Pregenerated sensors for ZKSCAN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054931Ensembl transcript IDs: ENSMUST00000062609.6, ENSMUST00000225845.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGGACACTCCAAAATCCGGAACCATCCATTCAGGAGAAAACTGCTaGCTACGAGTGACGGTTCTGGAAGTCCTTGTAAATCCAAATGGT | + |
|
Preference number: 1 (lower is better) Translates to: RDTPKSGTIHSGENC*LRVTVLEVLVNPNG Trigger: ACCATTTGGATTTACAAGGACTTCCAGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGTGTCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR GCA 90 bp | AGAAGGGACACTCCAAAATCCGGAACCATCCATTCAGGAGAAAACTaGTGGCTACGAGTGACGGTTCTGGAAGTCCTTGTAAATCCAAAT | + |
|
Preference number: 1 (lower is better) Translates to: RRDTPKSGTIHSGEN*WLRVTVLEVLVNPN Trigger: ATTTGGATTTACAAGGACTTCCAGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGTGTCCCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR-3UTR CCA 90 bp | GAAGAACATTTCATCAGTCCCTGGAGTAAAGGTTTTCTAGCACCCATGCACAAGGTGTCTTCCGCTCACTaGCAAGTGCTCACCAACCCC | + |
|
Preference number: 2 (lower is better) Translates to: EEHFISPWSKGFLAPMHKVSSAH*QVLTNP Trigger: GGGGTTGGTGAGCACTTGCCAGTGAGCGGAAGACAC...CTTGTGCATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR-3UTR CCA 90 bp | AGTGTTGAAGAACATTTCATCAGTCCCTGGAGTAAAGGTTTTCTAGCACCCATGCTGGACAGTGTGTATTaGCCACACCCTCTCTTCTGC | + |
|
Preference number: 2 (lower is better) Translates to: SVEEHFISPWSKGFLAPMLDSVY*PHPLFC Trigger: GCAGAAGAGAGGGTGTGGCCAATACACACTGTCCAG...CATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTCAACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR CAA 90 bp | GATTATCCACCTCAAACTATAACATCTAATTCTGGACAGTGTGTATaGGCCACACCCTCTCTTCTGCAGTTAGTAAGGGCTCCAGGTGTC | + |
|
Preference number: 2 (lower is better) Translates to: DYPPQTITSNSGQCV*ATPSLLQLVRAPGV Trigger: GACACCTGGAGCCCTTACTAACTGCAGAAGAGAGGGTGTGGCCAATACACACTGTCCAGAATTAGATGTTATAGTTTGAGGTGGATAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR-3UTR TCA 90 bp | CACAAATGGTCCTCGTTAGAACTTCTTCAGAAAGCTAGACCCAGATTTTCAGTGAAGACCGCAGGAATCTaGCTAGACATAAAAGATTCC | + |
|
Preference number: 2 (lower is better) Translates to: HKWSSLELLQKARPRFSVKTAGI*LDIKDS Trigger: GGAATCTTTTATGTCTAGTCAGATTCCTGCGGTCTT...CACTGAAAATCTGGGTCTAGCTTTCTGAAGAAGTTCTAACGAGGACCATTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR GCA 72 bp | ACTCCAAAATCCGGAACCATCCATTCAGGAGAAAACTaGTGGCTACGAGTGACGGTTCTGGAAGTCCTTGTA | + |
|
Preference number: 3 (lower is better) Translates to: TPKSGTIHSGEN*WLRVTVLEVLV Trigger: TACAAGGACTTCCAGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR CCA 72 bp | CCAAAATCCGGAACCATCCATTCAGGAGAAAACTGCTaGCTACGAGTGACGGTTCTGGAAGTCCTTGTAAAT | + |
|
Preference number: 3 (lower is better) Translates to: PKSGTIHSGENC*LRVTVLEVLVN Trigger: ATTTACAAGGACTTCCAGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR GCA 72 bp | TTTAGGACAGGAATGTCTCCCTACATCTTCAGAAGTTaGTGGAGGCATTCTTCATCATATTCTCTATCCGCA | + |
|
