RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZKSCAN5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055991

Ensembl transcript IDs: ENSMUST00000031601.8, ENSMUST00000085671.10, ENSMUST00000161881.2, ENSMUST00000161896.2, ENSMUST00000162168.8

Found 201 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTGCACCGTaGACTCTAAGTTGCCCTCCTTGGGCTCGTAATCCACAGGAGTGG +
Preference number: 1 (lower is better)
Translates to: RPPSVGQLHRRPAAP*TLSCPPWARNPQEW
Trigger: CCACTCCTGTGGATTACGAGCCCAAGGAGGGCAACTTAGAGTTCACGGTGCAGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR TCA 90 bp GGCACCATGTCCTTCAGGTCGCTGACTTCGCCGGACTCTGGACGCTaGACACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTGGG +
Preference number: 1 (lower is better)
Translates to: GTMSFRSLTSPDSGR*TPFFSVRSAATQCG
Trigger: CCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCCGGCGAAGTCAGCGACCTGAAGGACATGGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR GCA 90 bp TTCGCCGGACTCTGGACGCTGAACACCATTCTTTTCCGTGCGTTCTaGGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTGCAC +
Preference number: 1 (lower is better)
Translates to: FAGLWTLNTILFRAF*GHPVWVSCIGDLLH
Trigger: GTGCAGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCCGGCGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR CCA 90 bp CCACCTCGGCACCATGTCCTTCAGGTCGCTGACTTCGCCGGACTCTaGACGCTGAACACCATTCTTTTCCGTGCGTTCTGCGGCCACCCA +
Preference number: 1 (lower is better)
Translates to: PPRHHVLQVADFAGL*TLNTILFRAFCGHP
Trigger: TGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCCGGCGAAGTCAGCGACCTGAAGGACATGGTGCCGAGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR TCA 90 bp AAGTGGGATTCACCTGCCACCTCGGCACCATGTCCTTCAGGTCGCTaGCTTCGCCGGACTCTGGACGCTGAACACCATTCTTTTCCGTGC +
Preference number: 1 (lower is better)
Translates to: KWDSPATSAPCPSGR*LRRTLDAEHHSFPC
Trigger: GCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCCGGCGAAGTCAGCGACCTGAAGGACATGGTGCCGAGGTGGCAGGTGAATCCCACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR GCA 90 bp TTCTGCTTCCGGTTAACATCCGGACCTGAGCGCAGAGGTCTTTTCTaGCTTGGATTCCCCGAAGTGGGATTCACCTGCCACCTCGGCACC +
Preference number: 1 (lower is better)
Translates to: FCFRLTSGPERRGLF*LGFPEVGFTCHLGT
Trigger: GGTGCCGAGGTGGCAGGTGAATCCCACTTCGGGGAATCCAAGGCAGAAAAGACCTCTGCGCTCAGGTCCGGATGTTAACCGGAAGCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR CCA 90 bp GGAGATCTCTGGGGCCCATCTGAGAGGAGTGAATCTGTCAGCTCCTaGCTGTCCTTCAGGGGAACGGAAGAAACCTGGAGAACAGGAAGG +
Preference number: 1 (lower is better)
Translates to: GDLWGPSERSESVSS*LSFRGTEETWRTGR
Trigger: CCTTCCTGTTCTCCAGGTTTCTTCCGTTCCCCTGAAGGACAGCCAGGAGCTGACAGATTCACTCCTCTCAGATGGGCCCCAGAGATCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
3UTR GCA 90 bp TGGGCTCGTAATCCACAGGAGTGGTACTCTCACAATCCTCCTTTCTaGTGTCCCTACCGAGAGACTTCTGGGACTGGTCCAAATGTGCCC +
Preference number: 1 (lower is better)
Translates to: WARNPQEWYSHNPPF*CPYRETSGTGPNVP
Trigger: GGGCACATTTGGACCAGTCCCAGAAGTCTCTCGGTAGGGACAGCAGAAAGGAGGATTGTGAGAGTACCACTCCTGTGGATTACGAGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR GCA 90 bp TCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTaGTATGTAAACCAGATGTTTGCCTGTCTCTCCCTCCCGAGGCAT +
Preference number: 1 (lower is better)
Translates to: SHPGVSLCRSGWPGT*YVNQMFACLSLPRH
Trigger: ATGCCTCGGGAGGGAGAGACAGGCAAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR CCA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTaGCCTGGAACTTGCTATGTAAACCAGATGTTTGCCTGTCTCTCC +
Preference number: 1 (lower is better)
Translates to: CLSVSHPGVSLCRSG*PGTCYVNQMFACLS
Trigger: GGAGAGACAGGCAAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR CCA 90 bp TTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTCTAAGTTGCCCTCCTTaGGCTCGTAATCCACAGGAG +
Preference number: 2 (lower is better)
Translates to: FPCVLRPPSVGQLHRRPALSCPP*ARNPQE
Trigger: CTCCTGTGGATTACGAGCCCAAGGAGGGCAACTTAG...AGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR-3UTR GCA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGATCGGAGCACCTGGGATaGTCCAGTGTCCCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGSEHLG*SSVPEG
Trigger: GCCTTCAGGGACACTGGAGCATCCCAGGTGCTCCGA...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR GCA 90 bp TTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTCACAATCCTCCTTTCTaGTGTCCCTACCGAGAGACT +
Preference number: 2 (lower is better)
Translates to: FPCVLRPPSVGQLHRRPAHNPPF*CPYRET
Trigger: AGTCTCTCGGTAGGGACAGCAGAAAGGAGGATTGTG...AGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR-3UTR TCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCAGGCTAAGCTCTACCTaGCAGGGCTTCCCCTCGTCT +
Preference number: 2 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCRLSST*QGFPSS
Trigger: AGACGAGGGGAAGCCCTGTCAGGTAGAGCTTAGCCT...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR GCA 90 bp GGACTCTGGACGCTGAACACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGCTAACCAGATCCTCCTaGCTCAGCTTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: GLWTLNTILFRAFCGHPVLTRSS*LSFPSS
Trigger: GCTACTTGGGAAGCTGAGGCAGGAGGATCTGGTTAG...CACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
3UTR-3UTR CCA 90 bp TCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTAGAGACTTCTGGGACTaGTCCAAATGTGCCCATTCC +
Preference number: 2 (lower is better)
Translates to: SFPCVLRPPSVGQLHRRPRDFWD*SKCAHS
Trigger: GGAATGGGCACATTTGGACCAGTCCCAGAAGTCTCT...AGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR-3UTR GCA 90 bp CTTGGATTCCCCGAAGTGGGATTCACCTGCCACCTCGGCACCATGTCCTTCAGGGGACTGGTCCAAATGTaGCCATTCCTCCAGGATGAA +
Preference number: 2 (lower is better)
Translates to: LGFPEVGFTCHLGTMSFRGLVQM*PFLQDE
Trigger: TTCATCCTGGAGGAATGGGCACATTTGGACCAGTCC...CCTGAAGGACATGGTGCCGAGGTGGCAGGTGAATCCCACTTCGGGGAATCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR-3UTR CCA 90 bp ACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAAGAGACTTCTGGGACTaGTCCAAATGTGCCCATTCC +
Preference number: 2 (lower is better)
Translates to: TILFRAFCGHPVWVSCIGRDFWD*SKCAHS
Trigger: GGAATGGGCACATTTGGACCAGTCCCAGAAGTCTCT...TCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR-3UTR CCA 90 bp TTTCTGCCTTGGATTCCCCGAAGTGGGATTCACCTGCCACCTCGGCACCATGTCCGTAATCCACAGGAGTaGTACTCTCACAATCCTCCT +
Preference number: 2 (lower is better)
Translates to: FLPWIPRSGIHLPPRHHVRNPQE*YSHNPP
Trigger: AGGAGGATTGTGAGAGTACCACTCCTGTGGATTACG...GACATGGTGCCGAGGTGGCAGGTGAATCCCACTTCGGGGAATCCAAGGCAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR-3UTR TCA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTATGCTGTTACACATATaGGAGCCATGGAAGGCTTCT +
Preference number: 2 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPMLLHI*EPWKAS
Trigger: AGAAGCCTTCCATGGCTCTCATATGTGTAACAGCAT...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR TCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTAGGCTAAGCTCTACCTaGCAGGGCTTCCCCTCGTCT +
Preference number: 2 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSRLSST*QGFPSS
Trigger: AGACGAGGGGAAGCCCTGTCAGGTAGAGCTTAGCCT...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR GCA 90 bp CTGAAATGGGAGATCTCTGGGGCCCATCTGAGAGGAGTGAATCTGTCAGCTCCTGGACTGGTCCAAATGTaGCCATTCCTCCAGGATGAA +
Preference number: 2 (lower is better)
Translates to: LKWEISGAHLRGVNLSAPGLVQM*PFLQDE
Trigger: TTCATCCTGGAGGAATGGGCACATTTGGACCAGTCC...AGGAGCTGACAGATTCACTCCTCTCAGATGGGCCCCAGAGATCTCCCATTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
3UTR-3UTR CCA 90 bp CCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAGCTATGCTGTTGAGGTaGAAACTACAAATGAGCTTA +
