RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZKSCAN16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038630

Ensembl transcript IDs: ENSMUST00000107554.2

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGACACAGTGGTTGGCTGGCAAACTGGGTTAGAACCCAGGTTATaGGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAG +
Preference number: 1 (lower is better)
Translates to: GDTVVGWQTGLEPRL*ESRYGLFQYGSERE
Trigger: CTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTTCTAACCCAGTTTGCCAGCCAACCACTGTGTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
3UTR TCA 90 bp GGTAAAGAAAATAATATTCAGAGGGTCCAAATGACTTGTTTAAGGTaGCACAGTGGTTGGCTGGCAAACTGGGTTAGAACCCAGGTTATG +
Preference number: 1 (lower is better)
Translates to: GKENNIQRVQMTCLR*HSGWLANWVRTQVM
Trigger: CATAACCTGGGTTCTAACCCAGTTTGCCAGCCAACCACTGTGTCACCTTAAACAAGTCATTTGGACCCTCTGAATATTATTTTCTTTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
3UTR CAA 90 bp GTGAAAGGGAGACCAAAAGGAGAATTCCTTGAAGGAAACTTAAGTTaGGCTTCTCAGAATCGTTTCACATCACAGCTTTCTTCACGTCAA +
Preference number: 2 (lower is better)
Translates to: VKGRPKGEFLEGNLS*ASQNRFTSQLSSRQ
Trigger: TTGACGTGAAGAAAGCTGTGATGTGAAACGATTCTGAGAAGCCAAACTTAAGTTTCCTTCAAGGAATTCTCCTTTTGGTCTCCCTTTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
3UTR CCA 72 bp AGAAGAGGACCAAAGGGGAAGAAGTCTATTCCTGGTTaGGAACCCATTGAGGCTGAAGCTTCTAATCAATGC +
Preference number: 3 (lower is better)
Translates to: RRGPKGKKSIPG*EPIEAEASNQC
Trigger: GCATTGATTAGAAGCTTCAGCCTCAATGGGTTCCCAACCAGGAATAGACTTCTTCCCCTTTGGTCCTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp GAGGGTCCAAATGACTTGTTTAAGGTGACACAGTGGTTGGCTGGCAAACTGGGTTCGACTTTTCCCTCCTaGGCTCTCTGCGGTTTACGA +
Preference number: 4 (lower is better)
Translates to: EGPNDLFKVTQWLAGKLGSTFPS*ALCGLR
Trigger: TCGTAAACCGCAGAGAGCTCAGGAGGGAAAAGTCGA...ACCCAGTTTGCCAGCCAACCACTGTGTCACCTTAAACAAGTCATTTGGACCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp CCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACGACTGAGGCGGGAATaGGAGGGGAAACCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: PGYESPGMVFSSMAVKGRRLRRE*EGKPFS
Trigger: TGAGAAAGGTTTCCCCTCTCATTCCCGCCTCAGTCG...TCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AACCCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGTGTCAGAAGTCTGCTTaGCTCTCTTCCCAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: NPGYESPGMVFSSMAVKGCQKSA*LSSQRR
Trigger: CCTCCTCTGGGAAGAGAGTCAAGCAGACTTCTGACA...CCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR GCA 90 bp GAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAAGGAGACTCCTCTTTGCAAACTaGGGAAGCCTGAGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: ESRYGLFQYGSERETKRRLLFAN*GSLSAE
Trigger: CTCAGCACTCAGGCTTCCGCAGTTTGCAAAGAGGAG...TCTCCTTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CCA 90 bp GAGGGTCCAAATGACTTGTTTAAGGTGACACAGTGGTTGGCTGGCAAACTGGGTACTTCCCGCACTTACTaGCTTCTTCAGGATCAGGCT +
Preference number: 4 (lower is better)
Translates to: EGPNDLFKVTQWLAGKLGTSRTY*LLQDQA
Trigger: AGCCTGATCCTGAAGAAGCCAGTAAGTGCGGGAAGT...ACCCAGTTTGCCAGCCAACCACTGTGTCACCTTAAACAAGTCATTTGGACCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp GAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAAGGAGACTACTCCCAGGATGCTaGGAATTCACCCAAATCCTC +
