGCTACACCTGAGGCTGATTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCCCCGAGGCCCGGGTTaGTTCATGAATTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSPRGPG*FMNWLL
Trigger: TAACAGCCAATTCATGAACCAACCCGGGCCTCGGGG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAATCAGCCTCAGGTGTAGCCTCGGGTGTGAACGGAGAGATGACCAGAGAGGCTGCTGGTTCATGCCCATaGGAGGGCCGCTCATGCCCG +
Preference number: 4 (lower is better)
Translates to: KSASGVASGVNGEMTREAAGSCP*EGRSCP
Trigger: CGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGC...AGCCTCTCTGGTCATCTCTCCGTTCACACCCGAGGCTACACCTGAGGCTGATTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCGCAGGTGGAACACGTaGTTGCTGACGGCAAGGTTG +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLRRWNT*LLTARL
Trigger: CAACCTTGCCGTCAGCAACCACGTGTTCCACCTGCG...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGGCGTCTGATGAACCGTaGGCCGCAGGTGGAACACGT +
Preference number: 4 (lower is better)
Translates to: TCLGGSLRKSASGVASGVASDEP*AAGGTR
Trigger: ACGTGTTCCACCTGCGGCCCACGGTTCATCAGACGC...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCACTCGGAGTGTTGGATaGCGTTCAGGATCCCCCACA +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGTRSVG*RSGSPT
Trigger: TGTGGGGGATCCTGAACGCCATCCAACACTCCGAGT...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACGGCTGCTGTAGTCGTTaGAGCTGGTGCCCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYGCCSR*SWCPQE
Trigger: CTCCTGGGGGCACCAGCTCCAACGACTACAGCAGCC...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGCCCTGCCTGGCTGCTaGGGTGTGGTACGTGCAAAC +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEALPGC*GVVRAN
Trigger: GTTTGCACGTACCACACCCCAGCAGCCAGGCAGGGC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGGGAGCGGCCTGTGGTaGCTGCCGGGGAGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGGSGLW*LPGRLG
Trigger: TCCCAGCCTCCCCGGCAGCCACCACAGGCCGCTCCC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp ATCGTCCTCTGGCCTCTAACTAACGGAGGGCTCCCTTaGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGG +
Preference number: 4 (lower is better)
Translates to: IVLWPLTNGGLP*VWCTHSLLPAR
Trigger: CCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAGTTAGAGGCCAGAGGACGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCCGTCAGGCAGCCCATaGGGCTCTGCTCAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITPSGSP*GSAQRA
Trigger: GGCCCTTTGAGCAGAGCCTCATGGGCTGCCTGACGG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCAGGGAGCCGGGAGGCTaGTTGGTGTTCTGCTGCCAA +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVREPGG*LVFCCQ
Trigger: TTGGCAGCAGAACACCAATCAGCCTCCCGGCTCCCT...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTGGGTTCCCGAGGACCTaGCTCTGGGATGTGTTGGTC +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPGFPRT*LWDVLV
Trigger: GACCAACACATCCCAGAGTCAGGTCCTCGGGAACCC...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGGGTTCCCGAGGACCTaGCTCTGGGATGTGTTGGTC +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEGFPRT*LWDVLV
Trigger: GACCAACACATCCCAGAGTCAGGTCCTCGGGAACCC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCCTGCAGCTCCAGGTCTaGCCTCCACATCAGCGTCTG +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVLQLQV*PPHQRL
Trigger: CAGACGCTGATGTGGAGGTCAGACCTGGAGCTGCAG...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTGCTGGCATACATGCTTaGGGTGCAGGGGCTTGTGGG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPAGIHA*GAGACG
Trigger: CCCACAAGCCCCTGCACCTCAAGCATGTATGCCAGC...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGATCCCCCACATGTACTaGTCCACTTCCAGACCCTCG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGIPHMY*STSRPS
Trigger: CGAGGGTCTGGAAGTGGATCAGTACATGTGGGGGAT...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCGCGGGGTTCTGTAAGTaGTGCTTGATGCACTGCAGA +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGAGFCK*CLMHCR
Trigger: TCTGCAGTGCATCAAGCAGCACTTACAGAACCCCGC...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGTGTCTCTTGCAAGGCTaGCACTGTAGCTGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGCLLQG*HCSCGC
Trigger: ACAGCCACAGCTACAGTGGCAGCCTTGCAAGAGACA...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCTGTAGCTGCTGTAGCTaGTTCCGGAGGAGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGCSCCS*FRRRRC
Trigger: ACACCTTCTCCTCCGGAAGCAGCTACAGCAGCTACA...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTTTCTTGAGGAGGCCCTaGAGCACGGAGCGCACAGAG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPFLRRP*STERTE
Trigger: CTCTGTGCGCTCCGTGCTGCAGGGCCTCCTCAAGAA...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCAGTCGTTGGAGCTGGTaGCCCCAGGAGGAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTSRWSW*PQEEVG
Trigger: TCCCACCTCCTCCTGGGGGCACCAGCTCCAACGACT...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGCGGCCTGTGGTGGCTaGCGGGGAGGCTGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTAACGG*RGGWEG
Trigger: TCCTTCCCAGCCTCCCCGGCAGCCACCACAGGCCGC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCGCTGTGTGGATGGTTaGCGGGAGCGGCCTGTGGTG +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITRCVDG*RERPVV
Trigger: CACCACAGGCCGCTCCCGGCAACCATCCACACAGCG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGTTCCGGCATGTCGGATaGTCCCTGTGCTCCGGCCTG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWFRHVG*SLCSGL
Trigger: CAGGCCGGAGCACAGGGAGCATCCGACATGCCGGAA...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGACAGGAGGTCATCGTTaGTATTGCTTGGAAGGTCGG +
Preference number: 4 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSTGGHR*YCLEGR
Trigger: CCGACCTTCCAAGCAATAGCAACGATGACCTCCTGT...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCATGGGGTTGCCACCTaGATTCATAGGGTTGTTGGC +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSHGVAT*IHRVVG
Trigger: GCCAACAACCCTATGAATCCAGGTGGCAACCCCATG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCATCTGTACAAATAGCTGCTCCCGGGCGTCATaGGGGGAGTGGGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: SQLEHSRLFCSSLICTNSCSRAS*GEWGSL
Trigger: CAGGGAACCCCACTCCCCCCATGACGCCCGGGAGCA...GCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAACGTAGCTCGTCATTGTaGTTGGCTGGGGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGERSSSL*LAGGGG
Trigger: GCCACCACCCCCAGCCAACCACAATGACGAGCTACG...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTGCGTCTGATGAACCGTaGGCCGCAGGTGGAACACGT +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPASDEP*AAGGTR
Trigger: ACGTGTTCCACCTGCGGCCCACGGTTCATCAGACGC...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGACATGCTTGCAATCGTaGCCTCGAGCAGGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLTCLQS*PRAGSC
Trigger: ACAGCTGCCTGCTCGAGGCCACGATTGCAAGCATGT...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGGGCGGCCATGTTGTTaGGCATGTCCGGTGGGTGCG +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITGRPCC*ACPVGA
Trigger: CGCACCCACCGGACATGCCCAACAACATGGCCGCCC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGCCCTGCCTGGCTGCTaGGGTGTGGTACGTGCAAAC +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWALPGC*GVVRAN
Trigger: GTTTGCACGTACCACACCCCAGCAGCCAGGCAGGGC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCTGGCTGTTATACGCCTaGGTGGGACCCATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGWLLYA*VGPIWK
Trigger: TTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCA...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCGCTGGCATACATGCTTaGGGTGCAGGGGCTTGTGGG +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTAGIHA*GAGACG
Trigger: CCCACAAGCCCCTGCACCTCAAGCATGTATGCCAGC...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGCGCCATCCTCCCCATTaGGAGTTGTGTTGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWRHPPH*ELCCPR
Trigger: CCTCGGGCAACACAACTCTCAATGGGGAGGATGGCG...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTGTTTCCTGCATGGGGTaGCTGAGGGGTTTCTCGAGG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPVSCMG*LRGFSR
Trigger: CCTCGAGAAACCCCTCAGTCACCCCATGCAGGAAAC...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAACCCTGTGCTCCGGCCTaGCCCTCTAAGGCTGAGGAG +
Preference number: 4 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGEPCAPA*PSKAEE
Trigger: CTCCTCAGCCTTAGAGGGTCAGGCCGGAGCACAGGG...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGTGCTGCTTGATGCACTaGAGACGGTCATTGGTCTGC +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLCCLMH*RRSLVC
Trigger: GCAGACCAATGACCGTCTGCAGTGCATCAAGCAGCA...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAACAGCCCATGAGGCTCTaGTCAAAGGGCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEQPMRL*SKGLWK
Trigger: CTTCCAGAGGCCCTTTGAGCAGAGCCTCATGGGCTG...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGGAACTTGTCTCGATTTaGGGCGCACACAGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGELVSI*GAHSQE
Trigger: CTCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTC...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCAGCGGCGGCTGCTACTaGAGCTGCTGCAGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTSGGCY*SCCSSG
Trigger: GCCGCTGCTGCAGCAGCTGCAGTAGCAGCCGCCGCT...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTTCCCTTGGCTGTAGCTaGTGTAGCTGCTTCCGGAGG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPSLGCS*CSCFRR
Trigger: CCTCCGGAAGCAGCTACAGCAGCTACAGCCAAGGGA...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCTGGGGTGTGGTACGTaGAAACCTTGTTGTATGGAG +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSLGCGT*KPCCME