Preference number: 2 (lower is better)
Translates to: PVAGAVVSRDVPRWASRGAMLLR*KLQMSL
Trigger: TAAGCTCATTTGTAGTTTCCACCTCAACAGCATAGC...TCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR TCA 90 bp AGTACTCCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCAATGCTGTTACACATATaGGAGCCATGGAAGGCTTCT +
Preference number: 2 (lower is better)
Translates to: STPVAGAVVSRDVPRWASMLLHI*EPWKAS
Trigger: AGAAGCCTTCCATGGCTCTCATATGTGTAACAGCAT...TGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGGAGTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR GCA 90 bp GAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGACTCTTTGTTATTCGGAGCACCTGGGATaGTCCAGTGTCCCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: EVETTNELMSTALMTLCYSEHLG*SSVPEG
Trigger: GCCTTCAGGGACACTGGAGCATCCCAGGTGCTCCGA...ATAACAAAGAGTCATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR-3UTR GCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGGCTGGCCTGGAACTTaGTATGTAAACCAGATGTTT +
Preference number: 2 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPEGWPGT*YVNQMF
Trigger: AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCC...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR GCA 72 bp CGCCGGACTCTGGACGCTGAACACCATTCTTTTCCGTaGGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCAT +
Preference number: 3 (lower is better)
Translates to: RRTLDAEHHSFP*VLRPPSVGQLH
Trigger: ATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCCGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR TCA 72 bp TCCTTCAGGTCGCTGACTTCGCCGGACTCTGGACGCTaGACACCATTCTTTTCCGTGCGTTCTGCGGCCACC +
Preference number: 3 (lower is better)
Translates to: SFRSLTSPDSGR*TPFFSVRSAAT
Trigger: GGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCCGGCGAAGTCAGCGACCTGAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR TCA 72 bp TCACCTGCCACCTCGGCACCATGTCCTTCAGGTCGCTaGCTTCGCCGGACTCTGGACGCTGAACACCATTCT +
Preference number: 3 (lower is better)
Translates to: SPATSAPCPSGR*LRRTLDAEHHS
Trigger: AGAATGGTGTTCAGCGTCCAGAGTCCGGCGAAGTCAGCGACCTGAAGGACATGGTGCCGAGGTGGCAGGTGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR GCA 72 bp CTCTGGACGCTGAACACCATTCTTTTCCGTGCGTTCTaGGGCCACCCAGTGTGGGTCAGCTGCATCGGAGAC +
Preference number: 3 (lower is better)
Translates to: LWTLNTILFRAF*GHPVWVSCIGD
Trigger: GTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR CCA 72 bp ACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTaGGTCAGCTGCATCGGAGACCTGCTGCACCGTGAA +
Preference number: 3 (lower is better)
Translates to: TILFRAFCGHPV*VSCIGDLLHRE
Trigger: TTCACGGTGCAGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR CCA 72 bp TGGGGCCCATCTGAGAGGAGTGAATCTGTCAGCTCCTaGCTGTCCTTCAGGGGAACGGAAGAAACCTGGAGA +
Preference number: 3 (lower is better)
Translates to: WGPSERSESVSS*LSFRGTEETWR
Trigger: TCTCCAGGTTTCTTCCGTTCCCCTGAAGGACAGCCAGGAGCTGACAGATTCACTCCTCTCAGATGGGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
3UTR TCA 72 bp GCCATTCGATTTCTGCTTCCGGTTAACATCCGGACCTaGGCGCAGAGGTCTTTTCTGCCTTGGATTCCCCGA +
Preference number: 3 (lower is better)
Translates to: AIRFLLPVNIRT*AQRSFLPWIPR
Trigger: TCGGGGAATCCAAGGCAGAAAAGACCTCTGCGCTCAGGTCCGGATGTTAACCGGAAGCAGAAATCGAATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
3UTR CCA 72 bp CAATCCTCCTTTCTGCTGTCCCTACCGAGAGACTTCTaGGACTGGTCCAAATGTGCCCATTCCTCCAGGATG +
Preference number: 3 (lower is better)
Translates to: QSSFLLSLPRDF*DWSKCAHSSRM
Trigger: CATCCTGGAGGAATGGGCACATTTGGACCAGTCCCAGAAGTCTCTCGGTAGGGACAGCAGAAAGGAGGATTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR GCA 72 bp AATCCACAGGAGTGGTACTCTCACAATCCTCCTTTCTaGTGTCCCTACCGAGAGACTTCTGGGACTGGTCCA +
Preference number: 3 (lower is better)
Translates to: NPQEWYSHNPPF*CPYRETSGTGP
Trigger: TGGACCAGTCCCAGAAGTCTCTCGGTAGGGACAGCAGAAAGGAGGATTGTGAGAGTACCACTCCTGTGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR CCA 72 bp CTAAGTTGCCCTCCTTGGGCTCGTAATCCACAGGAGTaGTACTCTCACAATCCTCCTTTCTGCTGTCCCTAC +
Preference number: 3 (lower is better)
Translates to: LSCPPWARNPQE*YSHNPPFCCPY
Trigger: GTAGGGACAGCAGAAAGGAGGATTGTGAGAGTACCACTCCTGTGGATTACGAGCCCAAGGAGGGCAACTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
3UTR GCA 72 bp GGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTaGTATGTAAACCAGATGTTTGCCTGTCTCTCCCTC +
Preference number: 3 (lower is better)
Translates to: GVSLCRSGWPGT*YVNQMFACLSL
Trigger: GAGGGAGAGACAGGCAAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
3UTR TCA 72 bp CTGATGGTTAAGATGGCTAAGATGCTGTTACACATATaGGAGCCATGGAAGGCTTCTCTAAAGCCAGGCCGC +
Preference number: 3 (lower is better)
Translates to: LMVKMAKMLLHI*EPWKASLKPGR
Trigger: GCGGCCTGGCTTTAGAGAAGCCTTCCATGGCTCTCATATGTGTAACAGCATCTTAGCCATCTTAACCATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTGCACCGTTTCCAGAAGATTCTGTaGCTCTCGCTCGGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: AFCGHPVWVSCIGDLLHRFQKIL*LSLGLG
Trigger: GCCCAGCCCGAGCGAGAGTCACAGAATCTTCTGGAA...ACGGTGCAGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
CDS-3UTR TCA 90 bp GGACTCTGGACGCTGAACACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTCCCCACTCTCGGGGTaGTGCTCTCTCACCCAGGCC +
Preference number: 4 (lower is better)
Translates to: GLWTLNTILFRAFCGHPVSPLSG*CSLTQA
Trigger: GGCCTGGGTGAGAGAGCATCACCCCGAGAGTGGGGA...CACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR GCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCGCGGACACTGGCAGGTaGTGTCCCTGCATGCGTCGC +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCADTGR*CPCMRR
Trigger: GCGACGCATGCAGGGACAGCACCTGCCAGTGTCCGC...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GGACTCTGGACGCTGAACACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTTCCAGAAGATTCTGTaGCTCTCGCTCGGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: GLWTLNTILFRAFCGHPVFQKIL*LSLGLG
Trigger: GCCCAGCCCGAGCGAGAGTCACAGAATCTTCTGGAA...CACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTTCAGCGTCCAGAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161896.2
ENSMUST00000162168.8
CDS-3UTR TCA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTGGTGCGCGCTCTGGATaGAGCTTTTCCCGCACTCGT +
Preference number: 4 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPGARSG*SFSRTR
Trigger: ACGAGTGCGGGAAAAGCTTCATCCAGAGCGCGCACC...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp TTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTACCACAACTGTTGTCTaGGCTCCTCCAGCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: FPCVLRPPSVGQLHRRPATTTVV*APPALS
Trigger: AGAGAGAGCTGGAGGAGCGCAGACAACAGTTGTGGT...AGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR CCA 90 bp CCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAGCTGCCTCATGGTACTaGAAGTGCTTGAAGCGCTGG +
Preference number: 4 (lower is better)
Translates to: PVAGAVVSRDVPRWASRGAASWY*KCLKRW
Trigger: CCAGCGCTTCAAGCACTTCCAGTACCATGAGGCAGC...TCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp CACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGGCTGCCTCATGGTACTaGAAGTGCTTGAAGCGCTGG +
Preference number: 4 (lower is better)
Translates to: HHSFPCVLRPPSVGQLHRAASWY*KCLKRW
Trigger: CCAGCGCTTCAAGCACTTCCAGTACCATGAGGCAGC...CCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR TCA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGATCCCCACTCTCGGGGTaGTGCTCTCTCACCCAGGCC +
Preference number: 4 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGSPLSG*CSLTQA
