Pregenerated sensors for ZMAT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001383Ensembl transcript IDs: ENSMUST00000001419.10
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCACACACACATTGACCCAGGCAGAAATCACATGCATGCACAAGTaGGTAGAGAACCGCGGGGTGGAATGGGAGGAAGAGCTGGGTCAA | + |
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Preference number: 1 (lower is better) Translates to: PTHTLTQAEITCMHK*VENRGVEWEEELGQ Trigger: TTGACCCAGCTCTTCCTCCCATTCCACCCCGCGGTTCTCTACCCACTTGTGCATGCATGTGATTTCTGCCTGGGTCAATGTGTGTGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR TCA 90 bp | GCACTGAGGAAACCAAGAACATTAGGTCTCAGGGCATCAATGCTCTaGGATTCTAGCTCAGGTCCCCTCTTTGTGACATATCATGCACAC | + |
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Preference number: 1 (lower is better) Translates to: ALRKPRTLGLRASML*DSSSGPLFVTYHAH Trigger: GTGTGCATGATATGTCACAAAGAGGGGACCTGAGCTAGAATCTCAGAGCATTGATGCCCTGAGACCTAATGTTCTTGGTTTCCTCAGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR TCA 90 bp | ACACATTTAATCTCAGCACTGGAGAAGCTGAGGCAGGCAGATATCTaGGTTCAAGACCAGTCAAGTGGGACCCTGTCACAAAAACCCCAA | + |
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Preference number: 1 (lower is better) Translates to: THLISALEKLRQADI*VQDQSSGTLSQKPQ Trigger: TTGGGGTTTTTGTGACAGGGTCCCACTTGACTGGTCTTGAACTCAGATATCTGCCTGCCTCAGCTTCTCCAGTGCTGAGATTAAATGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR CCA 90 bp | GGGGTGGAATGGGAGGAAGAGCTGGGTCAAGGGTATACCAGTACCCGCAGACTGGAGGTCCTTCTTTATTaGGAACACAGATGGGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: GVEWEEELGQGYTSTRRLEVLLY*EHRWAE Trigger: CTCTGCCCATCTGTGTTCCCAATAAAGAAGGACCTC...CAGTCTGCGGGTACTGGTATACCCTTGACCCAGCTCTTCCTCCCATTCCACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | TTACAAGACTTGTATAACTGTCACCTGTGCCCTCATCCCCATCTCGCCCTTGAACAACAGTGCCAAGCCTaGATAACCCAGTGCCCGCCC | + |
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Preference number: 2 (lower is better) Translates to: LQDLYNCHLCPHPHLALEQQCQA*ITQCPP Trigger: GGGCGGGCACTGGGTTATTCAGGCTTGGCACTGTTG...TTCAAGGGCGAGATGGGGATGAGGGCACAGGTGACAGTTATACAAGTCTTGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR GCA 90 bp | GAGGGAGGTCCTTCTTTATTGGGAACACAGATGGGCAGAGGTTCTGTGACTCCACCCACCCTCGAGCCCTaGCCATTAACACTCTTAAGA | + |
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Preference number: 2 (lower is better) Translates to: EGGPSLLGTQMGRGSVTPPTLEP*PLTLLR Trigger: TCTTAAGAGTGTTAATGGGCAGGGCTCGAGGGTGGG...TGGAGTCACAGAACCTCTGCCCATCTGTGTTCCCAATAAAGAAGGACCTCCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR CCA 90 bp | CAAAACTTACCTAGCTCATCATCAACAGTGCCAAGCCTGAATAACCCAGTGCCCACATGCATGCACAAGTaGGTAGAGAACCGCGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: QNLPSSSSTVPSLNNPVPTCMHK*VENRGV Trigger: CACCCCGCGGTTCTCTACCCACTTGTGCATGCATGT...GGGCACTGGGTTATTCAGGCTTGGCACTGTTGATGATGAGCTAGGTAAGTTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 90 bp | GGGGGATATGGGGAAAGCAGTCTCAAAGAGGGAGGTCCTTCTTTATaGGGAACACAGATGGGCAGAGGTTCTGTGACTCCAGTAATGTAC | + |
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Preference number: 2 (lower is better) Translates to: GGYGESSLKEGGPSL*GTQMGRGSVTPVMY Trigger: GTACATTACTGGAGTCACAGAACCTCTGCCCATCTGTGTTCCCAATAAAGAAGGACCTCCCTCTTTGAGACTGCTTTCCCCATATCCCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | ACTGCACATGTTGAACAGTGTCTGAGAACCGGGGTCTCCCAGAGTGAGAGCTTTCAGGTCCCCTCTTTGTaGCATATCATGCACACATAC | + |
