Pregenerated sensors for ZIC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061524Ensembl transcript IDs: ENSMUST00000075888.6
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATCAGATTCATAATTTTAATAAGACGATCCTAAGGTGCCCTCGATaGGTTTTGGGAGGGCGACGGTGGATAAGGGAACAGGGAATGGGA | + |
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Preference number: 1 (lower is better) Translates to: NQIHNFNKTILRCPR*VLGGRRWIREQGMG Trigger: TCCCATTCCCTGTTCCCTTATCCACCGTCGCCCTCCCAAAACCCATCGAGGGCACCTTAGGATCGTCTTATTAAAATTATGAATCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR CCA 90 bp | AAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAAGCATGTaGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTG | + |
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Preference number: 1 (lower is better) Translates to: KASAMYSLSKRLGSM*EGKWAREVWLDIFV Trigger: CACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR-3UTR CCA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTAAGACTAGGAAGCATGTaGGAAGGAAAGTGGGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: GERREGTQSGSLQMDKLLRLGSM*EGKWAR Trigger: CCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCT...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCAATAAGTTGGGAGGGCGACGGTaGATAAGGGAACAGGGAATG | + |
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Preference number: 2 (lower is better) Translates to: EGTQSGSLQMDKLLSTNKLGGRR*IREQGM Trigger: CATTCCCTGTTCCCTTATCCACCGTCGCCCTCCCAA...CTTATTGGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR-3UTR GCA 90 bp | GAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCAATAAGCATACAGAGAGATTTTaGTTTTCATGCCTAGATTGT | + |
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Preference number: 2 (lower is better) Translates to: EGTQSGSLQMDKLLSTNKHTERF*FSCLDC Trigger: ACAATCTAGGCATGAAAAGCAAAATCTCTCTGTATG...CTTATTGGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR-3UTR CAA 90 bp | GTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGTGCCCTCGATGGGTTTaGGGAGGGCGACGGTGGATA | + |
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Preference number: 3 (lower is better) Translates to: VRYVQFVKKTRKHVGRKVCPRWV*GGRRWI Trigger: TATCCACCGTCGCCCTCCCAAAACCCATCGAGGGCA...CACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGACAAACTGTACATAGCGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR CCA 72 bp | CATAATTTTAATAAGACGATCCTAAGGTGCCCTCGATaGGTTTTGGGAGGGCGACGGTGGATAAGGGAACAG | + |
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Preference number: 3 (lower is better) Translates to: HNFNKTILRCPR*VLGGRRWIREQ Trigger: CTGTTCCCTTATCCACCGTCGCCCTCCCAAAACCCATCGAGGGCACCTTAGGATCGTCTTATTAAAATTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR CCA 72 bp | GCTATGTACAGTTTGTCAAAAAGACTAGGAAGCATGTaGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGAT | + |
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Preference number: 3 (lower is better) Translates to: AMYSLSKRLGSM*EGKWAREVWLD Trigger: ATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGACAAACTGTACATAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR CCA 72 bp | TTGTCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTaGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: LSKRLGSMWEGK*AREVWLDIFVG Trigger: TCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGACAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR CCA 72 bp | GGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTaGCTCGATATTTTTGTGGGATTTACTTTCTTAATT | + |
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Preference number: 3 (lower is better) Translates to: GSMWEGKWAREV*LDIFVGFTFLI Trigger: AATTAAGAAAGTAAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| 3UTR-3UTR CAA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTACATACAGAGAGATTTaGCTTTTCATGCCTAGATTG | + |