Trigger: GGCCTGGGTGAGAGAGCATCACCCCGAGAGTGGGGA...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTCCAGAAGATTCTGTaGCTCTCGCTCGGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPFQKIL*LSLGLG
Trigger: GCCCAGCCCGAGCGAGAGTCACAGAATCTTCTGGAA...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp CCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGATCCTCCGGTGCTGAATaGAGTTTGAGGCTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: PVAGAVVSRDVPRWASRGSSGAE*SLRLGG
Trigger: TCCTCCAAGCCTCAAACTTCATTCAGCACCGGAGGA...TCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTGGCCGGTTGTATCCCTaGATCCAGGAGCAGTCCTCT +
Preference number: 4 (lower is better)
Translates to: AGAVVSRDVPRWASRGRVGRLYP*IQEQSS
Trigger: AGAGGACTGCTCCTGGATGCAGGGATACAACCGGCC...AACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp CCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGATTTATGTGCGGACACTaGCAGGTGCTGTCCCTGCAT +
Preference number: 4 (lower is better)
Translates to: PVAGAVVSRDVPRWASRGFMCGH*QVLSLH
Trigger: ATGCAGGGACAGCACCTGCCAGTGTCCGCACATAAA...TCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCGGAGACCTGCTGCACCGTCTTCTACTTTCACTATaGGAAGGTCTGCTTGCTCTT +
Preference number: 4 (lower is better)
Translates to: AFCGHPVWVSCIGDLLHRLLLSL*EGLLAL
Trigger: AAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAG...ACGGTGCAGCAGGTCTCCGATGCAGCTGACCCACACTGGGTGGCCGCAGAACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR TCA 90 bp CCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAGGTGGTACCATCTTCTaGGGAAGTACTTCGGGACTT +
Preference number: 4 (lower is better)
Translates to: PVAGAVVSRDVPRWASRGGGTIF*GSTSGL
Trigger: AAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACC...TCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AGTACTCCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCATTCCAGAAGATTCTGTaGCTCTCGCTCGGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: STPVAGAVVSRDVPRWASFQKIL*LSLGLG
Trigger: GCCCAGCCCGAGCGAGAGTCACAGAATCTTCTGGAA...TGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGGAGTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGACCGCTGTGCACGCTGTaGTGCTGCACCAGATGGGAG +
Preference number: 4 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGPLCTL*CCTRWE
Trigger: CTCCCATCTGGTGCAGCATCACAGCGTGCACAGCGG...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AGTACTCCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCATCACAGCCCTCACTGTaGCCTTCAGCCTGGCAAGCA +
Preference number: 4 (lower is better)
Translates to: STPVAGAVVSRDVPRWASSQPSL*PSAWQA
Trigger: TGCTTGCCAGGCTGAAGGTCACAGTGAGGGCTGTGA...TGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGGAGTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp CTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTTGGATTCTCCGATGCTaGATGAGGTGCGCGCTCTGG +
Preference number: 4 (lower is better)
Translates to: LSLTQGSHYVDLAGLELAWILRC*MRCALW
Trigger: CCAGAGCGCGCACCTCATTCAGCATCGGAGAATCCA...AGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGCCACACTCATTGCACTaGTGGGATTTCCCACTGGGG +
Preference number: 4 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMPHSLH*WDFPLG
Trigger: CCCCAGTGGGAAATCCCATCAGTGCAATGAGTGTGG...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp AGTACTCCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCAGGCCGGTTGTATCCCTaGATCCAGGAGCAGTCCTCT +
Preference number: 4 (lower is better)
Translates to: STPVAGAVVSRDVPRWASGRLYP*IQEQSS
Trigger: AGAGGACTGCTCCTGGATGCAGGGATACAACCGGCC...TGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGGAGTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp CCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAGGTACTGGAAGTGCTTaGAGCGCTGGTAAAAAGTCT +
Preference number: 4 (lower is better)
Translates to: PVAGAVVSRDVPRWASRGGTGSA*SAGKKS
Trigger: AGACTTTTTACCAGCGCTTCAAGCACTTCCAGTACC...TCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GGTCTTTTCTGCCTTGGATTCCCCGAAGTGGGATTCACCTGCCACCTCGGCACCGGTGGTACCATCTTCTaGGGAAGTACTTCGGGACTT +
Preference number: 4 (lower is better)
Translates to: GLFCLGFPEVGFTCHLGTGGTIF*GSTSGL
Trigger: AAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACC...GGTGCCGAGGTGGCAGGTGAATCCCACTTCGGGGAATCCAAGGCAGAAAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR TCA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGACGCGGTGATGTTGAGTaGGGTGGACACGTTGGTTGT +
Preference number: 4 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGRGDVE*GGHVGC
Trigger: ACAACCAACGTGTCCACCTCACTCAACATCACCGCG...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AGTACTCCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCATGCACACTCTGGTGTTaGACGAGGTGGGACCTCACT +
Preference number: 4 (lower is better)
Translates to: STPVAGAVVSRDVPRWASCTLWC*TRWDLT
Trigger: AGTGAGGTCCCACCTCGTTCAACACCAGAGTGTGCA...TGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGGAGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTGATGGGACTTCAGACTaGAGCCCCTTCCACACTCAT +
Preference number: 4 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPDGTSD*SPFHTH
Trigger: ATGAGTGTGGAAGGGGCTTCAGTCTGAAGTCCCATC...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp CTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCGATGGGACTTCAGACTaGAGCCCCTTCCACACTCAT +
Preference number: 4 (lower is better)
Translates to: LGQSCPEMYQDGLHAEEFDGTSD*SPFHTH
Trigger: ATGAGTGTGGAAGGGGCTTCAGTCTGAAGTCCCATC...GAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp ATCCTCCTTTCTGCTGTCCCTACCGAGAGACTTCTGGGACTGGTCCAAATGTGCGGCCGGTTGTATCCCTaGATCCAGGAGCAGTCCTCT +
Preference number: 4 (lower is better)
Translates to: ILLSAVPTERLLGLVQMCGRLYP*IQEQSS
Trigger: AGAGGACTGCTCCTGGATGCAGGGATACAACCGGCC...GCACATTTGGACCAGTCCCAGAAGTCTCTCGGTAGGGACAGCAGAAAGGAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR GCA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTGGCAATCTGTTGTCTaGGCTCCTCCAGCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMWQSVV*APPALS
Trigger: AGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCA...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGACTTTTCCGTGCGTTCTaGGGCCACCCAGTGTGGGTC +
Preference number: 4 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGLFRAF*GHPVWV
Trigger: GACCCACACTGGGTGGCCGCAGAACGCACGGAAAAG...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp CTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTGGTGCTGTCCCTGCATaGGTCGCATTTCTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: LSLTQGSHYVDLAGLELAGAVPA*VAFLGF
Trigger: AAACCCCAGAAATGCGACGCATGCAGGGACAGCACC...AGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GGTCTTTTCTGCCTTGGATTCCCCGAAGTGGGATTCACCTGCCACCTCGGCACCTCCTCCAGCTCTCTCTaGATACTCTCTATCACAGCC +
Preference number: 4 (lower is better)
Translates to: GLFCLGFPEVGFTCHLGTSSSSL*ILSITA
Trigger: GGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGA...GGTGCCGAGGTGGCAGGTGAATCCCACTTCGGGGAATCCAAGGCAGAAAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR CCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCGTGTGGCCTCTCTCCTaGAGACGACTTCTTGTGGAC +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCVWPLS*RRLLVD
Trigger: GTCCACAAGAAGTCGTCTCCAGGAGAGAGGCCACAC...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGCTCGTTACATTGGTGTaGCCTCTCTCCTGGAGACGA +
Preference number: 4 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMLVTLV*PLSWRR
Trigger: TCGTCTCCAGGAGAGAGGCCACACCAATGTAACGAG...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTCTCTTCTGGCCCACATaGAGCACTTGGTGTTCAAGG +
Preference number: 4 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPLFWPT*STWCSR