Trigger: CTCCATACAACAAGGTTTGCACGTACCACACCCCAG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAACGCTGTGTGGATGGTTaGCGGGAGCGGCCTGTGGTG +
Preference number: 4 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGERCVDG*RERPVV
Trigger: CACCACAGGCCGCTCCCGGCAACCATCCACACAGCG...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCACTGTGCGACAGAGTaGGTTTCATGGAGCTCATGG +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLHCATE*VSWSSW
Trigger: CCATGAGCTCCATGAAACCCACTCTGTCGCACAGTG...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp ATTGGTCAGGCCCGAGGGCCCATGGGGAGCAGACCTGTAGCTCTCTGGGATTTACCCCGAGGCCCGGGTTaGTTCATGAATTGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: IGQARGPMGSRPVALWDLPRGPG*FMNWLL
Trigger: TAACAGCCAATTCATGAACCAACCCGGGCCTCGGGG...TAAATCCCAGAGAGCTACAGGTCTGCTCCCCATGGGCCCTCGGGCCTGACCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGGGGCTGATGCCGGGTaGTCGGGGCTGGTTCATGCC +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGGADAG*SGLVHA
Trigger: GGCATGAACCAGCCCCGACCACCCGGCATCAGCCCC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTGGGGAACTGGCTGTTTaGTCCATATTGCTGGTTTCC +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSGELAV*SILLVS
Trigger: GGAAACCAGCAATATGGACCAAACAGCCAGTTCCCC...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGGTAGGGTACTGGCCTaGCTGGGTGGGGAACTGGCT +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITGRVLA*LGGELA
Trigger: AGCCAGTTCCCCACCCAGCCAGGCCAGTACCCTACC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGTGTAGTCGTTGGAGCTaGTGCCCCCAGGAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWCSRWS*CPQEEV
Trigger: CACCTCCTCCTGGGGGCACCAGCTCCAACGACTACA...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGTGTTGTATGGAGGGATaGGGCTGGTCAGAACTGCCA +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGCCMEG*GWSELP
Trigger: TGGCAGTTCTGACCAGCCCCATCCCTCCATACAACA...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCAATGGAGGCCCTGCCTaGCTGCTGGGGTGTGGTACG +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLNGGPA*LLGCGT
Trigger: CGTACCACACCCCAGCAGCCAGGCAGGGCCTCCATT...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCAGGTCGCTGTGTGGATaGTTGCCGGGAGCGGCCTGT +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITRSLCG*LPGAAC
Trigger: ACAGGCCGCTCCCGGCAACCATCCACACAGCGACCT...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp TGTCTCTTGCTGGGCCTGGATTCCCTCAGCTTGGGTTaGTCTTCCAGGGGCCGTCTTCAGGCTTGCTCTAGG +
Preference number: 4 (lower is better)
Translates to: CLLLGLDSLSLG*SSRGRLQACSR
Trigger: CCTAGAGCAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp TTGGCATGTCTCTTGCTGGGCCTGGATTCCCTCAGCTaGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGC +
Preference number: 4 (lower is better)
Translates to: LACLLLGLDSLS*GLSSRGRLQAC
Trigger: GCAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACATGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp CCAGAGAGGCTGGGCTACTGGGAGTGTCTAGGCCTTTaGCACTGGAAAGCTGTGGAGAACCTGGGCATGCCT +
Preference number: 4 (lower is better)
Translates to: PERLGYWECLGL*HWKAVENLGMP
Trigger: AGGCATGCCCAGGTTCTCCACAGCTTTCCAGTGCAAAAGGCCTAGACACTCCCAGTAGCCCAGCCTCTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTGTGGGAAAGGTGGTTTaGCATCTTGGCTGGGGGACA +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPVGKVV*HLGWGT
Trigger: TGTCCCCCAGCCAAGATGTCAAACCACCTTTCCCAC...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp ATTGGTCAGGCCCGAGGGCCCATGGGGAGCAGACCTGTAGCTCTCTGGGATTTAACGTGGGGTCAATGGTaGCCTCTTCAAACTCGGAGT +
Preference number: 4 (lower is better)
Translates to: IGQARGPMGSRPVALWDLTWGQW*PLQTRS
Trigger: ACTCCGAGTTTGAAGAGGTCACCATTGACCCCACGT...TAAATCCCAGAGAGCTACAGGTCTGCTCCCCATGGGCCCTCGGGCCTGACCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCCCTGCATGGGGTGACTaGGGGGTTTCTCGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGPAWGD*GVSRGR
Trigger: CCGCCCTCGAGAAACCCCTCAGTCACCCCATGCAGG...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCTGGGAGGGCCGCTCATaGCCGAGGGTGTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGWEGRS*PRVSCQ
Trigger: CTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCA...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCTCCCTTGGCTGTAGCTaGTGTAGCTGCTTCCGGAGG +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTSLGCS*CSCFRR
Trigger: CCTCCGGAAGCAGCTACAGCAGCTACAGCCAAGGGA...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCCCAGGCTGGCATACATaGTTGAGGTGCAGGGGCTTG +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTPGWHT*LRCRGL
Trigger: CAAGCCCCTGCACCTCAAGCATGTATGCCAGCCTGG...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTAGCACTGCACATGCTTaGAATCGTGGCCTCGAGCAG +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPSTAHA*NRGLEQ
Trigger: CTGCTCGAGGCCACGATTGCAAGCATGTGCAGTGCT...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGAGTTGTTTCCTTGGCTaGTGTAGTCGTTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGSCFLG*CSRWSW
Trigger: CCAGCTCCAACGACTACAGCAGCCAAGGAAACAACT...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGGGGGGAAGTCAAAGTTaGCATGACCCTGGTAGTTGT +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGGGSQS*HDPGSC
Trigger: ACAACTACCAGGGTCATGGCAACTTTGACTTCCCCC...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
57% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGAGGCCCTGCCTGGCTaGTGGGGTGTGGTACGTGCA +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTEALPG*WGVVRA
Trigger: TGCACGTACCACACCCCAGCAGCCAGGCAGGGCCTC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGCGGTCATTGGTCTGCTaGATGTGCCTGTCCATAGAA +
Preference number: 4 (lower is better)
Translates to: KAGIGLGQSCKALAASVGRSLVC*MCLSIE
Trigger: TTCTATGGACAGGCACATCCAGCAGACCAATGACCG...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGACTCTGGGATGTGTTaGTCACTCCCCACACCGTGG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWDSGMC*SLPTPW
Trigger: CCACGGTGTGGGGAGTGACCAACACATCCCAGAGTC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAACAGGGCCAGCTTTGGTaGAGAACTGTTGCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEQGQLW*RTVAVA
Trigger: GGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTG...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCGCTGCTGCTCTCTGCCTCGTCTGGATTGGTCAGGCCCGAGGGCCCATGGGGACAGAGCACTCATATTTaGCTTGATATCAGGTGGGAA +
Preference number: 4 (lower is better)
Translates to: SLLLSASSGLVRPEGPWGQSTHI*LDIRWE
Trigger: TTCCCACCTGATATCAAGCCAAATATGAGTGCTCTG...TCCCCATGGGCCCTCGGGCCTGACCAATCCAGACGAGGCAGAGAGCAGCAGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTGTCATTGTGGTTGGCTaGGGGTGGTGGCAGAGCACT +
Preference number: 4 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAVIVVG*GWWQST
Trigger: AGTGCTCTGCCACCACCCCCAGCCAACCACAATGAC...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCGTAGCTCGTCATTGTaGTTGGCTGGGGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITRSSSL*LAGGGG
Trigger: GCCACCACCCCCAGCCAACCACAATGACGAGCTACG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACACTCGGAGTGTTGGATaGCGTTCAGGATCCCCCACA +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYTRSVG*RSGSPT
Trigger: TGTGGGGGATCCTGAACGCCATCCAACACTCCGAGT...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTCCTCCGGGATTCCCATaGGGGAAGTCAAAGTTGCCA +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPPPGFP*GKSKLP
Trigger: TGGCAACTTTGACTTCCCCCATGGGAATCCCGGAGG...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGGGGAGCGGCCTGTGGTaGCTGCCGGGGAGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPEGSGLW*LPGRLG
Trigger: TCCCAGCCTCCCCGGCAGCCACCACAGGCCGCTCCC...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCACTCATATTTGGCTTaGTATCAGGTGGGAAAGGTG +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSHSYLA*YQVGKV
Trigger: CACCTTTCCCACCTGATATCAAGCCAAATATGAGTG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCATCCCCCACATGTACTaGTCCACTTCCAGACCCTCG +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTIPHMY*STSRPS
Trigger: CGAGGGTCTGGAAGTGGATCAGTACATGTGGGGGAT...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGAGACGGTCATTGGTCTaGTGGATGTGCCTGTCCATA +
Preference number: 4 (lower is better)
Translates to: TCLGGSLRKSASGVASGVRRSLV*WMCLSI
Trigger: TATGGACAGGCACATCCAGCAGACCAATGACCGTCT...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGAACTTGTCTCGATTTaGGGCGCACACAGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEELVSI*GAHSQE
Trigger: CTCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCGGTTGCTGGTGCTCATaGCTGATGCCATGGGGTTGC +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLGCWCS*LMPWGC
Trigger: GCAACCCCATGGCATCAGGCATGAGCACCAGCAACC...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGAGAACTGTTGCTGTTaGCCTGCGAACTGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWENCCC*PANCGE
Trigger: CTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCTGTCTCTTGCAAGGCTaGCACTGTAGCTGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVCLLQG*HCSCGC
Trigger: ACAGCCACAGCTACAGTGGCAGCCTTGCAAGAGACA...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCAGCCGGGAGGCTGATTaGTGTTCTGCTGCCAAGGGA +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLSREAD*CSAAKG
Trigger: TCCCTTGGCAGCAGAACACCAATCAGCCTCCCGGCT...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCGTGCAGGGCCAGCTTTaGTGGAGAACTGTTGCTGTT +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVVQGQL*WRTVAV
Trigger: AACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCAC...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGGCTGGGTGGGGAACTaGCTGTTTGGTCCATATTGC +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWGWVGN*LFGPYC