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Preference number: 3 (lower is better) Translates to: MWEGKWAREVWLDIFVGFTYREI*LFMPRL Trigger: CAATCTAGGCATGAAAAGCAAAATCTCTCTGTATGT...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | TTTGGGAGGGCGACGGTGGATAAGGGAACAGGGAATGGGAGAAAGGCCTGGCCCGGTCGGTCCGCGGGCTaGCCACTTGGCGGTATTGCT | + |
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Preference number: 4 (lower is better) Translates to: FGRATVDKGTGNGRKAWPGRSAG*PLGGIA Trigger: AGCAATACCGCCAAGTGGCCAGCCCGCGGACCGACC...GGGCCAGGCCTTTCTCCCATTCCCTGTTCCCTTATCCACCGTCGCCCTCCCAAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | TTTGGGAGGGCGACGGTGGATAAGGGAACAGGGAATGGGAGAAAGGCCTGGCCCTGCTGCCGCCGCTGCTaGGGACAGGTTGGAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: FGRATVDKGTGNGRKAWPCCRRC*GQVGAA Trigger: AGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCA...GGGCCAGGCCTTTCTCCCATTCCCTGTTCCCTTATCCACCGTCGCCCTCCCAAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR TCA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCGAGTGCGCGTGGTaGAGGCCGCCGGCGCCGGGT | + |
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Preference number: 4 (lower is better) Translates to: GERREGTQSGSLQMDKLLSECAW*RPPAPG Trigger: ACCCGGCGCCGGCGGCCTTCACCACGCGCACTCGGA...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | TTTGGGAGGGCGACGGTGGATAAGGGAACAGGGAATGGGAGAAAGGCCTGGCCCGGGACAGGTTGGAGCTaGTTTGTGGCTCTGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FGRATVDKGTGNGRKAWPGTGWS*FVALRW Trigger: CCAGCGCAGAGCCACAAAGCAGCTCCAACCTGTCCC...GGGCCAGGCCTTTCTCCCATTCCCTGTTCCCTTATCCACCGTCGCCCTCCCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | AGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCGCTGCCGCGGCCGAGTaGTGGTGGTGGCGCGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: RREGTQSGSLQMDKLLSTAAAAE*WWWRAK Trigger: CTTCGCGCGCCACCACCACCACTCGGCCGCGGCAGC...GGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCGCGTGCGGCCCGTGCTaGTCCGGGAGGCCAGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: RREGTQSGSLQMDKLLSTACGPC*SGRPGK Trigger: TTTCCCTGGCCTCCCGGAGCAGCACGGGCCGCACGC...GGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCAGGTGGCGCGCGAAGCTaGCCACCCCGATGGCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: KGGRERNPGVYKWTNFYPGGARS*PPRWPG Trigger: TCCCGGCCATCGGGGTGGGCAGCTTCGCGCGCCACC...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTACCCCGAAGCCCCGGCTaGGGAACAGGAAGTCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: GERREGTQSGSLQMDKLLPRSPG*GTGSPG Trigger: CCCGGGACTTCCTGTTCCGCAGCCGGGGCTTCGGGG...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCCGCAGCCGCTGCTGCTaGTGCCGCCGCTGCTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SKRLGSMWEGKWAREVWLRSRCC*CRRCWG Trigger: TCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCG...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTACTCCGGAGCCGCTGCTaGCAGAACCCGCGCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: GERREGTQSGSLQMDKLLLRSRC*QNPRLG Trigger: ACCGAGGCGCGGGTTCTGGCAGCAGCGGCTCCGGAG...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCAGCGGCCGAGTGGTGGTaGTGGCGCGCGAAGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: KGGRERNPGVYKWTNFYPAAEWW*WRAKLP Trigger: GGGCAGCTTCGCGCGCCACCACCACCACTCGGCCGC...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCAAGCCGCTGCTGCTGCTaGCGCCGCTGCTGGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: KGGRERNPGVYKWTNFYPSRCCC*RRCWGQ Trigger: CTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCT...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | TCACCGTGGAAAAGGAAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAAGCTGCCCACCCCGATaGCCGGGAACTGCGGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: SPWKRKASAMYSLSKRLGSCPPR*PGTAAP Trigger: CGGGGCCGCAGTTCCCGGCCATCGGGGTGGGCAGCT...TCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTTCCTTTTCCACGGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR TCA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACGAAGCCGTTCTaGGCTGCCGCCAGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: GERREGTQSGSLQMDKLLSTKPF*AAARLS Trigger: GCTGAGCCTGGCGGCAGCTCAGAACGGCTTCGTGGA...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTCGCGGCCGCAGCGGCTaGAGCAGCCGAACCCGGGTA | + |