Trigger: CCTTGAACACCAAGTGCTCCATGTGGGCCAGAAGAG...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTCTTCTCGCTCTTCTaGCCCACATGGAGCACTTGG +
Preference number: 4 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPFFSLF*PTWSTW
Trigger: CCAAGTGCTCCATGTGGGCCAGAAGAGCGAGAAGAA...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAGAATCTGTCAGCTCCTaGCTGTCCTTCAGGGGAACG +
Preference number: 4 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGESVSS*LSFRGT
Trigger: CGTTCCCCTGAAGGACAGCCAGGAGCTGACAGATTC...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp CCGAGAGACTTCTGGGACTGGTCCAAATGTGCCCATTCCTCCAGGATGAAGGACGAATCTGTCAGCTCCTaGCTGTCCTTCAGGGGAACG +
Preference number: 4 (lower is better)
Translates to: PRDFWDWSKCAHSSRMKDESVSS*LSFRGT
Trigger: CGTTCCCCTGAAGGACAGCCAGGAGCTGACAGATTC...GTCCTTCATCCTGGAGGAATGGGCACATTTGGACCAGTCCCAGAAGTCTCTCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR CCA 90 bp GCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCTACCGAGAGACTTCTaGGACTGGTCCAAATGTGCC +
Preference number: 4 (lower is better)
Translates to: AGAVVSRDVPRWASRGRVLPRDF*DWSKCA
Trigger: GGCACATTTGGACCAGTCCCAGAAGTCTCTCGGTAG...AACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGATGGATCCTCCGGTGCTaGATGAAGTTTGAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGWILRC*MKFEAW
Trigger: CCAAGCCTCAAACTTCATTCAGCACCGGAGGATCCA...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTTGGATTCTCCGATGCTaGATGAGGTGCGCGCTCTGG +
Preference number: 4 (lower is better)
Translates to: EVSVCLSVSHPGVSLCRSWILRC*MRCALW
Trigger: CCAGAGCGCGCACCTCATTCAGCATCGGAGAATCCA...AGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp CTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCGGCTACAGCTCCAACTaGAACTCATTCCACACTCCT +
Preference number: 4 (lower is better)
Translates to: LGQSCPEMYQDGLHAEEFGYSSN*NSFHTP
Trigger: AGGAGTGTGGAATGAGTTTCAGTTGGAGCTGTAGCC...GAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCGGTCCTGCTGCCTCATaGTACTGGAAGTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCGPAAS*YWKCLK
Trigger: CTTCAAGCACTTCCAGTACCATGAGGCAGCAGGACC...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGTGTGGCCTCTCTCCTaGAGACGACTTCTTGTGGAC +
Preference number: 4 (lower is better)
Translates to: SFIHRTQRCLSVCLSLTQVWPLS*RRLLVD
Trigger: GTCCACAAGAAGTCGTCTCCAGGAGAGAGGCCACAC...CTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCCTCGTTACATTGGTGTaGCCTCTCTCCTGGAGACGA +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCLVTLV*PLSWRR
Trigger: TCGTCTCCAGGAGAGAGGCCACACCAATGTAACGAG...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp CGCAGAGGTCTTTTCTGCCTTGGATTCCCCGAAGTGGGATTCACCTGCCACCTCGTTTTCACCAACTTCTaGGGCCCATCTGAGAGGAGT +
Preference number: 4 (lower is better)
Translates to: RRGLFCLGFPEVGFTCHLVFTNF*GPSERS
Trigger: ACTCCTCTCAGATGGGCCCCAGAAGTTGGTGAAAAC...GAGGTGGCAGGTGAATCCCACTTCGGGGAATCCAAGGCAGAAAAGACCTCTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR CCA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGAGAGACTTCTGGGACTaGTCCAAATGTGCCCATTCC +
Preference number: 4 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMRDFWD*SKCAHS
Trigger: GGAATGGGCACATTTGGACCAGTCCCAGAAGTCTCT...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp AGTACTCCAGTGGCTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACTAAGTTGCCCTCCTTaGGCTCGTAATCCACAGGAG +
Preference number: 4 (lower is better)
Translates to: STPVAGAVVSRDVPRWASLSCPP*ARNPQE
Trigger: CTCCTGTGGATTACGAGCCCAAGGAGGGCAACTTAG...TGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAGCCACTGGAGTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCCCGCTGTGCACGCTGTaGTGCTGCACCAGATGGGAG +
Preference number: 4 (lower is better)
Translates to: KQCHVKTFLYPQDPEVSVPLCTL*CCTRWE
Trigger: CTCCCATCTGGTGCAGCATCACAGCGTGCACAGCGG...GACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCCTAGGGTTTCTTTCATaGCAACCCCCTGCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCLGFLS*QPPAVH
Trigger: ATGGACAGCAGGGGGTTGTCATGAAAGAAACCCTAG...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCAATCGCGGGGTCCTGCTaGCTCATGGTACTGGAAGTG +
Preference number: 4 (lower is better)
Translates to: DFPLSTGPRGVCLSVCLSIAGSC*LMVLEV
Trigger: CACTTCCAGTACCATGAGGCAGCAGGACCCCGCGAT...TGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCATCGATCAGATGCGAGTaGCGCCCAAAGCTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: DFPLSTGPRGVCLSVCLSSIRCE*RPKLFP
Trigger: CGGGAAGAGCTTTGGGCGGCACTCGCATCTGATCGA...TGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp TCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGAAGTGGCGCTTCAGATaGTCGATCAGATGCGAGTGC +
Preference number: 4 (lower is better)
Translates to: SFIHRTQRCLSVCLSLTQKWRFR*SIRCEC
Trigger: GCACTCGCATCTGATCGAGCATCTGAAGCGCCACTT...CTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTCCTCCAGCTCTCTCTaGATACTCTCTATCACAGCC +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCSSSSL*ILSITA
Trigger: GGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGA...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGCTCTTCTGGCCCACATaGAGCACTTGGTGTTCAAGG +
Preference number: 4 (lower is better)
Translates to: SFIHRTQRCLSVCLSLTQLFWPT*STWCSR
Trigger: CCTTGAACACCAAGTGCTCCATGTGGGCCAGAAGAG...CTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp TCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGTGGTACCATCTTCTaGGGAAGTACTTCGGGACTT +
Preference number: 4 (lower is better)
Translates to: SFIHRTQRCLSVCLSLTQGGTIF*GSTSGL
Trigger: AAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACC...CTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTTCCAGGTCTGCTTCTaGAAGTCCTGGAATTTGCTT +
Preference number: 4 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMFQVCF*KSWNLL
Trigger: AAGCAAATTCCAGGACTTTCAGAAGCAGACCTGGAA...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACGCGGTGATGTTGAGTaGGGTGGACACGTTGGTTGT +
Preference number: 4 (lower is better)
Translates to: DFPLSTGPRGVCLSVCLSRGDVE*GGHVGC
Trigger: ACAACCAACGTGTCCACCTCACTCAACATCACCGCG...TGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGATGGCAATCTGTTGTCTaGGCTCCTCCAGCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGWQSVV*APPALS
Trigger: AGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCA...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGCGGACACTGGCAGGTaGTGTCCCTGCATGCGTCGC +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPEADTGR*CPCMRR
Trigger: GCGACGCATGCAGGGACAGCACCTGCCAGTGTCCGC...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAGGGCAGCTTTTCTGTTaGTGTTTTATGTGCGGACAC +
Preference number: 4 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGGQLFC*CFMCGH
Trigger: GTGTCCGCACATAAAACAGCAACAGAAAAGCTGCCC...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCGGGCAGCTTTTCTGTTaGTGTTTTATGTGCGGACAC +
Preference number: 4 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCGQLFC*CFMCGH
Trigger: GTGTCCGCACATAAAACAGCAACAGAAAAGCTGCCC...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp CTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTCGTAATCCACAGGAGTaGTACTCTCACAATCCTCCT +
Preference number: 4 (lower is better)
Translates to: LSLTQGSHYVDLAGLELARNPQE*YSHNPP
Trigger: AGGAGGATTGTGAGAGTACCACTCCTGTGGATTACG...AGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp TGTCAGCTCCTGGCTGTCCTTCAGGGGAACGGAAGAAACCTGGAGAACAGGAAGCCCTGCAGTATGGACTaGTCTATTGACAAGGCCATT +
Preference number: 4 (lower is better)
Translates to: CQLLAVLQGNGRNLENRKPCSMD*SIDKAI