Preference number: 4 (lower is better)
Translates to: ESRYGLFQYGSERETKRRLLPGC*EFTQIL
Trigger: GAGGATTTGGGTGAATTCTCAGCATCCTGGGAGTAG...TCTCCTTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AACCCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGCGGAAGCCTGAGTGCTaGGATCTTCCTTTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: NPGYESPGMVFSSMAVKGRKPEC*DLPFLQ
Trigger: TTGAAGAAAAGGAAGATCTCAGCACTCAGGCTTCCG...CCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AACCCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGCCGGTGTGTATCCTCTaGTGTTTTGAAAGAGAGGAG +
Preference number: 4 (lower is better)
Translates to: NPGYESPGMVFSSMAVKGPVCIL*CFEREE
Trigger: CTCCTCTCTTTCAAAACATCAGAGGATACACACCGG...CCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CCA 90 bp CCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGATGCCATGATCTTTCTTaGGTTTGCCATGTCGCCTCT +
Preference number: 4 (lower is better)
Translates to: PGYESPGMVFSSMAVKGRCHDLS*VCHVAS
Trigger: AGAGGCGACATGGCAAACCCAAGAAAGATCATGGCA...TCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAACAAACTGCGGAAGCCTaGGTGCTGAGATCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKQTAEA*VLRSSF
Trigger: AAAGGAAGATCTCAGCACTCAGGCTTCCGCAGTTTG...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AACCCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGTTTACGAGAGCTGAATaGAAGCTGAAGGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: NPGYESPGMVFSSMAVKGFTRAE*KLKGFL
Trigger: CAAGAAGCCCTTCAGCTTTCATTCAGCTCTCGTAAA...CCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR GCA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAACACCACCACCACCATTaGATCTTCTCCCAAATCCTC +
Preference number: 4 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKHHHHH*IFSQIL
Trigger: GAGGATTTGGGAGAAGATGCAATGGTGGTGGTGGTG...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAACCTTCCTTGGACCTCTaGGACATCTTAGATAAGGAG +
Preference number: 4 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKPSLDL*DILDKE
Trigger: CTCCTTATCTAAGATGTCTCAGAGGTCCAAGGAAGG...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AACCCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGCAATTCTCTAAGATTTaGGTAAAGGCTACCCCACAC +
Preference number: 4 (lower is better)
Translates to: NPGYESPGMVFSSMAVKGQFSKI*VKATPH
Trigger: GTGTGGGGTAGCCTTTACTCAAATCTTAGAGAATTG...CCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR GCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATCCACTCTGGGGACCCTaGTCTGTTCACTCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNPLWGP*SVHSKP
Trigger: TGGCTTTGAGTGAACAGAGCAGGGTCCCCAGAGTGG...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATCTACTCCGCTTGCCATaGTCTTTCTTGGGTTTGCCA +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNLLRLP*SFLGLP
Trigger: TGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAG...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR GCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATCCAAATCCTCCTCTTTaGAAACTGCGGAAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNPNPPL*KLRKPE
