RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZKSCAN6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018347

Ensembl transcript IDs: ENSMUST00000018491.8, ENSMUST00000071465.9

Found 131 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTaGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGAC +
Preference number: 1 (lower is better)
Translates to: PSSSPSNTQRGGGRF*SKLFQAEVSRLAVD
Trigger: GTCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR GCA 90 bp AAACTAGACTCAACTCAGAACAACATCCCCTCCACATCAAAACAGTaGCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTT +
Preference number: 1 (lower is better)
Translates to: KLDSTQNNIPSTSKQ*PAPLPPTHREEEVV
Trigger: AACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTGGAGGGGATGTTGTTCTGAGTTGAGTCTAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR CCA 90 bp TCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTaGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAG +
Preference number: 1 (lower is better)
Translates to: SPSVTACSRSQSGSH*RATKVIIYTACLSQ
Trigger: CTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR-3UTR TCA 90 bp TGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCATCTTCCAGGCAGAGGTaGGCAGGCTTGCAGTGGACT +
Preference number: 2 (lower is better)
Translates to: CPAPLPPTHREEEVVSGPSSRQR*AGLQWT
Trigger: AGTCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGA...TGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR-3UTR GCA 90 bp GTCGACCCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTTCCACATCAAAACAGTaGCCAGCTCCTCTCCCTCCA +
Preference number: 2 (lower is better)
Translates to: VDPTSPSVTACSRSQSGSSTSKQ*PAPLPP
Trigger: TGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTGGA...AGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGGGTCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR-3UTR CCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGGGAGGAGGTCGTTTCTaGTCCAAGCTCTTCCAGGCA +
Preference number: 2 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGGGGRF*SKLFQA
Trigger: TGCCTGGAAGAGCTTGGACCAGAAACGACCTCCTCC...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
50% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR-3UTR GCA 90 bp TCAGCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTTCCACATCAAAACAGTaGCCAGCTCCTCTCCCTCCA +
Preference number: 2 (lower is better)
Translates to: SAQFISNKGQLDRNSVTSSTSKQ*PAPLPP
Trigger: TGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTGGA...ACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR GCA 72 bp CTCACAGTCGACCCTACCTCCCCTTCTGTGACAGCCTaGTCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCT +
Preference number: 3 (lower is better)
Translates to: LTVDPTSPSVTA*SRSQSGSHWRA
Trigger: AGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGGGTCGACTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR CCA 72 bp TCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTaGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTT +
Preference number: 3 (lower is better)
Translates to: SPSNTQRGGGRF*SKLFQAEVSRL
Trigger: AAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR GCA 72 bp GACAGGAACTCTGTCACCAGTCTGACAAAGATGGCATaGACTCACAGTCGACCCTACCTCCCCTTCTGTGAC +
Preference number: 3 (lower is better)
Translates to: DRNSVTSLTKMA*THSRPYLPFCD
Trigger: GTCACAGAAGGGGAGGTAGGGTCGACTGTGAGTGCATGCCATCTTTGTCAGACTGGTGACAGAGTTCCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR GCA 72 bp TCAACTCAGAACAACATCCCCTCCACATCAAAACAGTaGCCAGCTCCTCTCCCTCCAACACACAGAGAGGAG +
Preference number: 3 (lower is better)
Translates to: STQNNIPSTSKQ*PAPLPPTHREE
Trigger: CTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTGGAGGGGATGTTGTTCTGAGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
3UTR CCA 72 bp GTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTaGAGAGCTACTAAAGTCATTATCTACACTGCATGT +
Preference number: 3 (lower is better)
Translates to: VTACSRSQSGSH*RATKVIIYTAC
Trigger: ACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp GGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGACGGCTGGAGCTCCAGCTaGACTGCTTGCCACAGTGGG +
Preference number: 4 (lower is better)
Translates to: GRFWSKLFQAEVSRLAVDGWSSS*TACHSG
Trigger: CCCACTGTGGCAAGCAGTTCAGCTGGAGCTCCAGCC...GTCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGGGCTGGAGCTCCAGCTaGACTGCTTGCCACAGTGGG +
Preference number: 4 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWGWSSS*TACHSG
Trigger: CCCACTGTGGCAAGCAGTTCAGCTGGAGCTCCAGCC...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCGGGCTCCACCTCCAGTaGAGGCTCCAACTTGTCCCC +
Preference number: 4 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSGLHLQ*RLQLVP