Trigger: AATGGCCTTGTCAATAGACCAGTCCATACTGCAGGG...CTTCCTGTTCTCCAGGTTTCTTCCGTTCCCCTGAAGGACAGCCAGGAGCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
CDS-3UTR TCA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGCTTCTACTTTCACTATaGGAAGGTCTGCTTGCTCTT +
Preference number: 4 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMLLLSL*EGLLAL
Trigger: AAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAG...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AACACCATTCTTTTCCGTGCGTTCTGCGGCCACCCAGTGTGGGTCAGCTGCATCTATGGACTGGTCTATTaGCAAGGCCATTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: NTILFRAFCGHPVWVSCIYGLVY*QGHFLP
Trigger: TGGAAGAAAATGGCCTTGTCAATAGACCAGTCCATA...GATGCAGCTGACCCACACTGGGTGGCCGCAGAACGCACGGAAAAGAATGGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
CDS-3UTR GCA 90 bp GAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTTGTTGCTGTTTTATGTaGGGACACTGGCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: EVSVCLSVSHPGVSLCRSCCCFM*GHWQVL
Trigger: CAGCACCTGCCAGTGTCCGCACATAAAACAGCAACA...AGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGAGTTTTCACCAACTTCTaGGGCCCATCTGAGAGGAGT +
Preference number: 4 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGVFTNF*GPSERS
Trigger: ACTCCTCTCAGATGGGCCCCAGAAGTTGGTGAAAAC...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGACTCTTTGTTATTCCCCACTCTCGGGGTaGTGCTCTCTCACCCAGGCC +
Preference number: 4 (lower is better)
Translates to: EVETTNELMSTALMTLCYSPLSG*CSLTQA
Trigger: GGCCTGGGTGAGAGAGCATCACCCCGAGAGTGGGGA...ATAACAAAGAGTCATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTTCCTCCGGTGCTGAATaGAGTTTGAGGCTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSSSGAE*SLRLGG
Trigger: TCCTCCAAGCCTCAAACTTCATTCAGCACCGGAGGA...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCTCGTGACACTGGTGTaGCTTGTCTCTAGAGTGGAG +
Preference number: 4 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSLVTLV*LVSRVE
Trigger: CTCCACTCTAGAGACAAGTCACACCAGTGTCACGAG...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTATGTAAACCAGATGTTTATCGCGGGGTCCTGCTaGCTCATGGTACTGGAAGTG +
Preference number: 4 (lower is better)
Translates to: VSLCRSGWPGTCYVNQMFIAGSC*LMVLEV
Trigger: CACTTCCAGTACCATGAGGCAGCAGGACCCCGCGAT...AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGCTTTTCCGTGCGTTCTaGGGCCACCCAGTGTGGGTC +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPELFRAF*GHPVWV
Trigger: GACCCACACTGGGTGGCCGCAGAACGCACGGAAAAG...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCAGGATCTGTCCTCTCGTaGCTACGCAGATGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: DFPLSTGPRGVCLSVCLSGSVLS*LRRCLK
Trigger: CTTCAAACATCTGCGTAGCCACGAGAGGACAGATCC...TGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCTAGGGTTTCTTTCATaGCAACCCCCTGCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSLGFLS*QPPAVH
Trigger: ATGGACAGCAGGGGGTTGTCATGAAAGAAACCCTAG...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTGGACTGGTCCAAATGTaGCCATTCCTCCAGGATGAA +
Preference number: 4 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSGLVQM*PFLQDE
Trigger: TTCATCCTGGAGGAATGGGCACATTTGGACCAGTCC...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGCCCTGCTGTCCATCCTaGTGTTCACAGCCCTCACTG +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPEPCCPS*CSQPSL
Trigger: CAGTGAGGGCTGTGAACACCAGGATGGACAGCAGGG...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp AAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTTCTTCTCGCTCTTCTaGCCCACATGGAGCACTTGG +
Preference number: 4 (lower is better)
Translates to: KQCHVKTFLYPQDPEVSVFFSLF*PTWSTW
Trigger: CCAAGTGCTCCATGTGGGCCAGAAGAGCGAGAAGAA...GACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTGGATCTGTCCTCTCGTaGCTACGCAGATGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSGSVLS*LRRCLK
Trigger: CTTCAAACATCTGCGTAGCCACGAGAGGACAGATCC...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGACTTCTACTTTCACTATaGGAAGGTCTGCTTGCTCTT +
Preference number: 4 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGLLLSL*EGLLAL
Trigger: AAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAG...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGTGCACACTCTGGTGTTaGACGAGGTGGGACCTCACT +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPECTLWC*TRWDLT
Trigger: AGTGAGGTCCCACCTCGTTCAACACCAGAGTGTGCA...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTATGTAAACCAGATGTTTCTCGTGACACTGGTGTaGCTTGTCTCTAGAGTGGAG +
Preference number: 4 (lower is better)
Translates to: VSLCRSGWPGTCYVNQMFLVTLV*LVSRVE
Trigger: CTCCACTCTAGAGACAAGTCACACCAGTGTCACGAG...AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AGCTATGCTGTTGAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGCCACACTCATTGCACTaGTGGGATTTCCCACTGGGG +
Preference number: 4 (lower is better)
Translates to: SYAVEVETTNELMSTALMPHSLH*WDFPLG
Trigger: CCCCAGTGGGAAATCCCATCAGTGCAATGAGTGTGG...CATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTCAACAGCATAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTATGTAAACCAGATGTTTAAGTGGCGCTTCAGATaGTCGATCAGATGCGAGTGC +
Preference number: 4 (lower is better)
Translates to: VSLCRSGWPGTCYVNQMFKWRFR*SIRCEC
Trigger: GCACTCGCATCTGATCGAGCATCTGAAGCGCCACTT...AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGCTGCCTCATGGTACTaGAAGTGCTTGAAGCGCTGG +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPEAASWY*KCLKRW
Trigger: CCAGCGCTTCAAGCACTTCCAGTACCATGAGGCAGC...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTATGTAAACCAGATGTTTGGTCCTGCTGCCTCATaGTACTGGAAGTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: VSLCRSGWPGTCYVNQMFGPAAS*YWKCLK
Trigger: CTTCAAGCACTTCCAGTACCATGAGGCAGCAGGACC...AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTATGTAAACCAGATGTTTTTTATGTGCGGACACTaGCAGGTGCTGTCCCTGCAT +
Preference number: 4 (lower is better)
Translates to: VSLCRSGWPGTCYVNQMFFMCGH*QVLSLH
Trigger: ATGCAGGGACAGCACCTGCCAGTGTCCGCACATAAA...AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGAC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCAGTGCTGAATGAAGTTTaGGGCTTGGAGGAAAAACTT +
Preference number: 4 (lower is better)
Translates to: DFPLSTGPRGVCLSVCLSVLNEV*GLEEKL
Trigger: AAGTTTTTCCTCCAAGCCTCAAACTTCATTCAGCAC...TGAGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp GTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTATGTAAACCAGATGTTTTGTTGCTGTTTTATGTaGGGACACTGGCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: VSLCRSGWPGTCYVNQMFCCCFM*GHWQVL
Trigger: CAGCACCTGCCAGTGTCCGCACATAAAACAGCAACA...AAACATCTGGTTTACATAGCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp AAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCCTGTCGCTGCATCTTTaGGATTTCTCTCTGAAGTGG +
Preference number: 4 (lower is better)
Translates to: KQCHVKTFLYPQDPEVSVLSLHL*DFSLKW
Trigger: CCACTTCAGAGAGAAATCCCAAAGATGCAGCGACAG...GACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR GCA 90 bp AGCTATGCTGTTGAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGCACAATCCTCCTTTCTaGTGTCCCTACCGAGAGACT +
Preference number: 4 (lower is better)
Translates to: SYAVEVETTNELMSTALMHNPPF*CPYRET
Trigger: AGTCTCTCGGTAGGGACAGCAGAAAGGAGGATTGTG...CATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTCAACAGCATAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGTCCTCCAGCTCTCTCTaGATACTCTCTATCACAGCC +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPESSSSL*ILSITA
Trigger: GGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGA...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp AAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCTAAGTTGCCCTCCTTaGGCTCGTAATCATTTTCTT +