Trigger: CTCAGGCTTCCGCAGTTTGCAAAGAGGAGGATTTGG...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR GCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATAACCACCTGAACTTCTaGCTGAAAGACTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNNHLNF*LKDSRS
Trigger: TGACCTGGAGTCTTTCAGGCAGAAGTTCAGGTGGTT...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR GCA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAAACTGAGAGCTCTCAATaGAATTCTCTAAGATTTGAG +
Preference number: 4 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKTESSQ*NSLRFE
Trigger: CTCAAATCTTAGAGAATTGCATTGAGAGCTCTCAGT...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CCA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAATTTTCTTCAAGTGTTTaGTTCAAGTCTTCTACCAGG +
Preference number: 4 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKFSSSV*FKSSTR
Trigger: CCTGGTAGAAGACTTGAACCAAACACTTGAAGAAAA...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATTTGCCATGTCGCCTCTaGAATTCTGTCTTCAAGCCA +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNLPCRL*NSVFKP
Trigger: TGGCTTGAAGACAGAATTCCAGAGGCGACATGGCAA...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR TCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATTATCCTCTGATGTTTTaGAAGAGAGGAGCTGTGAGT +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNYPLMF*KRGAVS
Trigger: ACTCACAGCTCCTCTCTTTCAAAACATCAGAGGATA...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CCA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATTCAAGGAACCAATTTTaGGATGTCTCTTGCGTTCAG +
Preference number: 4 (lower is better)
Translates to: RLKLLINAVGSLSFELLNSRNQF*DVSCVQ
Trigger: CTGAACGCAAGAGACATCCCAAAATTGGTTCCTTGA...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp GAGGGTCCAAATGACTTGTTTAAGGTGACACAGTGGTTGGCTGGCAAACTGGGTCCAGGCTCAAAGGCCTaGCCACACTTCCCGCACTTA +
Preference number: 5 (lower is better)
Translates to: EGPNDLFKVTQWLAGKLGPGSKA*PHFPHL
Trigger: TAAGTGCGGGAAGTGTGGCAAGGCCTTTGAGCCTGG...ACCCAGTTTGCCAGCCAACCACTGTGTCACCTTAAACAAGTCATTTGGACCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 90 bp TTTCCTCGACTTTTCCCTCCTGAGCTCTCTGCGGTTTACGAGAGCTaGATGAAAGCTGAAGGGCTTCTTGCCTTCCTTGGACCTCTGAGA +
Preference number: 5 (lower is better)
Translates to: FPRLFPPELSAVYES*MKAEGLLAFLGPLR
Trigger: TCTCAGAGGTCCAAGGAAGGCAAGAAGCCCTTCAGCTTTCATTCAGCTCTCGTAAACCGCAGAGAGCTCAGGAGGGAAAAGTCGAGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 90 bp CCCCACACTTACTACACGTCTCGGTCTTACTCAAGGAACCAATTTTaGGATGTCTCTTGCGTTCAGCAGGAGATAGATGGCGACGTGGGT +
Preference number: 5 (lower is better)
Translates to: PHTYYTSRSYSRNQF*DVSCVQQEIDGDVG
Trigger: ACCCACGTCGCCATCTATCTCCTGCTGAACGCAAGAGACATCCCAAAATTGGTTCCTTGAGTAAGACCGAGACGTGTAGTAAGTGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 90 bp CTGAAAGACTCCAGGTCATCAGTATTTCCTCTTAACATACTCTCCTaGACCCTCAGAGTATCCACTCTGGGGACCCTGCTCTGTTCACTC +
Preference number: 5 (lower is better)
Translates to: LKDSRSSVFPLNILS*TLRVSTLGTLLCSL
Trigger: GAGTGAACAGAGCAGGGTCCCCAGAGTGGATACTCTGAGGGTCCAGGAGAGTATGTTAAGAGGAAATACTGATGACCTGGAGTCTTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp GAGGGTCCAAATGACTTGTTTAAGGTGACACAGTGGTTGGCTGGCAAACTGGGTGCAGAGTTCCCAGAGTaGATTCAGGGTTTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: EGPNDLFKVTQWLAGKLGAEFPE*IQGFSG