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Preference number: 2 (lower is better) Translates to: TAHVEQCLRTGVSQSESFQVPSL*HIMHTY Trigger: GTATGTGTGCATGATATGTCACAAAGAGGGGACCTG...AAAGCTCTCACTCTGGGAGACCCCGGTTCTCAGACACTGTTCAACATGTGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | GGGTGGGAAGAGGAAGATATTCTTGATGTAAGAACATGTGGGGCAGGGAATGATAGGGCATCAATGCTCTaGGATTCTAGCTCAGGTCCC | + |
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Preference number: 2 (lower is better) Translates to: GWEEEDILDVRTCGAGNDRASML*DSSSGP Trigger: GGGACCTGAGCTAGAATCTCAGAGCATTGATGCCCT...ATCATTCCCTGCCCCACATGTTCTTACATCAAGAATATCTTCCTCTTCCCACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR GCA 90 bp | GCCCTCATCCCCATCTCGCCCTTGAATTCCTTAGACAAGGCACAGTACGTGATCCTTTGTGACATATCATaGACACATACCCACACACAC | + |
|
Preference number: 2 (lower is better) Translates to: ALIPISPLNSLDKAQYVILCDIS*THTHTH Trigger: GTGTGTGTGGGTATGTGTGCATGATATGTCACAAAG...GATCACGTACTGTGCCTTGTCTAAGGAATTCAAGGGCGAGATGGGGATGAGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | ATAACTGTCACCTGTGCCCTCATCCCCATCTCGCCCTTGAATTCCTTAGACAAGATTTACTGCACATGTTaGACAGTGTCTGAGAACCGG | + |
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Preference number: 2 (lower is better) Translates to: ITVTCALIPISPLNSLDKIYCTC*TVSENR Trigger: CCGGTTCTCAGACACTGTTCAACATGTGCAGTAAAT...CTTGTCTAAGGAATTCAAGGGCGAGATGGGGATGAGGGCACAGGTGACAGTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR GCA 90 bp | TACTCCCAGGGGACAAAGATATTTGTAGCTGTCACAAACTGGATGGGACTGCTAGTCTCAGGGCATCAATaGTCTGAGATTCTAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: YSQGTKIFVAVTNWMGLLVSGHQ*SEILAQ Trigger: CTGAGCTAGAATCTCAGAGCATTGATGCCCTGAGAC...TAGCAGTCCCATCCAGTTTGTGACAGCTACAAATATCTTTGTCCCCTGGGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | GGGTGGGAAGAGGAAGATATTCTTGATGTAAGAACATGTGGGGCAGGGAATGATTGTCACCAAACAATGTaGAACAGGCCTTGTCACTGT | + |
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Preference number: 2 (lower is better) Translates to: GWEEEDILDVRTCGAGNDCHQTM*NRPCHC Trigger: ACAGTGACAAGGCCTGTTTCACATTGTTTGGTGACA...ATCATTCCCTGCCCCACATGTTCTTACATCAAGAATATCTTCCTCTTCCCACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR CCA 90 bp | ATAACTGTCACCTGTGCCCTCATCCCCATCTCGCCCTTGAATTCCTTAGACAAGCTAAAATGTTTTGTTTaGACTCCCAAGGGCACAGAT | + |
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Preference number: 2 (lower is better) Translates to: ITVTCALIPISPLNSLDKLKCFV*TPKGTD Trigger: ATCTGTGCCCTTGGGAGTCCAAACAAAACATTTTAG...CTTGTCTAAGGAATTCAAGGGCGAGATGGGGATGAGGGCACAGGTGACAGTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 90 bp | GCAGGGAATGATACAGACTTGTCACCAAACAATGTGAAACAGGCCTaGTCACTGTCATTTACTGCACATGTTGAACAGTGTCTGAGAACC | + |
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Preference number: 2 (lower is better) Translates to: AGNDTDLSPNNVKQA*SLSFTAHVEQCLRT Trigger: GGTTCTCAGACACTGTTCAACATGTGCAGTAAATGACAGTGACAAGGCCTGTTTCACATTGTTTGGTGACAAGTCTGTATCATTCCCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | AGACTTGTCACCAAACAATGTGAAACAGGCCTTGTCACTGTCATTTACTGCACATACCCACACACACATTaGCCCAGGCAGAAATCACAT | + |