Trigger: GGGGACAAGTTGGAGCCTGCACTGGAGGTGGAGCCC...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAGCCTCTCCTCAGGTCTaGCAGGAAGCTGGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: CPAPLPPTHREEEVVSGPASPQV*QEAGKQ
Trigger: CTGCTTCCCAGCTTCCTGCCAGACCTGAGGAGAGGC...TGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp GCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTGGGCCATGGGGGATCTaGCCTGTCCCTTCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: APLPPTHREEEVVSGPSSGPWGI*PVPSER
Trigger: CCTCTCAGAAGGGACAGGCCAGATCCCCCATGGCCC...AGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AGGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGAGGGCCATGGGGGATCTaGCCTGTCCCTTCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: RSFLVQALPGRGEQACSGGPWGI*PVPSER
Trigger: CCTCTCAGAAGGGACAGGCCAGATCCCCCATGGCCC...TCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCCAAGTGGGCAGTTTCTaGGCCATGGGGGATCTGGCC +
Preference number: 4 (lower is better)
Translates to: SSSPSNTQRGGGRFWSKLQVGSF*AMGDLA
Trigger: GGCCAGATCCCCCATGGCCCAGAAACTGCCCACTTG...GAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTTGGCATCCTCAGCCTTaGCCAGAAAAGGAAGCGGGC +
Preference number: 4 (lower is better)
Translates to: QLLSLQHTERRRSFLVQAWHPQP*PEKEAG
Trigger: GCCCGCTTCCTTTTCTGGCCAAGGCTGAGGATGCCA...AGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp GGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGACCTGTATGTGCTGACCTaGCTGTTTCCCAGAGCCCCT +
Preference number: 4 (lower is better)
Translates to: GRFWSKLFQAEVSRLAVDLYVLT*LFPRAP
Trigger: AGGGGCTCTGGGAAACAGCCAGGTCAGCACATACAG...GTCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp TGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAGGTAACGAAACTGCCTaGAAAGCTGGCGAGCAGTCT +
Preference number: 4 (lower is better)
Translates to: CPAPLPPTHREEEVVSGPGNETA*KAGEQS
Trigger: AGACTGCTCGCCAGCTTTTCAGGCAGTTTCGTTACC...TGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGGTGGTGGCGCAAGCCTaGGAAGTCACTGAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWVVAQA*EVTEAF
Trigger: AAAGGCTTCAGTGACTTCTCAGGCTTGCGCCACCAC...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp GTCGACCCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTAACTGCCTGAAAAGCTaGCGAGCAGTCTCAGGGTTG +
Preference number: 4 (lower is better)
Translates to: VDPTSPSVTACSRSQSGSNCLKS*RAVSGL
Trigger: CAACCCTGAGACTGCTCGCCAGCTTTTCAGGCAGTT...AGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGGGTCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCTCCTGTCCACTGCCTaGACACTGCTTCCTCACCCA +
Preference number: 4 (lower is better)
Translates to: SSPSNTQRGGGRFWSKLFLLSTA*TLLPHP
Trigger: TGGGTGAGGAAGCAGTGTCCAGGCAGTGGACAGGAG...GAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCGGTCTGGCAGGAAGCTaGGAAGCAGCCAGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSGLAGS*EAARAN
Trigger: ATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCAGACC...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTGGTAACGAAACTGCCTaGAAAGCTGGCGAGCAGTCT +
Preference number: 4 (lower is better)
Translates to: QLLSLQHTERRRSFLVQAGNETA*KAGEQS
Trigger: AGACTGCTCGCCAGCTTTTCAGGCAGTTTCGTTACC...AGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp AGGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGATGGTGGAGCCTCACCTaGTGCCTGACAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: RSFLVQALPGRGEQACSGWWSLT*CLTENI
Trigger: GATGTTTTCTGTCAGGCATCAGGTGAGGCTCCACCA...TCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCCCAAGTGTGATCTCTaGTGCTTGTCAAGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: QLLSLQHTERRRSFLVQAPKCDL*CLSRLE
Trigger: CTCCAGCCTTGACAAGCATCAGAGATCACACTTGGG...AGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp GCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTCCCAAGTGTGATCTCTaGTGCTTGTCAAGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: APLPPTHREEEVVSGPSSPKCDL*CLSRLE
Trigger: CTCCAGCCTTGACAAGCATCAGAGATCACACTTGGG...AGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp AGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTGGGTGCTGATCCAGTaGCACAGTTTCTGGGGTTCT +
Preference number: 4 (lower is better)
Translates to: SSSPSNTQRGGGRFWSKLWVLIQ*HSFWGS
Trigger: AGAACCCCAGAAACTGTGGCACTGGATCAGCACCCA...GAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CACATCAAAACAGTGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTGAGCAGTCTCAGGGTTaGCAAGCTCTCTTTGCTGGG +
Preference number: 4 (lower is better)
Translates to: HIKTVPSSSPSNTQRGGGEQSQG*QALFAG
Trigger: CCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTC...ACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGGCTGTTCCCAACTCTTaGTCTCTAACAGGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWAVPNS*SLTGLS