Trigger: CCCAGAAAAACCCTGAATCAACTCTGGGAACTCTGC...ACCCAGTTTGCCAGCCAACCACTGTGTCACCTTAAACAAGTCATTTGGACCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS GCA 90 bp AGGTCCCTTCTGTCTCAGATTCTCTATTCTCATGGCTACTCCGCTTaGCATGATCTTTCTTGGGTTTGCCATGTCGCCTCTGGAATTCTG +
Preference number: 5 (lower is better)
Translates to: RSLLSQILYSHGYSA*HDLSWVCHVASGIL
Trigger: CAGAATTCCAGAGGCGACATGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAGCCATGAGAATAGAGAATCTGAGACAGAAGGGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 90 bp CCTTCTGTCTCAGATTCTCTATTCTCATGGCTACTCCGCTTGCCATaGTCTTTCTTGGGTTTGCCATGTCGCCTCTGGAATTCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: PSVSDSLFSWLLRLP*SFLGLPCRLWNSVF
Trigger: GAAGACAGAATTCCAGAGGCGACATGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAGCCATGAGAATAGAGAATCTGAGACAGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAAGTGTCAGAAGTCTGCTaGACTCTCTTCCCAGAGGAG +
Preference number: 5 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKVSEVC*TLFPEE
Trigger: CTCCTCTGGGAAGAGAGTCAAGCAGACTTCTGACAC...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 90 bp CAGATTCTCTATTCTCATGGCTACTCCGCTTGCCATGATCTTTCTTaGGTTTGCCATGTCGCCTCTGGAATTCTGTCTTCAAGCCATAAC +
Preference number: 5 (lower is better)
Translates to: QILYSHGYSACHDLS*VCHVASGILSSSHN
Trigger: GTTATGGCTTGAAGACAGAATTCCAGAGGCGACATGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAGCCATGAGAATAGAGAATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp GAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAAGGAGAATTTTGGGATGTCTCTaGCGTTCAGCAGGAGATAGA +
Preference number: 5 (lower is better)
Translates to: ESRYGLFQYGSERETKRRILGCL*RSAGDR
Trigger: TCTATCTCCTGCTGAACGCAAGAGACATCCCAAAAT...TCTCCTTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp AACCCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGGTATCCTCTGATGTTTaGAAAGAGAGGAGCTGTGAG +
Preference number: 5 (lower is better)
Translates to: NPGYESPGMVFSSMAVKGVSSDV*KERSCE
Trigger: CTCACAGCTCCTCTCTTTCAAAACATCAGAGGATAC...CCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 90 bp ATTGCATCTTCTCCCAAATCCTCCTCTTTGCAAACTGCGGAAGCCTaGGTGCTGAGATCTTCCTTTTCTTCAAGTGTTTGGTTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: IASSPKSSSLQTAEA*VLRSSFSSSVWFKS
Trigger: AGACTTGAACCAAACACTTGAAGAAAAGGAAGATCTCAGCACTCAGGCTTCCGCAGTTTGCAAAGAGGAGGATTTGGGAGAAGATGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp CCAGGTTATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACTTTTCTTCAAGTGTTaGGTTCAAGTCTTCTACCAG +
Preference number: 5 (lower is better)
Translates to: PGYESPGMVFSSMAVKGRLFFKC*VQVFYQ
Trigger: CTGGTAGAAGACTTGAACCAAACACTTGAAGAAAAG...TCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATAACCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp TATGAGAGTCCAGGTATGGTCTTTTCCAGTATGGCAGTGAAAGGGAGACCAAAACTCAAGGAACCAATTTaGGGATGTCTCTTGCGTTCA +
Preference number: 5 (lower is better)
Translates to: YESPGMVFSSMAVKGRPKLKEPI*GCLLRS
Trigger: TGAACGCAAGAGACATCCCAAAATTGGTTCCTTGAG...TTTTGGTCTCCCTTTCACTGCCATACTGGAAAAGACCATACCTGGACTCTCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 90 bp AAGATTTCTTTTTCCAGTACCCTTGGCAATTTAACCCACTTCAGATaGGAAATCAAGTCAAGTTTGGAAACCGGAGAGCCCAAAAACTCT +