Trigger: GCAATATGGACCAAACAGCCAGTTCCCCACCCAGCC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGTTGGCTGGGGGTGGTaGCAGAGCACTCATATTTGG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWVGWGW*QSTHIW
Trigger: CCAAATATGAGTGCTCTGCCACCACCCCCAGCCAAC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGTGGTTGGCTGGGGGTaGTGGCAGAGCACTCATATT +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWVVGWG*WQSTHI
Trigger: AATATGAGTGCTCTGCCACCACCCCCAGCCAACCAC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAATGTAGTCGTTGGAGCTaGTGCCCCCAGGAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGECSRWS*CPQEEV
Trigger: CACCTCCTCCTGGGGGCACCAGCTCCAACGACTACA...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGCTGGCTGCTGGGGTGTaGTACGTGCAAACCTTGTTG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWLAAGV*YVQTLL
Trigger: CAACAAGGTTTGCACGTACCACACCCCAGCAGCCAG...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp ACATGGAGGGACCTACAGTCGCCATTGGCATGTCTCTaGCTGGGCCTGGATTCCCTCAGCTTGGGTTTGTCT +
Preference number: 4 (lower is better)
Translates to: TWRDLQSPLACL*LGLDSLSLGLS
Trigger: AGACAAACCCAAGCTGAGGGAATCCAGGCCCAGCAAGAGACATGCCAATGGCGACTGTAGGTCCCTCCATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCGCCCGGGTTGGTTCATaGATTGGCTGTTATACGCCT +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTARVGS*IGCYTP
Trigger: AGGCGTATAACAGCCAATTCATGAACCAACCCGGGC...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCACTCATATTTGGCTTaGTATCAGGTGGGAAAGGTG +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLHSYLA*YQVGKV
Trigger: CACCTTTCCCACCTGATATCAAGCCAAATATGAGTG...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGACCCGCACGGGGAATGTaGGCCGTAGCTCGTCATTGT +
Preference number: 4 (lower is better)
Translates to: QTCSSLGFRASVREKVLGPARGM*AVARHC
Trigger: ACAATGACGAGCTACGGCTCACATTCCCCGTGCGGG...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTCGCCATCCTCCCCATTaGGAGTTGTGTTGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: CPDTMFLSFRAPSSELPARHPPH*ELCCPR
Trigger: CCTCGGGCAACACAACTCTCAATGGGGAGGATGGCG...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCGTATGCGCCGGAATGTaGTGGGGCACTTCAGAGACA +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLVCAGM*WGTSET
Trigger: TGTCTCTGAAGTGCCCCATCACATTCCGGCGCATAC...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGAGCGGCGGCTGCTACTaGAGCTGCTGCAGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPESGGCY*SCCSSG
Trigger: GCCGCTGCTGCAGCAGCTGCAGTAGCAGCCGCCGCT...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCACCTTGATGGCGGTCTaGTCCACGCCATCCTCCCCA +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTTLMAV*STPSSP
Trigger: TGGGGAGGATGGCGTGGAGCAGACCGCCATCAAGGT...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACGGGGGAAGTCAAAGTTaGCATGACCCTGGTAGTTGT +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYGGSQS*HDPGSC
Trigger: ACAACTACCAGGGTCATGGCAACTTTGACTTCCCCC...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAACAGGAGGTCATCGTTaGTATTGCTTGGAAGGTCGG +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGETGGHR*YCLEGR
Trigger: CCGACCTTCCAAGCAATAGCAACGATGACCTCCTGT...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCGGTCATTGGTCTGCTaGATGTGCCTGTCCATAGAA +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYRSLVC*MCLSIE
Trigger: TTCTATGGACAGGCACATCCAGCAGACCAATGACCG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCCCATCGGTCCATACTaGTTTATATCCTTGTTCTGT +
Preference number: 4 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSPIGPY*FISLFC
Trigger: ACAGAACAAGGATATAAACCAGTATGGACCGATGGG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007961.15
CDS-3UTR CCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCTGTTATACGCCTGGGTaGGACCCATCGGTCCATACT +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTCYTPG*DPSVHT
Trigger: AGTATGGACCGATGGGTCCCACCCAGGCGTATAACA...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007961.15
CDS-3UTR CCA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCGGGGAACTGGCTGTTTaGTCCATATTGCTGGTTTCC +
Preference number: 4 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVGELAV*SILLVS
Trigger: GGAAACCAGCAATATGGACCAAACAGCCAGTTCCCC...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGTGGCTTGATATCAGGTaGGAAAGGTGGTTTGACATC +
Preference number: 4 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLWLDIR*ERWFDI
Trigger: GATGTCAAACCACCTTTCCCACCTGATATCAAGCCA...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGCTCGTCATTGTGGTTaGCTGGGGGTGGTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTARHCG*LGVVAE
Trigger: CTCTGCCACCACCCCCAGCCAACCACAATGACGAGC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCACATGCTTGCAATCGTaGCCTCGAGCAGGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLTCLQS*PRAGSC
Trigger: ACAGCTGCCTGCTCGAGGCCACGATTGCAAGCATGT...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCCTCCGGGATTCCCATaGGGGAAGTCAAAGTTGCCA +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITPPGFP*GKSKLP
Trigger: TGGCAACTTTGACTTCCCCCATGGGAATCCCGGAGG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCTGTTGTATGGAGGGATaGGGCTGGTCAGAACTGCCA +
Preference number: 4 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTCCMEG*GWSELP
Trigger: TGGCAGTTCTGACCAGCCCCATCCCTCCATACAACA...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTGTTCCCTGGAACAGGTaGGTGGGGGTAATTCGCCAC +
Preference number: 4 (lower is better)
Translates to: CPDTMFLSFRAPSSELPAVPWNR*VGVIRH
Trigger: GTGGCGAATTACCCCCACTCACCTGTTCCAGGGAAC...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGAGGAACACGTGGTTGCTaGCGGCAAGGTTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: QTCSSLGFRASVREKVLGGTRGC*RQGCAP
Trigger: TGGAGCACAACCTTGCCGTCAGCAACCACGTGTTCC...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCATCTGTACAAATAGCGTATGCGCCGGAATGTaGTGGGGCACTTCAGAGACA +
Preference number: 4 (lower is better)
Translates to: SQLEHSRLFCSSLICTNSVCAGM*WGTSET
Trigger: TGTCTCTGAAGTGCCCCATCACATTCCGGCGCATAC...GCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCACGTGGGGTCAATGGTaGCCTCTTCAAACTCGGAGT +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITTWGQW*PLQTRS
Trigger: ACTCCGAGTTTGAAGAGGTCACCATTGACCCCACGT...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAAATGACCCATCACTGTaGGACAGAGTGGGTTTCATG +
Preference number: 4 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGENDPSL*DRVGFM
Trigger: CATGAAACCCACTCTGTCGCACAGTGATGGGTCATT...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGAGTTGTTTCCTTGGCTaGTGTAGTCGTTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWSCFLG*CSRWSW
Trigger: CCAGCTCCAACGACTACAGCAGCCAAGGAAACAACT...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGCAGCATTGTGGAAGTTaGCGGGGTTCTGTAAGTGCT +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWQHCGS*RGSVSA
Trigger: AGCACTTACAGAACCCCGCCAACTTCCACAATGCTG...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCACTGTGCGACAGAGTaGGTTTCATGGAGCTCATGG +
Preference number: 4 (lower is better)
Translates to: FTDGTHVSGQPGITTGITHCATE*VSWSSW
Trigger: CCATGAGCTCCATGAAACCCACTCTGTCGCACAGTG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGACTCTGGGATGTGTTaGTCACTCCCCACACCGTGG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTDSGMC*SLPTPW
Trigger: CCACGGTGTGGGGAGTGACCAACACATCCCAGAGTC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCATCTGTACAAATAGCCAGGGCCAGCTTTGGTaGAGAACTGTTGCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: SQLEHSRLFCSSLICTNSQGQLW*RTVAVA
Trigger: GGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTG...GCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCATCTGTACAAATAGCGTTGGCTGGGGGTGGTaGCAGAGCACTCATATTTGG +
Preference number: 4 (lower is better)
Translates to: SQLEHSRLFCSSLICTNSVGWGW*QSTHIW
Trigger: CCAAATATGAGTGCTCTGCCACCACCCCCAGCCAAC...GCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGAGTCATTGTGGTTGGCTaGGGGTGGTGGCAGAGCACT +
Preference number: 4 (lower is better)
Translates to: QTCSSLGFRASVREKVLGVIVVG*GWWQST
Trigger: AGTGCTCTGCCACCACCCCCAGCCAACCACAATGAC...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTCGCAGGTGGAACACGTaGTTGCTGACGGCAAGGTTG +
Preference number: 4 (lower is better)
Translates to: CPDTMFLSFRAPSSELPARRWNT*LLTARL
Trigger: CAACCTTGCCGTCAGCAACCACGTGTTCCACCTGCG...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCTGCAGCACAAAGAGGTaGGAACAGCAGCAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTCSTKR*EQQQAV
Trigger: CACCGCCTGCTGCTGTTCCCACCTCTTTGTGCTGCA...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp TTTGAGCAGAGAACCTGCTGGACCAGACTGAGAGACTaGGAGATCCATGAAGGCCCTGCTGTGGAGTCGTTT +
Preference number: 4 (lower is better)
Translates to: FEQRTCWTRLRD*EIHEGPAVESF
Trigger: AAACGACTCCACAGCAGGGCCTTCATGGATCTCCAAGTCTCTCAGTCTGGTCCAGCAGGTTCTCTGCTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGCGAACTGTGGGGAGTTaGTGCCGGGGTTGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPERTVGS*CRGCWC
Trigger: GCACCAGCAACCCCGGCATCAACTCCCCACAGTTCG...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCAGACGGTCATTGGTCTaGTGGATGTGCCTGTCCATA +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLRRSLV*WMCLSI
Trigger: TATGGACAGGCACATCCAGCAGACCAATGACCGTCT...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGAATGACCCATCACTGTaGGACAGAGTGGGTTTCATG +