Trigger: GGAGAGGCCTGTTAGAGACCAAGAGTTGGGAACAGC...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCGCTGTTCCCAACTCTTaGTCTCTAACAGGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSAVPNS*SLTGLS
Trigger: GGAGAGGCCTGTTAGAGACCAAGAGTTGGGAACAGC...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp GGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGACGTTTTCCAGAGCCTCTaGGACACTGTCTCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: GRFWSKLFQAEVSRLAVDVFQSL*DTVSSK
Trigger: TTTGGAGGAGACAGTGTCCCAGAGGCTCTGGAAAAC...GTCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCACACACTCTCTGCAAGTaGGCAGTTTCTGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: LSLQHTERRRSFLVQALPHTLCK*AVSGPW
Trigger: CCATGGCCCAGAAACTGCCCACTTGCAGAGAGTGTG...TGGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp TGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAATGCCTGCTACTCCTaGGACCATTTTCCCATAGGT +
Preference number: 4 (lower is better)
Translates to: CPAPLPPTHREEEVVSGPNACYS*DHFPIG
Trigger: ACCTATGGGAAAATGGTCTCAGGAGTAGCAGGCATT...TGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp GTCGACCCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTAATGCCTGCTACTCCTaGGACCATTTTCCCATAGGT +
Preference number: 4 (lower is better)
Translates to: VDPTSPSVTACSRSQSGSNACYS*DHFPIG
Trigger: ACCTATGGGAAAATGGTCTCAGGAGTAGCAGGCATT...AGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGGGTCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CACATCAAAACAGTGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTTGGTGGAGCCTCACCTaGTGCCTGACAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: HIKTVPSSSPSNTQRGGGWWSLT*CLTENI
Trigger: GATGTTTTCTGTCAGGCATCAGGTGAGGCTCCACCA...ACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp GGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGACAGCCTGAGAAGTCACTaGAGCCTTTCCCACAGTAAT +
Preference number: 4 (lower is better)
Translates to: GRFWSKLFQAEVSRLAVDSLRSH*SLSHSN
Trigger: ATTACTGTGGGAAAGGCTTCAGTGACTTCTCAGGCT...GTCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp TCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCTGGGTGCTGATCCAGTaGCACAGTTTCTGGGGTTCT +
Preference number: 4 (lower is better)
Translates to: SSPSNTQRGGGRFWSKLFWVLIQ*HSFWGS
Trigger: AGAACCCCAGAAACTGTGGCACTGGATCAGCACCCA...GAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AGGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGAGCAAGCTCTCTTTGCTaGGTAGCATCTGATGCAGAG +
Preference number: 4 (lower is better)
Translates to: RSFLVQALPGRGEQACSGASSLC*VASDAE
Trigger: CTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGC...TCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCTCTTGTCCTAGAACTTaGGTGCTGATCCAGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSSCPRT*VLIQCH
Trigger: GTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGA...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGTGGATTTTCTCGTGGTaGCGCAAGCCTGAGAAGTCA +
Preference number: 4 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWWIFSW*RKPEKS
Trigger: TGACTTCTCAGGCTTGCGCCACCACGAGAAAATCCA...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CACATCAAAACAGTGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTGTGTGGATTTTCTCGTaGTGGCGCAAGCCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: HIKTVPSSSPSNTQRGGGVWIFS*WRKPEK
Trigger: CTTCTCAGGCTTGCGCCACCACGAGAAAATCCACAC...ACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CACATCAAAACAGTGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTTTGCTGGGTAGCATCTaGTGCAGAGAATGTGGCATC +
Preference number: 4 (lower is better)
Translates to: HIKTVPSSSPSNTQRGGGLLGSI*CRECGI
Trigger: GATGCCACATTCTCTGCATCAGATGCTACCCAGCAA...ACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp GTCGACCCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTTTGCAAATGTGGCAATaGAAGTATGTCTCTCCCGTG +
Preference number: 4 (lower is better)
Translates to: VDPTSPSVTACSRSQSGSLQMWQ*KYVSPV
Trigger: CACGGGAGAGACATACTTTCATTGCCACATTTGCAA...AGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGGGTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp AGGTCGTTTCTGGTCCAAGCTCTTCCAGGCAGAGGTGAGCAGGCTTGCAGTGGACATCTTCCCCAAGTGTaGTCTCTGATGCTTGTCAAG +
Preference number: 4 (lower is better)
Translates to: RSFLVQALPGRGEQACSGHLPQV*SLMLVK
Trigger: CTTGACAAGCATCAGAGATCACACTTGGGGAAGATG...TCCACTGCAAGCCTGCTCACCTCTGCCTGGAAGAGCTTGGACCAGAAACGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp CAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTGTTTGGAGTTGGAAATaGCTGCTACTCCTGAGACCA +
Preference number: 4 (lower is better)
Translates to: QLLSLQHTERRRSFLVQAVWSWK*LLLLRP