Preference number: 5 (lower is better)
Translates to: KISFSSTLGNLTHFR*EIKSSLETGEPKNS
Trigger: AGAGTTTTTGGGCTCTCCGGTTTCCAAACTTGACTTGATTTCCCATCTGAAGTGGGTTAAATTGCCAAGGGTACTGGAAAAAGAAATCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS-3UTR CAA 90 bp AGGCTGAAGCTTCTAATCAATGCAGTGGGTAGTTTATCATTCGAGCTTTTAAATTCCCGCATGGAGTCTTaGATGATACATGATACTACT +
Preference number: 5 (lower is better)
Translates to: RLKLLINAVGSLSFELLNSRMES*MIHDTT
Trigger: AGTAGTATCATGTATCATCAAAGACTCCATGCGGGA...ATTTAAAAGCTCGAATGATAAACTACCCACTGCATTGATTAGAAGCTTCAGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp ACCAGGGTCACCACCTCCACACTACTCCCAGGATGCTaGGAATTCACCCAAATCCTCATCTCTCCAGGCAGA +
Preference number: 6 (lower is better)
Translates to: TRVTTSTLLPGC*EFTQILISPGR
Trigger: TCTGCCTGGAGAGATGAGGATTTGGGTGAATTCTCAGCATCCTGGGAGTAGTGTGGAGGTGGTGACCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp TCCCTCCTGAGCTCTCTGCGGTTTACGAGAGCTGAATaGAAGCTGAAGGGCTTCTTGCCTTCCTTGGACCTC +
Preference number: 6 (lower is better)
Translates to: SLLSSLRFTRAE*KLKGFLPSLDL
Trigger: GAGGTCCAAGGAAGGCAAGAAGCCCTTCAGCTTTCATTCAGCTCTCGTAAACCGCAGAGAGCTCAGGAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp CTTTTCTTTCCGGTCAGCTTTGTTGTGTGGCTTGGGTaGGGCGCTAGCTTTGGGGGCCTTTCTACACTCGAG +
Preference number: 6 (lower is better)
Translates to: LFFPVSFVVWLG*GASFGGLSTLE
Trigger: CTCGAGTGTAGAAAGGCCCCCAAAGCTAGCGCCTCACCCAAGCCACACAACAAAGCTGACCGGAAAGAAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp TCTCGGGTTCACCGCATTTCCTCGACTTTTCCCTCCTaGGCTCTCTGCGGTTTACGAGAGCTGAATGAAAGC +
Preference number: 6 (lower is better)
Translates to: SRVHRISSTFPS*ALCGLRELNES
Trigger: GCTTTCATTCAGCTCTCGTAAACCGCAGAGAGCTCAGGAGGGAAAAGTCGAGGAAATGCGGTGAACCCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp CCAGTGTGGCACCTCAAATGCCGACTGAGGCGGGAATaGGAGGGGAAACCTTTCTCACAGTGTGTACATTTG +
Preference number: 6 (lower is better)
Translates to: PVWHLKCRLRRE*EGKPFSQCVHL
Trigger: CAAATGTACACACTGTGAGAAAGGTTTCCCCTCTCATTCCCGCCTCAGTCGGCATTTGAGGTGCCACACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 72 bp CAGGCTCAAAGGCCTTGCCACACTTCCCGCACTTACTaGCTTCTTCAGGATCAGGCTCCTTGTCTTGATTTG +
Preference number: 6 (lower is better)
Translates to: QAQRPCHTSRTY*LLQDQAPCLDL
Trigger: CAAATCAAGACAAGGAGCCTGATCCTGAAGAAGCCAGTAAGTGCGGGAAGTGTGGCAAGGCCTTTGAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp CTTTTCCCTCCTGAGCTCTCTGCGGTTTACGAGAGCTaGATGAAAGCTGAAGGGCTTCTTGCCTTCCTTGGA +
Preference number: 6 (lower is better)
Translates to: LFPPELSAVYES*MKAEGLLAFLG
Trigger: TCCAAGGAAGGCAAGAAGCCCTTCAGCTTTCATTCAGCTCTCGTAAACCGCAGAGAGCTCAGGAGGGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 72 bp TCCAGGTCATCAGTATTTCCTCTTAACATACTCTCCTaGACCCTCAGAGTATCCACTCTGGGGACCCTGCTC +
Preference number: 6 (lower is better)
Translates to: SRSSVFPLNILS*TLRVSTLGTLL
Trigger: GAGCAGGGTCCCCAGAGTGGATACTCTGAGGGTCCAGGAGAGTATGTTAAGAGGAAATACTGATGACCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CAA 72 bp GAGGCTTTCCGATGTTTGAGTGTGTCAGAAGTCTGCTaGACTCTCTTCCCAGAGGAGGTCCCTTCTGTCTCA +
Preference number: 6 (lower is better)
Translates to: EAFRCLSVSEVC*TLFPEEVPSVS