Preference number: 3 (lower is better) Translates to: FRTGMSPYIFRS*WRHSSSYSLSA Trigger: TGCGGATAGAGAATATGATGAAGAATGCCTCCAGCAACTTCTGAAGATGTAGGGAGACATTCCTGTCCTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR-3UTR CAA 90 bp | TGTCTCCCTACATCTTCAGAAGTTGCTGGAGGCATTCTTCATCATATTCTCTATCCCAGATTTTCAGTGTaGAAGAACATTTCATCAGTC | + |
|
Preference number: 3 (lower is better) Translates to: CLPTSSEVAGGILHHILYPRFSV*KNISSV Trigger: GACTGATGAAATGTTCTTCAACACTGAAAATCTGGG...ATAGAGAATATGATGAAGAATGCCTCCAGCAACTTCTGAAGATGTAGGGAGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR TCA 90 bp | GACACTCCAAAATCCGGAACCATCCATTCAGGAGAAAACTGCTGGCTACGAGTGCCTGCCACCGGACTCTaGCCTTCCCAGGCCTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DTPKSGTIHSGENCWLRVPATGL*PSQASP Trigger: TGGAGAGGCCTGGGAAGGTCAGAGTCCGGTGGCAGG...CACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR GCA 90 bp | AAAATCCGGAACCATCCATTCAGGAGAAAACTGCTGGCTACGAGTGACGGTTCTTCCCAGGCCTCTCCATaGAGAGGCTTTGGAGCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: KIRNHPFRRKLLATSDGSSQASP*RGFGAV Trigger: AACTGCTCCAAAGCCTCTGCATGGAGAGGCCTGGGA...AGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR TCA 90 bp | GACACTCCAAAATCCGGAACCATCCATTCAGGAGAAAACTGCTGGCTACGAGTGGTCAAGCCTGAACTCTaGGCAAAGCTCTTCCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: DTPKSGTIHSGENCWLRVVKPEL*AKLFPH Trigger: ATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCTTGAC...CACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CCA 90 bp | CTGACTAGACATAAAAGATTCCGATTGACAAAGAGTAAAGAAGGGACACTCCAAGACTGCCCAGCCAACTaGTCTCCTCTGCCAAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LTRHKRFRLTKSKEGTLQDCPAN*SPLPRG Trigger: CCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTC...TTGGAGTGTCCCTTCTTTACTCTTTGTCAATCGGAATCTTTTATGTCTAGTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CCA 90 bp | CACAAATGGTCCTCGTTAGAACTTCTTCAGAAAGCTAGACCCAGATTTTCAGTGGCCGCCTGGTTCCTGTaGCACTCTTCTGTGCTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: HKWSSLELLQKARPRFSVAAWFL*HSSVLS Trigger: AGACAGCACAGAAGAGTGCCACAGGAACCAGGCGGC...CACTGAAAATCTGGGTCTAGCTTTCTGAAGAAGTTCTAACGAGGACCATTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR TCA 90 bp | AGTGTTGAAGAACATTTCATCAGTCCCTGGAGTAAAGGTTTTCTAGCACCCATGGCAGTGGCTACTTTGTaGGTCCTGGGATGGTGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: SVEEHFISPWSKGFLAPMAVATL*VLGWCH Trigger: GTGACACCATCCCAGGACTCACAAAGTAGCCACTGC...CATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTCAACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR GCA 90 bp | TGTCTCCCTACATCTTCAGAAGTTGCTGGAGGCATTCTTCATCATATTCTCTATCCACTAGAAGCCCAGTaGCCTCTTCTGCAGACCGAG | + |
|