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Preference number: 4 (lower is better) Translates to: MWEGKWAREVWLDIFVGFRGRSG*SSRTRV Trigger: TACCCGGGTTCGGCTGCTGCAGCCGCTGCGGCCGCG...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCGCCACTTGGCGGTATTaGTCCGAGCGCCCGAACACC | + |
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Preference number: 4 (lower is better) Translates to: RREGTQSGSLQMDKLLSTATWRY*SERPNT Trigger: GGTGTTCGGGCGCTCGGAGCAATACCGCCAAGTGGC...GGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTCTCCGGTTGTCCCGCTaGCCCCGCCAGAGCTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: MWEGKWAREVWLDIFVGFLRLSR*PRQSCR Trigger: GCGGCAGCTCTGGCGGGGGCAGCGGGACAACCGGAG...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTGCCGCGGCCGAGTGGTaGTGGTGGCGCGCGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: MWEGKWAREVWLDIFVGFAAAEW*WWRAKL Trigger: CAGCTTCGCGCGCCACCACCACCACTCGGCCGCGGC...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTCCGATGGCCGGGAACTaGGGCCCCGCGTCCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: MWEGKWAREVWLDIFVGFPMAGN*GPASRS Trigger: GCTTCTGGACGCGGGGCCGCAGTTCCCGGCCATCGG...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCTGCTGCTGCCGCCGCTaGTGGGGACAGGTTGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: SKRLGSMWEGKWAREVWLCCCRR*WGQVGA Trigger: AGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCA...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCCCAACCCCGGGGGTGTaGACGACTCGTAGCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SKRLGSMWEGKWAREVWLPTPGV*TTRSQS Trigger: GCTCTGGCTACGAGTCGTCCACACCCCCGGGGTTGG...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCATTTGTGGCTCTGCGCTaGGGGACACCAACCCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: KGGRERNPGVYKWTNFYPFVALR*GTPTPG Trigger: CCCCGGGGTTGGTGTCCCCCAGCGCAGAGCCACAAA...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTCGCGGGCTGGCCACTTaGCGGTATTGCTCCGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: MWEGKWAREVWLDIFVGFRGLAT*RYCSER Trigger: GCGCTCGGAGCAATACCGCCAAGTGGCCAGCCCGCG...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | TCACCGTGGAAAAGGAAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAGAGGAGAGGCCGCTATaGCCTCCGGTTGTCCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: SPWKRKASAMYSLSKRLGEERPL*PPVVPL Trigger: CAGCGGGACAACCGGAGGCCATAGCGGCCTCTCCTC...TCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTTCCTTTTCCACGGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCAATAAGCCCATTGAGCACGTTCTaGGAGGCGTGCGGCCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: RERNPGVYKWTNFYPPISPLSTF*EACGPC Trigger: GCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGG...GCTTATTGGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCATGGTGGTGGTGGGCTaGGGCCGCTGCCATGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SKRLGSMWEGKWAREVWLMVVVG*GRCHVH Trigger: ATGAACATGGCAGCGGCCGCAGCCCACCACCACCAT...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | TCACCGTGGAAAAGGAAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAGCTGCTTTGTGGCTCTaGGCTGGGGGACACCAACCC | + |
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Preference number: 4 (lower is better) Translates to: SPWKRKASAMYSLSKRLGAALWL*AGGHQP Trigger: GGGTTGGTGTCCCCCAGCGCAGAGCCACAAAGCAGC...TCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTTCCTTTTCCACGGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | GAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCAATAAGACTCGTAGCCAGAGCTaGCAGCCGGGGAGGACTCGG | + |
