Pregenerated sensors for ZIK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030393Ensembl transcript IDs: ENSMUST00000032551.8
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGCATTTATCAGTGTACAAATCAGAGCAACGGGGAGAAGGCAGTaGCCAACTGATAATCAGAAGGCTGGAAACATTCACCTAACTGTC | + |
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Preference number: 1 (lower is better) Translates to: KAFISVQIRATGRRQ*PTDNQKAGNIHLTV Trigger: GACAGTTAGGTGAATGTTTCCAGCCTTCTGATTATCAGTTGGTCACTGCCTTCTCCCCGTTGCTCTGATTTGTACACTGATAAATGCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 90 bp | CTTTTGTATGCCAATGATGATTCACATCTAGCTCTGATCACCTCATaGGTGGTCATCTTATTGGCTGGTGCCTATGGAATAATTCCTATC | + |
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Preference number: 1 (lower is better) Translates to: LLYANDDSHLALITS*VVILLAGAYGIIPI Trigger: GATAGGAATTATTCCATAGGCACCAGCCAATAAGATGACCACTCATGAGGTGATCAGAGCTAGATGTGAATCATCATTGGCATACAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 90 bp | ACCAAGTTGAGACCCTCTATAAAAGCTTTCCATTCTTTCCTAAAATaGTCAGTCTGTTTACCAGCCTTCCCACTTAGTAAACTGCACTCT | + |
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Preference number: 1 (lower is better) Translates to: TKLRPSIKAFHSFLK*SVCLPAFPLSKLHS Trigger: AGAGTGCAGTTTACTAAGTGGGAAGGCTGGTAAACAGACTGATCATTTTAGGAAAGAATGGAAAGCTTTTATAGAGGGTCTCAACTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 90 bp | GAAGTAGCAACAAAAATAATTCTATGGTTGAGGGTTACCACAGCATaGGGAACTGTATTAAAGAATTGCAGCATCAGAAAGGTTGAGAAC | + |
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Preference number: 1 (lower is better) Translates to: EVATKIILWLRVTTA*GTVLKNCSIRKVEN Trigger: GTTCTCAACCTTTCTGATGCTGCAATTCTTTAATACAGTTCCTCATGCTGTGGTAACCCTCAACCATAGAATTATTTTTGTTGCTACTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR GCA 90 bp | GCAGAGACATTTGTGAATACCAGACTGCAAACACAGCAGCTGGAATaGAATTATAACAGCTACATTCTAAGACTAAAGAATCTTCATTTC | + |
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Preference number: 1 (lower is better) Translates to: AETFVNTRLQTQQLE*NYNSYILRLKNLHF Trigger: GAAATGAAGATTCTTTAGTCTTAGAATGTAGCTGTTATAATTGCATTCCAGCTGCTGTGTTTGCAGTCTGGTATTCACAAATGTCTCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGTACAAAGCTCAGAACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCTTCCATCTGGCTGGCTaGAGACTCCACTATACCCAT | + |
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Preference number: 2 (lower is better) Translates to: KVQSSELLISANQKAWYPFHLAG*RLHYTH Trigger: ATGGGTATAGTGGAGTCTTCAGCCAGCCAGATGGAA...GGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR CAA 90 bp | AGAACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCCCATTTaGATTGAACTCTGTCCTCATATACAGATAAGGGCAGCCTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: RTPNFCKPEGLVSPI*IELCPHIQIRAAFC Trigger: ACAAAAGGCTGCCCTTATCTGTATATGAGGACAGAGTTCAATCAAAATGGGGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CCA 90 bp | ATCAAGTTAAACTCCACTATCCCACAAAACCATACCATTTTTGACAATGACCTCTTGGCCAGTTCAGGATaGGCAAAGCAGTTGCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: IKLNSTIPQNHTIFDNDLLASSG*AKQLLN Trigger: GTTCAGCAACTGCTTTGCCCATCCTGAACTGGCCAA...GAGGTCATTGTCAAAAATGGTATGGTTTTGTGGGATAGTGGAGTTTAACTTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCCTTACCATGATGGTGTAATCATTGCACACTGGTCATGTGGTAGAGAACGAACACTGGTACAAAAATaGCAAAGGTCTTGGCCAGTT | + |
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Preference number: 2 (lower is better) Translates to: FPYHDGVIIAHWSCGRERTLVQK*QRSWPV Trigger: AACTGGCCAAGACCTTTGCCATTTTTGTACCAGTGT...TCGTTCTCTACCACATGACCAGTGTGCAATGATTACACCATCATGGTAAGGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATACAGAAGTCCCAGCTGTTaGCCTGGGAAGCAATACAAA | + |