Preference number: 4 (lower is better)
Translates to: KTFLYPQDPEVSVCLSVSLSCPP*ARNHFL
Trigger: AAGAAAATGATTACGAGCCCAAGGAGGGCAACTTAG...AGAGACAGACAGACAGACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031601.8
CDS-3UTR TCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGGTACTGGAAGTGCTTaGAGCGCTGGTAAAAAGTCT +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPEGTGSA*SAGKKS
Trigger: AGACTTTTTACCAGCGCTTCAAGCACTTCCAGTACC...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp AAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGGTGTCTGTCGTGCTGAATGAAGTTTaGGGCTTGGAGGAAAAACTT +
Preference number: 4 (lower is better)
Translates to: KQCHVKTFLYPQDPEVSVVLNEV*GLEEKL
Trigger: AAGTTTTTCCTCCAAGCCTCAAACTTCATTCAGCAC...GACAGACACCTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGACTCTTTGTTATTGGATCCTCCGGTGCTaGATGAAGTTTGAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: EVETTNELMSTALMTLCYWILRC*MKFEAW
Trigger: CCAAGCCTCAAACTTCATTCAGCACCGGAGGATCCA...ATAACAAAGAGTCATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR TCA 90 bp GCTTCAAATAAACAATGCCATGTCAAGACTTTCCTTTATCCACAGGACCCAGAGTTCCAGGTCTGCTTCTaGAAGTCCTGGAATTTGCTT +
Preference number: 4 (lower is better)
Translates to: ASNKQCHVKTFLYPQDPEFQVCF*KSWNLL
Trigger: AAGCAAATTCCAGGACTTTCAGAAGCAGACCTGGAA...CTCTGGGTCCTGTGGATAAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CCA 90 bp GAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGACTCTTTGTTATCTGTCGCTGCATCTTTaGGATTTCTCTCTGAAGTGG +
Preference number: 4 (lower is better)
Translates to: EVETTNELMSTALMTLCYLSLHL*DFSLKW
Trigger: CCACTTCAGAGAGAAATCCCAAAGATGCAGCGACAG...ATAACAAAGAGTCATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 90 bp GTGACTCTCGCTCGGGCTGGGCCTCCACAGGTAGACACTGGTGACTaGAGGACTCCTGCGTGGCTCCGGGTGGTACCATCTTCTGAGGAA +
Preference number: 5 (lower is better)
Translates to: VTLARAGPPQVDTGD*RTPAWLRVVPSSEE
Trigger: TTCCTCAGAAGATGGTACCACCCGGAGCCACGCAGGAGTCCTTCAGTCACCAGTGTCTACCTGTGGAGGCCCAGCCCGAGCGAGAGTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS TCA 90 bp GCTGACGTACTGGAAAAAGATCTCACCACACTCGTGACACTGGTGTaGCTTGTCTCTAGAGTGGAGTCGGAGGTGCCCGGCGAGATGCGA +
Preference number: 5 (lower is better)
Translates to: ADVLEKDLTTLVTLV*LVSRVESEVPGEMR
Trigger: TCGCATCTCGCCGGGCACCTCCGACTCCACTCTAGAGACAAGTCACACCAGTGTCACGAGTGTGGTGAGATCTTTTTCCAGTACGTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 90 bp ACCAACTTCTGGGGCCCATCTGAGAGGAGTGAATCTGTCAGCTCCTaGCTGTCCTTCAGGGGAACGGAAGAAACCTGGAGAACAGGAAGG +
Preference number: 5 (lower is better)
Translates to: TNFWGPSERSESVSS*LSFRGTEETWRTGR
Trigger: CCTTCCTGTTCTCCAGGTTTCTTCCGTTCCCCTGAAGGACAGCCAGGAGCTGACAGATTCACTCCTCTCAGATGGGCCCCAGAAGTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085671.10
ENSMUST00000161881.2
ENSMUST00000161896.2
CDS TCA 90 bp ATGACAACCCCCTGCTGTCCATCCTGGTGTTCACAGCCCTCACTGTaGCCTTCAGCCTGGCAAGCATTCCTTTGGACTTCTCCCGATAGT +
Preference number: 5 (lower is better)
Translates to: MTTPCCPSWCSQPSL*PSAWQAFLWTSPDS
Trigger: ACTATCGGGAGAAGTCCAAAGGAATGCTTGCCAGGCTGAAGGTCACAGTGAGGGCTGTGAACACCAGGATGGACAGCAGGGGGTTGTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 90 bp TGGCTCCGGGTGGTACCATCTTCTGAGGAAGTACTTCGGGACTTGTaGCAATCTGTTGTCTGCGCTCCTCCAGCTCTCTCTGGATACTCT +
Preference number: 5 (lower is better)
Translates to: WLRVVPSSEEVLRDL*QSVVCAPPALSGYS
Trigger: AGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACCCGGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTATGAGAAGGTCTGCTaGCTCTTGCGAAGTCTCAGC +
Preference number: 5 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMYEKVC*LLRSLS
Trigger: GCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATA...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp GGACCCAGAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGGAAGTACTTCGGGACTaGTGGCAATCTGTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: GPRGVCLSVCLSPRGLTMEVLRD*WQSVVC
Trigger: GCAGACAACAGATTGCCACAAGTCCCGAAGTACTTC...CATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTCTGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAAGTGAGGTGGACACGTaGGTTGTAGCTCTTCCCACA +
Preference number: 5 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGSEVDT*VVALPT
Trigger: TGTGGGAAGAGCTACAACCAACGTGTCCACCTCACT...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp GAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGTGCACACTCTGGTGTaGAACGAGGTGGGACCTCAC +
Preference number: 5 (lower is better)
Translates to: EVSVCLSVSHPGVSLCRSVHTLV*NEVGPH
Trigger: GTGAGGTCCCACCTCGTTCAACACCAGAGTGTGCAC...AGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 90 bp TGTTCAAGGAGGCTGACGTACTGGAAAAAGATCTCACCACACTCGTaGCACTGGTGTGACTTGTCTCTAGAGTGGAGTCGGAGGTGCCCG +
Preference number: 5 (lower is better)
Translates to: CSRRLTYWKKISPHS*HWCDLSLEWSRRCP
Trigger: CGGGCACCTCCGACTCCACTCTAGAGACAAGTCACACCAGTGTCACGAGTGTGGTGAGATCTTTTTCCAGTACGTCAGCCTCCTTGAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 90 bp AGTCGCACTGGTAAGGCTGCTCCTGTAACTCCAGCTTCTTATCTTTaGTCACCGTCAGGTTCCAGCTGTAGGCCTCCTCGCAGATACCGT +
Preference number: 5 (lower is better)
Translates to: SRTGKAAPVTPASYL*SPSGSSCRPPRRYR
Trigger: ACGGTATCTGCGAGGAGGCCTACAGCTGGAACCTGACGGTGATCAAAGATAAGAAGCTGGAGTTACAGGAGCAGCCTTACCAGTGCGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 90 bp CCATCTTCTGAGGAAGTACTTCGGGACTTGTGGCAATCTGTTGTCTaGGCTCCTCCAGCTCTCTCTGGATACTCTCTATCACAGCCACGG +
Preference number: 5 (lower is better)
Translates to: PSSEEVLRDLWQSVV*APPALSGYSLSQPR
Trigger: CCGTGGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 90 bp TGGCTCCGGGTGGTACCATCTTCTGAGGAAGTACTTCGGGACTTGTaGCAATCTAACAACCACAACTGTTGTCTGCGCTCCTCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: WLRVVPSSEEVLRDL*QSNNHNCCLRSSSS
Trigger: AGAGCTGGAGGAGCGCAGACAACAGTTGTGGTTGTTAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACCCGGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR CAA 90 bp CTGGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCTCTGTCGCTGCATCTTaGGGATTTCTCTCTGAAGTG +
Preference number: 5 (lower is better)
Translates to: LGQSCPEMYQDGLHAEEFSVAAS*GFLSEV
Trigger: CACTTCAGAGAGAAATCCCAAAGATGCAGCGACAGA...GAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp GGGGCAGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTCCAGCTTCTTATCTTaGATCACCGTCAGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: GAVVSRDVPRWASRGRVPSSFLS*ITVRFQ
Trigger: CTGGAACCTGACGGTGATCAAAGATAAGAAGCTGGA...AGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACTGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp TCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTTGCTGGCTACGCAGATGTTaGAAGAGGCTACAGCTCCAA +
Preference number: 5 (lower is better)
Translates to: SVSHPGVSLCRSGWPGTCWLRRC*KRLQLQ
Trigger: TTGGAGCTGTAGCCTCTTCAAACATCTGCGTAGCCA...GCAAGTTCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp CAGCTCCTGGCTGTCCTTCAGGGGAACGGAAGAAACCTGGAGAACAGGAAGGGCGTATGGACTGGTCTATaGACAAGGCCATTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: QLLAVLQGNGRNLENRKGVWTGL*TRPFSS
Trigger: GGAAGAAAATGGCCTTGTCAATAGACCAGTCCATAC...GCCCTTCCTGTTCTCCAGGTTTCTTCCGTTCCCCTGAAGGACAGCCAGGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8
CDS TCA 90 bp ATTGGTGTGGCCTCTCTCCTGGAGACGACTTCTTGTGGACATAGCTaGACTCATTGCAGTCTGTCCTCTTTGAAGAGGACTGCCCTAGGG +
Preference number: 5 (lower is better)
Translates to: IGVASLLETTSCGHS*THCSLSSLKRTALG