Trigger: TGGTCTCAGGAGTAGCAGGCATTTCCAACTCCAAAC...AGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp AGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCCTTGTCTGTCTTCTTTaGAGGGGAGTCTTGCCATCT +
Preference number: 4 (lower is better)
Translates to: SSSPSNTQRGGGRFWSKLLVCLL*RGVLPS
Trigger: AGATGGCAAGACTCCCCTGCAAAGAAGACAGACAAG...GAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCCTTGTCTGTCTTCTTTaGAGGGGAGTCTTGCCATCT +
Preference number: 4 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSLVCLL*RGVLPS
Trigger: AGATGGCAAGACTCCCCTGCAAAGAAGACAGACAAG...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp CACATCAAAACAGTGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTTTTTCCCACACTCTCTaGAAGTGGGCAGTTTCTGGG +
Preference number: 4 (lower is better)
Translates to: HIKTVPSSSPSNTQRGGGFSHTL*KWAVSG
Trigger: CCCAGAAACTGCCCACTTGCAGAGAGTGTGGGAAAA...ACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCACAGTGCCACAGTTTCTaGGGTTCTCCCTTCAAGCTT +
Preference number: 4 (lower is better)
Translates to: LSLQHTERRRSFLVQALPQCHSF*GSPFKL
Trigger: AAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTG...TGGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCAGTCAGGTTTGGAGTTaGAAATGCCTGCTACTCCTG +
Preference number: 4 (lower is better)
Translates to: SSSPSNTQRGGGRFWSKLSQVWS*KCLLLL
Trigger: CAGGAGTAGCAGGCATTTCCAACTCCAAACCTGACT...GAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTGCCTCTCCTCAGGTCTaGCAGGAAGCTGGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: PALEASQALIGELLKSLSASPQV*QEAGKQ
Trigger: CTGCTTCCCAGCTTCCTGCCAGACCTGAGGAGAGGC...AGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTTGTCTCAGGGTCTCCTaGGGCCCCGATAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: SRSQSGSHWRATKVIIYTCLRVS*GPDSTW
Trigger: CCAGGTGCTATCGGGGCCCCAGGAGACCCTGAGACA...AGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTGGCAGTTTCTGGGCCATaGGGGATCTGGCCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: LEASQALIGELLKSLSTLAVSGP*GIWPVP
Trigger: AGGGACAGGCCAGATCCCCCATGGCCCAGAAACTGC...CAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGATGGCATGCCAAGTGGGCAGTTTCTaGGCCATGGGGGATCTGGCC +
Preference number: 4 (lower is better)
Translates to: NKGQLDRNSVTSLTKMACQVGSF*AMGDLA
Trigger: GGCCAGATCCCCCATGGCCCAGAAACTGCCCACTTG...GCATGCCATCTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR GCA 90 bp GCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGGGGCTCCACCTCCAGTaGAGGCTCCAACTTGTCCCC +
Preference number: 4 (lower is better)
Translates to: AQFISNKGQLDRNSVTSLGLHLQ*RLQLVP
Trigger: GGGGACAAGTTGGAGCCTGCACTGGAGGTGGAGCCC...CAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTGGTCTGGCAGGAAGCTaGGAAGCAGCCAGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: PALEASQALIGELLKSLSGLAGS*EAARAN
Trigger: ATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCAGACC...AGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTAACTGCCTGAAAAGCTaGCGAGCAGTCTCAGGGTTG +
Preference number: 4 (lower is better)
Translates to: PALEASQALIGELLKSLSNCLKS*RAVSGL
Trigger: CAACCCTGAGACTGCTCGCCAGCTTTTCAGGCAGTT...AGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCACACTCTCTGCAAGTaGGCAGTTTCTGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: LEASQALIGELLKSLSTLHTLCK*AVSGPW
Trigger: CCATGGCCCAGAAACTGCCCACTTGCAGAGAGTGTG...CAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTGCCTCACCTGATGCCTaGCAGAAAACATCCAGACAT +
Preference number: 4 (lower is better)
Translates to: PALEASQALIGELLKSLSASPDA*QKTSRH
Trigger: ATGTCTGGATGTTTTCTGTCAGGCATCAGGTGAGGC...AGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTGCAAGCTCTCTTTGCTaGGTAGCATCTGATGCAGAG +
Preference number: 4 (lower is better)
Translates to: PALEASQALIGELLKSLSASSLC*VASDAE
Trigger: CTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGC...AGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGAGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGTGTCTCAGGGTCTCCTaGGGCCCCGATAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKCLRVS*GPDSTW
Trigger: CCAGGTGCTATCGGGGCCCCAGGAGACCCTGAGACA...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGCAGTGCCACAGTTTCTaGGGTTCTCCCTTCAAGCTT +
Preference number: 4 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGQCHSF*GSPFKL
Trigger: AAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTG...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGTCTTGTCCTAGAACTTaGGTGCTGATCCAGTGCCAC +
Preference number: 4 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGSCPRT*VLIQCH
Trigger: GTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGA...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TCAGCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTGCAGTTTCTGGGCCATaGGGGATCTGGCCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: SAQFISNKGQLDRNSVTSAVSGP*GIWPVP