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Preference number: 2 (lower is better) Translates to: TRLEVNDQVKLHYPTKPYRSPSC*PGKQYK Trigger: TTTGTATTGCTTCCCAGGCCAACAGCTGGGACTTCT...GTATGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CCA 90 bp | ATAACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCAGAGTCACATTCCATCTaGCTGGCTGAAGACTCCACT | + |
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Preference number: 2 (lower is better) Translates to: ITRLEVNDQVKLHYPTKPESHSI*LAEDST Trigger: AGTGGAGTCTTCAGCCAGCCAGATGGAATGTGACTC...TGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR TCA 90 bp | ACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATACTGCCTTTCCTTACCATaGTGGTGTAATCATTGCACA | + |
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Preference number: 2 (lower is better) Translates to: TRLEVNDQVKLHYPTKPYCLSLP*WCNHCT Trigger: TGTGCAATGATTACACCATCATGGTAAGGAAAGGCA...GTATGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGTACAAAGCTCAGAACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCACACAGCAGCTGGAATaGAATTATAACAGCTACATT | + |
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Preference number: 2 (lower is better) Translates to: KVQSSELLISANQKAWYPTQQLE*NYNSYI Trigger: AATGTAGCTGTTATAATTGCATTCCAGCTGCTGTGT...GGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CCA 90 bp | ATTCAAATGGCTCAAAGCAAACTCATTAACCACACAAGTACTAGCAAGAATGTTTCCCAGCTGTTGGCCTaGGAAGCAATACAAATTTGC | + |
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Preference number: 2 (lower is better) Translates to: IQMAQSKLINHTSTSKNVSQLLA*EAIQIC Trigger: GCAAATTTGTATTGCTTCCCAGGCCAACAGCTGGGA...AACATTCTTGCTAGTACTTGTGTGGTTAATGAGTTTGCTTTGAGCCATTTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR GCA 90 bp | ACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATACTCCCACTTAGTAAACTaGACTCTTAAGAGTAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: TRLEVNDQVKLHYPTKPYSHLVN*TLKSKV Trigger: TACCTTACTCTTAAGAGTGCAGTTTACTAAGTGGGA...GTATGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCAAATGGCTCAAAGCAAACTCATTAACCACACAAGTACTAGCAAGAATGTTCATTCTTTCCTAAAATaGTCAGTCTGTTTACCAGCC | + |
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Preference number: 2 (lower is better) Translates to: IQMAQSKLINHTSTSKNVHSFLK*SVCLPA Trigger: GGCTGGTAAACAGACTGATCATTTTAGGAAAGAATG...AACATTCTTGCTAGTACTTGTGTGGTTAATGAGTTTGCTTTGAGCCATTTGAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR TCA 90 bp | ATCAAGTTAAACTCCACTATCCCACAAAACCATACCATTTTTGACAATGACCTCGACATCTTCTTGAGATaGTCACAGAAAGTTTTCAAC | + |
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Preference number: 2 (lower is better) Translates to: IKLNSTIPQNHTIFDNDLDIFLR*SQKVFN Trigger: GTTGAAAACTTTCTGTGATCATCTCAAGAAGATGTC...GAGGTCATTGTCAAAAATGGTATGGTTTTGTGGGATAGTGGAGTTTAACTTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR GCA 90 bp | ATTCAAATGGCTCAAAGCAAACTCATTAACCACACAAGTACTAGCAAGAATGTTCATCTTATTGGCTGGTaGCTATGGAATAATTCCTAT | + |
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Preference number: 2 (lower is better) Translates to: IQMAQSKLINHTSTSKNVHLIGW*LWNNSY Trigger: ATAGGAATTATTCCATAGGCACCAGCCAATAAGATG...AACATTCTTGCTAGTACTTGTGTGGTTAATGAGTTTGCTTTGAGCCATTTGAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR CCA 72 bp | GGTACAAAAATGGCAAAGGTCTTGGCCAGTTCAGGATaGGCAAAGCAGTTGCTGAACCTACTTGTGCCTGAA | + |