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Preference number: 4 (lower is better) Translates to: EGTQSGSLQMDKLLSTNKTRSQS*QPGRTR Trigger: CCGAGTCCTCCCCGGCTGCCAGCTCTGGCTACGAGT...CTTATTGGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTACTGCTGGGGACAGGTTaGAGCTGCTTTGTGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: GERREGTQSGSLQMDKLLLLGTG*SCFVAL Trigger: CAGAGCCACAAAGCAGCTCCAACCTGTCCCCAGCAG...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTAAAAGAAGGTGGCCCTaGGCGTCCGAGTGCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: MWEGKWAREVWLDIFVGFKRRWP*ASECAW Trigger: CCACGCGCACTCGGACGCGCAGGGCCACCTTCTTTT...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | GAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCAATAAGGTTGGAGCTGCTTTGTaGCTCTGCGCTGGGGGACAC | + |
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Preference number: 4 (lower is better) Translates to: EGTQSGSLQMDKLLSTNKVGAAL*LCAGGH Trigger: GTGTCCCCCAGCGCAGAGCCACAAAGCAGCTCCAAC...CTTATTGGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR TCA 90 bp | TCACCGTGGAAAAGGAAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAGTGAACGCCGAACTCTaGCCAGGAGACAGTTCGTGT | + |
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Preference number: 4 (lower is better) Translates to: SPWKRKASAMYSLSKRLGVNAEL*PGDSSC Trigger: ACACGAACTGTCTCCTGGTCAGAGTTCGGCGTTCAC...TCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTTCCTTTTCCACGGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCTTGGGATTGCTTAGCTaGTCCGGGTCGATCCACTTG | + |
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Preference number: 4 (lower is better) Translates to: SKRLGSMWEGKWAREVWLLGLLS*SGSIHL Trigger: CAAGTGGATCGACCCGGAGCAGCTAAGCAATCCCAA...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCATCATGGACCTTCATGTaGTTCCGCAACGAGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: KGGRERNPGVYKWTNFYPSWTFM*FRNELG Trigger: TCCCAGCTCGTTGCGGAAGCACATGAAGGTCCATGA...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCAAGCTTTTCTTGGGATTaGTTAGCTGCTCCGGGTCGA | + |
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Preference number: 4 (lower is better) Translates to: KGGRERNPGVYKWTNFYPSFSWD*LAAPGR Trigger: TCGACCCGGAGCAGCTAAGCAATCCCAAGAAAAGCT...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR TCA 90 bp | TCACCGTGGAAAAGGAAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAGAGATAGGGCTTATCTaGGGTGTGGACATGCATGTG | + |
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Preference number: 4 (lower is better) Translates to: SPWKRKASAMYSLSKRLGEIGLI*GVDMHV Trigger: CACATGCATGTCCACACCTCAGATAAGCCCTATCTC...TCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTTCCTTTTCCACGGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR GCA 90 bp | GTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGTGTGGACATGCATGTaGTTCTTCCTGTCGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VRYVQFVKKTRKHVGRKVVWTCM*FFLSLL Trigger: CAGCAGCGACAGGAAGAAGCACATGCATGTCCACAC...CACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGACAAACTGTACATAGCGGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CCA 90 bp | GTCCGCTATGTACAGTTTGTCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGTGTTGCAGCTTTTCTTaGGATTGCTTAGCTGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: VRYVQFVKKTRKHVGRKVCCSFS*DCLAAP Trigger: CGGAGCAGCTAAGCAATCCCAAGAAAAGCTGCAACA...CACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGACAAACTGTACATAGCGGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 90 bp | GGCGCCCATGTGCGCCGCGGCCGAGTCCACGAAGCCGTTCTGAGCTaGCGCCAGGCTCAGCTCGCGGTCCTGCATCTCGGCCGCCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: GAHVRRGRVHEAVLS*RQAQLAVLHLGRRS Trigger: GCTGCGGCGGCCGAGATGCAGGACCGCGAGCTGAGCCTGGCGGCAGCTCAGAACGGCTTCGTGGACTCGGCCGCGGCGCACATGGGCGCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS TCA 90 bp | AGGCCAGGGAAAAGAAGGTGGCCCTGCGCGTCCGAGTGCGCGTGGTaGAGGCCGCCGGCGCCGGGTCCGAAGAGCCCGTGCTGCCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: RPGKRRWPCASECAW*RPPAPGPKSPCCPP Trigger: AGGCGGGCAGCACGGGCTCTTCGGACCCGGCGCCGGCGGCCTTCACCACGCGCACTCGGACGCGCAGGGCCACCTTCTTTTCCCTGGCCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 90 bp | GCCTCGGTGCACTGCGGACACCGCGGCCGCTGCTGCCGCAGCCGCTaGTGCTGCTGCCGCCGCTGCTGGGGACAGGTTGGAGCTGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: ASVHCGHRGRCCRSR*CCCRRCWGQVGAAL Trigger: CAAAGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGCGGCCGCGGTGTCCGCAGTGCACCGAGGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CCA 90 bp | CGCGGCCGCTGCTGCCGCAGCCGCTGCTGCTGCTGCCGCCGCTGCTaGGGACAGGTTGGAGCTGCTTTGTGGCTCTGCGCTGGGGGACAC | + |