Trigger: AGGGACAGGCCAGATCCCCCATGGCCCAGAAACTGC...ACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGCATCCCTGGTCCCTGTaGTTTTCCAAGTTTAGGTTC +
Preference number: 4 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGHPWSL*FSKFRF
Trigger: GAACCTAAACTTGGAAAATCACAGGGACCAGGGATG...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGAGCCTGAGAAGTCACTaGAGCCTTTCCCACAGTAAT +
Preference number: 4 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGSLRSH*SLSHSN
Trigger: ATTACTGTGGGAAAGGCTTCAGTGACTTCTCAGGCT...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp GCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGGTGGTGGCGCAAGCCTaGGAAGTCACTGAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: AQFISNKGQLDRNSVTSLVVAQA*EVTEAF
Trigger: AAAGGCTTCAGTGACTTCTCAGGCTTGCGCCACCAC...CAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TCAGCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTCCTGTCCACTGCCTaGACACTGCTTCCTCACCCA +
Preference number: 4 (lower is better)
Translates to: SAQFISNKGQLDRNSVTSLLSTA*TLLPHP
Trigger: TGGGTGAGGAAGCAGTGTCCAGGCAGTGGACAGGAG...ACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGAGTCAGGTTTGGAGTTaGAAATGCCTGCTACTCCTG +
Preference number: 4 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGSQVWS*KCLLLL
Trigger: CAGGAGTAGCAGGCATTTCCAACTCCAAACCTGACT...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGATGGCATGCGTTTTCCAGAGCCTCTaGGACACTGTCTCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: NKGQLDRNSVTSLTKMACVFQSL*DTVSSK
Trigger: TTTGGAGGAGACAGTGTCCCAGAGGCTCTGGAAAAC...GCATGCCATCTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp AATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGATGGCATGCTGGATTTTCTCGTGGTaGCGCAAGCCTGAGAAGTCA +
Preference number: 4 (lower is better)
Translates to: NKGQLDRNSVTSLTKMACWIFSW*RKPEKS
Trigger: TGACTTCTCAGGCTTGCGCCACCACGAGAAAATCCA...GCATGCCATCTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp TCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCCTCACCTGATGCCTaGCAGAAAACATCCAGACAT +
Preference number: 4 (lower is better)
Translates to: SRSQSGSHWRATKVIIYTASPDA*QKTSRH
Trigger: ATGTCTGGATGTTTTCTGTCAGGCATCAGGTGAGGC...AGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATGTCTTTCCCAGGGGGTTGCAAATGTGGCAATaGAAGTATGTCTCTCCCGTG +
Preference number: 4 (lower is better)
Translates to: LIGELLKSLSTLHVFPRGLQMWQ*KYVSPV
Trigger: CACGGGAGAGACATACTTTCATTGCCACATTTGCAA...CCCCCTGGGAAAGACATGCAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp CTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTGCATCTTCCCCAAGTGTaGTCTCTGATGCTTGTCAAG +
Preference number: 4 (lower is better)
Translates to: LEASQALIGELLKSLSTLHLPQV*SLMLVK
Trigger: CTTGACAAGCATCAGAGATCACACTTGGGGAAGATG...CAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGTGGCATCCTCAGCCTTaGCCAGAAAAGGAAGCGGGC +
Preference number: 4 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKWHPQP*PEKEAG
Trigger: GCCCGCTTCCTTTTCTGGCCAAGGCTGAGGATGCCA...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGCTGTATGTGCTGACCTaGCTGTTTCCCAGAGCCCCT +
Preference number: 4 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKLYVLT*LFPRAP
Trigger: AGGGGCTCTGGGAAACAGCCAGGTCAGCACATACAG...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp TCAGCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTTTGCTGGGTAGCATCTaGTGCAGAGAATGTGGCATC +
Preference number: 4 (lower is better)
Translates to: SAQFISNKGQLDRNSVTSLLGSI*CRECGI
Trigger: GATGCCACATTCTCTGCATCAGATGCTACCCAGCAA...ACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CCA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGGTGTGGATTTTCTCGTaGTGGCGCAAGCCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKVWIFS*WRKPEK
Trigger: CTTCTCAGGCTTGCGCCACCACGAGAAAATCCACAC...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGCTAGAACTTGGGTGCTaGTCCAGTGCCACAGTTTCT +
Preference number: 4 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKLELGC*SSATVS
Trigger: AGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAG...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR TCA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGCATCCCTGGTCCCTGTaGTTTTCCAAGTTTAGGTTC +
Preference number: 4 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKHPWSL*FSKFRF
Trigger: GAACCTAAACTTGGAAAATCACAGGGACCAGGGATG...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 90 bp GAGATGCGCCCCAGTTCCCTCACCCTGATGGTTTTCCAGAGCCTCTaGGACACTGTCTCCTCCAAAGCGATGCGGCTCACTCTCACCGAA +
Preference number: 5 (lower is better)
Translates to: EMRPSSLTLMVFQSL*DTVSSKAMRLTLTE