Preference number: 4 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWNDPSL*DRVGFM
Trigger: CATGAAACCCACTCTGTCGCACAGTGATGGGTCATT...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCAGCACTGCACATGCTTaGAATCGTGGCCTCGAGCAG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTSTAHA*NRGLEQ
Trigger: CTGCTCGAGGCCACGATTGCAAGCATGTGCAGTGCT...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCCTGGGGTGTGGTACGTaGAAACCTTGTTGTATGGAG +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLLGCGT*KPCCME
Trigger: CTCCATACAACAAGGTTTGCACGTACCACACCCCAG...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp AAATCAGCCTCAGGTGTAGCCTCGGGTGTGAACGGAGAGATGACCAGAGAGGCTGGTTGGTTCATGAATTaGCTGTTATACGCCTGGGTG +
Preference number: 4 (lower is better)
Translates to: KSASGVASGVNGEMTREAGWFMN*LLYAWV
Trigger: CACCCAGGCGTATAACAGCCAATTCATGAACCAACC...AGCCTCTCTGGTCATCTCTCCGTTCACACCCGAGGCTACACCTGAGGCTGATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGGCTGGGTGGGGAACTaGCTGTTTGGTCCATATTGC +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGGWVGN*LFGPYC
Trigger: GCAATATGGACCAAACAGCCAGTTCCCCACCCAGCC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CAGACCTGTAGCTCTCTGGGATTTAGGGCTTCCGTTAGGGAGAAAGTGTTAGGAAGATGTGAGTGGCCTTaGGGGGTTAGGGGTAGGGTA +
Preference number: 4 (lower is better)
Translates to: QTCSSLGFRASVREKVLGRCEWP*GVRGRV
Trigger: TACCCTACCCCTAACCCCCCAAGGCCACTCACATCT...TCCTAACACTTTCTCCCTAACGGAAGCCCTAAATCCCAGAGAGCTACAGGTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCGGGTCATCCTTGATGTaGAGGTCTGACTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLGSSLM*RSDLMG
Trigger: ACCCATCAAGTCAGACCTCCACATCAAGGATGACCC...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCCTGGCTGCTGGGGTGTaGTACGTGCAAACCTTGTTG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTLAAGV*YVQTLL
Trigger: CAACAAGGTTTGCACGTACCACACCCCAGCAGCCAG...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGCCCGGGTTGGTTCATaGATTGGCTGTTATACGCCT +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTARVGS*IGCYTP
Trigger: AGGCGTATAACAGCCAATTCATGAACCAACCCGGGC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTTGCTGCTTGATGCACTaGAGACGGTCATTGGTCTGC +
Preference number: 4 (lower is better)
Translates to: CPDTMFLSFRAPSSELPACCLMH*RRSLVC
Trigger: GCAGACCAATGACCGTCTGCAGTGCATCAAGCAGCA...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR GCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCTGTAGCTGCTGTAGCTaGTTCCGGAGGAGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGCSCCS*FRRRRC
Trigger: ACACCTTCTCCTCCGGAAGCAGCTACAGCAGCTACA...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTACTGCAGACGGTCATTaGTCTGCTGGATGTGCCTGT +
Preference number: 4 (lower is better)
Translates to: CPDTMFLSFRAPSSELPATADGH*SAGCAC
Trigger: ACAGGCACATCCAGCAGACCAATGACCGTCTGCAGT...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCAGAGCACTCATATTTaGCTTGATATCAGGTGGGAA +
Preference number: 4 (lower is better)
Translates to: HLLGEQECGASSGWREKYQSTHI*LDIRWE
Trigger: TTCCCACCTGATATCAAGCCAAATATGAGTGCTCTG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGCAAACCTTGTTGTATaGAGGGATGGGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTANLVV*RDGAGQ
Trigger: CTGACCAGCCCCATCCCTCCATACAACAAGGTTTGC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTCACACCGGTCCATACTaGTTTATATCCTTGTTCTGT +
Preference number: 4 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPHTGPY*FISLFC
Trigger: ACAGAACAAGGATATAAACCAGTATGGACCGGTGTG...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCTGTTATACGCCTGGGTaGGACCCATCTGGAAAGAGG +
Preference number: 4 (lower is better)
Translates to: HRRREQRIYRWDSCERTTCYTPG*DPSGKR
Trigger: CCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACA...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGGGTCATCCTTGATGTaGAGGTCTGACTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGGSSLM*RSDLMG
Trigger: ACCCATCAAGTCAGACCTCCACATCAAGGATGACCC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
3UTR CAA 72 bp AAAACATGGAAGAACTTTGGGACACTGGAAGGTCGGTaGTCTGGAGTCAGCACACATGGAGGGACCTACAGT +
Preference number: 4 (lower is better)
Translates to: KTWKNFGTLEGR*SGVSTHGGTYS
Trigger: ACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCCCAAAGTTCTTCCATGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR TCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGGTGGGAAAGGTGGTTTaGCATCTTGGCTGGGGGACA +
Preference number: 4 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPEVGKVV*HLGWGT
Trigger: TGTCCCCCAGCCAAGATGTCAAACCACCTTTCCCAC...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGGTTGGTTCATGAATTaGCTGTTATACGCCTGGGTG +
Preference number: 4 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGGWFMN*LLYAWV
Trigger: CACCCAGGCGTATAACAGCCAATTCATGAACCAACC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp TCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCATCTGTACAAATAGCTGGCTTGATATCAGGTaGGAAAGGTGGTTTGACATC +
Preference number: 4 (lower is better)
Translates to: SQLEHSRLFCSSLICTNSWLDIR*ERWFDI
Trigger: GATGTCAAACCACCTTTCCCACCTGATATCAAGCCA...GCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
3UTR CAA 72 bp ATGTCTATTTCTCATTTACATATGTACACACGGCCCTaGAGTCGCTGCTGCTCTCTGCCTCGTCTGGATTGG +
Preference number: 4 (lower is better)
Translates to: MSISHLHMYTRP*SRCCSLPRLDW
Trigger: CCAATCCAGACGAGGCAGAGAGCAGCAGCGACTCAAGGGCCGTGTGTACATATGTAAATGAGAAATAGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CCA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGGCAAACCTTGTTGTATaGAGGGATGGGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPEANLVV*RDGAGQ
Trigger: CTGACCAGCCCCATCCCTCCATACAACAAGGTTTGC...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS CCA 90 bp CTTTGCCCGTGTGTGCCAAAGGGGCTGATGCCGGGTGGTCGGGGCTaGTTCATGCCCATGGGAGGGCCGCTCATGCCCGAGGGTGTCATG +
Preference number: 5 (lower is better)
Translates to: LCPCVPKGLMPGGRG*FMPMGGPLMPEGVM
Trigger: CATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCACCCGGCATCAGCCCCTTTGGCACACACGGGCAAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp CCCTCTAAGGCTGAGGAGGGGTTAAAGGTCAGGTCGCTGTGTGGATaGTTGCCGGGAGCGGCCTGTGGTGGCTGCCGGGGAGGCTGGGAA +
Preference number: 5 (lower is better)
Translates to: PSKAEEGLKVRSLCG*LPGAACGGCRGGWE
Trigger: TTCCCAGCCTCCCCGGCAGCCACCACAGGCCGCTCCCGGCAACCATCCACACAGCGACCTGACCTTTAACCCCTCCTCAGCCTTAGAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGAGGGCGGCCATGTTGTaGGGCATGTCCGGTGGGTGC +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSRAAML*GMSGGC
Trigger: GCACCCACCGGACATGCCCAACAACATGGCCGCCCT...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 90 bp TGGGCAGCCACACGGCTGACAACCGTCAGGCAGCCCATGAGGCTCTaGTCAAAGGGCCTCTGGAAGGCTCGAGGGTCTCCACACCAATCC +
Preference number: 5 (lower is better)
Translates to: WAATRLTTVRQPMRL*SKGLWKARGSPHQS
Trigger: GGATTGGTGTGGAGACCCTCGAGCCTTCCAGAGGCCCTTTGAGCAGAGCCTCATGGGCTGCCTGACGGTTGTCAGCCGTGTGGCTGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGAGCTCGTCATTGTGGTaGGCTGGGGGTGGTGGCAGA +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSSSSLW*AGGGGR
Trigger: TCTGCCACCACCCCCAGCCAACCACAATGACGAGCT...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGCTTGTGGGAGGTCTaGTTGTCTCCCCGCTCGATC +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSGLWEV*LSPRSI
Trigger: GATCGAGCGGGGAGACAACAAGACCTCCCACAAGCC...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGTCGAGGGCGGCCATGTaGTTGGGCATGTCCGGTGGG +
Preference number: 5 (lower is better)
Translates to: KAGIGLGQSCKALAASVGSRAAM*LGMSGG
Trigger: CCCACCGGACATGCCCAACAACATGGCCGCCCTCGA...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp CCCCAAAGCCCCCGCTACCAGGGTAGCCAGGTCGGCCGTACATGTTaGGCTGGATATAGGGCTGTGCAGGGCCAGCTTTGGTGGAGAACT +
Preference number: 5 (lower is better)
Translates to: PQSPRYQGSQVGRTC*AGYRAVQGQLWWRT
Trigger: AGTTCTCCACCAAAGCTGGCCCTGCACAGCCCTATATCCAGCCCAACATGTACGGCCGACCTGGCTACCCTGGTAGCGGGGGCTTTGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCTGCTGGGGCATCCTTaGCCCGTGTGTGCCAAAGGG +
Preference number: 5 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLLLGHP*PVCAKG
Trigger: CCCTTTGGCACACACGGGCAAAGGATGCCCCAGCAG...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCAGCCGTAGCTCGTCATaGTGGTTGGCTGGGGGTGGT +
Preference number: 5 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGSRSSS*WLAGGG
Trigger: ACCACCCCCAGCCAACCACAATGACGAGCTACGGCT...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGAGGTGGAACACGTGGTaGCTGACGGCAAGGTTGTGC +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSRWNTW*LTARLC
Trigger: GCACAACCTTGCCGTCAGCAACCACGTGTTCCACCT...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCGGCTTGTGGGAGGTCTaGTTGTCTCCCCGCTCGATC +
Preference number: 5 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGGLWEV*LSPRSI
Trigger: GATCGAGCGGGGAGACAACAAGACCTCCCACAAGCC...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGAGGGCGGCCATGTTGTaGGGCATGTCCGGTGGGTGC +
Preference number: 5 (lower is better)
Translates to: TCLGGSLRKSASGVASGVRAAML*GMSGGC
Trigger: GCACCCACCGGACATGCCCAACAACATGGCCGCCCT...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGTCGAGGGCGGCCATGTaGTTGGGCATGTCCGGTGGG +
Preference number: 5 (lower is better)
Translates to: TCLGGSLRKSASGVASGVSRAAM*LGMSGG
Trigger: CCCACCGGACATGCCCAACAACATGGCCGCCCTCGA...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGTTGGCTCGGCATCCTTaGTCCAGGGTAGTTGGGAGA +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSLARHP*SRVVGR
