RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFYVE9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034557

Ensembl transcript IDs: ENSMUST00000042185.8, ENSMUST00000106657.8, ENSMUST00000106658.8

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGAAGACAAGCACTGACGAACCAAAGGGGCAAAGTGCTAGTGTGTaGGCGTGTGCGTCCGTGTGTGTGTGTGTATGCGTCCCTGTGAGC +
Preference number: 1 (lower is better)
Translates to: GKTSTDEPKGQSASV*ACASVCVCVCVPVS
Trigger: GCTCACAGGGACGCATACACACACACACACGGACGCACACGCTCACACACTAGCACTTTGCCCCTTTGGTTCGTCAGTGCTTGTCTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR TCA 90 bp TCTCTGAGCTCCAGGCCAGCCAGTCAGTATCACATATATCTTCGGTaGACCAGATCTTTGTTTCCTGTACTCCAGTTAAAGGGCTGCCTG +
Preference number: 1 (lower is better)
Translates to: SLSSRPASQYHIYLR*TRSLFPVLQLKGCL
Trigger: CAGGCAGCCCTTTAACTGGAGTACAGGAAACAAAGATCTGGTTCACCGAAGATATATGTGATACTGACTGGCTGGCCTGGAGCTCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR TCA 90 bp AGGTTCTGGGCAGGTATGAGGTTAGAGCCTCCAGACACTGTGACTTaGCTTAAGGATGAGGGGCTGTACTGTATGCACCTTAATCTGAAA +
Preference number: 1 (lower is better)
Translates to: RFWAGMRLEPPDTVT*LKDEGLYCMHLNLK
Trigger: TTTCAGATTAAGGTGCATACAGTACAGCCCCTCATCCTTAAGTCAAGTCACAGTGTCTGGAGGCTCTAACCTCATACCTGCCCAGAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR CCA 90 bp AGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTTACCTTCCCTaGCTAACAGACCAGAAACCCCTTTGGTTTGATTCAGTTAGTAAT +
Preference number: 1 (lower is better)
Translates to: SFSIQMPWFILSYLP*LTDQKPLWFDSVSN
Trigger: ATTACTAACTGAATCAAACCAAAGGGGTTTCTGGTCTGTTAGCCAGGGAAGGTAACTCAGTATAAACCAGGGCATTTGGATAGAGAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATGCCCTGGGTGCCCATTaGCAGCTGTCACTCAGCTTC +
Preference number: 2 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDALGAH*QLSLSF
Trigger: GAAGCTGAGTGACAGCTGGCAATGGGCACCCAGGGC...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCTGCTGCAACAGGTCTaGACAGAAACAATGGAGTCC +
Preference number: 2 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQLLQQV*TETMES
Trigger: GGACTCCATTGTTTCTGTTCAGACCTGTTGCAGCAG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCCAGACACTGTGACTTaGCTTAAGGATGAGGGGCTG +
Preference number: 2 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDPDTVT*LKDEGL
Trigger: CAGCCCCTCATCCTTAAGTCAAGTCACAGTGTCTGG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAGGATATGACTGCTGCTaGAACAGGTCTGAACAGAAA +
Preference number: 2 (lower is better)
Translates to: MSFATVSERQMDIKCFWPGYDCC*NRSEQK
Trigger: TTTCTGTTCAGACCTGTTGCAGCAGCAGTCATATCC...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATGTGTGTGTGTGTGTATaGGTCCCTGTGAGCGTGTGT +
Preference number: 2 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDVCVCV*VPVSVC
Trigger: ACACACGCTCACAGGGACGCATACACACACACACAC...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGAACATGACAAACAGCTaGGGGTGCAACCAGGATGAT +
Preference number: 2 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQNMTNS*GCNQDD
Trigger: ATCATCCTGGTTGCACCCCCAGCTGTTTGTCATGTT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCAAATGATTTGGATATaGCTGCTGCTGCAACAGGTC +
Preference number: 2 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQQMIWI*LLLQQV
Trigger: GACCTGTTGCAGCAGCAGTCATATCCAAATCATTTG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCCAGACACTGTGACTTaGCTTAAGGATGAGGGGCTG +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFPDTVT*LKDEGL
Trigger: CAGCCCCTCATCCTTAAGTCAAGTCACAGTGTCTGG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGACCGAAGGGGAATTTTaGGGAGCAAGATCTTTGCAT +
Preference number: 2 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQTEGEF*GARSLH
Trigger: ATGCAAAGATCTTGCTCCTCAAAATTCCCCTTCGGT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACAGAAGGGAGTTAGCTaGAAAGATAGCATATCTGTT +
Preference number: 2 (lower is better)
Translates to: MSFATVSERQMDIKCFWPQKGVS*KDSISV
Trigger: AACAGATATGCTATCTTTGCAGCTAACTCCCTTCTG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCGTGTGTGTGTGTGTATaGGTCCCTGTGAGCGTGTGT +