Preference number: 4 (lower is better) Translates to: CLPTSSEVAGGILHHILYPLEAQ*PLLQTE Trigger: CTCGGTCTGCAGAAGAGGGCACTGGGCTTCTAGTGG...ATAGAGAATATGATGAAGAATGCCTCCAGCAACTTCTGAAGATGTAGGGAGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR GCA 90 bp | AAAATCCGGAACCATCCATTCAGGAGAAAACTGCTGGCTACGAGTGACGGTTCTTTCTCTCACACTCACTaGACTGGTAAGTCTCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KIRNHPFRRKLLATSDGSFSHTH*TGKSQE Trigger: CTCCTGAGACTTACCAGTGCAGTGAGTGTGAGAGAA...AGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CCA 90 bp | GAAGAACATTTCATCAGTCCCTGGAGTAAAGGTTTTCTAGCACCCATGCACAAGCTCGAGGCAAGTCCCTaGTCTCAGGCTTCATTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: EEHFISPWSKGFLAPMHKLEASP*SQASFP Trigger: TGGAAATGAAGCCTGAGACCAGGGACTTGCCTCGAG...CTTGTGCATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CCA 90 bp | GGACACTCCAAAATCCGGAACCATCCATTCAGGAGAAAACTGCTGGCTACGAGTGGATTCTCTTGTGTTTaGTCAAGCCTGAACTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: GHSKIRNHPFRRKLLATSGFSCV*SSLNSE Trigger: CTCAGAGTTCAGGCTTGACCAAACACAAGAGAATCC...ACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR TCA 90 bp | CACAAATGGTCCTCGTTAGAACTTCTTCAGAAAGCTAGACCCAGATTTTCAGTGGTGTTTGGTCAAGCCTaGACTCTGAGCAAAGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HKWSSLELLQKARPRFSVVFGQA*TLSKAL Trigger: AAGAGCTTTGCTCAGAGTTCAGGCTTGACCAAACAC...CACTGAAAATCTGGGTCTAGCTTTCTGAAGAAGTTCTAACGAGGACCATTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR TCA 90 bp | CTGACTAGACATAAAAGATTCCGATTGACAAAGAGTAAAGAAGGGACACTCCAAGGCTTCTCCTCCGAGTaGAACTTCTCTCACACTCAC | + |
|
Preference number: 4 (lower is better) Translates to: LTRHKRFRLTKSKEGTLQGFSSE*NFSHTH Trigger: GTGAGTGTGAGAGAAGTTTCACTCGGAGGAGAAGCC...TTGGAGTGTCCCTTCTTTACTCTTTGTCAATCGGAATCTTTTATGTCTAGTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR GCA 90 bp | TGTCTCCCTACATCTTCAGAAGTTGCTGGAGGCATTCTTCATCATATTCTCTATGTGCTGTCTGTAACTTaGCTTCCTGCTCACTGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: CLPTSSEVAGGILHHILYVLSVT*LPAHWL Trigger: AAGCCAGTGAGCAGGAAGGCAAGTTACAGACAGCAC...ATAGAGAATATGATGAAGAATGCCTCCAGCAACTTCTGAAGATGTAGGGAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CCA 90 bp | CACAAATGGTCCTCGTTAGAACTTCTTCAGAAAGCTAGACCCAGATTTTCAGTGAGTGACTTCATTGCCTaGCAGTGGCTACTTTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: HKWSSLELLQKARPRFSVSDFIA*QWLLCE Trigger: CTCACAAAGTAGCCACTGCCAGGCAATGAAGTCACT...CACTGAAAATCTGGGTCTAGCTTTCTGAAGAAGTTCTAACGAGGACCATTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CCA 90 bp | AGTGTTGAAGAACATTTCATCAGTCCCTGGAGTAAAGGTTTTCTAGCACCCATGGTCTGCTCAGGCTTTTaGTCCCTGTATTCTTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SVEEHFISPWSKGFLAPMVCSGF*SLYSSA Trigger: AGCTGAAGAATACAGGGACCAAAAGCCTGAGCAGAC...CATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTCAACACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| 3UTR CAA 72 bp | GAACTTCTTCAGAAAGCTAGACCCAGATTTTCAGTGTaGAAGAACATTTCATCAGTCCCTGGAGTAAAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: ELLQKARPRFSV*KNISSVPGVKV Trigger: AACCTTTACTCCAGGGACTGATGAAATGTTCTTCAACACTGAAAATCTGGGTCTAGCTTTCTGAAGAAGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS GCA 90 bp | AGCGGAAAGCACGGAAGCGCTGGCGGGAGCGGTCAGGCCCAGGACTaGCCAGCCAACTGGTCTCCTCTGCCAAGGGGGAGGCCTCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: SGKHGSAGGSGQAQD*PANWSPLPRGRPLP Trigger: AGGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS CCA 90 bp | GGAAGCGCTGGCGGGAGCGGTCAGGCCCAGGACTGCCCAGCCAACTaGTCTCCTCTGCCAAGGGGGAGGCCTCTTCCTGTTCCACTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: GSAGGSGQAQDCPAN*SPLPRGRPLPVPLS Trigger: TGAAAGTGGAACAGGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS GCA 90 bp | AGGGGGAGGCCTCTTCCTGTTCCACTTTCACCACTAGAAGCCCAGTaGCCTCTTCTGCAGACCGAGCGTTTAGGGCTGCGGACGTTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: RGRPLPVPLSPLEAQ*PLLQTERLGLRTFR Trigger: CCGGAACGTCCGCAGCCCTAAACGCTCGGTCTGCAGAAGAGGGCACTGGGCTTCTAGTGGTGAAAGTGGAACAGGAAGAGGCCTCCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS TCA 90 bp | CACTGCCACCTTGCAGCAGAGAAGTTCGCGACTCCATTCTCCCGTTaGAACCTGTGGAGGTGTGTCATCCAGCTGCCTGTCCAAGTACTC | + |
|
Preference number: 5 (lower is better) Translates to: HCHLAAEKFATPFSR*NLWRCVIQLPVQVL Trigger: GAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAGGTTTCAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS CCA 90 bp | CAGCTCGAGGCAAGTCCCTGGTCTCAGGCTTCATTTCCAGCCCTCTaGCCTGTAAGGGCGAACACTCCAAAGATTCCTGAGATTCGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: QLEASPWSQASFPAL*PVRANTPKIPEIRA Trigger: AGCACGAATCTCAGGAATCTTTGGAGTGTTCGCCCTTACAGGCCAGAGGGCTGGAAATGAAGCCTGAGACCAGGGACTTGCCTCGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS-3UTR CAA 90 bp | AAAATCCGGAACCATCCATTCAGGAGAAAACTGCTGGCTACGAGTGACGGTTCTTGTCTGCTCAGGCTTTaGGTCCCTGTATTCTTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: KIRNHPFRRKLLATSDGSCLLRL*VPVFFS Trigger: GCTGAAGAATACAGGGACCAAAAGCCTGAGCAGACA...AGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CAA 90 bp | GAAGAACATTTCATCAGTCCCTGGAGTAAAGGTTTTCTAGCACCCATGCACAAGGACTCCATTCTCCCGTaGAAACCTGTGGAGGTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: EEHFISPWSKGFLAPMHKDSILP*KPVEVC Trigger: ACACACCTCCACAGGTTTCAACGGGAGAATGGAGTC...CTTGTGCATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CAA 90 bp | CTGACTAGACATAAAAGATTCCGATTGACAAAGAGTAAAGAAGGGACACTCCAATGTGCTGTCTGTAACTaGCCTTCCTGCTCACTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: LTRHKRFRLTKSKEGTLQCAVCN*PSCSLA Trigger: AGCCAGTGAGCAGGAAGGCAAGTTACAGACAGCACA...TTGGAGTGTCCCTTCTTTACTCTTTGTCAATCGGAATCTTTTATGTCTAGTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS-3UTR CAA 90 bp | CTGACTAGACATAAAAGATTCCGATTGACAAAGAGTAAAGAAGGGACACTCCAACTCCATGCAGAGGCTTaGGAGCAGTTTTATCACCAT | + |
|
Preference number: 5 (lower is better) Translates to: LTRHKRFRLTKSKEGTLQLHAEA*EQFYHH Trigger: ATGGTGATAAAACTGCTCCAAAGCCTCTGCATGGAG...TTGGAGTGTCCCTTCTTTACTCTTTGTCAATCGGAATCTTTTATGTCTAGTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS GCA 72 bp | GTCAGGCCCAGGACTGCCCAGCCAACTGGTCTCCTCTaGCAAGGGGGAGGCCTCTTCCTGTTCCACTTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: VRPRTAQPTGLL*QGGGLFLFHFH Trigger: GTGAAAGTGGAACAGGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS GCA 72 bp | CCTCTTCCTGTTCCACTTTCACCACTAGAAGCCCAGTaGCCTCTTCTGCAGACCGAGCGTTTAGGGCTGCGG | + |
|