Trigger: CCCTAGGGCAGTCCTCTTCAAAGAGGACAGACTGCAATGAGTTCAGCTATGTCCACAAGAAGTCGTCTCCAGGAGAGAGGCCACACCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp ATCCTCCTTTCTGCTGTCCCTACCGAGAGACTTCTGGGACTGGTCCAAATGTGCTATGAGAAGGTCTGCTaGCTCTTGCGAAGTCTCAGC +
Preference number: 5 (lower is better)
Translates to: ILLSAVPTERLLGLVQMCYEKVC*LLRSLS
Trigger: GCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATA...GCACATTTGGACCAGTCCCAGAAGTCTCTCGGTAGGGACAGCAGAAAGGAGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS-3UTR CAA 90 bp TGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTGGCTGGCCTGGATCTGTCGCTGCATCTTaGGGATTTCTCTCTGAAGTG +
Preference number: 5 (lower is better)
Translates to: CLSVSHPGVSLCRSGWPGSVAAS*GFLSEV
Trigger: CACTTCAGAGAGAAATCCCAAAGATGCAGCGACAGA...TCCAGGCCAGCCAGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 90 bp TGTATCCCTGCATCCAGGAGCAGTCCTCTTCTTCTACTTTCACTATaGGAAGGTCTGCTTGCTCTTGCGAAGTCTCAGCGGGAGGCTCTA +
Preference number: 5 (lower is better)
Translates to: CIPASRSSPLLLLSL*EGLLALAKSQREAL
Trigger: TAGAGCCTCCCGCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAGAAGAGGACTGCTCCTGGATGCAGGGATACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS GCA 90 bp AAGTACTTCGGGACTTGTGGCAATCTAACAACCACAACTGTTGTCTaGGCTCCTCCAGCTCTCTCTGGATACTCTCTATCACAGCCACGG +
Preference number: 5 (lower is better)
Translates to: KYFGTCGNLTTTTVV*APPALSGYSLSQPR
Trigger: CCGTGGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGTTGTGGTTGTTAGATTGCCACAAGTCCCGAAGTACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS CCA 90 bp ATGGTACTGGAAGTGCTTGAAGCGCTGGTAAAAAGTCTCAAGCACTaGCCGGTTGTATCCCTGCATCCAGGAGCAGTCCTCTTCTTCTAC +
Preference number: 5 (lower is better)
Translates to: MVLEVLEALVKSLKH*PVVSLHPGAVLFFY
Trigger: GTAGAAGAAGAGGACTGCTCCTGGATGCAGGGATACAACCGGCCAGTGCTTGAGACTTTTTACCAGCGCTTCAAGCACTTCCAGTACCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS CCA 90 bp AAGTTTGAGGCTTGGAGGAAAAACTTCCCGCAGTCACCACATCTGTaGCCTCGTTCGCCATTCGATTTCTGCTTCCGGTTAACATCCGGA +
Preference number: 5 (lower is better)
Translates to: KFEAWRKNFPQSPHL*PRSPFDFCFRLTSG
Trigger: TCCGGATGTTAACCGGAAGCAGAAATCGAATGGCGAACGAGGCCACAGATGTGGTGACTGCGGGAAGTTTTTCCTCCAAGCCTCAAACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGATATGAGAAGGTCTGCTaGCTCTTGCGAAGTCTCAGC +
Preference number: 5 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGYEKVC*LLRSLS
Trigger: GCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATA...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp AGTCGTGTCCAGAGATGTACCAAGATGGGCTTCACGCGGAAGAGTTCCTTTGGAGAAGTACTTCGGGACTaGTGGCAATCTGTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: SRVQRCTKMGFTRKSSFGEVLRD*WQSVVC
Trigger: GCAGACAACAGATTGCCACAAGTCCCGAAGTACTTC...TCCAAAGGAACTCTTCCGCGTGAAGCCCATCTTGGTACATCTCTGGACACGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 90 bp CAGGAGCAGTCCTCTTCTTCTACTTTCACTATGAGAAGGTCTGCTTaGTCTTGCGAAGTCTCAGCGGGAGGCTCTAAGTGTATAACTGCC +
Preference number: 5 (lower is better)
Translates to: QEQSSSSTFTMRRSA*SCEVSAGGSKCITA
Trigger: GGCAGTTATACACTTAGAGCCTCCCGCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAGAAGAGGACTGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS-3UTR CAA 90 bp GAGGTGTCTGTCTGTCTGTCTGTCTCTCACCCAGGGGTCTCACTATGTAGATCTTCCAGCTTCTTATCTTaGATCACCGTCAGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: EVSVCLSVSHPGVSLCRSSSFLS*ITVRFQ
Trigger: CTGGAACCTGACGGTGATCAAAGATAAGAAGCTGGA...AGATCTACATAGTGAGACCCCTGGGTGAGAGACAGACAGACAGACAGACACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 90 bp CAGTCCTCTTCTTCTACTTTCACTATGAGAAGGTCTGCTTGCTCTTaGGAAGTCTCAGCGGGAGGCTCTAAGTGTATAACTGCCCTGGAT +
Preference number: 5 (lower is better)
Translates to: QSSSSTFTMRRSACS*EVSAGGSKCITALD
Trigger: ATCCAGGGCAGTTATACACTTAGAGCCTCCCGCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAGAAGAGGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS-3UTR CAA 90 bp AGCTATGCTGTTGAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGAGTGAGGTGGACACGTaGGTTGTAGCTCTTCCCACA +
Preference number: 5 (lower is better)
Translates to: SYAVEVETTNELMSTALMSEVDT*VVALPT
Trigger: TGTGGGAAGAGCTACAACCAACGTGTCCACCTCACT...CATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTCAACAGCATAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp GAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGACTCTTTGTTATGTGCACACTCTGGTGTaGAACGAGGTGGGACCTCAC +
Preference number: 5 (lower is better)
Translates to: EVETTNELMSTALMTLCYVHTLV*NEVGPH
Trigger: GTGAGGTCCCACCTCGTTCAACACCAGAGTGTGCAC...ATAACAAAGAGTCATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS-3UTR CAA 90 bp GAGGTGGAAACTACAAATGAGCTTATGTCTACTGCACTCATGACTCTTTGTTATTGGCTACGCAGATGTTaGAAGAGGCTACAGCTCCAA +
Preference number: 5 (lower is better)
Translates to: EVETTNELMSTALMTLCYWLRRC*KRLQLQ
Trigger: TTGGAGCTGTAGCCTCTTCAAACATCTGCGTAGCCA...ATAACAAAGAGTCATGAGTGCAGTAGACATAAGCTCATTTGTAGTTTCCACCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 90 bp ACTTCTCCCGATAGTTCCAGGTCTGCTTCTGAAAGTCCTGGAATTTaGTTAATGTTTAGTTTAGTGTTCTTACTTCTTCTGTCGCTGCAT +
Preference number: 5 (lower is better)
Translates to: TSPDSSRSASESPGI*LMFSLVFLLLLSLH
Trigger: ATGCAGCGACAGAAGAAGTAAGAACACTAAACTAAACATTAAGCAAATTCCAGGACTTTCAGAAGCAGACCTGGAACTATCGGGAGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 72 bp GCTCGGGCTGGGCCTCCACAGGTAGACACTGGTGACTaGAGGACTCCTGCGTGGCTCCGGGTGGTACCATCT +
Preference number: 6 (lower is better)
Translates to: ARAGPPQVDTGD*RTPAWLRVVPS
Trigger: AGATGGTACCACCCGGAGCCACGCAGGAGTCCTTCAGTCACCAGTGTCTACCTGTGGAGGCCCAGCCCGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
ENSMUST00000162168.8
CDS GCA 72 bp CACTGGTGTGACTTGTCTCTAGAGTGGAGTCGGAGGTaGCCGGCGAGATGCGAACGCCTCCCGAAGCCCTTC +
Preference number: 6 (lower is better)
Translates to: HWCDLSLEWSRR*PARCERLPKPF
Trigger: GAAGGGCTTCGGGAGGCGTTCGCATCTCGCCGGGCACCTCCGACTCCACTCTAGAGACAAGTCACACCAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 72 bp CGCGGGGTCCTGCTGCCTCATGGTACTGGAAGTGCTTaGAGCGCTGGTAAAAAGTCTCAAGCACTGGCCGGT +
Preference number: 6 (lower is better)
Translates to: RGVLLPHGTGSA*SAGKKSQALAG
Trigger: ACCGGCCAGTGCTTGAGACTTTTTACCAGCGCTTCAAGCACTTCCAGTACCATGAGGCAGCAGGACCCCGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS CAA 90 bp GCGTGGCTCCGGGTGGTACCATCTTCTGAGGAAGTACTTCGGGACTaGTGGCAATCTGTTGTCTGCGCTCCTCCAGCTCTCTCTGGATAC +
Preference number: 6 (lower is better)
Translates to: AWLRVVPSSEEVLRD*WQSVVCAPPALSGY
Trigger: GTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACCCGGAGCCACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CAA 90 bp GCGTGGCTCCGGGTGGTACCATCTTCTGAGGAAGTACTTCGGGACTaGTGGCAATCTAACAACCACAACTGTTGTCTGCGCTCCTCCAGC +
Preference number: 6 (lower is better)
Translates to: AWLRVVPSSEEVLRD*WQSNNHNCCLRSSS
Trigger: GCTGGAGGAGCGCAGACAACAGTTGTGGTTGTTAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACCCGGAGCCACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS TCA 72 bp CCCTGCTGTCCATCCTGGTGTTCACAGCCCTCACTGTaGCCTTCAGCCTGGCAAGCATTCCTTTGGACTTCT +
Preference number: 6 (lower is better)
Translates to: PCCPSWCSQPSL*PSAWQAFLWTS
Trigger: AGAAGTCCAAAGGAATGCTTGCCAGGCTGAAGGTCACAGTGAGGGCTGTGAACACCAGGATGGACAGCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 72 bp TTTTATGTGCGGACACTGGCAGGTGCTGTCCCTGCATaGGTCGCATTTCTGGGGTTTCTCCGCAGAGTGAGT +
Preference number: 6 (lower is better)
Translates to: FYVRTLAGAVPA*VAFLGFLRRVS
Trigger: ACTCACTCTGCGGAGAAACCCCAGAAATGCGACGCATGCAGGGACAGCACCTGCCAGTGTCCGCACATAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 72 bp GTGGCAATCTGTTGTCTGCGCTCCTCCAGCTCTCTCTaGATACTCTCTATCACAGCCACGGCTTCTTCCCCA +