Trigger: TTCGGTGAGAGTGAGCCGCATCGCTTTGGAGGAGACAGTGTCCCAGAGGCTCTGGAAAACCATCAGGGTGAGGGAACTGGGGCGCATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCGTGGCATCCTCAGCCTaGGCCAGAAAAGGAAGCGGG +
Preference number: 5 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSVASSA*ARKGSG
Trigger: CCCGCTTCCTTTTCTGGCCAAGGCTGAGGATGCCAC...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCAGTGCAGGCTCCAACTaGTCCCCAGGGCAGTGTGTC +
Preference number: 5 (lower is better)
Translates to: PLPPTHREEEVVSGPSSSSAGSN*SPGQCV
Trigger: GACACACTGCCCTGGGGACAAGTTGGAGCCTGCACT...GGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 90 bp TCAGGGTCTCCTGGGGCCCCGATAGCACCTGGTAACGAAACTGCCTaGAAAGCTGGCGAGCAGTCTCAGGGTTGGCAAGCTCTCTTTGCT +
Preference number: 5 (lower is better)
Translates to: SGSPGAPIAPGNETA*KAGEQSQGWQALFA
Trigger: AGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGCCAGCTTTTCAGGCAGTTTCGTTACCAGGTGCTATCGGGGCCCCAGGAGACCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 90 bp CCACAGTTTCTGGGGTTCTCCCTTCAAGCTTTCCACGAGCGTCACTaGCTCCTGTCCACTGCCTGGACACTGCTTCCTCACCCACATCTG +
Preference number: 5 (lower is better)
Translates to: PQFLGFSLQAFHERH*LLSTAWTLLPHPHL
Trigger: CAGATGTGGGTGAGGAAGCAGTGTCCAGGCAGTGGACAGGAGGCAGTGACGCTCGTGGAAAGCTTGAAGGGAGAACCCCAGAAACTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 90 bp CACTGCTCCTCCTGTAGTGGTGGGAGAACTGCTGTTCCCAACTCTTaGTCTCTAACAGGCCTCTCCTCAGGTCTGGCAGGAAGCTGGGAA +
Preference number: 5 (lower is better)
Translates to: HCSSCSGGRTAVPNS*SLTGLSSGLAGSWE
Trigger: TTCCCAGCTTCCTGCCAGACCTGAGGAGAGGCCTGTTAGAGACCAAGAGTTGGGAACAGCAGTTCTCCCACCACTACAGGAGGAGCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CACATCAAAACAGTGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGAGCAGTCTCAGGGTaGGCAAGCTCTCTTTGCTGG +
Preference number: 5 (lower is better)
Translates to: HIKTVPSSSPSNTQRGGGRAVSG*ASSLCW
Trigger: CCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCG...ACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCACTGTTTTGATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 90 bp CTGAAAAGCTGGCGAGCAGTCTCAGGGTTGGCAAGCTCTCTTTGCTaGGTAGCATCTGATGCAGAGAATGTGGCATCCTCAGCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: LKSWRAVSGLASSLC*VASDAENVASSALA
Trigger: GGCCAAGGCTGAGGATGCCACATTCTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGCCAGCTTTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 90 bp GCGAGCAGTCTCAGGGTTGGCAAGCTCTCTTTGCTGGGTAGCATCTaGTGCAGAGAATGTGGCATCCTCAGCCTTGGCCAGAAAAGGAAG +
Preference number: 5 (lower is better)
Translates to: ASSLRVGKLSLLGSI*CRECGILSLGQKRK
Trigger: CTTCCTTTTCTGGCCAAGGCTGAGGATGCCACATTCTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 90 bp TGCCTGAAAAGCTGGCGAGCAGTCTCAGGGTTGGCAAGCTCTCTTTaGTGGGTAGCATCTGATGCAGAGAATGTGGCATCCTCAGCCTTG +
Preference number: 5 (lower is better)
Translates to: CLKSWRAVSGLASSL*WVASDAENVASSAL
Trigger: CAAGGCTGAGGATGCCACATTCTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGCCAGCTTTTCAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 90 bp CAAGGCAGTCAGTTCTCCCAAAGACGAGCTCTGTATGTGCTGACCTaGCTGTTTCCCAGAGCCCCTTTCATAAGGAAAGAGATGCGCCCC +
Preference number: 5 (lower is better)
Translates to: QGSQFSQRRALYVLT*LFPRAPFIRKEMRP
Trigger: GGGGCGCATCTCTTTCCTTATGAAAGGGGCTCTGGGAAACAGCCAGGTCAGCACATACAGAGCTCGTCTTTGGGAGAACTGACTGCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCCATGCTGTTCCCAACTCTaGGTCTCTAACAGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: LSLQHTERRRSFLVQALPCCSQL*VSNRPL
Trigger: GAGAGGCCTGTTAGAGACCAAGAGTTGGGAACAGCA...TGGAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 90 bp TGTCTGTCTTCTTTGCAGGGGAGTCTTGCCATCTTCTCAGCGCCGTaGAGGTGCAGGCCCACCAGCTCTTCCCCATATTCTGCTAAGTTA +
Preference number: 5 (lower is better)
Translates to: CLSSLQGSLAIFSAP*RCRPTSSSPYSAKL
Trigger: TAACTTAGCAGAATATGGGGAAGAGCTGGTGGGCCTGCACCTTCACGGCGCTGAGAAGATGGCAAGACTCCCCTGCAAAGAAGACAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 90 bp AACTCTTGGTCTCTAACAGGCCTCTCCTCAGGTCTGGCAGGAAGCTaGGAAGCAGCCAGAGCTAATTCTGGCTCCATGTCTGATTCCTCT +
Preference number: 5 (lower is better)
Translates to: NSWSLTGLSSGLAGS*EAARANSGSMSDSS
Trigger: AGAGGAATCAGACATGGAGCCAGAATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCAGACCTGAGGAGAGGCCTGTTAGAGACCAAGAGTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGTCAGTAGCTCCCCAGTaGCTGAGGATGAATTCTGAA +
Preference number: 5 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWSVAPQ*LRMNSE
Trigger: TTCAGAATTCATCCTCAGCAACTGGGGAGCTACTGA...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTAAGTCAGGTTTGGAGTaGGAAATGCCTGCTACTCCT +
Preference number: 5 (lower is better)
Translates to: QLLSLQHTERRRSFLVQAKSGLE*EMPATP