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Preference number: 3 (lower is better) Translates to: GTKMAKVLASSG*AKQLLNLLVPE Trigger: TTCAGGCACAAGTAGGTTCAGCAACTGCTTTGCCCATCCTGAACTGGCCAAGACCTTTGCCATTTTTGTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGTACAAAGCTCAGAACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCGGATGGGCAAAGCAGTaGCTGAACCTACTTGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: KVQSSELLISANQKAWYPGWAKQ*LNLLVP Trigger: AGGCACAAGTAGGTTCAGCAACTGCTTTGCCCATCC...GGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CAA 90 bp | CCCAGCTGTTGGCCTGGGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCCAGGCAATCTGCAGTTaGCCTTTCCTTACCATGATG | + |
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Preference number: 3 (lower is better) Translates to: PSCWPGKQYKFAFFILLSQAICS*PFLTMM Trigger: CATCATGGTAAGGAAAGGCAAACTGCAGATTGCCTG...GGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCCCAGGCCAACAGCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 72 bp | ATCAGTGTACAAATCAGAGCAACGGGGAGAAGGCAGTaGCCAACTGATAATCAGAAGGCTGGAAACATTCAC | + |
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Preference number: 3 (lower is better) Translates to: ISVQIRATGRRQ*PTDNQKAGNIH Trigger: GTGAATGTTTCCAGCCTTCTGATTATCAGTTGGTCACTGCCTTCTCCCCGTTGCTCTGATTTGTACACTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 72 bp | GCCAATGATGATTCACATCTAGCTCTGATCACCTCATaGGTGGTCATCTTATTGGCTGGTGCCTATGGAATA | + |
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Preference number: 3 (lower is better) Translates to: ANDDSHLALITS*VVILLAGAYGI Trigger: TATTCCATAGGCACCAGCCAATAAGATGACCACTCATGAGGTGATCAGAGCTAGATGTGAATCATCATTGGC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 72 bp | TACAAGTCCGAGAACACAAGGGAGATCTTAACAGGGTaGGGTAAGTCACAGACAAGTCCATCATCACAAAGA | + |
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Preference number: 3 (lower is better) Translates to: YKSENTREILTG*GKSQTSPSSQR Trigger: TCTTTGTGATGATGGACTTGTCTGTGACTTACCTCACCCTGTTAAGATCTCCCTTGTGTTCTCGGACTTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR GCA 72 bp | TCTGATCACCTCATGAGTGGTCATCTTATTGGCTGGTaGCTATGGAATAATTCCTATCCAGGCACACTCTTT | + |
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Preference number: 3 (lower is better) Translates to: SDHLMSGHLIGW*LWNNSYPGTLF Trigger: AAAGAGTGTGCCTGGATAGGAATTATTCCATAGGCACCAGCCAATAAGATGACCACTCATGAGGTGATCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR CCA 72 bp | CACCTCATGAGTGGTCATCTTATTGGCTGGTGCCTATaGAATAATTCCTATCCAGGCACACTCTTTATACAG | + |
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Preference number: 3 (lower is better) Translates to: HLMSGHLIGWCL*NNSYPGTLFIQ Trigger: CTGTATAAAGAGTGTGCCTGGATAGGAATTATTCCATAGGCACCAGCCAATAAGATGACCACTCATGAGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR GCA 72 bp | GATCAGTCTGTTTACCAGCCTTCCCACTTAGTAAACTaGACTCTTAAGAGTAAGGTAGCTTTAGGGATAAGG | + |
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Preference number: 3 (lower is better) Translates to: DQSVYQPSHLVN*TLKSKVALGIR Trigger: CCTTATCCCTAAAGCTACCTTACTCTTAAGAGTGCAGTTTACTAAGTGGGAAGGCTGGTAAACAGACTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR GCA 72 bp | GTGACTCAAAGTACAAAGCTCAGAACTCCTAATTTCTaGAAACCAGAAGGCTTGGTATCCCCCATTTTGATT | + |
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Preference number: 3 (lower is better) Translates to: VTQSTKLRTPNF*KPEGLVSPILI Trigger: AATCAAAATGGGGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTTGAGTCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGTACAAAGCTCAGAACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCTCCATAAATCCTCCATaGAAGAATTCTTCCAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: KVQSSELLISANQKAWYPSINPP*KNSSRQ Trigger: TTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGA...GGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CAA 90 bp | ATTCAAATGGCTCAAAGCAAACTCATTAACCACACAAGTACTAGCAAGAATGTTCACTGTCTACATCAGTaGTTCTCAATGGGTCGTGAC | + |