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Preference number: 5 (lower is better) Translates to: RGRCCRSRCCCCRRC*GQVGAALWLCAGGH Trigger: GTGTCCCCCAGCGCAGAGCCACAAAGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGCGGCCGCG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS TCA 90 bp | TTGAAGGCGCCCATGTGCGCCGCGGCCGAGTCCACGAAGCCGTTCTaGGCTGCCGCCAGGCTCAGCTCGCGGTCCTGCATCTCGGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: LKAPMCAAAESTKPF*AAARLSSRSCISAA Trigger: GGCGGCCGAGATGCAGGACCGCGAGCTGAGCCTGGCGGCAGCTCAGAACGGCTTCGTGGACTCGGCCGCGGCGCACATGGGCGCCTTCAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS TCA 90 bp | AGCGCCCGAACACCTCGCCCGGCAGCCCTAGGCGCATTTGCCCATTaGGCACGTTCTGCGAGGCGTGCGGCCCGTGCTGCTCCGGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SARTPRPAALGAFAH*ARSARRAARAAPGG Trigger: GCCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGTGTTCGGGCGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CCA 90 bp | ACTGGTTGTGGAGCTGCGCCGCCGAGTAGGGGTCGGTCCGCGGGCTaGCCACTTGGCGGTATTGCTCCGAGCGCCCGAACACCTCGCCCG | + |
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Preference number: 5 (lower is better) Translates to: TGCGAAPPSRGRSAG*PLGGIAPSARTPRP Trigger: CGGGCGAGGTGTTCGGGCGCTCGGAGCAATACCGCCAAGTGGCCAGCCCGCGGACCGACCCCTACTCGGCGGCGCAGCTCCACAACCAGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 90 bp | TGCTCCGAGCGCCCGAACACCTCGCCCGGCAGCCCTAGGCGCATTTaGCCATTGAGCACGTTCTGCGAGGCGTGCGGCCCGTGCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: CSERPNTSPGSPRRI*PLSTFCEACGPCCS Trigger: GGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGTGTTCGGGCGCTCGGAGCA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 90 bp | CGCATTTGCCCATTGAGCACGTTCTGCGAGGCGTGCGGCCCGTGCTaGTCCGGGAGGCCAGGGAAAAGAAGGTGGCCCTGCGCGTCCGAG | + |
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Preference number: 5 (lower is better) Translates to: RICPLSTFCEACGPC*SGRPGKRRWPCASE Trigger: CTCGGACGCGCAGGGCCACCTTCTTTTCCCTGGCCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 90 bp | AGGCGCATTTGCCCATTGAGCACGTTCTGCGAGGCGTGCGGCCCGTaGTGCTCCGGGAGGCCAGGGAAAAGAAGGTGGCCCTGCGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: RRICPLSTFCEACGP*CSGRPGKRRWPCAS Trigger: GGACGCGCAGGGCCACCTTCTTTTCCCTGGCCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 90 bp | ACCTCGCCCGGCAGCCCTAGGCGCATTTGCCCATTGAGCACGTTCTaGGAGGCGTGCGGCCCGTGCTGCTCCGGGAGGCCAGGGAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: TSPGSPRRICPLSTF*EACGPCCSGRPGKR Trigger: TCTTTTCCCTGGCCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | AGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCCCGCGGGCTGGCCACTaGGCGGTATTGCTCCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: RREGTQSGSLQMDKLLSTPRAGH*AVLLRA Trigger: CGCTCGGAGCAATACCGCCAAGTGGCCAGCCCGCGG...GGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGCCCCGGGGTTGAGCTaGAAGGCGCCCATGTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SKRLGSMWEGKWAREVWLAPGLS*KAPMCA Trigger: GGCGCACATGGGCGCCTTCAAGCTCAACCCCGGGGC...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTAGGCCACTTGGCGGTATaGCTCCGAGCGCCCGAACAC | + |
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Preference number: 5 (lower is better) Translates to: GERREGTQSGSLQMDKLLGHLAV*LRAPEH Trigger: GTGTTCGGGCGCTCGGAGCAATACCGCCAAGTGGCC...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | AGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCCAGGTTGGAGCTGCTTaGTGGCTCTGCGCTGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: RREGTQSGSLQMDKLLSTQVGAA*WLCAGG Trigger: TCCCCCAGCGCAGAGCCACAAAGCAGCTCCAACCTG...GGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | AAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCAATAGGGCCGTACTGGTaGTGGAGCTGCGCCGCCGAG | + |