|
Preference number: 2 (lower is better) Translates to: RLVTKQCETGLVTVIYCTYPHTH*PRQKSH Trigger: ATGTGATTTCTGCCTGGGTCAATGTGTGTGTGGGTA...TGTGCAGTAAATGACAGTGACAAGGCCTGTTTCACATTGTTTGGTGACAAGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR TCA 90 bp | CAAGTTACACTACAGTGGATAAGAGTTTTAGTCATTTTCAATGGGAGAGCCATTCAGCACTGGAGAAGCTaGGGCAGGCAGATATCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: QVTLQWIRVLVIFNGRAIQHWRS*GRQISE Trigger: CTCAGATATCTGCCTGCCTCAGCTTCTCCAGTGCTG...AATGGCTCTCCCATTGAAAATGACTAAAACTCTTATCCACTGTAGTGTAACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 90 bp | GATATTCTTGATGTAAGAACATGTGGGGCAGGGAATGATACAGACTaGTCACCAAACAATGTGAAACAGGCCTTGTCACTGTCATTTACT | + |
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Preference number: 2 (lower is better) Translates to: DILDVRTCGAGNDTD*SPNNVKQALSLSFT Trigger: AGTAAATGACAGTGACAAGGCCTGTTTCACATTGTTTGGTGACAAGTCTGTATCATTCCCTGCCCCACATGTTCTTACATCAAGAATATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR TCA 72 bp | ATCTCAGCACTGGAGAAGCTGAGGCAGGCAGATATCTaGGTTCAAGACCAGTCAAGTGGGACCCTGTCACAA | + |
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Preference number: 3 (lower is better) Translates to: ISALEKLRQADI*VQDQSSGTLSQ Trigger: TTGTGACAGGGTCCCACTTGACTGGTCTTGAACTCAGATATCTGCCTGCCTCAGCTTCTCCAGTGCTGAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR-3UTR CAA 90 bp | TTACAAGACTTGTATAACTGTCACCTGTGCCCTCATCCCCATCTCGCCCTTGAAGGAGGTCCTTCTTTATaGGGAACACAGATGGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: LQDLYNCHLCPHPHLALEGGPSL*GTQMGR Trigger: TCTGCCCATCTGTGTTCCCAATAAAGAAGGACCTCC...TTCAAGGGCGAGATGGGGATGAGGGCACAGGTGACAGTTATACAAGTCTTGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR TCA 72 bp | TGTCACTGTCATTTACTGCACATGTTGAACAGTGTCTaGGAACCGGGGTCTCCCAGAGTGAGAGCTTTTGTT | + |
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Preference number: 3 (lower is better) Translates to: CHCHLLHMLNSV*EPGSPRVRAFV Trigger: AACAAAAGCTCTCACTCTGGGAGACCCCGGTTCTCAGACACTGTTCAACATGTGCAGTAAATGACAGTGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR TCA 72 bp | GGGCAGGGAATGATACAGACTTGTCACCAAACAATGTaGAACAGGCCTTGTCACTGTCATTTACTGCACATG | + |
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Preference number: 3 (lower is better) Translates to: GQGMIQTCHQTM*NRPCHCHLLHM Trigger: CATGTGCAGTAAATGACAGTGACAAGGCCTGTTTCACATTGTTTGGTGACAAGTCTGTATCATTCCCTGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR TCA 72 bp | AAACCAAGAACATTAGGTCTCAGGGCATCAATGCTCTaGGATTCTAGCTCAGGTCCCCTCTTTGTGACATAT | + |
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Preference number: 3 (lower is better) Translates to: KPRTLGLRASML*DSSSGPLFVTY Trigger: ATATGTCACAAAGAGGGGACCTGAGCTAGAATCTCAGAGCATTGATGCCCTGAGACCTAATGTTCTTGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CCA 90 bp | GGGGTGGAATGGGAGGAAGAGCTGGGTCAAGGGTATACCAGTACCCGCAGACTGTTACCTGATCCAGAGTaGAGCGTTCCACGCGCATGG | + |