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Preference number: 3 (lower is better) Translates to: IQMAQSKLINHTSTSKNVHCLHQ*FSMGRD Trigger: GTCACGACCCATTGAGAACAACTGATGTAGACAGTG...AACATTCTTGCTAGTACTTGTGTGGTTAATGAGTTTGCTTTGAGCCATTTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 72 bp | AGACCCTCTATAAAAGCTTTCCATTCTTTCCTAAAATaGTCAGTCTGTTTACCAGCCTTCCCACTTAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: RPSIKAFHSFLK*SVCLPAFPLSK Trigger: TTTACTAAGTGGGAAGGCTGGTAAACAGACTGATCATTTTAGGAAAGAATGGAAAGCTTTTATAGAGGGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR-3UTR CAA 90 bp | ATCAAGTTAAACTCCACTATCCCACAAAACCATACCATTTTTGACAATGACCTCAGCCAAAGACAAAGATaGTGTGCACTTTTAAAAGAG | + |
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Preference number: 3 (lower is better) Translates to: IKLNSTIPQNHTIFDNDLSQRQR*CALLKE Trigger: CTCTTTTAAAAGTGCACACAATCTTTGTCTTTGGCT...GAGGTCATTGTCAAAAATGGTATGGTTTTGTGGGATAGTGGAGTTTAACTTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR TCA 72 bp | ACAAAAATAATTCTATGGTTGAGGGTTACCACAGCATaGGGAACTGTATTAAAGAATTGCAGCATCAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: TKIILWLRVTTA*GTVLKNCSIRK Trigger: CTTTCTGATGCTGCAATTCTTTAATACAGTTCCTCATGCTGTGGTAACCCTCAACCATAGAATTATTTTTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR GCA 72 bp | TTTGTGAATACCAGACTGCAAACACAGCAGCTGGAATaGAATTATAACAGCTACATTCTAAGACTAAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: FVNTRLQTQQLE*NYNSYILRLKN Trigger: ATTCTTTAGTCTTAGAATGTAGCTGTTATAATTGCATTCCAGCTGCTGTGTTTGCAGTCTGGTATTCACAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | GGGGACCAATTTTCCATAAATCCTCCATTGAAGAATTCTTCCAGGCAATCTGCATCACACAGCCCTGCATaGGGGCCATATCCATTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GDQFSINPPLKNSSRQSASHSPA*GPYPFL Trigger: CAGAAATGGATATGGCCCTCATGCAGGGCTGTGTGA...TGCAGATTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGAAAATTGGTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | AAAGTACAAAGCTCAGAACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCGTTTTGGGACAGACCTaGGACTTCAGAAGGCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: KVQSSELLISANQKAWYPVLGQT*DFRRLS Trigger: ACTGAGCCTTCTGAAGTCTCAGGTCTGTCCCAAAAC...GGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR GCA 90 bp | TCCATAAATCCTCCATTGAAGAATTCTTCCAGGCAATCTGCAGTTTGCCTTTCCTCTGTACTATGTTTCTaGCCAGGTAGACCAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SINPPLKNSSRQSAVCLSSVLCF*PGRPGR Trigger: CCTGCCTGGTCTACCTGGGCAGAAACATAGTACAGA...GGAAAGGCAAACTGCAGATTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR GCA 90 bp | TTTCCTTACCATGATGGTGTAATCATTGCACACTGGTCATGTGGTAGAGAACGAGATCAAGGGAGTATTTaGCACGGAAGGTCTTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: FPYHDGVIIAHWSCGRERDQGSI*HGRSFH Trigger: GTGGAAAGACCTTCCGTGGCAAATACTCCCTTGATC...TCGTTCTCTACCACATGACCAGTGTGCAATGATTACACCATCATGGTAAGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | CCCAGCTGTTGGCCTGGGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGACTTGTCACTTTCATaGCTTGTTTCTTTCCTACCC | + |