Preference number: 6 (lower is better) Translates to: PLPVPLSPLEAQ*PLLQTERLGLR Trigger: CCGCAGCCCTAAACGCTCGGTCTGCAGAAGAGGGCACTGGGCTTCTAGTGGTGAAAGTGGAACAGGAAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS CAA 90 bp | CCACTGCCACCTTGCAGCAGAGAAGTTCGCGACTCCATTCTCCCGTaGAAACCTGTGGAGGTGTGTCATCCAGCTGCCTGTCCAAGTACT | + |
|
Preference number: 6 (lower is better) Translates to: PLPPCSREVRDSILP*KPVEVCHPAACPST Trigger: AGTACTTGGACAGGCAGCTGGATGACACACCTCCACAGGTTTCAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS CAA 90 bp | AAGTGCCGCCTGGTTCCTGTGGCACTCTTCTGTGCTGTCTGTAACTaGCCTTCCTGCTCACTGGCTTCTGCACCTGTAGGAATCGGGACA | + |
|
Preference number: 6 (lower is better) Translates to: KCRLVPVALFCAVCN*PSCSLASAPVGIGT Trigger: TGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAGCACAGAAGAGTGCCACAGGAACCAGGCGGCACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS TCA 72 bp | CTTGCAGCAGAGAAGTTCGCGACTCCATTCTCCCGTTaGAACCTGTGGAGGTGTGTCATCCAGCTGCCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: LAAEKFATPFSR*NLWRCVIQLPV Trigger: GACAGGCAGCTGGATGACACACCTCCACAGGTTTCAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062609.6 |
||
| CDS GCA 72 bp | TTTGTGAGTCCTGGGATGGTGTCACCACTGCCACCTTaGAGCAGAGAAGTTCGCGACTCCATTCTCCCGTTG | + |
|
Preference number: 6 (lower is better) Translates to: FVSPGMVSPLPP*SREVRDSILPL Trigger: CAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTGGTGACACCATCCCAGGACTCACAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS CCA 72 bp | GCAAGTCCCTGGTCTCAGGCTTCATTTCCAGCCCTCTaGCCTGTAAGGGCGAACACTCCAAAGATTCCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: ASPWSQASFPAL*PVRANTPKIPE Trigger: CTCAGGAATCTTTGGAGTGTTCGCCCTTACAGGCCAGAGGGCTGGAAATGAAGCCTGAGACCAGGGACTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS CAA 72 bp | CTTTGTGAGTCCTGGGATGGTGTCACCACTGCCACCTaGCAGCAGAGAAGTTCGCGACTCCATTCTCCCGTT | + |
|
Preference number: 6 (lower is better) Translates to: LCESWDGVTTAT*QQRSSRLHSPV Trigger: AACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTGGTGACACCATCCCAGGACTCACAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS CCA 72 bp | TTTGGTCCCTGTATTCTTCAGCTCGAGGCAAGTCCCTaGTCTCAGGCTTCATTTCCAGCCCTCTGGCCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: FGPCILQLEASP*SQASFPALWPV Trigger: TACAGGCCAGAGGGCTGGAAATGAAGCCTGAGACCAGGGACTTGCCTCGAGCTGAAGAATACAGGGACCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS CCA 72 bp | CAAAGCTCTTCCCACATTCACAGCAAAAGTGCCGCCTaGTTCCTGTGGCACTCTTCTGTGCTGTCTGTAACT | + |
|
Preference number: 6 (lower is better) Translates to: QSSSHIHSKSAA*FLWHSSVLSVT Trigger: AGTTACAGACAGCACAGAAGAGTGCCACAGGAACCAGGCGGCACTTTTGCTGTGAATGTGGGAAGAGCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||
| CDS TCA 72 bp | AGGGCGAACACTCCAAAGATTCCTGAGATTCGTGCTTaGAGAGTGACTTCATTGCCTGGCAGTGGCTACTTT | + |
|
Preference number: 6 (lower is better) Translates to: RANTPKIPEIRA*RVTSLPGSGYF Trigger: AAAGTAGCCACTGCCAGGCAATGAAGTCACTCTTCAAGCACGAATCTCAGGAATCTTTGGAGTGTTCGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062609.6 ENSMUST00000225845.2 |
||