Trigger: AGGAGTAGCAGGCATTTCCAACTCCAAACCTGACTT...AGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCTCTTGTCTGTCTTCTTaGCAGGGGAGTCTTGCCATC +
Preference number: 5 (lower is better)
Translates to: SSPSNTQRGGGRFWSKLFSCLSS*QGSLAI
Trigger: GATGGCAAGACTCCCCTGCAAAGAAGACAGACAAGA...GAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 90 bp CTCACCGAAGAAATCACTCAAGGCAGTCTGTGGTGGAGCCTCACCTaGTGCCTGACAGAAAACATCCAGACATCCCTGGTCCCTGTGATT +
Preference number: 5 (lower is better)
Translates to: LTEEITQGSLWWSLT*CLTENIQTSLVPVI
Trigger: AATCACAGGGACCAGGGATGTCTGGATGTTTTCTGTCAGGCATCAGGTGAGGCTCCACCACAGACTGCCTTGAGTGATTTCTTCGGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCAAGCTCTTCTCAGTAGCTCCCCAGTaGCTGAGGATGAATTCTGAA +
Preference number: 5 (lower is better)
Translates to: SSPSNTQRGGGRFWSKLFSVAPQ*LRMNSE
Trigger: TTCAGAATTCATCCTCAGCAACTGGGGAGCTACTGA...GAAGAGCTTGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGTTAGTCAAGTCAGGTTaGGAGTTGGAAATGCCTGCT +
Preference number: 5 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWLVKSG*ELEMPA
Trigger: AGCAGGCATTTCCAACTCCAAACCTGACTTGACTAA...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TGCCCAGCTCCTCTCCCTCCAACACACAGAGAGGAGGAGGTCGTTTCTGGTCCACTCTTTGTCATTTTCTaGTCTGTCTTCTTTGCAGGG +
Preference number: 5 (lower is better)
Translates to: CPAPLPPTHREEEVVSGPLFVIF*SVFFAG
Trigger: CCCTGCAAAGAAGACAGACAAGAAAATGACAAAGAG...TGGACCAGAAACGACCTCCTCCTCTCTGTGTGTTGGAGGGAGAGGAGCTGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 90 bp TTCTCGAATGGAATCTCTTGTCCTAGAACTTGGGTGCTGATCCAGTaGCACAGTTTCTGGGGTTCTCCCTTCAAGCTTTCCACGAGCGTC +
Preference number: 5 (lower is better)
Translates to: FSNGISCPRTWVLIQ*HSFWGSPFKLSTSV
Trigger: GACGCTCGTGGAAAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGAGATTCCATTCGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CCTACCTCCCCTTCTGTGACAGCCTGCTCTAGAAGCCAGTCAGGCTCTCATTGGCTCTTTGTCATTTTCTaGTCTGTCTTCTTTGCAGGG +
Preference number: 5 (lower is better)
Translates to: PTSPSVTACSRSQSGSHWLFVIF*SVFFAG
Trigger: CCCTGCAAAGAAGACAGACAAGAAAATGACAAAGAG...CCAATGAGAGCCTGACTGGCTTCTAGAGCAGGCTGTCACAGAAGGGGAGGTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp GCTCAGTTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGGTGGCATCCTCAGCCTaGGCCAGAAAAGGAAGCGGG +
Preference number: 5 (lower is better)
Translates to: AQFISNKGQLDRNSVTSLVASSA*ARKGSG
Trigger: CCCGCTTCCTTTTCTGGCCAAGGCTGAGGATGCCAC...CAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAACTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTCGAGCAGTCTCAGGGTaGGCAAGCTCTCTTTGCTGG +
Preference number: 5 (lower is better)
Translates to: SRSQSGSHWRATKVIIYTRAVSG*ASSLCW
Trigger: CCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCG...AGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 90 bp AATTCTCCTTCTCGAATGGAATCTCTTGTCCTAGAACTTGGGTGCTaGTCCAGTGCCACAGTTTCTGGGGTTCTCCCTTCAAGCTTTCCA +
Preference number: 5 (lower is better)
Translates to: NSPSRMESLVLELGC*SSATVSGVLPSSFP
Trigger: TGGAAAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGAGATTCCATTCGAGAAGGAGAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp CTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTGTGCTGTTCCCAACTCTaGGTCTCTAACAGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: LEASQALIGELLKSLSTLCCSQL*VSNRPL
Trigger: GAGAGGCCTGTTAGAGACCAAGAGTTGGGAACAGCA...CAGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTTCTTGTCTGTCTTCTTaGCAGGGGAGTCTTGCCATC +
Preference number: 5 (lower is better)
Translates to: SRSQSGSHWRATKVIIYTSCLSS*QGSLAI
Trigger: GATGGCAAGACTCCCCTGCAAAGAAGACAGACAAGA...AGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TCTAGAAGCCAGTCAGGCTCTCATTGGAGAGCTACTAAAGTCATTATCTACACTTTAGTCAAGTCAGGTTaGGAGTTGGAAATGCCTGCT +
Preference number: 5 (lower is better)
Translates to: SRSQSGSHWRATKVIIYTLVKSG*ELEMPA
Trigger: AGCAGGCATTTCCAACTCCAAACCTGACTTGACTAA...AGTGTAGATAATGACTTTAGTAGCTCTCCAATGAGAGCCTGACTGGCTTCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS-3UTR CAA 90 bp TTTATTTCAAATAAAGGACAGTTAGACAGGAACTCTGTCACCAGTCTGACAAAGAAGTCAGGTTTGGAGTaGGAAATGCCTGCTACTCCT +
Preference number: 5 (lower is better)
Translates to: FISNKGQLDRNSVTSLTKKSGLE*EMPATP
Trigger: AGGAGTAGCAGGCATTTCCAACTCCAAACCTGACTT...CTTTGTCAGACTGGTGACAGAGTTCCTGTCTAACTGTCCTTTATTTGAAATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 72 bp ATTCTGAAGGGGCAGGTCCTGAGGTGCCACTTCCAGTaGGGGCTCCACCTCCAGTGCAGGCTCCAACTTGTC +
Preference number: 6 (lower is better)
Translates to: ILKGQVLRCHFQ*GLHLQCRLQLV
Trigger: GACAAGTTGGAGCCTGCACTGGAGGTGGAGCCCTCACTGGAAGTGGCACCTCAGGACCTGCCCCTTCAGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 72 bp CTGGGGTTCTCCCTTCAAGCTTTCCACGAGCGTCACTaGCTCCTGTCCACTGCCTGGACACTGCTTCCTCAC +