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Preference number: 4 (lower is better) Translates to: GVEWEEELGQGYTSTRRLLPDPE*SVPRAW Trigger: CCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAA...CAGTCTGCGGGTACTGGTATACCCTTGACCCAGCTCTTCCTCCCATTCCACCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR TCA 90 bp | CAAACACCCACCCTCGAGCCCTGCCCATTAACACTCTTAAGAACCTTCTCCAGTGCAGAAGCTCCCGCTTaGCAGGCTGCACTGGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: QTPTLEPCPLTLLRTFSSAEAPA*QAALVS Trigger: GGAAACCAGTGCAGCCTGTCAAGCGGGAGCTTCTGC...ACTGGAGAAGGTTCTTAAGAGTGTTAATGGGCAGGGCTCGAGGGTGGGTGTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR TCA 90 bp | CAAACACCCACCCTCGAGCCCTGCCCATTAACACTCTTAAGAACCTTCTCCAGTTCTCTCTCTCCTCTGTaGGTCTCTTCTCCGCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: QTPTLEPCPLTLLRTFSSSLSPL*VSSPRA Trigger: AGCTCGCGGAGAAGAGACTCACAGAGGAGAGAGAGA...ACTGGAGAAGGTTCTTAAGAGTGTTAATGGGCAGGGCTCGAGGGTGGGTGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR GCA 90 bp | ACCACAAACACCCACCCTCGAGCCCTGCCCATTAACACTCTTAAGAACCTTCTCTCCCGCTTGACAGGCTaGACTGGTTTCCCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TTNTHPRALPINTLKNLLSRLTG*TGFPSF Trigger: GAAGGATGGGAAACCAGTGCAGCCTGTCAAGCGGGA...GAGAAGGTTCTTAAGAGTGTTAATGGGCAGGGCTCGAGGGTGGGTGTTTGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CCA 90 bp | CAAACACCCACCCTCGAGCCCTGCCCATTAACACTCTTAAGAACCTTCTCCAGTAGCGTTCCACGCGCATaGACATACCCAGGTTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: QTPTLEPCPLTLLRTFSSSVPRA*TYPGFA Trigger: AGCGAAACCTGGGTATGTCCATGCGCGTGGAACGCT...ACTGGAGAAGGTTCTTAAGAGTGTTAATGGGCAGGGCTCGAGGGTGGGTGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CCA 90 bp | ACTGCACATGTTGAACAGTGTCTGAGAACCGGGGTCTCCCAGAGTGAGAGCTTTCTTGACAGGCTGCACTaGTTTCCCATCCTTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TAHVEQCLRTGVSQSESFLDRLH*FPILLL Trigger: GAGAAGAAGGATGGGAAACCAGTGCAGCCTGTCAAG...AAAGCTCTCACTCTGGGAGACCCCGGTTCTCAGACACTGTTCAACATGTGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CCA 90 bp | GGGGTGGAATGGGAGGAAGAGCTGGGTCAAGGGTATACCAGTACCCGCAGACTGTTCTTTCCATTAATGTaGTCCAGGAAGTTAATGGAG | + |
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Preference number: 4 (lower is better) Translates to: GVEWEEELGQGYTSTRRLFFPLM*SRKLME Trigger: CTCCATTAACTTCCTGGACCACATTAATGGAAAGAA...CAGTCTGCGGGTACTGGTATACCCTTGACCCAGCTCTTCCTCCCATTCCACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 72 bp | AGAGCCAGCAAAGGGAGCTTCATCTGTTTACAAGACTaGTATAACTGTCACCTGTGCCCTCATCCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: RASKGSFICLQD*YNCHLCPHPHL Trigger: GAGATGGGGATGAGGGCACAGGTGACAGTTATACAAGTCTTGTAAACAGATGAAGCTCCCTTTGCTGGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR GCA 90 bp | CAAAACTTACCTAGCTCATCATCAACAGTGCCAAGCCTGAATAACCCAGTGCCCGAAACCCATCACAGCTaGCATTTCATCATCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QNLPSSSSTVPSLNNPVPETHHS*HFIILL Trigger: GAGGAGGATGATGAAATGGCAGCTGTGATGGGTTTC...GGGCACTGGGTTATTCAGGCTTGGCACTGTTGATGATGAGCTAGGTAAGTTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 72 bp | GGACACAGGAAAAGGGAGGATGTTCAGACAACAGGTTaGATAGATGAAGAGGGAAAGATGCAGGGGGATATG | + |
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Preference number: 4 (lower is better) Translates to: GHRKREDVQTTG*IDEEGKMQGDM Trigger: CATATCCCCCTGCATCTTTCCCTCTTCATCTATCAAACCTGTTGTCTGAACATCCTCCCTTTTCCTGTGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR TCA 90 bp | TCATTTACTGCACATGTTGAACAGTGTCTGAGAACCGGGGTCTCCCAGAGTGAGATACCCAGGTTTCGCTaGTGTTTCTTTCCATTAATG | + |