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Preference number: 4 (lower is better) Translates to: PSCWPGKQYKFAFFILLSDLSLS*LVSFLP Trigger: GGGTAGGAAAGAAACAAGTCATGAAAGTGACAAGTC...GGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCCCAGGCCAACAGCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | GGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGTGCAGAGGTAAACCAGTGTGTATTCTACGGTaGTCATTCAGGTGGGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GSNTNLLSLFCCPCRGKPVCILR*SFRWEV Trigger: GACCTCCCACCTGAATGATCACCGTAGAATACACAC...TGGTTTACCTCTGCACGGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CCA 90 bp | GGGGACCAATTTTCCATAAATCCTCCATTGAAGAATTCTTCCAGGCAATCTGCAAGTCTCCATTCTTCATaGGAGAAGCAAATGGCCACA | + |
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Preference number: 4 (lower is better) Translates to: GDQFSINPPLKNSSRQSASLHSS*EKQMAT Trigger: TGTGGCCATTTGCTTCTCCCATGAAGAATGGAGACT...TGCAGATTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGAAAATTGGTCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CCA 90 bp | CCCAGCTGTTGGCCTGGGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGTGTTTGCTTTTGACTaGAAAGGCTCTGACACTCTT | + |
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Preference number: 4 (lower is better) Translates to: PSCWPGKQYKFAFFILLSVFAFD*KGSDTL Trigger: AAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACAC...GGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCCCAGGCCAACAGCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR CAA 72 bp | AAGCTCAGAACTCCTAATTTCTGCAAACCAGAAGGCTaGGTATCCCCCATTTTGATTGAACTCTGTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: KLRTPNFCKPEG*VSPILIELCPH Trigger: ATGAGGACAGAGTTCAATCAAAATGGGGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | TTTCCTTACCATGATGGTGTAATCATTGCACACTGGTCATGTGGTAGAGAACGAGTGCTGATCAACTTTTaGACTTGCCTCTGTACTATG | + |
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Preference number: 4 (lower is better) Translates to: FPYHDGVIIAHWSCGRERVLINF*TCLCTM Trigger: CATAGTACAGAGGCAAGTTCAAAAGTTGATCAGCAC...TCGTTCTCTACCACATGACCAGTGTGCAATGATTACACCATCATGGTAAGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | TTTTTCTCAAGTACGGATTTGGAGGAGCTAAATGATGTTAGGCCTTCAGCTGAAGCTCTGACACTCTTCTaGCTTGTCACTTTCATGACT | + |
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Preference number: 4 (lower is better) Translates to: FFSSTDLEELNDVRPSAEALTLF*LVTFMT Trigger: AGTCATGAAAGTGACAAGTCAGAAGAGTGTCAGAGC...TTCAGCTGAAGGCCTAACATCATTTAGCTCCTCCAAATCCGTACTTGAGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR GCA 90 bp | TCCATAAATCCTCCATTGAAGAATTCTTCCAGGCAATCTGCAGTTTGCCTTTCCTCATCTTCTGTTTTATaGCCACAACCCTGGGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: SINPPLKNSSRQSAVCLSSSSVL*PQPWEF Trigger: AAACTCCCAGGGTTGTGGGCATAAAACAGAAGATGA...GGAAAGGCAAACTGCAGATTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR GCA 90 bp | GGGGACCAATTTTCCATAAATCCTCCATTGAAGAATTCTTCCAGGCAATCTGCAAGGCACAAAATGTCTTaGAGAATCGGGACACACTTT | + |
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Preference number: 4 (lower is better) Translates to: GDQFSINPPLKNSSRQSARHKMS*RIGTHF Trigger: AAAGTGTGTCCCGATTCTGCAAGACATTTTGTGCCT...TGCAGATTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGAAAATTGGTCCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| 3UTR CAA 72 bp | AATTTCTGCAAACCAGAAGGCTTGGTATCCCCCATTTaGATTGAACTCTGTCCTCATATACAGATAAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: NFCKPEGLVSPI*IELCPHIQIRA Trigger: TGCCCTTATCTGTATATGAGGACAGAGTTCAATCAAAATGGGGGATACCAAGCCTTCTGGTTTGCAGAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | ATAACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCAAACCCTGGGAGTTTATaGGTGCAAAGTTCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: ITRLEVNDQVKLHYPTKPNPGSL*VQSSAA Trigger: TGCTGCAGAACTTTGCACTCATAAACTCCCAGGGTT...TGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CCA 90 bp | ACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATACTTTCAACATCCCAACTaGGGAAGGACTTTGCTGACA | + |