Trigger: TCTCCCAACTACCCTGGACAAAGGATGCCGAGCCAA...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCCTGTTGACGCTCCCTaGGCTGTAGCTGCTGTAGCT +
Preference number: 5 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSPVDAP*AVAAVA
Trigger: AGCTACAGCAGCTACAGCCAAGGGAGCGTCAACAGG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGAGCCGTAGCTCGTCATaGTGGTTGGCTGGGGGTGGT +
Preference number: 5 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLSRSSS*WLAGGG
Trigger: ACCACCCCCAGCCAACCACAATGACGAGCTACGGCT...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTACGCCATCCTCCCCATaGAGAGTTGTGTTGCCCGAG +
Preference number: 5 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSTPSSP*RVVLPE
Trigger: CTCGGGCAACACAACTCTCAATGGGGAGGATGGCGT...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 90 bp TCCAGTGAAGGTTCCGGCATGTCGGATGCTCCCTGTGCTCCGGCCTaGCCCTCTAAGGCTGAGGAGGGGTTAAAGGTCAGGTCGCTGTGT +
Preference number: 5 (lower is better)
Translates to: SSEGSGMSDAPCAPA*PSKAEEGLKVRSLC
Trigger: ACACAGCGACCTGACCTTTAACCCCTCCTCAGCCTTAGAGGGTCAGGCCGGAGCACAGGGAGCATCCGACATGCCGGAACCTTCACTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp CTGACAACCGTCAGGCAGCCCATGAGGCTCTGCTCAAAGGGCCTCTaGAAGGCTCGAGGGTCTCCACACCAATCCAGCAGCTCTGTAGCA +
Preference number: 5 (lower is better)
Translates to: LTTVRQPMRLCSKGL*KARGSPHQSSSSVA
Trigger: TGCTACAGAGCTGCTGGATTGGTGTGGAGACCCTCGAGCCTTCCAGAGGCCCTTTGAGCAGAGCCTCATGGGCTGCCTGACGGTTGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp GAGGAGGAGCCCCACTGTGATGTAATGGAGGCCCTGCCTGGCTGCTaGGGTGTGGTACGTGCAAACCTTGTTGTATGGAGGGATGGGGCT +
Preference number: 5 (lower is better)
Translates to: EEEPHCDVMEALPGC*GVVRANLVVWRDGA
Trigger: AGCCCCATCCCTCCATACAACAAGGTTTGCACGTACCACACCCCAGCAGCCAGGCAGGGCCTCCATTACATCACAGTGGGGCTCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp GGCCCCCGAGGCCCGGGTTGGTTCATGAATTGGCTGTTATACGCCTaGGTGGGACCCATCTGGAAAGAGGAACACACCGGTCCATACTGG +
Preference number: 5 (lower is better)
Translates to: GPRGPGWFMNWLLYA*VGPIWKEEHTGPYW
Trigger: CCAGTATGGACCGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCACTGCAGACGGTCATaGGTCTGCTGGATGTGCCTG +
Preference number: 5 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLHCRRS*VCWMCL
Trigger: CAGGCACATCCAGCAGACCAATGACCGTCTGCAGTG...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCGCAGCATTGTGGAAGTaGGCGGGGTTCTGTAAGTGC +
Preference number: 5 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGAALWK*AGFCKC
Trigger: GCACTTACAGAACCCCGCCAACTTCCACAATGCTGC...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGGGTTCCAGTCATCTCTGGGGCTCATGGTTTaGAACCGCTTTGAGGGGATG +
Preference number: 5 (lower is better)
Translates to: HYPGLGAGAQASFGFQSSLGLMV*NRFEGM
Trigger: CATCCCCTCAAAGCGGTTCAAAACCATGAGCCCCAG...AGATGACTGGAACCCGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGTACGTGCAAACCTTGTaGTATGGAGGGATGGGGCTG +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSYVQTL*YGGMGL
Trigger: CAGCCCCATCCCTCCATACAACAAGGTTTGCACGTA...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGTCGCTGTGTGGATGGTaGCCGGGAGCGGCCTGTGGT +
Preference number: 5 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWSLCGW*PGAACG
Trigger: ACCACAGGCCGCTCCCGGCAACCATCCACACAGCGA...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 90 bp GGAGGACAGCAGGGCAGCAGACTTGGGGGTGAACTTGTCTCGATTTaGGGCGCACACAGCCAAGAGTCTGTAGCCCAGGTCCAGGTCAAA +
Preference number: 5 (lower is better)
Translates to: GGQQGSRLGGELVSI*GAHSQESVAQVQVK
Trigger: TTTGACCTGGACCTGGGCTACAGACTCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTCACCCCCAAGTCTGCTGCCCTGCTGTCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGATAGGGTTGTTGGCATaGGCCATAGGGTTCCCGAGG +
Preference number: 5 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLIGLLA*AIGFPR
Trigger: CCTCGGGAACCCTATGGCCAATGCCAACAACCCTAT...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp ATTGGTCAGGCCCGAGGGCCCATGGGGAGCAGACCTGTAGCTCTCTGGGATTTAGGAGAACTGTTGCTGTaGCCCTGCGAACTGTGGGGA +
Preference number: 5 (lower is better)
Translates to: IGQARGPMGSRPVALWDLGELLL*PCELWG
Trigger: TCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCC...TAAATCCCAGAGAGCTACAGGTCTGCTCCCCATGGGCCCTCGGGCCTGACCAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGACACTGGAAGGTCGGTTGTCTGGAGTCAGCACACATGGAGGGACCTACAGTCCCCCCGAGGCCCGGGTaGGTTCATGAATTGGCTGTT +
Preference number: 5 (lower is better)
Translates to: GHWKVGCLESAHMEGPTVPPRPG*VHELAV
Trigger: AACAGCCAATTCATGAACCAACCCGGGCCTCGGGGG...GACTGTAGGTCCCTCCATGTGTGCTGACTCCAGACAACCGACCTTCCAGTGTCC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGCTGGTAGTTGTTTCCTaGGCTGCTGTAGTCGTTGGA +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSLVVVS*AAVVVG
Trigger: TCCAACGACTACAGCAGCCAAGGAAACAACTACCAG...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTAACGGAGGGCTCCCTTTGGTGTGGTGCACACACTCTCTGCTCCCCGCAAGGCTACGTGCAAACCTTGTaGTATGGAGGGATGGGGCTG +
Preference number: 5 (lower is better)
Translates to: LTEGSLWCGAHTLCSPQGYVQTL*YGGMGL
Trigger: CAGCCCCATCCCTCCATACAACAAGGTTTGCACGTA...GCCTTGCGGGGAGCAGAGAGTGTGTGCACCACACCAAAGGGAGCCCTCCGTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCTCGCTGTGTGGATGGTaGCCGGGAGCGGCCTGTGGT +
Preference number: 5 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLSLCGW*PGAACG
Trigger: ACCACAGGCCGCTCCCGGCAACCATCCACACAGCGA...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp GTTAGGGGTAGGGTACTGGCCTGGCTGGGTGGGGAACTGGCTGTTTaGTCCATATTGCTGGTTTCCATAGTTGGGCTCTCCCGGGTATGG +
Preference number: 5 (lower is better)
Translates to: VRGRVLAWLGGELAV*SILLVSIVGLSRVW
Trigger: CCATACCCGGGAGAGCCCAACTATGGAAACCAGCAATATGGACCAAACAGCCAGTTCCCCACCCAGCCAGGCCAGTACCCTACCCCTAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp TGGCTGCTGGGGTGTGGTACGTGCAAACCTTGTTGTATGGAGGGATaGGGCTGGTCAGAACTGCCAGCGTGGGGCATAGTTTCCTGCATG +
Preference number: 5 (lower is better)
Translates to: WLLGCGTCKPCCMEG*GWSELPAWGIVSCM
Trigger: CATGCAGGAAACTATGCCCCACGCTGGCAGTTCTGACCAGCCCCATCCCTCCATACAACAAGGTTTGCACGTACCACACCCCAGCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACCACTGCAGACGGTCATaGGTCTGCTGGATGTGCCTG +
Preference number: 5 (lower is better)
Translates to: HLLGEQECGASSGWREKYHCRRS*VCWMCL
Trigger: CAGGCACATCCAGCAGACCAATGACCGTCTGCAGTG...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACGGAGAACTGTTGCTGTaGCCCTGCGAACTGTGGGGA +
Preference number: 5 (lower is better)
Translates to: HLLGEQECGASSGWREKYGELLL*PCELWG
Trigger: TCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCC...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGCTTGTTCTGTGTCTCTaGCAAGGCTGCCACTGTAGC +
Preference number: 5 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLLVLCL*QGCHCS
Trigger: GCTACAGTGGCAGCCTTGCAAGAGACACAGAACAAG...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp AAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTTCTGTGGGGCTTGTTCTGTGTCTCTaGCAAGGCTGCCACTGTAGC +
Preference number: 5 (lower is better)
Translates to: KAGIGLGQSCKALAASVGLVLCL*QGCHCS
Trigger: GCTACAGTGGCAGCCTTGCAAGAGACACAGAACAAG...CCCCACAGAAGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCCCCCCGAGGCCCGGGTaGGTTCATGAATTGGCTGTT +
Preference number: 5 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTPPRPG*VHELAV
Trigger: AACAGCCAATTCATGAACCAACCCGGGCCTCGGGGG...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
58% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCTGCTGGGGCATCCTTaGCCCGTGTGTGCCAAAGGG +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITLLGHP*PVCAKG
Trigger: CCCTTTGGCACACACGGGCAAAGGATGCCCCAGCAG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CTCCAAGGCTTGTCCACTACCCTGGCCTGGGGGCCGGAGCACAGGCTTCTTTCGCCGGAGGAGAAGGTGTaGTTCTGTCCATTAAACTGT +
Preference number: 5 (lower is better)
Translates to: LQGLSTTLAWGPEHRLLSPEEKV*FCPLNC
Trigger: ACAGTTTAATGGACAGAACAACACCTTCTCCTCCGG...CGAAAGAAGCCTGTGCTCCGGCCCCCAGGCCAGGGTAGTGGACAAGCCTTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGAGCTCGTCATTGTGGTaGGCTGGGGGTGGTGGCAGA +
Preference number: 5 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWSSSLW*AGGGGR
Trigger: TCTGCCACCACCCCCAGCCAACCACAATGACGAGCT...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGGTCTGAGTTAAGGAGCCCTCCTCTGCATTGTCTTGGCTCTGGGGAAGGCCCTTTGTGGGAGGTCTTGTaGTCTCCCCGCTCGATCGTG +
Preference number: 5 (lower is better)
Translates to: WSELRSPPLHCLGSGEGPLWEVL*SPRSIV
Trigger: CACGATCGAGCGGGGAGACAACAAGACCTCCCACAA...AGGGCCTTCCCCAGAGCCAAGACAATGCAGAGGAGGGCTCCTTAACTCAGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGGCCTGGATTCCCTCAGCTTGGGTTTGTCTTCCAGGGGCCGTCTTCAGGCTTGTGGTACGTGCAAACCTaGTTGTATGGAGGGATGGGG +
Preference number: 5 (lower is better)
Translates to: GPGFPQLGFVFQGPSSGLWYVQT*LYGGMG
Trigger: CCCCATCCCTCCATACAACAAGGTTTGCACGTACCA...CAAGCCTGAAGACGGCCCCTGGAAGACAAACCCAAGCTGAGGGAATCCAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 90 bp CAAGTTCTTCACACCAGGAGGACAGCAGGGCAGCAGACTTGGGGGTaGACTTGTCTCGATTTGCGGCGCACACAGCCAAGAGTCTGTAGC +
Preference number: 5 (lower is better)
Translates to: QVLHTRRTAGQQTWG*TCLDLRRTQPRVCS
Trigger: GCTACAGACTCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTCACCCCCAAGTCTGCTGCCCTGCTGTCCTCCTGGTGTGAAGAACTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGTCCAGGTCAAACCCTaGTTGGGCAGCCACACGGCT +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITVQVKP*LGSHTA