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Preference number: 4 (lower is better) Translates to: SFTAHVEQCLRTGVSQSEIPRFR*CFFPLM Trigger: CATTAATGGAAAGAAACATCAGCGAAACCTGGGTAT...CTCACTCTGGGAGACCCCGGTTCTCAGACACTGTTCAACATGTGCAGTAAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 72 bp | GATGTAAGAACATGTGGGGCAGGGAATGATACAGACTaGTCACCAAACAATGTGAAACAGGCCTTGTCACTG | + |
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Preference number: 4 (lower is better) Translates to: DVRTCGAGNDTD*SPNNVKQALSL Trigger: CAGTGACAAGGCCTGTTTCACATTGTTTGGTGACAAGTCTGTATCATTCCCTGCCCCACATGTTCTTACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| 3UTR CAA 72 bp | GATACAGACTTGTCACCAAACAATGTGAAACAGGCCTaGTCACTGTCATTTACTGCACATGTTGAACAGTGT | + |
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Preference number: 4 (lower is better) Translates to: DTDLSPNNVKQA*SLSFTAHVEQC Trigger: ACACTGTTCAACATGTGCAGTAAATGACAGTGACAAGGCCTGTTTCACATTGTTTGGTGACAAGTCTGTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS CCA 90 bp | CTTGTAATCCCTGTGCCGCAGAAGCTCCCGCTTGACAGGCTGCACTaGTTTCCCATCCTTCTTCTCTCTCTCCTCTGTGAGTCTCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LVIPVPQKLPLDRLH*FPILLLSLLCESLL Trigger: GAGAAGAGACTCACAGAGGAGAGAGAGAAGAAGGATGGGAAACCAGTGCAGCCTGTCAAGCGGGAGCTTCTGCGGCACAGGGATTACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CAA 90 bp | ACTGCACATGTTGAACAGTGTCTGAGAACCGGGGTCTCCCAGAGTGAGAGCTTTATCGTCTTCCCCAGCTaGGACTCCAGGTCCACCTTG | + |
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Preference number: 5 (lower is better) Translates to: TAHVEQCLRTGVSQSESFIVFPS*DSRSTL Trigger: CAAGGTGGACCTGGAGTCCAAGCTGGGGAAGACGAT...AAAGCTCTCACTCTGGGAGACCCCGGTTCTCAGACACTGTTCAACATGTGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS TCA 90 bp | TCCAGAGTGGAGCGTTCCACGCGCATGGACATACCCAGGTTTCGCTaGTGTTTCTTTCCATTAATGTGGTCCAGGAAGTTAATGGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SRVERSTRMDIPRFR*CFFPLMWSRKLMES Trigger: AGACTCCATTAACTTCCTGGACCACATTAATGGAAAGAAACATCAGCGAAACCTGGGTATGTCCATGCGCGTGGAACGCTCCACTCTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS GCA 90 bp | GTAACTCTTCTTGGTGGAACCAAAGCCAGAGAAACCCATCACAGCTaGCATTTCATCATCCTCCTCAAAAGTCAAGTCCTCCTCGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: VTLLGGTKARETHHS*HFIILLKSQVLLGS Trigger: AGAGCCGAGGAGGACTTGACTTTTGAGGAGGATGATGAAATGGCAGCTGTGATGGGTTTCTCTGGCTTTGGTTCCACCAAGAAGAGTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS CCA 90 bp | TCTTCTTCTTGTTCACCTCAAAACGCTTCTTTACCTGATCCAGAGTaGAGCGTTCCACGCGCATGGACATACCCAGGTTTCGCTGATGTT | + |
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Preference number: 5 (lower is better) Translates to: SSSCSPQNASLPDPE*SVPRAWTYPGFADV Trigger: AACATCAGCGAAACCTGGGTATGTCCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAAAGAAGCGTTTTGAGGTGAACAAGAAGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS TCA 90 bp | TTCTCTTCCATCTTCTTCTTGTTCACCTCAAAACGCTTCTTTACCTaGTCCAGAGTGGAGCGTTCCACGCGCATGGACATACCCAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FSSIFFLFTSKRFFT*SRVERSTRMDIPRF Trigger: AAACCTGGGTATGTCCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAAAGAAGCGTTTTGAGGTGAACAAGAAGAAGATGGAAGAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CAA 