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Preference number: 4 (lower is better) Translates to: TRLEVNDQVKLHYPTKPYFQHPN*GRTLLT Trigger: TGTCAGCAAAGTCCTTCCCCAGTTGGGATGTTGAAA...GTATGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CCA 90 bp | GGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGTGCAGAGGTAAACCATCCATTGGAGGTTTTTaGGTGGTGAGCAAGTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: GSNTNLLSLFCCPCRGKPSIGGF*VVSKCL Trigger: CAAACACTTGCTCACCACCCAAAAACCTCCAATGGA...TGGTTTACCTCTGCACGGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CCA 90 bp | ACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATACATGAGACCGGACTTTTaGCTAAAGGACTTTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: TRLEVNDQVKLHYPTKPYMRPDF*LKDFPH Trigger: GTGTGGAAAGTCCTTTAGCCAAAAGTCCGGTCTCAT...GTATGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR GCA 90 bp | GGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGTGCAGAGGTAAACCACTGGGAGTTTATGAGTaGAAAGTTCTGCAGCATAAC | + |
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Preference number: 4 (lower is better) Translates to: GSNTNLLSLFCCPCRGKPLGVYE*KVLQHN Trigger: GTTATGCTGCAGAACTTTGCACTCATAAACTCCCAG...TGGTTTACCTCTGCACGGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR GCA 90 bp | ATCAAGTTAAACTCCACTATCCCACAAAACCATACCATTTTTGACAATGACCTCATGAGTGCAAAGTTCTaGAGCATAACACTGAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: IKLNSTIPQNHTIFDNDLMSAKF*SITLRY Trigger: GTACCTCAGTGTTATGCTGCAGAACTTTGCACTCAT...GAGGTCATTGTCAAAAATGGTATGGTTTTGTGGGATAGTGGAGTTTAACTTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR TCA 90 bp | ATAACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATTAAGAATGGCACTTTaGCTAAAGGAATTCCCACAC | + |
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Preference number: 4 (lower is better) Translates to: ITRLEVNDQVKLHYPTKPLRMAL*LKEFPH Trigger: GTGTGGGAATTCCTTTAGTCAAAGTGCCATTCTTAA...TGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CCA 90 bp | ATTCAAATGGCTCAAAGCAAACTCATTAACCACACAAGTACTAGCAAGAATGTTAAAGTTTCTTTCCATTaGAGGTTTTTGGGTGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: IQMAQSKLINHTSTSKNVKVSFH*RFLGGE Trigger: CTCACCACCCAAAAACCTCCAATGGAAAGAAACTTT...AACATTCTTGCTAGTACTTGTGTGGTTAATGAGTTTGCTTTGAGCCATTTGAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS TCA 90 bp | GTGAGCAAGTGTTTGCTTTTGACTGGAAAGGCTCTGACACTCTTCTaGCTTGTCACTTTCATGACTTGTTTCTTTCCTACCCTCAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: VSKCLLLTGKALTLF*LVTFMTCFFPTLSA Trigger: AGCACTGAGGGTAGGAAAGAAACAAGTCATGAAAGTGACAAGTCAGAAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACACTTGCTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS CCA 90 bp | TTCCATTGGAGGTTTTTGGGTGGTGAGCAAGTGTTTGCTTTTGACTaGAAAGGCTCTGACACTCTTCTGACTTGTCACTTTCATGACTTG | + |