Preference number: 6 (lower is better)
Translates to: VAICCLRSSSSL*ILSITATASSP
Trigger: TGGGGAAGAAGCCGTGGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 72 bp TCGCAGATACCGTTCTTCTCGCTCTTCTGGCCCACATaGAGCACTTGGTGTTCAAGGAGGCTGACGTACTGG +
Preference number: 6 (lower is better)
Translates to: SQIPFFSLFWPT*STWCSRRLTYW
Trigger: CCAGTACGTCAGCCTCCTTGAACACCAAGTGCTCCATGTGGGCCAGAAGAGCGAGAAGAACGGTATCTGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 72 bp GGGCAGCTTTTCTGTTGCTGTTTTATGTGCGGACACTaGCAGGTGCTGTCCCTGCATGCGTCGCATTTCTGG +
Preference number: 6 (lower is better)
Translates to: GQLFCCCFMCGH*QVLSLHASHFW
Trigger: CCAGAAATGCGACGCATGCAGGGACAGCACCTGCCAGTGTCCGCACATAAAACAGCAACAGAAAAGCTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 72 bp AAGGACTCCTGCGTGGCTCCGGGTGGTACCATCTTCTaGGGAAGTACTTCGGGACTTGTGGCAATCTGTTGT +
Preference number: 6 (lower is better)
Translates to: KDSCVAPGGTIF*GSTSGLVAICC
Trigger: ACAACAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACCCGGAGCCACGCAGGAGTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 72 bp GGTAAGGCTGCTCCTGTAACTCCAGCTTCTTATCTTTaGTCACCGTCAGGTTCCAGCTGTAGGCCTCCTCGC +
Preference number: 6 (lower is better)
Translates to: GKAAPVTPASYL*SPSGSSCRPPR
Trigger: GCGAGGAGGCCTACAGCTGGAACCTGACGGTGATCAAAGATAAGAAGCTGGAGTTACAGGAGCAGCCTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 72 bp GAAGTGCTTGAAGCGCTGGTAAAAAGTCTCAAGCACTaGCCGGTTGTATCCCTGCATCCAGGAGCAGTCCTC +
Preference number: 6 (lower is better)
Translates to: EVLEALVKSLKH*PVVSLHPGAVL
Trigger: GAGGACTGCTCCTGGATGCAGGGATACAACCGGCCAGTGCTTGAGACTTTTTACCAGCGCTTCAAGCACTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS CCA 72 bp AACCACAACTGTTGTCTGCGCTCCTCCAGCTCTCTCTaGATACTCTCTATCACAGCCACGGCTTCTTCCCCA +
Preference number: 6 (lower is better)
Translates to: NHNCCLRSSSSL*ILSITATASSP
Trigger: TGGGGAAGAAGCCGTGGCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGTTGTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS TCA 72 bp TCCTCTTTGAAGAGGACTGCCCTAGGGTTTCTTTCATaGCAACCCCCTGCTGTCCATCCTGGTGTTCACAGC +
Preference number: 6 (lower is better)
Translates to: SSLKRTALGFLS*QPPAVHPGVHS
Trigger: GCTGTGAACACCAGGATGGACAGCAGGGGGTTGTCATGAAAGAAACCCTAGGGCAGTCCTCTTCAAAGAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 72 bp CATCTTTGGGATTTCTCTCTGAAGTGGCGCTTCAGATaGTCGATCAGATGCGAGTGCCGCCCAAAGCTCTTC +
Preference number: 6 (lower is better)
Translates to: HLWDFSLKWRFR*SIRCECRPKLF
Trigger: GAAGAGCTTTGGGCGGCACTCGCATCTGATCGAGCATCTGAAGCGCCACTTCAGAGAGAAATCCCAAAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 72 bp GCTTGGAGGAAAAACTTCCCGCAGTCACCACATCTGTaGCCTCGTTCGCCATTCGATTTCTGCTTCCGGTTA +
Preference number: 6 (lower is better)
Translates to: AWRKNFPQSPHL*PRSPFDFCFRL
Trigger: TAACCGGAAGCAGAAATCGAATGGCGAACGAGGCCACAGATGTGGTGACTGCGGGAAGTTTTTCCTCCAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CCA 72 bp CCGTTCTTCTCGCTCTTCTGGCCCACATGGAGCACTTaGTGTTCAAGGAGGCTGACGTACTGGAAAAAGATC +
Preference number: 6 (lower is better)
Translates to: PFFSLFWPTWST*CSRRLTYWKKI
Trigger: GATCTTTTTCCAGTACGTCAGCCTCCTTGAACACCAAGTGCTCCATGTGGGCCAGAAGAGCGAGAAGAACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CAA 72 bp CTTCTGAGGAAGTACTTCGGGACTTGTGGCAATCTGTaGTCTGCGCTCCTCCAGCTCTCTCTGGATACTCTC +
Preference number: 6 (lower is better)
Translates to: LLRKYFGTCGNL*SALLQLSLDTL
Trigger: GAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CAA 90 bp TGGTACCATCTTCTGAGGAAGTACTTCGGGACTTGTGGCAATCTGTaGTCTGCGCTCCTCCAGCTCTCTCTGGATACTCTCTATCACAGC +
Preference number: 6 (lower is better)
Translates to: WYHLLRKYFGTCGNL*SALLQLSLDTLYHS
Trigger: GCTGTGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS TCA 72 bp GCATCCAGGAGCAGTCCTCTTCTTCTACTTTCACTATaGGAAGGTCTGCTTGCTCTTGCGAAGTCTCAGCGG +
Preference number: 6 (lower is better)
Translates to: ASRSSPLLLLSL*EGLLALAKSQR
Trigger: CCGCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAGAAGAGGACTGCTCCTGGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS TCA 72 bp AGGCTGACGTACTGGAAAAAGATCTCACCACACTCGTaGCACTGGTGTGACTTGTCTCTAGAGTGGAGTCGG +
Preference number: 6 (lower is better)
Translates to: RLTYWKKISPHS*HWCDLSLEWSR
Trigger: CCGACTCCACTCTAGAGACAAGTCACACCAGTGTCACGAGTGTGGTGAGATCTTTTTCCAGTACGTCAGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 72 bp GAGGAAGTACTTCGGGACTTGTGGCAATCTGTTGTCTaGGCTCCTCCAGCTCTCTCTGGATACTCTCTATCA +
Preference number: 6 (lower is better)
Translates to: EEVLRDLWQSVV*APPALSGYSLS
Trigger: TGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGATTGCCACAAGTCCCGAAGTACTTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CAA 72 bp ACCGTTCTTCTCGCTCTTCTGGCCCACATGGAGCACTaGGTGTTCAAGGAGGCTGACGTACTGGAAAAAGAT +
Preference number: 6 (lower is better)
Translates to: TVLLALLAHMEH*VFKEADVLEKD
Trigger: ATCTTTTTCCAGTACGTCAGCCTCCTTGAACACCAAGTGCTCCATGTGGGCCAGAAGAGCGAGAAGAACGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS CAA 72 bp CGGGTGGTACCATCTTCTGAGGAAGTACTTCGGGACTaGTGGCAATCTAACAACCACAACTGTTGTCTGCGC +
Preference number: 6 (lower is better)
Translates to: RVVPSSEEVLRD*WQSNNHNCCLR
Trigger: GCGCAGACAACAGTTGTGGTTGTTAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCACCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS TCA 72 bp GCCTCTCTCCTGGAGACGACTTCTTGTGGACATAGCTaGACTCATTGCAGTCTGTCCTCTTTGAAGAGGACT +
Preference number: 6 (lower is better)
Translates to: ASLLETTSCGHS*THCSLSSLKRT
Trigger: AGTCCTCTTCAAAGAGGACAGACTGCAATGAGTTCAGCTATGTCCACAAGAAGTCGTCTCCAGGAGAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 72 bp CTGAACTCATTGCAGTCTGTCCTCTTTGAAGAGGACTaGCCTAGGGTTTCTTTCATGACAACCCCCTGCTGT +
Preference number: 6 (lower is better)
Translates to: LNSLQSVLFEED*PRVSFMTTPCC
Trigger: ACAGCAGGGGGTTGTCATGAAAGAAACCCTAGGGCAGTCCTCTTCAAAGAGGACAGACTGCAATGAGTTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 72 bp GGGACTTGTGGCAATCTAACAACCACAACTGTTGTCTaGGCTCCTCCAGCTCTCTCTGGATACTCTCTATCA +
Preference number: 6 (lower is better)
Translates to: GTCGNLTTTTVV*APPALSGYSLS
Trigger: TGATAGAGAGTATCCAGAGAGAGCTGGAGGAGCGCAGACAACAGTTGTGGTTGTTAGATTGCCACAAGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS CCA 72 bp GTGGTACCATCTTCTGAGGAAGTACTTCGGGACTTGTaGCAATCTAACAACCACAACTGTTGTCTGCGCTCC +
Preference number: 6 (lower is better)
Translates to: VVPSSEEVLRDL*QSNNHNCCLRS
Trigger: GGAGCGCAGACAACAGTTGTGGTTGTTAGATTGCCACAAGTCCCGAAGTACTTCCTCAGAAGATGGTACCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161896.2
CDS TCA 72 bp TACTTCTTCTGTCGCTGCATCTTTGGGATTTCTCTCTaGAGTGGCGCTTCAGATGCTCGATCAGATGCGAGT +
Preference number: 6 (lower is better)
Translates to: YFFCRCIFGISL*SGASDARSDAS
Trigger: ACTCGCATCTGATCGAGCATCTGAAGCGCCACTTCAGAGAGAAATCCCAAAGATGCAGCGACAGAAGAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
CDS GCA 72 bp TCCTCTTCTTCTACTTTCACTATGAGAAGGTCTGCTTaGTCTTGCGAAGTCTCAGCGGGAGGCTCTAAGTGT +
Preference number: 6 (lower is better)
Translates to: SSSSTFTMRRSA*SCEVSAGGSKC
Trigger: ACACTTAGAGCCTCCCGCTGAGACTTCGCAAGAGCAAGCAGACCTTCTCATAGTGAAAGTAGAAGAAGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031601.8
ENSMUST00000085671.10
ENSMUST00000161896.2
CDS CCA 72 bp TCACAGGTATGTGCCACTGTACCCTGCAGTATGGACTaGTCTATTGACAAGGCCATTTTCTTCCAGAAGATT +
Preference number: 6 (lower is better)
Translates to: SQVCATVPCSMD*SIDKAIFFQKI
Trigger: AATCTTCTGGAAGAAAATGGCCTTGTCAATAGACCAGTCCATACTGCAGGGTACAGTGGCACATACCTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162168.8