90 bp | CAAGTTACACTACAGTGGATAAGAGTTTTAGTCATTTTCAATGGGAGAGCCATTCGCAGAAGCTCCCGCTaGACAGGCTGCACTGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: QVTLQWIRVLVIFNGRAIRRSSR*TGCTGF Trigger: GAAACCAGTGCAGCCTGTCAAGCGGGAGCTTCTGCG...AATGGCTCTCCCATTGAAAATGACTAAAACTCTTATCCACTGTAGTGTAACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CAA 90 bp | CAAAACTTACCTAGCTCATCATCAACAGTGCCAAGCCTGAATAACCCAGTGCCCTTCTCATATTCATCTTaGTCCCACTTTCGGCGAAAG | + |
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Preference number: 5 (lower is better) Translates to: QNLPSSSSTVPSLNNPVPFSYSS*SHFRRK Trigger: CTTTCGCCGAAAGTGGGACAAAGATGAATATGAGAA...GGGCACTGGGTTATTCAGGCTTGGCACTGTTGATGATGAGCTAGGTAAGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS-3UTR CAA 90 bp | GGGTGGGAAGAGGAAGATATTCTTGATGTAAGAACATGTGGGGCAGGGAATGATTCTTCCATCTTCTTCTaGTTCACCTCAAAACGCTTC | + |
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Preference number: 5 (lower is better) Translates to: GWEEEDILDVRTCGAGNDSSIFF*FTSKRF Trigger: GAAGCGTTTTGAGGTGAACAAGAAGAAGATGGAAGA...ATCATTCCCTGCCCCACATGTTCTTACATCAAGAATATCTTCCTCTTCCCACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS TCA 72 bp | CCACCTTGTAATCCCTGTGCCGCAGAAGCTCCCGCTTaGCAGGCTGCACTGGTTTCCCATCCTTCTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: PPCNPCAAEAPA*QAALVSHPSSL Trigger: GAGAGAAGAAGGATGGGAAACCAGTGCAGCCTGTCAAGCGGGAGCTTCTGCGGCACAGGGATTACAAGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS CCA 72 bp | TGTTCACCTCAAAACGCTTCTTTACCTGATCCAGAGTaGAGCGTTCCACGCGCATGGACATACCCAGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: CSPQNASLPDPE*SVPRAWTYPGF Trigger: GAAACCTGGGTATGTCCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAAAGAAGCGTTTTGAGGTGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS CCA 72 bp | ACAGACATTGCAGTAGTAGCCTCCCATTTCAGACTGTaGGGTCGTCTTGGTGATAACAATCGTCTTCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: TDIAVVASHFRL*GRLGDNNRLPQ Trigger: CTGGGGAAGACGATTGTTATCACCAAGACGACCCCACAGTCTGAAATGGGAGGCTACTACTGCAATGTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS CCA 72 bp | TCTTTACCTGATCCAGAGTGGAGCGTTCCACGCGCATaGACATACCCAGGTTTCGCTGATGTTTCTTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SLPDPEWSVPRA*TYPGFADVSFH Trigger: ATGGAAAGAAACATCAGCGAAACCTGGGTATGTCCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS TCA 72 bp | GCACTGGTTTCCCATCCTTCTTCTCTCTCTCCTCTGTaGGTCTCTTCTCCGCGAGCTTCTCATATTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: ALVSHPSSLSPL*VSSPRASHIHL Trigger: AAGATGAATATGAGAAGCTCGCGGAGAAGAGACTCACAGAGGAGAGAGAGAAGAAGGATGGGAAACCAGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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| CDS TCA 72 bp | ATCTTCTTCTTGTTCACCTCAAAACGCTTCTTTACCTaGTCCAGAGTGGAGCGTTCCACGCGCATGGACATA | + |
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Preference number: 6 (lower is better) Translates to: IFFLFTSKRFFT*SRVERSTRMDI Trigger: TATGTCCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAAAGAAGCGTTTTGAGGTGAACAAGAAGAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001419.10 |
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