Preference number: 6 (lower is better)
Translates to: LGFSLQAFHERH*LLSTAWTLLPH
Trigger: GTGAGGAAGCAGTGTCCAGGCAGTGGACAGGAGGCAGTGACGCTCGTGGAAAGCTTGAAGGGAGAACCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 72 bp CCCAGTTCCCTCACCCTGATGGTTTTCCAGAGCCTCTaGGACACTGTCTCCTCCAAAGCGATGCGGCTCACT +
Preference number: 6 (lower is better)
Translates to: PSSLTLMVFQSL*DTVSSKAMRLT
Trigger: AGTGAGCCGCATCGCTTTGGAGGAGACAGTGTCCCAGAGGCTCTGGAAAACCATCAGGGTGAGGGAACTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CAA 72 bp TCCAGTGAGGGCTCCACCTCCAGTGCAGGCTCCAACTaGTCCCCAGGGCAGTGTGTCAAATTCTCCTTCTCG +
Preference number: 6 (lower is better)
Translates to: SSEGSTSSAGSN*SPGQCVKFSFS
Trigger: CGAGAAGGAGAATTTGACACACTGCCCTGGGGACAAGTTGGAGCCTGCACTGGAGGTGGAGCCCTCACTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 72 bp CTCAGGGTTGGCAAGCTCTCTTTGCTGGGTAGCATCTaGTGCAGAGAATGTGGCATCCTCAGCCTTGGCCAG +
Preference number: 6 (lower is better)
Translates to: LRVGKLSLLGSI*CRECGILSLGQ
Trigger: CTGGCCAAGGCTGAGGATGCCACATTCTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 72 bp TCCAGAGCCTCTGGGACACTGTCTCCTCCAAAGCGATaGGGCTCACTCTCACCGAAGAAATCACTCAAGGCA +
Preference number: 6 (lower is better)
Translates to: SRASGTLSPPKR*GSLSPKKSLKA
Trigger: TGCCTTGAGTGATTTCTTCGGTGAGAGTGAGCCGCATCGCTTTGGAGGAGACAGTGTCCCAGAGGCTCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 72 bp TCTCTAACAGGCCTCTCCTCAGGTCTGGCAGGAAGCTaGGAAGCAGCCAGAGCTAATTCTGGCTCCATGTCT +
Preference number: 6 (lower is better)
Translates to: SLTGLSSGLAGS*EAARANSGSMS
Trigger: AGACATGGAGCCAGAATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCAGACCTGAGGAGAGGCCTGTTAGAGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 72 bp GTCATTTTCTTGTCTGTCTTCTTTGCAGGGGAGTCTTaGCATCTTCTCAGCGCCGTGAAGGTGCAGGCCCAC +
Preference number: 6 (lower is better)
Translates to: VIFLSVFFAGES*HLLSAVKVQAH
Trigger: GTGGGCCTGCACCTTCACGGCGCTGAGAAGATGGCAAGACTCCCCTGCAAAGAAGACAGACAAGAAAATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 72 bp TGGCGAGCAGTCTCAGGGTTGGCAAGCTCTCTTTGCTaGGTAGCATCTGATGCAGAGAATGTGGCATCCTCA +
Preference number: 6 (lower is better)
Translates to: WRAVSGLASSLC*VASDAENVASS
Trigger: TGAGGATGCCACATTCTCTGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 72 bp CCTAGAACTTGGGTGCTGATCCAGTGCCACAGTTTCTaGGGTTCTCCCTTCAAGCTTTCCACGAGCGTCACT +
Preference number: 6 (lower is better)
Translates to: PRTWVLIQCHSF*GSPFKLSTSVT
Trigger: AGTGACGCTCGTGGAAAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CAA 72 bp CGAAACTGCCTGAAAAGCTGGCGAGCAGTCTCAGGGTaGGCAAGCTCTCTTTGCTGGGTAGCATCTGATGCA +
Preference number: 6 (lower is better)
Translates to: RNCLKSWRAVSG*ASSLCWVASDA
Trigger: TGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGCCAGCTTTTCAGGCAGTTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 72 bp GAAATCACTCAAGGCAGTCTGTGGTGGAGCCTCACCTaGTGCCTGACAGAAAACATCCAGACATCCCTGGTC +
Preference number: 6 (lower is better)
Translates to: EITQGSLWWSLT*CLTENIQTSLV
Trigger: GACCAGGGATGTCTGGATGTTTTCTGTCAGGCATCAGGTGAGGCTCCACCACAGACTGCCTTGAGTGATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CAA 72 bp TGTCATTTTCTTGTCTGTCTTCTTTGCAGGGGAGTCTaGCCATCTTCTCAGCGCCGTGAAGGTGCAGGCCCA +
Preference number: 6 (lower is better)
Translates to: CHFLVCLLCRGV*PSSQRREGAGP
Trigger: TGGGCCTGCACCTTCACGGCGCTGAGAAGATGGCAAGACTCCCCTGCAAAGAAGACAGACAAGAAAATGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS GCA 72 bp GGAATCTCTTGTCCTAGAACTTGGGTGCTGATCCAGTaGCACAGTTTCTGGGGTTCTCCCTTCAAGCTTTCC +
Preference number: 6 (lower is better)
Translates to: GISCPRTWVLIQ*HSFWGSPFKLS
Trigger: GGAAAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGAGATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 72 bp CAGTTCTCCCAAAGACGAGCTCTGTATGTGCTGACCTaGCTGTTTCCCAGAGCCCCTTTCATAAGGAAAGAG +
Preference number: 6 (lower is better)
Translates to: QFSQRRALYVLT*LFPRAPFIRKE
Trigger: CTCTTTCCTTATGAAAGGGGCTCTGGGAAACAGCCAGGTCAGCACATACAGAGCTCGTCTTTGGGAGAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS TCA 72 bp TCTCGAATGGAATCTCTTGTCCTAGAACTTGGGTGCTaGTCCAGTGCCACAGTTTCTGGGGTTCTCCCTTCA +
Preference number: 6 (lower is better)
Translates to: SRMESLVLELGC*SSATVSGVLPS
Trigger: TGAAGGGAGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGAGATTCCATTCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9
CDS CCA 72 bp TTCTCCTTCTCGAATGGAATCTCTTGTCCTAGAACTTaGGTGCTGATCCAGTGCCACAGTTTCTGGGGTTCT +
Preference number: 6 (lower is better)
Translates to: FSFSNGISCPRT*VLIQCHSFWGS
Trigger: AGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGAGATTCCATTCGAGAAGGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018491.8
ENSMUST00000071465.9