Trigger: TGAGACAGAAGGGACCTCCTCTGGGAAGAGAGTCAAGCAGACTTCTGACACACTCAAACATCGGAAAGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CAA 90 bp AACTGCGGAAGCCTGAGTGCTGAGATCTTCCTTTTCTTCAAGTGTTaGGTTCAAGTCTTCTACCAGGGTCACCACCTCCACACTACTCCC +
Preference number: 6 (lower is better)
Translates to: NCGSLSAEIFLFFKC*VQVFYQGHHLHTTP
Trigger: GGGAGTAGTGTGGAGGTGGTGACCCTGGTAGAAGACTTGAACCAAACACTTGAAGAAAAGGAAGATCTCAGCACTCAGGCTTCCGCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS GCA 72 bp CATGGCTACTCCGCTTGCCATGATCTTTCTTGGGTTTaGCATGTCGCCTCTGGAATTCTGTCTTCAAGCCAT +
Preference number: 6 (lower is better)
Translates to: HGYSACHDLSWV*HVASGILSSSH
Trigger: ATGGCTTGAAGACAGAATTCCAGAGGCGACATGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAGCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS GCA 72 bp CTGTCTCAGATTCTCTATTCTCATGGCTACTCCGCTTaGCATGATCTTTCTTGGGTTTGCCATGTCGCCTCT +
Preference number: 6 (lower is better)
Translates to: LSQILYSHGYSA*HDLSWVCHVAS
Trigger: AGAGGCGACATGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAGCCATGAGAATAGAGAATCTGAGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CAA 72 bp AGCCTGAGTGCTGAGATCTTCCTTTTCTTCAAGTGTTaGGTTCAAGTCTTCTACCAGGGTCACCACCTCCAC +
Preference number: 6 (lower is better)
Translates to: SLSAEIFLFFKC*VQVFYQGHHLH
Trigger: GTGGAGGTGGTGACCCTGGTAGAAGACTTGAACCAAACACTTGAAGAAAAGGAAGATCTCAGCACTCAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp TCTCCCAAATCCTCCTCTTTGCAAACTGCGGAAGCCTaGGTGCTGAGATCTTCCTTTTCTTCAAGTGTTTGG +
Preference number: 6 (lower is better)
Translates to: SPKSSSLQTAEA*VLRSSFSSSVW
Trigger: CCAAACACTTGAAGAAAAGGAAGATCTCAGCACTCAGGCTTCCGCAGTTTGCAAAGAGGAGGATTTGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp TCAGATTCTCTATTCTCATGGCTACTCCGCTTGCCATaGTCTTTCTTGGGTTTGCCATGTCGCCTCTGGAAT +
Preference number: 6 (lower is better)
Translates to: SDSLFSWLLRLP*SFLGLPCRLWN
Trigger: ATTCCAGAGGCGACATGGCAAACCCAAGAAAGATCATGGCAAGCGGAGTAGCCATGAGAATAGAGAATCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CCA 72 bp TACTACACGTCTCGGTCTTACTCAAGGAACCAATTTTaGGATGTCTCTTGCGTTCAGCAGGAGATAGATGGC +
Preference number: 6 (lower is better)
Translates to: YYTSRSYSRNQF*DVSCVQQEIDG
Trigger: GCCATCTATCTCCTGCTGAACGCAAGAGACATCCCAAAATTGGTTCCTTGAGTAAGACCGAGACGTGTAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS CAA 90 bp ACCCTTGGCAATTTAACCCACTTCAGATGGGAAATCAAGTCAAGTTaGGAAACCGGAGAGCCCAAAAACTCTAGGGTCCCTAAGTTTTCC +
Preference number: 6 (lower is better)
Translates to: TLGNLTHFRWEIKSS*ETGEPKNSRVPKFS
Trigger: GGAAAACTTAGGGACCCTAGAGTTTTTGGGCTCTCCGGTTTCCAAACTTGACTTGATTTCCCATCTGAAGTGGGTTAAATTGCCAAGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp AATCCTCCTCTTTGCAAACTGCGGAAGCCTGAGTGCTaGGATCTTCCTTTTCTTCAAGTGTTTGGTTCAAGT +
Preference number: 6 (lower is better)
Translates to: NPPLCKLRKPEC*DLPFLQVFGSS
Trigger: ACTTGAACCAAACACTTGAAGAAAAGGAAGATCTCAGCACTCAGGCTTCCGCAGTTTGCAAAGAGGAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2
CDS TCA 72 bp TTACCACACTTCTTACATTCGTATTGTACGTTAGTGTaGGTTTTGACATGTTCAATGAGGATTGTGCTCCGG +
Preference number: 6 (lower is better)
Translates to: LPHFLHSYCTLV*VLTCSMRIVLR
Trigger: CCGGAGCACAATCCTCATTGAACATGTCAAAACTCACACTAACGTACAATACGAATGTAAGAAGTGTGGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107554.2