Trigger: AGCCGTGTGGCTGCCCAACAAGGGTTTGACCTGGAC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp AAATCAGCCTCAGGTGTAGCCTCGGGTGTGAACGGAGAGATGACCAGAGAGGCTAGCAGGGCAGCAGACTaGGGGGTGAACTTGTCTCGA +
Preference number: 5 (lower is better)
Translates to: KSASGVASGVNGEMTREASRAAD*GVNLSR
Trigger: TCGAGACAAGTTCACCCCCAAGTCTGCTGCCCTGCT...AGCCTCTCTGGTCATCTCTCCGTTCACACCCGAGGCTACACCTGAGGCTGATTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAATAGGGTTGTTGGCATaGGCCATAGGGTTCCCGAGG +
Preference number: 5 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEIGLLA*AIGFPR
Trigger: CCTCGGGAACCCTATGGCCAATGCCAACAACCCTAT...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp AAATCAGCCTCAGGTGTAGCCTCGGGTGTGAACGGAGAGATGACCAGAGAGGCTCCTGATGCCATGGGGTaGCCACCTGGATTCATAGGG +
Preference number: 5 (lower is better)
Translates to: KSASGVASGVNGEMTREAPDAMG*PPGFIG
Trigger: CCCTATGAATCCAGGTGGCAACCCCATGGCATCAGG...AGCCTCTCTGGTCATCTCTCCGTTCACACCCGAGGCTACACCTGAGGCTGATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTAGGTGGAACACGTGGTaGCTGACGGCAAGGTTGTGC +
Preference number: 5 (lower is better)
Translates to: GHLKAGIGLGQSCKALAARWNTW*LTARLC
Trigger: GCACAACCTTGCCGTCAGCAACCACGTGTTCCACCT...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCCCATTGAGAGTTGTGTaGCCCGAGGAGGCAGCCACA +
Preference number: 5 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTPLRVV*PEEAAT
Trigger: TGTGGCTGCCTCCTCGGGCAACACAACTCTCAATGG...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTGTGGGCTTCAGGCTCTGTGGTGAACTTGCTGGTGGGCACTTGCCTGGGAGGGATCATCTCCATGACATaGGGCATGATCATCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VWASGSVVNLLVGTCLGGIISMT*GMIIWL
Trigger: CAGCCAGATGATCATGCCCAATGTCATGGAGATGAT...CCCTCCCAGGCAAGTGCCCACCAGCAAGTTCACCACAGAGCCTGAAGCCCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp ATTGGTCAGGCCCGAGGGCCCATGGGGAGCAGACCTGTAGCTCTCTGGGATTTAGACAGGAGGTCATCGTaGCTATTGCTTGGAAGGTCG +
Preference number: 5 (lower is better)
Translates to: IGQARGPMGSRPVALWDLDRRSS*LLLGRS
Trigger: CGACCTTCCAAGCAATAGCAACGATGACCTCCTGTC...TAAATCCCAGAGAGCTACAGGTCTGCTCCCCATGGGCCCTCGGGCCTGACCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS CCA 90 bp GCTCGAGGGTCTCCACACCAATCCAGCAGCTCTGTAGCAGCATTGTaGAAGTTGGCGGGGTTCTGTAAGTGCTGCTTGATGCACTGCAGA +
Preference number: 5 (lower is better)
Translates to: ARGSPHQSSSSVAAL*KLAGFCKCCLMHCR
Trigger: TCTGCAGTGCATCAAGCAGCACTTACAGAACCCCGCCAACTTCCACAATGCTGCTACAGAGCTGCTGGATTGGTGTGGAGACCCTCGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 90 bp GGCTGGGGGTGGTGGCAGAGCACTCATATTTGGCTTGATATCAGGTaGGAAAGGTGGTTTGACATCTTGGCTGGGGGACAGATAGGGAGG +
Preference number: 5 (lower is better)
Translates to: GWGWWQSTHIWLDIR*ERWFDILAGGQIGR
Trigger: CCTCCCTATCTGTCCCCCAGCCAAGATGTCAAACCACCTTTCCCACCTGATATCAAGCCAAATATGAGTGCTCTGCCACCACCCCCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGAGCTCTGTAGCAGCATaGTGGAAGTTGGCGGGGTTC +
Preference number: 5 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWSSVAA*WKLAGF
Trigger: GAACCCCGCCAACTTCCACAATGCTGCTACAGAGCT...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCCCTGATGCCATGGGGTaGCCACCTGGATTCATAGGG +
Preference number: 5 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLPDAMG*PPGFIG
Trigger: CCCTATGAATCCAGGTGGCAACCCCATGGCATCAGG...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCCCTGTTGACGCTCCCTaGGCTGTAGCTGCTGTAGCT +
Preference number: 5 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLPVDAP*AVAAVA
Trigger: AGCTACAGCAGCTACAGCCAAGGGAGCGTCAACAGG...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGGTGGGAAAGGTGGTTaGACATCTTGGCTGGGGGAC +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITGGKGG*TSWLGD
Trigger: GTCCCCCAGCCAAGATGTCAAACCACCTTTCCCACC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCTTGTGGGAGGTCTTGTaGTCTCCCCGCTCGATCGTG +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITLWEVL*SPRSIV
Trigger: CACGATCGAGCGGGGAGACAACAAGACCTCCCACAA...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCCATTGAGAGTTGTGTaGCCCGAGGAGGCAGCCACA +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITPLRVV*PEEAAT
Trigger: TGTGGCTGCCTCCTCGGGCAACACAACTCTCAATGG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 90 bp CGTTCATGGATGTCCCTCCGGGATTCCCATGGGGGAAGTCAAAGTTaGCATGACCCTGGTAGTTGTTTCCTTGGCTGCTGTAGTCGTTGG +
Preference number: 5 (lower is better)
Translates to: RSWMSLRDSHGGSQS*HDPGSCFLGCCSRW
Trigger: CCAACGACTACAGCAGCCAAGGAAACAACTACCAGGGTCATGGCAACTTTGACTTCCCCCATGGGAATCCCGGAGGGACATCCATGAACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCGTCCAGGTCAAACCCTaGTTGGGCAGCCACACGGCT +
Preference number: 5 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGVQVKP*LGSHTA
Trigger: AGCCGTGTGGCTGCCCAACAAGGGTTTGACCTGGAC...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGCCTATGCTGCTTCCCTACCATGTGCCCCTACAGCTGTCTGGGGAAAGGAGAAGGGTTGGTTCATGAATaGGCTGTTATACGCCTGGGT +
Preference number: 5 (lower is better)
Translates to: GLCCFPTMCPYSCLGKGEGLVHE*AVIRLG
Trigger: ACCCAGGCGTATAACAGCCAATTCATGAACCAACCC...TTCTCCTTTCCCCAGACAGCTGTAGGGGCACATGGTAGGGAAGCAGCATAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CACTTGCTGGGTGAGCAGGAGTGTGGAGCGAGCTCTGGATGGAGGGAGAAATACTGGGGAACTGGCTGTTaGGTCCATATTGCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: HLLGEQECGASSGWREKYWGTGC*VHIAGF
Trigger: GAAACCAGCAATATGGACCAAACAGCCAGTTCCCCA...GTATTTCTCCCTCCATCCAGAGCTCGCTCCACACTCCTGCTCACCCAGCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCAGGTGGTTTGACATCTaGGCTGGGGGACAGATAGGG +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITRWFDI*AGGQIG
Trigger: CCCTATCTGTCCCCCAGCCAAGATGTCAAACCACCT...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CAGAGCTCCTTCTTCAGAGCTCCCCGCTGCGGGTCATTTAAAAGCAGGGATTGGGACAGGAGGTCATCGTaGCTATTGCTTGGAAGGTCG +
Preference number: 5 (lower is better)
Translates to: QSSFFRAPRCGSFKSRDWDRRSS*LLLGRS
Trigger: CGACCTTCCAAGCAATAGCAACGATGACCTCCTGTC...CCAATCCCTGCTTTTAAATGACCCGCAGCGGGGAGCTCTGAAGAAGGAGCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGTCCAGATACAATGTTCCTTTCCTTCAGAGCTCCTTCTTCAGAGCTCCCCGCTAGCAGGGCAGCAGACTaGGGGGTGAACTTGTCTCGA +
Preference number: 5 (lower is better)
Translates to: CPDTMFLSFRAPSSELPASRAAD*GVNLSR
Trigger: TCGAGACAAGTTCACCCCCAAGTCTGCTGCCCTGCT...AGCGGGGAGCTCTGAAGAAGGAGCTCTGAAGGAAAGGAACATTGTATCTGGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTGGATTCATAGGGTTGTaGGCATTGGCCATAGGGTTC +
Preference number: 5 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAGFIGL*ALAIGF
Trigger: GAACCCTATGGCCAATGCCAACAACCCTATGAATCC...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCCCTGGATTCATAGGGTaGTTGGCATTGGCCATAGGG +
Preference number: 5 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLPGFIG*LALAIG
Trigger: CCCTATGGCCAATGCCAACAACCCTATGAATCCAGG...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTGGGTTGGTTCATGAATaGGCTGTTATACGCCTGGGT +
Preference number: 5 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAGLVHE*AVIRLG
Trigger: ACCCAGGCGTATAACAGCCAATTCATGAACCAACCC...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TCTCAACTCGAGCACAGCCGCCTCTTCTGCTCCTCTCTCATCTGTACAAATAGCTTGGCTCGGCATCCTTaGTCCAGGGTAGTTGGGAGA +
Preference number: 5 (lower is better)
Translates to: SQLEHSRLFCSSLICTNSLARHP*SRVVGR
Trigger: TCTCCCAACTACCCTGGACAAAGGATGCCGAGCCAA...GCTATTTGTACAGATGAGAGAGGAGCAGAAGAGGCGGCTGTGCTCGAGTTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAAAGGTGGTTTGACATCTaGGCTGGGGGACAGATAGGG +
Preference number: 5 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGERWFDI*AGGQIG
Trigger: CCCTATCTGTCCCCCAGCCAAGATGTCAAACCACCT...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCGGTGGGAAAGGTGGTTaGACATCTTGGCTGGGGGAC +
Preference number: 5 (lower is better)
Translates to: HRRREQRIYRWDSCERTTGGKGG*TSWLGD
Trigger: GTCCCCCAGCCAAGATGTCAAACCACCTTTCCCACC...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCACGCCATCCTCCCCATaGAGAGTTGTGTTGCCCGAG +
Preference number: 5 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGTPSSP*RVVLPE
Trigger: CTCGGGCAACACAACTCTCAATGGGGAGGATGGCGT...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 90 bp TCAAACTCGGAGTGTTGGATGGCGTTCAGGATCCCCCACATGTACTaGTCCACTTCCAGACCCTCGAGCAGAGCAGTTTTATTGCACACG +
Preference number: 5 (lower is better)
Translates to: SNSECWMAFRIPHMY*STSRPSSRAVLLHT
Trigger: CGTGTGCAATAAAACTGCTCTGCTCGAGGGTCTGGAAGTGGATCAGTACATGTGGGGGATCCTGAACGCCATCCAACACTCCGAGTTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCTTCTGTAAGTGCTGCTaGATGCACTGCAGACGGTCA +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITFCKCC*MHCRRS
Trigger: TGACCGTCTGCAGTGCATCAAGCAGCACTTACAGAA...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCACTCTTCTGTAAGTGCTGCTaGATGCACTGCAGACGGTCA +
Preference number: 5 (lower is better)
Translates to: CVCVCVRVLPHCCKLSPLFCKCC*MHCRRS
Trigger: TGACCGTCTGCAGTGCATCAAGCAGCACTTACAGAA...GAGTGGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CATCGGAGAAGGGAGCAAAGAATTTACAGATGGGACTCATGTGAGCGGACAACCAGCTCTGTAGCAGCATaGTGGAAGTTGGCGGGGTTC +
Preference number: 5 (lower is better)
Translates to: HRRREQRIYRWDSCERTTSSVAA*WKLAGF
Trigger: GAACCCCGCCAACTTCCACAATGCTGCTACAGAGCT...GGTTGTCCGCTCACATGAGTCCCATCTGTAAATTCTTTGCTCCCTTCTCCGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GGTCATTTAAAAGCAGGGATTGGCTTGGGGCAAAGCTGCAAGGCCCTGGCTGCTCCGGAGGAGAAGGTGTaGTTCTGTCCATTAAACTGT +
Preference number: 5 (lower is better)
Translates to: GHLKAGIGLGQSCKALAAPEEKV*FCPLNC