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Preference number: 5 (lower is better) Translates to: KGGRERNPGVYKWTNFYPIGPYW*WSCAAE Trigger: CTCGGCGGCGCAGCTCCACAACCAGTACGGCCCTAT...TGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | TCAAAAAGACTAGGAAGCATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGCTGCTGGGGACAGGTaGGAGCTGCTTTGTGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: SKRLGSMWEGKWAREVWLAAGDR*ELLCGS Trigger: AGAGCCACAAAGCAGCTCCAACCTGTCCCCAGCAGC...GAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACATGCTTCCTAGTCTTTTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | GGAGAAAGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTACAGATGAGCTCTTGCTaGATGCACTGCTGCCGCATG | + |
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Preference number: 5 (lower is better) Translates to: GERREGTQSGSLQMDKLLQMSSC*MHCCRM Trigger: CATGCGGCAGCAGTGCATCAAGCAAGAGCTCATCTG...TAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCTTTCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | AGGCGGGAGGGAACGCAATCCGGGAGTTTACAAATGGACAAACTTCTATCCACCTTGTTGCAGCTTTTCTaGGGATTGCTTAGCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RREGTQSGSLQMDKLLSTLLQLF*GLLSCS Trigger: GGAGCAGCTAAGCAATCCCAAGAAAAGCTGCAACAA...GGTGGATAGAAGTTTGTCCATTTGTAAACTCCCGGATTGCGTTCCCTCCCGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | TCACCGTGGAAAAGGAAGGCGTCCGCTATGTACAGTTTGTCAAAAAGACTAGGACACACGTACCATTCATaGAAGTTGGAGGAGAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: SPWKRKASAMYSLSKRLGHTYHS*KLEERP Trigger: CGGCCTCTCCTCCAACTTCAATGAATGGTACGTGTG...TCCTAGTCTTTTTGACAAACTGTACATAGCGGACGCCTTCCTTTTCCACGGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS-3UTR CAA 90 bp | ATGTGGGAAGGAAAGTGGGCTAGGGAAGTTTGGCTCGATATTTTTGTGGGATTTTACCATTCATTGAAGTaGGAGGAGAGGCCGCTATGG | + |
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Preference number: 5 (lower is better) Translates to: MWEGKWAREVWLDIFVGFYHSLK*EERPLW Trigger: CCATAGCGGCCTCTCCTCCAACTTCAATGAATGGTA...AAATCCCACAAAAATATCGAGCCAAACTTCCCTAGCCCACTTTCCTTCCCACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | CGCTGCCGGCCGCCGAGCCCCCTCCGGAGCCGCTGCTaGCAGAACCCGCGCCTCGGTGCACTGCGGACACCG | + |
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Preference number: 6 (lower is better) Translates to: RCRPPSPLRSRC*QNPRLGALRTP Trigger: CGGTGTCCGCAGTGCACCGAGGCGCGGGTTCTGGCAGCAGCGGCTCCGGAGGGGGCTCGGCGGCCGGCAGCG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | GGACACCGCGGCCGCTGCTGCCGCAGCCGCTGCTGCTaGTGCCGCCGCTGCTGGGGACAGGTTGGAGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GHRGRCCRSRCC*CRRCWGQVGAA Trigger: AGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGCGGCCGCGGTGTCC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | TGCGGACACCGCGGCCGCTGCTGCCGCAGCCGCTGCTaGTGCTGCCGCCGCTGCTGGGGACAGGTTGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: CGHRGRCCRSRC*CCRRCWGQVGA Trigger: AGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGCGGCCGCGGTGTCCGCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | CACTGCGGACACCGCGGCCGCTGCTGCCGCAGCCGCTaGTGCTGCTGCCGCCGCTGCTGGGGACAGGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: HCGHRGRCCRSR*CCCRRCWGQVG Trigger: TCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGCGGCCGCGGTGTCCGCAGTG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | CACCGCGGCCGCTGCTGCCGCAGCCGCTGCTGCTGCTaGCGCCGCTGCTGGGGACAGGTTGGAGCTGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: HRGRCCRSRCCC*RRCWGQVGAAL Trigger: CAAAGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGCGGCCGCGGTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS TCA 72 bp | AAAAGAAGGTGGCCCTGCGCGTCCGAGTGCGCGTGGTaGAGGCCGCCGGCGCCGGGTCCGAAGAGCCCGTGC | + |