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Preference number: 5 (lower is better) Translates to: FHWRFLGGEQVFAFD*KGSDTLLTCHFHDL Trigger: CAAGTCATGAAAGTGACAAGTCAGAAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACACTTGCTCACCACCCAAAAACCTCCAATGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTTACCATGATGGTGTAATCATTGCACACTGGTCATGTGGTAGAGAACGATTCCATTGGAGGTTTTaGGGTGGTGAGCAAGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: FPYHDGVIIAHWSCGRERFHWRF*GGEQVF Trigger: AAACACTTGCTCACCACCCAAAAACCTCCAATGGAA...TCGTTCTCTACCACATGACCAGTGTGCAATGATTACACCATCATGGTAAGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CAA 90 bp | CCCAGCTGTTGGCCTGGGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGATCAACTTTTGAACTaGCCTCTGTACTATGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: PSCWPGKQYKFAFFILLSDQLLN*PLYYVS Trigger: AGAAACATAGTACAGAGGCAAGTTCAAAAGTTGATC...GGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCCCAGGCCAACAGCTGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CAA 90 bp | ATAACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTATCCCACAAAACCATGTCACTTTCATGACTaGTTTCTTTCCTACCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: ITRLEVNDQVKLHYPTKPCHFHD*FLSYPQ Trigger: CTGAGGGTAGGAAAGAAACAAGTCATGAAAGTGACA...TGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS-3UTR CAA 90 bp | GGAAGCAATACAAATTTGCTTTCTTTATTTTGCTGTCCGTGCAGAGGTAAACCAGTTAAGAATGGCACTTaGACTAAAGGAATTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: GSNTNLLSLFCCPCRGKPVKNGT*TKGIPT Trigger: TGTGGGAATTCCTTTAGTCAAAGTGCCATTCTTAAC...TGGTTTACCTCTGCACGGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS CCA 72 bp | GGGACAGACCTGAGACTTCAGAAGGCTCAGTATATCTaGGAGGTCTTTTTCAACATCCCAACTGGGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GTDLRLQKAQYI*EVFFNIPTGEG Trigger: TCCTTCCCCAGTTGGGATGTTGAAAAAGACCTCCCAGATATACTGAGCCTTCTGAAGTCTCAGGTCTGTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS GCA 72 bp | TTCTGTTTTATGCCCACAACCCTGGGAGTTTATGAGTaGAAAGTTCTGCAGCATAACACTGAGGTACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: FCFMPTTLGVYE*KVLQHNTEVQE Trigger: CTCCTGTACCTCAGTGTTATGCTGCAGAACTTTGCACTCATAAACTCCCAGGGTTGTGGGCATAAAACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS GCA 72 bp | CGTGTAGAAACCCTTCGCTCTTCATCTTCTGTTTTATaGCCACAACCCTGGGAGTTTATGAGTGCAAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: RVETLRSSSSVL*PQPWEFMSAKF Trigger: GAACTTTGCACTCATAAACTCCCAGGGTTGTGGGCATAAAACAGAAGATGAAGAGCGAAGGGTTTCTACACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS CCA 72 bp | TCAGTATATCTGGGAGGTCTTTTTCAACATCCCAACTaGGGAAGGACTTTGCTGACAGGTAGAACAGGTATG | + |
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Preference number: 6 (lower is better) Translates to: SVYLGGLFQHPN*GRTLLTGRTGM Trigger: CATACCTGTTCTACCTGTCAGCAAAGTCCTTCCCCAGTTGGGATGTTGAAAAAGACCTCCCAGATATACTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS TCA 72 bp | GTGCTTTTTCTGTACTTCTTAGTTTTGGGACAGACCTaGGACTTCAGAAGGCTCAGTATATCTGGGAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: VLFLYFLVLGQT*DFRRLSISGRS Trigger: AGACCTCCCAGATATACTGAGCCTTCTGAAGTCTCAGGTCTGTCCCAAAACTAAGAAGTACAGAAAAAGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS CCA 72 bp | AGGTTTTTGGGTGGTGAGCAAGTGTTTGCTTTTGACTaGAAAGGCTCTGACACTCTTCTGACTTGTCACTTT | + |
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Preference number: 6 (lower is better) Translates to: RFLGGEQVFAFD*KGSDTLLTCHF Trigger: AAAGTGACAAGTCAGAAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACACTTGCTCACCACCCAAAAACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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| CDS TCA 72 bp | TCCAAGGGTTTTCCTGTACTATTATGGTCTTGGTGCTaGTCAACTTTTGAACTTGCCTCTGTACTATGTTTC | + |
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Preference number: 6 (lower is better) Translates to: SKGFPVLLWSWC*STFELASVLCF Trigger: GAAACATAGTACAGAGGCAAGTTCAAAAGTTGATCAGCACCAAGACCATAATAGTACAGGAAAACCCTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032551.8 |
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