Trigger: ACAGTTTAATGGACAGAACAACACCTTCTCCTCCGG...AGCAGCCAGGGCCTTGCAGCTTTGCCCCAAGCCAATCCCTGCTTTTAAATGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCCTGGGGCTCATGGTTTaGAACCGCTTTGAGGGGATG +
Preference number: 5 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGLGLMV*NRFEGM
Trigger: CATCCCCTCAAAGCGGTTCAAAACCATGAGCCCCAG...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTGGTGTGTGTGTGTGTGTGTGCGTGTCCTTCCTCACTGCTGCAAACTGTCACCATCATCTCCATGACATaGGGCATGATCATCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VVCVCVCACPSSLLQTVTIISMT*GMIIWL
Trigger: CAGCCAGATGATCATGCCCAATGTCATGGAGATGAT...GGTGACAGTTTGCAGCAGTGAGGAAGGACACGCACACACACACACACACACCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCCTGGTAGTTGTTTCCTaGGCTGCTGTAGTCGTTGGA +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITLVVVS*AAVVVG
Trigger: TCCAACGACTACAGCAGCCAAGGAAACAACTACCAG...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAATGGTACGTGCAAACCTaGTTGTATGGAGGGATGGGG +
Preference number: 5 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGEWYVQT*LYGGMG
Trigger: CCCCATCCCTCCATACAACAAGGTTTGCACGTACCA...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCCCTGGATTCATAGGGTaGTTGGCATTGGCCATAGGG +
Preference number: 5 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGPGFIG*LALAIG
Trigger: CCCTATGGCCAATGCCAACAACCCTATGAATCCAGG...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp ACTTGCCTGGGAGGGAGCCTTAGGAAATCAGCCTCAGGTGTAGCCTCGGGTGTGTACTGGTTTATATCCTaGTTCTGTGTCTCTTGCAAG +
Preference number: 5 (lower is better)
Translates to: TCLGGSLRKSASGVASGVYWFIS*FCVSCK
Trigger: CTTGCAAGAGACACAGAACAAGGATATAAACCAGTA...CACACCCGAGGCTACACCTGAGGCTGATTTCCTAAGGCTCCCTCCCAGGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp TTTACAGATGGGACTCATGTGAGCGGACAACCTGGCATCACCACAGGCATCACCGCTGTTTGGTCCATATaGCTGGTTTCCATAGTTGGG +
Preference number: 5 (lower is better)
Translates to: FTDGTHVSGQPGITTGITAVWSI*LVSIVG
Trigger: CCCAACTATGGAAACCAGCAATATGGACCAAACAGC...GGTGATGCCTGTGGTGATGCCAGGTTGTCCGCTCACATGAGTCCCATCTGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp CATTTCTCTGGAAGGAGACATTTCCGGAGTGTGGGCTTCAGGCTCTGTGGTGAATGGGGAACTGGCTGTTaGGTCCATATTGCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: HFSGRRHFRSVGFRLCGEWGTGC*VHIAGF
Trigger: GAAACCAGCAATATGGACCAAACAGCCAGTTCCCCA...TTCACCACAGAGCCTGAAGCCCACACTCCGGAAATGTCTCCTTCCAGAGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GAGGTTACTATGGCTCCAAGTTGTTGTAAGAAAGGACTGAGGATCTTTCCAGAGGGATTCATAGGGTTGTaGGCATTGGCCATAGGGTTC +
Preference number: 5 (lower is better)
Translates to: EVTMAPSCCKKGLRIFPEGFIGL*ALAIGF
Trigger: GAACCCTATGGCCAATGCCAACAACCCTATGAATCC...CTCTGGAAAGATCCTCAGTCCTTTCTTACAACAACTTGGAGCCATAGTAACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS-3UTR CAA 90 bp GTCACCTTTCTGGTTCAATCTATATTAAGAGTGCCAGGGAGCACAGAGGGAGGCTACTGGTTTATATCCTaGTTCTGTGTCTCTTGCAAG +
Preference number: 5 (lower is better)
Translates to: VTFLVQSILRVPGSTEGGYWFIS*FCVSCK
Trigger: CTTGCAAGAGACACAGAACAAGGATATAAACCAGTA...GCCTCCCTCTGTGCTCCCTGGCACTCTTAATATAGATTGAACCAGAAAGGTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 72 bp TGCCCATGGGAGGGCCGCTCATGCCCGAGGGTGTCATaGCAGCTGCCATGCCGGCAGGGTTCAGGCTGCCCC +
Preference number: 6 (lower is better)
Translates to: CPWEGRSCPRVS*QLPCRQGSGCP
Trigger: GGGGCAGCCTGAACCCTGCCGGCATGGCAGCTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp TGTGTGCCAAAGGGGCTGATGCCGGGTGGTCGGGGCTaGTTCATGCCCATGGGAGGGCCGCTCATGCCCGAG +
Preference number: 6 (lower is better)
Translates to: CVPKGLMPGGRG*FMPMGGPLMPE
Trigger: CTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCACCCGGCATCAGCCCCTTTGGCACACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp GAGGAGGGGTTAAAGGTCAGGTCGCTGTGTGGATGGTaGCCGGGAGCGGCCTGTGGTGGCTGCCGGGGAGGC +
Preference number: 6 (lower is better)
Translates to: EEGLKVRSLCGW*PGAACGGCRGG
Trigger: GCCTCCCCGGCAGCCACCACAGGCCGCTCCCGGCAACCATCCACACAGCGACCTGACCTTTAACCCCTCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp GGAGGCAGGCCCCCGAGGCCCGGGTTGGTTCATGAATaGGCTGTTATACGCCTGGGTGGGACCCATCGGTCC +
Preference number: 6 (lower is better)
Translates to: GGRPPRPGLVHE*AVIRLGGTHRS
Trigger: GGACCGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007961.15
CDS CAA 90 bp TCTAAGGCTGAGGAGGGGTTAAAGGTCAGGTCGCTGTGTGGATGGTaGCCGGGAGCGGCCTGTGGTGGCTGCCGGGGAGGCTGGGAAGGA +
Preference number: 6 (lower is better)
Translates to: SKAEEGLKVRSLCGW*PGAACGGCRGGWEG
Trigger: TCCTTCCCAGCCTCCCCGGCAGCCACCACAGGCCGCTCCCGGCAACCATCCACACAGCGACCTGACCTTTAACCCCTCCTCAGCCTTAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp CCATGGAGGCAGGCCCCCGAGGCCCGGGTTGGTTCATaGATTGGCTGTTATACGCCTGGGTGGGACCCATCG +
Preference number: 6 (lower is better)
Translates to: PWRQAPEARVGS*IGCYTPGWDPS
Trigger: CGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTCCATGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007961.15
CDS TCA 72 bp AGGGCTCCAGAACCACGCCATCCCGCACGGGGAATGTaGGCCGTAGCTCGTCATTGTGGTTGGCTGGGGGTG +
Preference number: 6 (lower is better)
Translates to: RAPEPRHPARGM*AVARHCGWLGV
Trigger: CACCCCCAGCCAACCACAATGACGAGCTACGGCTCACATTCCCCGTGCGGGATGGCGTGGTTCTGGAGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp CCCCGCTACCAGGGTAGCCAGGTCGGCCGTACATGTTaGGCTGGATATAGGGCTGTGCAGGGCCAGCTTTGG +
Preference number: 6 (lower is better)
Translates to: PRYQGSQVGRTC*AGYRAVQGQLW
Trigger: CCAAAGCTGGCCCTGCACAGCCCTATATCCAGCCCAACATGTACGGCCGACCTGGCTACCCTGGTAGCGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp GAGGCAGGCCCCCGAGGCCCGGGTTGGTTCATGAATTaGCTGTTATACGCCTGGGTGGGACCCATCGGTCCA +
Preference number: 6 (lower is better)
Translates to: EAGPRGPGWFMN*LLYAWVGPIGP
Trigger: TGGACCGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007961.15
CDS CAA 90 bp GGCGCACACAGCCAAGAGTCTGTAGCCCAGGTCCAGGTCAAACCCTaGTTGGGCAGCCACACGGCTGACAACCGTCAGGCAGCCCATGAG +
Preference number: 6 (lower is better)
Translates to: GAHSQESVAQVQVKP*LGSHTADNRQAAHE
Trigger: CTCATGGGCTGCCTGACGGTTGTCAGCCGTGTGGCTGCCCAACAAGGGTTTGACCTGGACCTGGGCTACAGACTCTTGGCTGTGTGCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp GACTCTGGGATGTGTTGGTCACTCCCCACACCGTGGTaGCCACGGAGAGGGAGCCGGGAGGCTGATTGGTGT +
Preference number: 6 (lower is better)
Translates to: DSGMCWSLPTPW*PRRGSREADWC
Trigger: ACACCAATCAGCCTCCCGGCTCCCTCTCCGTGGTCACCACGGTGTGGGGAGTGACCAACACATCCCAGAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp GGTTCCGGCATGTCGGATGCTCCCTGTGCTCCGGCCTaGCCCTCTAAGGCTGAGGAGGGGTTAAAGGTCAGG +
Preference number: 6 (lower is better)
Translates to: GSGMSDAPCAPA*PSKAEEGLKVR
Trigger: CCTGACCTTTAACCCCTCCTCAGCCTTAGAGGGTCAGGCCGGAGCACAGGGAGCATCCGACATGCCGGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp CCATGGAGGCAGGCCCCCGAGGCCCGGGTTGGTTCATaGATTGGCTGTTATACGCCTGGGTGGGACCCATCT +
Preference number: 6 (lower is better)
Translates to: PWRQAPEARVGS*IGCYTPGWDPS
Trigger: AGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTCCATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS CCA 72 bp GTCAGGCAGCCCATGAGGCTCTGCTCAAAGGGCCTCTaGAAGGCTCGAGGGTCTCCACACCAATCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: VRQPMRLCSKGL*KARGSPHQSSS
Trigger: GCTGCTGGATTGGTGTGGAGACCCTCGAGCCTTCCAGAGGCCCTTTGAGCAGAGCCTCATGGGCTGCCTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp CACAGGAACCGGCCTGGGAGGCCTGTTGACGCTCCCTaGGCTGTAGCTGCTGTAGCTGCTTCCGGAGGAGAA +
Preference number: 6 (lower is better)
Translates to: HRNRPGRPVDAP*AVAAVAASGGE
Trigger: TTCTCCTCCGGAAGCAGCTACAGCAGCTACAGCCAAGGGAGCGTCAACAGGCCTCCCAGGCCGGTTCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp GGAGGCAGGCCCCCGAGGCCCGGGTTGGTTCATGAATaGGCTGTTATACGCCTGGGTGGGACCCATCTGGAA +
Preference number: 6 (lower is better)
Translates to: GGRPPRPGLVHE*AVIRLGGTHLE
Trigger: TTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS CAA 90 bp GCACACAGCCAAGAGTCTGTAGCCCAGGTCCAGGTCAAACCCTTGTaGGGCAGCCACACGGCTGACAACCGTCAGGCAGCCCATGAGGCT +
Preference number: 6 (lower is better)
Translates to: AHSQESVAQVQVKPL*GSHTADNRQAAHEA
Trigger: AGCCTCATGGGCTGCCTGACGGTTGTCAGCCGTGTGGCTGCCCAACAAGGGTTTGACCTGGACCTGGGCTACAGACTCTTGGCTGTGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp CCTTTGTCCAGGGTAGTTGGGAGATGTGAGTGGCCTTaGGGGGTTAGGGGTAGGGTACTGGCCTGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: PLSRVVGRCEWP*GVRGRVLAWLG
Trigger: ACCCAGCCAGGCCAGTACCCTACCCCTAACCCCCCAAGGCCACTCACATCTCCCAACTACCCTGGACAAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp GAGGCAGGCCCCCGAGGCCCGGGTTGGTTCATGAATTaGCTGTTATACGCCTGGGTGGGACCCATCTGGAAA +
Preference number: 6 (lower is better)
Translates to: EAGPRGPGWFMN*LLYAWVGPIWK
Trigger: TTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS CAA 72 bp CAAGAGTCTGTAGCCCAGGTCCAGGTCAAACCCTTGTaGGGCAGCCACACGGCTGACAACCGTCAGGCAGCC +
Preference number: 6 (lower is better)
Translates to: QESVAQVQVKPL*GSHTADNRQAA
Trigger: GGCTGCCTGACGGTTGTCAGCCGTGTGGCTGCCCAACAAGGGTTTGACCTGGACCTGGGCTACAGACTCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp CCCTGCCTGGCTGCTGGGGTGTGGTACGTGCAAACCTaGTTGTATGGAGGGATGGGGCTGGTCAGAACTGCC +
Preference number: 6 (lower is better)
Translates to: PCLAAGVWYVQT*LYGGMGLVRTA
Trigger: GGCAGTTCTGACCAGCCCCATCCCTCCATACAACAAGGTTTGCACGTACCACACCCCAGCAGCCAGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 90 bp GGGCTGGATATAGGGCTGTGCAGGGCCAGCTTTGGTGGAGAACTGTaGCTGTTGCCCTGCGAACTGTGGGGAGTTGATGCCGGGGTTGCT +
Preference number: 6 (lower is better)
Translates to: GLDIGLCRASFGGEL*LLPCELWGVDAGVA