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Preference number: 6 (lower is better) Translates to: KRRWPCASECAW*RPPAPGPKSPC Trigger: GCACGGGCTCTTCGGACCCGGCGCCGGCGGCCTTCACCACGCGCACTCGGACGCGCAGGGCCACCTTCTTTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CCA 72 bp | GGAGCTGCGCCGCCGAGTAGGGGTCGGTCCGCGGGCTaGCCACTTGGCGGTATTGCTCCGAGCGCCCGAACA | + |
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Preference number: 6 (lower is better) Translates to: GAAPPSRGRSAG*PLGGIAPSART Trigger: TGTTCGGGCGCTCGGAGCAATACCGCCAAGTGGCCAGCCCGCGGACCGACCCCTACTCGGCGGCGCAGCTCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CAA 90 bp | GAGCGCCCGAACACCTCGCCCGGCAGCCCTAGGCGCATTTGCCCATaGAGCACGTTCTGCGAGGCGTGCGGCCCGTGCTGCTCCGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ERPNTSPGSPRRICP*STFCEACGPCCSGR Trigger: CCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGTGTTCGGGCGCTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS TCA 72 bp | CCCATGTGCGCCGCGGCCGAGTCCACGAAGCCGTTCTaGGCTGCCGCCAGGCTCAGCTCGCGGTCCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: PMCAAAESTKPF*AAARLSSRSCI Trigger: GATGCAGGACCGCGAGCTGAGCCTGGCGGCAGCTCAGAACGGCTTCGTGGACTCGGCCGCGGCGCACATGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | CGCCCGAACACCTCGCCCGGCAGCCCTAGGCGCATTTaGCCATTGAGCACGTTCTGCGAGGCGTGCGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: RPNTSPGSPRRI*PLSTFCEACGP Trigger: CGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGTGTTCGGGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CCA 72 bp | TGCTGCCGCAGCCGCTGCTGCTGCTGCCGCCGCTGCTaGGGACAGGTTGGAGCTGCTTTGTGGCTCTGCGCT | + |
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Preference number: 6 (lower is better) Translates to: CCRSRCCCCRRC*GQVGAALWLCA Trigger: AGCGCAGAGCCACAAAGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS TCA 72 bp | ACACCTCGCCCGGCAGCCCTAGGCGCATTTGCCCATTaGGCACGTTCTGCGAGGCGTGCGGCCCGTGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: TPRPAALGAFAH*ARSARRAARAA Trigger: AGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGTGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | CCATTGAGCACGTTCTGCGAGGCGTGCGGCCCGTGCTaGTCCGGGAGGCCAGGGAAAAGAAGGTGGCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: PLSTFCEACGPC*SGRPGKRRWPC Trigger: GCAGGGCCACCTTCTTTTCCCTGGCCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | TGCCCATTGAGCACGTTCTGCGAGGCGTGCGGCCCGTaGTGCTCCGGGAGGCCAGGGAAAAGAAGGTGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: CPLSTFCEACGP*CSGRPGKRRWP Trigger: GGGCCACCTTCTTTTCCCTGGCCTCCCGGAGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CAA 72 bp | AACACCTCGCCCGGCAGCCCTAGGCGCATTTGCCCATaGAGCACGTTCTGCGAGGCGTGCGGCCCGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: NTSPGSPRRICP*STFCEACGPCC Trigger: GCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGTGTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CAA 90 bp | GGCCGCAGCGGCTGCAGCAGCCGAACCCGGGTAAGCACCCGGACCTaGCGACGTGAACGCCGAACTCTGACCAGGAGACAGTTCGTGTGC | + |
|
Preference number: 6 (lower is better) Translates to: GRSGCSSRTRVSTRT*RRERRTLTRRQFVC Trigger: GCACACGAACTGTCTCCTGGTCAGAGTTCGGCGTTCACGTCGCAAGGTCCGGGTGCTTACCCGGGTTCGGCTGCTGCAGCCGCTGCGGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS CAA 72 bp | GGCTGCAGCAGCCGAACCCGGGTAAGCACCCGGACCTaGCGACGTGAACGCCGAACTCTGACCAGGAGACAG | + |
|
Preference number: 6 (lower is better) Translates to: GCSSRTRVSTRT*RRERRTLTRRQ Trigger: CTGTCTCCTGGTCAGAGTTCGGCGTTCACGTCGCAAGGTCCGGGTGCTTACCCGGGTTCGGCTGCTGCAGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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| CDS GCA 72 bp | GGCACCAGGGTGGTGGTGGTGATGGTGGTGGTGGGCTaGGGCCGCTGCCATGTTCATCCCCATGTTCATATT | + |
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Preference number: 6 (lower is better) Translates to: GTRVVVVMVVVG*GRCHVHPHVHI Trigger: AATATGAACATGGGGATGAACATGGCAGCGGCCGCAGCCCACCACCACCATCACCACCACCACCCTGGTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075888.6 |
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