Trigger: AGCAACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACAGCCCTATATCCAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp CACACCAGGAGGACAGCAGGGCAGCAGACTTGGGGGTaGACTTGTCTCGATTTGCGGCGCACACAGCCAAGA +
Preference number: 6 (lower is better)
Translates to: HTRRTAGQQTWG*TCLDLRRTQPR
Trigger: TCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTCACCCCCAAGTCTGCTGCCCTGCTGTCCTCCTGGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 72 bp CAGGGCAGCAGACTTGGGGGTGAACTTGTCTCGATTTaGGGCGCACACAGCCAAGAGTCTGTAGCCCAGGTC +
Preference number: 6 (lower is better)
Translates to: QGSRLGGELVSI*GAHSQESVAQV
Trigger: GACCTGGGCTACAGACTCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTCACCCCCAAGTCTGCTGCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 72 bp TGTGCAGGGCCAGCTTTGGTGGAGAACTGTTGCTGTTaGCCTGCGAACTGTGGGGAGTTGATGCCGGGGTTG +
Preference number: 6 (lower is better)
Translates to: CAGPALVENCCC*PANCGELMPGL
Trigger: CAACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp TGGGCTGGATATAGGGCTGTGCAGGGCCAGCTTTGGTaGAGAACTGTTGCTGTTGCCCTGCGAACTGTGGGG +
Preference number: 6 (lower is better)
Translates to: WAGYRAVQGQLW*RTVAVALRTVG
Trigger: CCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACAGCCCTATATCCAGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp CGCTTTGAGGGGATGCCATCGGGGTCATCCTTGATGTaGAGGTCTGACTTGATGGGTACTGGCCGCCAGCTG +
Preference number: 6 (lower is better)
Translates to: RFEGMPSGSSLM*RSDLMGTGRQL
Trigger: CAGCTGGCGGCCAGTACCCATCAAGTCAGACCTCCACATCAAGGATGACCCCGATGGCATCCCCTCAAAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp AGCCAAGAGTCTGTAGCCCAGGTCCAGGTCAAACCCTaGTTGGGCAGCCACACGGCTGACAACCGTCAGGCA +
Preference number: 6 (lower is better)
Translates to: SQESVAQVQVKP*LGSHTADNRQA
Trigger: TGCCTGACGGTTGTCAGCCGTGTGGCTGCCCAACAAGGGTTTGACCTGGACCTGGGCTACAGACTCTTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp CCGGGGTTGCTGGTGCTCATGCCTGATGCCATGGGGTaGCCACCTGGATTCATAGGGTTGTTGGCATTGGCC +
Preference number: 6 (lower is better)
Translates to: PGLLVLMPDAMG*PPGFIGLLALA
Trigger: GGCCAATGCCAACAACCCTATGAATCCAGGTGGCAACCCCATGGCATCAGGCATGAGCACCAGCAACCCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp GAGAACTGTTGCTGTTGCCCTGCGAACTGTGGGGAGTaGATGCCGGGGTTGCTGGTGCTCATGCCTGATGCC +
Preference number: 6 (lower is better)
Translates to: ENCCCCPANCGE*MPGLLVLMPDA
Trigger: GGCATCAGGCATGAGCACCAGCAACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp CTGTGCAGGGCCAGCTTTGGTGGAGAACTGTTGCTGTaGCCCTGCGAACTGTGGGGAGTTGATGCCGGGGTT +
Preference number: 6 (lower is better)
Translates to: LCRASFGGELLL*PCELWGVDAGV
Trigger: AACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp TGGGTACTGTCCGGTGCTGGGTTGGCTCGGCATCCTTaGTCCAGGGTAGTTGGGAGATGTGAGTGGCCTTGG +
Preference number: 6 (lower is better)
Translates to: WVLSGAGLARHP*SRVVGRCEWPW
Trigger: CCAAGGCCACTCACATCTCCCAACTACCCTGGACAAAGGATGCCGAGCCAACCCAGCACCGGACAGTACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp TGCCTGGCTGCTGGGGTGTGGTACGTGCAAACCTTGTaGTATGGAGGGATGGGGCTGGTCAGAACTGCCAGC +
Preference number: 6 (lower is better)
Translates to: CLAAGVWYVQTL*YGGMGLVRTAS
Trigger: GCTGGCAGTTCTGACCAGCCCCATCCCTCCATACAACAAGGTTTGCACGTACCACACCCCAGCAGCCAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 90 bp GATATAGGGCTGTGCAGGGCCAGCTTTGGTGGAGAACTGTTGCTGTaGCCCTGCGAACTGTGGGGAGTTGATGCCGGGGTTGCTGGTGCT +
Preference number: 6 (lower is better)
Translates to: DIGLCRASFGGELLL*PCELWGVDAGVAGA
Trigger: AGCACCAGCAACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACAGCCCTATATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp AGAACTGTTGCTGTTGCCCTGCGAACTGTGGGGAGTTaGTGCCGGGGTTGCTGGTGCTCATGCCTGATGCCA +
Preference number: 6 (lower is better)
Translates to: RTVAVALRTVGS*CRGCWCSCLMP
Trigger: TGGCATCAGGCATGAGCACCAGCAACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp TTTGGTGGAGAACTGTTGCTGTTGCCCTGCGAACTGTaGGGAGTTGATGCCGGGGTTGCTGGTGCTCATGCC +
Preference number: 6 (lower is better)
Translates to: FGGELLLLPCEL*GVDAGVAGAHA
Trigger: GGCATGAGCACCAGCAACCCCGGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp ATAGGGCTGTGCAGGGCCAGCTTTGGTGGAGAACTGTaGCTGTTGCCCTGCGAACTGTGGGGAGTTGATGCC +
Preference number: 6 (lower is better)
Translates to: IGLCRASFGGEL*LLPCELWGVDA
Trigger: GGCATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACAGCCCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp GCCTGGCTGGGTGGGGAACTGGCTGTTTGGTCCATATaGCTGGTTTCCATAGTTGGGCTCTCCCGGGTATGG +
Preference number: 6 (lower is better)
Translates to: AWLGGELAVWSI*LVSIVGLSRVW
Trigger: CCATACCCGGGAGAGCCCAACTATGGAAACCAGCAATATGGACCAAACAGCCAGTTCCCCACCCAGCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 90 bp GAGTTGATGCCGGGGTTGCTGGTGCTCATGCCTGATGCCATGGGGTaGCCACCTGGATTCATAGGGTTGTTGGCATTGGCCATAGGGTTC +
Preference number: 6 (lower is better)
Translates to: ELMPGLLVLMPDAMG*PPGFIGLLALAIGF
Trigger: GAACCCTATGGCCAATGCCAACAACCCTATGAATCCAGGTGGCAACCCCATGGCATCAGGCATGAGCACCAGCAACCCCGGCATCAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp AGGGTACTGGCCTGGCTGGGTGGGGAACTGGCTGTTTaGTCCATATTGCTGGTTTCCATAGTTGGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: RVLAWLGGELAV*SILLVSIVGLS
Trigger: GGAGAGCCCAACTATGGAAACCAGCAATATGGACCAAACAGCCAGTTCCCCACCCAGCCAGGCCAGTACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp GGTACGTGCAAACCTTGTTGTATGGAGGGATGGGGCTaGTCAGAACTGCCAGCGTGGGGCATAGTTTCCTGC +
Preference number: 6 (lower is better)
Translates to: GTCKPCCMEGWG*SELPAWGIVSC
Trigger: GCAGGAAACTATGCCCCACGCTGGCAGTTCTGACCAGCCCCATCCCTCCATACAACAAGGTTTGCACGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp GGGTGTGGTACGTGCAAACCTTGTTGTATGGAGGGATaGGGCTGGTCAGAACTGCCAGCGTGGGGCATAGTT +
Preference number: 6 (lower is better)
Translates to: GCGTCKPCCMEG*GWSELPAWGIV
Trigger: AACTATGCCCCACGCTGGCAGTTCTGACCAGCCCCATCCCTCCATACAACAAGGTTTGCACGTACCACACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp GGCCCGGGTTGGTTCATGAATTGGCTGTTATACGCCTaGGTGGGACCCATCTGGAAAGAGGAACACACCGGT +
Preference number: 6 (lower is better)
Translates to: GPGWFMNWLLYA*VGPIWKEEHTG
Trigger: ACCGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCATGAACCAACCCGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8
CDS CAA 72 bp TTGAACCGCTTTGAGGGGATGCCATCGGGGTCATCCTaGATGTGGAGGTCTGACTTGATGGGTACTGGCCGC +
Preference number: 6 (lower is better)
Translates to: LNRFEGMPSGSS*MWRSDLMGTGR
Trigger: GCGGCCAGTACCCATCAAGTCAGACCTCCACATCAAGGATGACCCCGATGGCATCCCCTCAAAGCGGTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 90 bp GGGTCTCCACACCAATCCAGCAGCTCTGTAGCAGCATTGTGGAAGTaGGCGGGGTTCTGTAAGTGCTGCTTGATGCACTGCAGACGGTCA +
Preference number: 6 (lower is better)
Translates to: GSPHQSSSSVAALWK*AGFCKCCLMHCRRS
Trigger: TGACCGTCTGCAGTGCATCAAGCAGCACTTACAGAACCCCGCCAACTTCCACAATGCTGCTACAGAGCTGCTGGATTGGTGTGGAGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 90 bp AAGGCTCGAGGGTCTCCACACCAATCCAGCAGCTCTGTAGCAGCATaGTGGAAGTTGGCGGGGTTCTGTAAGTGCTGCTTGATGCACTGC +
Preference number: 6 (lower is better)
Translates to: KARGSPHQSSSSVAA*WKLAGFCKCCLMHC
Trigger: GCAGTGCATCAAGCAGCACTTACAGAACCCCGCCAACTTCCACAATGCTGCTACAGAGCTGCTGGATTGGTGTGGAGACCCTCGAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 72 bp AAGTTGGCGGGGTTCTGTAAGTGCTGCTTGATGCACTaGAGACGGTCATTGGTCTGCTGGATGTGCCTGTCC +
Preference number: 6 (lower is better)
Translates to: KLAGFCKCCLMH*RRSLVCWMCLS
Trigger: GGACAGGCACATCCAGCAGACCAATGACCGTCTGCAGTGCATCAAGCAGCACTTACAGAACCCCGCCAACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS GCA 72 bp ATGTCCCTCCGGGATTCCCATGGGGGAAGTCAAAGTTaGCATGACCCTGGTAGTTGTTTCCTTGGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: MSLRDSHGGSQS*HDPGSCFLGCC
Trigger: ACAGCAGCCAAGGAAACAACTACCAGGGTCATGGCAACTTTGACTTCCCCCATGGGAATCCCGGAGGGACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 72 bp CACCAATCCAGCAGCTCTGTAGCAGCATTGTGGAAGTaGGCGGGGTTCTGTAAGTGCTGCTTGATGCACTGC +
Preference number: 6 (lower is better)
Translates to: HQSSSSVAALWK*AGFCKCCLMHC
Trigger: GCAGTGCATCAAGCAGCACTTACAGAACCCCGCCAACTTCCACAATGCTGCTACAGAGCTGCTGGATTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS TCA 72 bp GAGTGTTGGATGGCGTTCAGGATCCCCCACATGTACTaGTCCACTTCCAGACCCTCGAGCAGAGCAGTTTTA +
Preference number: 6 (lower is better)
Translates to: ECWMAFRIPHMY*STSRPSSRAVL
Trigger: TAAAACTGCTCTGCTCGAGGGTCTGGAAGTGGATCAGTACATGTGGGGGATCCTGAACGCCATCCAACACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CAA 90 bp ACTCATATTTGGCTTGATATCAGGTGGGAAAGGTGGTTTGACATCTaGGCTGGGGGACAGATAGGGAGGTATGCTGCTCCCGGGCGTCAT +
Preference number: 6 (lower is better)
Translates to: THIWLDIRWERWFDI*AGGQIGRYAAPGRH
Trigger: ATGACGCCCGGGAGCAGCATACCTCCCTATCTGTCCCCCAGCCAAGATGTCAAACCACCTTTCCCACCTGATATCAAGCCAAATATGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp TGGTGGCAGAGCACTCATATTTGGCTTGATATCAGGTaGGAAAGGTGGTTTGACATCTTGGCTGGGGGACAG +
Preference number: 6 (lower is better)
Translates to: WWQSTHIWLDIR*ERWFDILAGGQ
Trigger: CTGTCCCCCAGCCAAGATGTCAAACCACCTTTCCCACCTGATATCAAGCCAAATATGAGTGCTCTGCCACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007961.15
ENSMUST00000162645.8
CDS CCA 72 bp ATGAATTGGCTGTTATACGCCTGGGTGGGACCCATCTaGAAAGAGGAACACACCGGTCCATACTGGTTTATA +
Preference number: 6 (lower is better)
Translates to: MNWLLYAWVGPI*KEEHTGPYWFI
Trigger: TATAAACCAGTATGGACCGGTGTGTTCCTCTTTCCAGATGGGTCCCACCCAGGCGTATAACAGCCAATTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162645.8