Preference number: 2 (lower is better)
Translates to: NKGQRKEGLICFESIKSSVCVCV*VPVSVC
Trigger: ACACACGCTCACAGGGACGCATACACACACACACAC...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGGACCAGAAACCCCTTTaGTTTGATTCAGTTAGTAAT +
Preference number: 2 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEDQKPL*FDSVSN
Trigger: ATTACTAACTGAATCAAACCAAAGGGGTTTCTGGTC...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGCCTCCAGACACTGTaGCTTGACTTAAGGATGAGG +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFSLQTL*LDLRMR
Trigger: CCTCATCCTTAAGTCAAGTCACAGTGTCTGGAGGCT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAGCCTCCAGACACTGTaGCTTGACTTAAGGATGAGG +
Preference number: 2 (lower is better)
Translates to: NKGQRKEGLICFESIKSSSLQTL*LDLRMR
Trigger: CCTCATCCTTAAGTCAAGTCACAGTGTCTGGAGGCT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATGGATATGACTGCTGCTaGAACAGGTCTGAACAGAAA +
Preference number: 2 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDGYDCC*NRSEQK
Trigger: TTTCTGTTCAGACCTGTTGCAGCAGCAGTCATATCC...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCACAAACAGCTGGGGGTaGAACCAGGATGATCAGCAT +
Preference number: 2 (lower is better)
Translates to: NKGQRKEGLICFESIKSSTNSWG*NQDDQH
Trigger: ATGCTGATCATCCTGGTTGCACCCCCAGCTGTTTGT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTACAAACAGCTGGGGGTaGAACCAGGATGATCAGCAT +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFTNSWG*NQDDQH
Trigger: ATGCTGATCATCCTGGTTGCACCCCCAGCTGTTTGT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATCTATCCAAATGCCCTaGTTTATACTGAGTTACCTT +
Preference number: 2 (lower is better)
Translates to: MSFATVSERQMDIKCFWPSIQMP*FILSYL
Trigger: AAGGTAACTCAGTATAAACCAGGGCATTTGGATAGA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTATAGCATATCTGTTGTaGAGTAAGAAGCTGCCCGGG +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFIAYLL*SKKLPG
Trigger: CCCGGGCAGCTTCTTACTGCACAACAGATATGCTAT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAACATGACAAACAGCTaGGGGTGCAACCAGGATGAT +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFNMTNS*GCNQDD
Trigger: ATCATCCTGGTTGCACCCCCAGCTGTTTGTCATGTT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCAAATGATTTGGATATaGCTGCTGCTGCAACAGGTC +
Preference number: 2 (lower is better)
Translates to: NKGQRKEGLICFESIKSSQMIWI*LLLQQV
Trigger: GACCTGTTGCAGCAGCAGTCATATCCAAATCATTTG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCTTTGCCACTGTCTCTaGAAGGCAGATGGATATCAA +
Preference number: 2 (lower is better)
Translates to: NKGQRKEGLICFESIKSSLCHCL*KADGYQ
Trigger: TTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTTTGGATATGACTGCTaGTGCAACAGGTCTGAACAG +
Preference number: 2 (lower is better)
Translates to: NKGQRKEGLICFESIKSSFGYDC*CNRSEQ
Trigger: CTGTTCAGACCTGTTGCAGCAGCAGTCATATCCAAA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGGACCAGAAACCCCTTTaGTTTGATTCAGTTAGTAAT +
Preference number: 2 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQDQKPL*FDSVSN
Trigger: ATTACTAACTGAATCAAACCAAAGGGGTTTCTGGTC...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTTGGAAAGTTCTCTGTTaGAGAAAGGTTCCCAAAGGT +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFWKVLC*RKVPKG
Trigger: ACCTTTGGGAACCTTTCTTCAACAGAGAACTTTCCA...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGGATATCAAGTGTTTCTaGCCAATAATCCAAACTCAA +
Preference number: 2 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQDIKCF*PIIQTQ
Trigger: TTGAGTTTGGATTATTGGCCAGAAACACTTGATATC...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTATAGCGGTCTTTTTATaGCAGTTCTGTACAGGAAGT +
Preference number: 2 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFIAVFL*QFCTGS
Trigger: ACTTCCTGTACAGAACTGGCATAAAAAGACCGCTAT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATGCCCTGGGTGCCCATaGCCAGCTGTCACTCAGCTT +
Preference number: 3 (lower is better)
Translates to: MSFATVSERQMDIKCFWPCPGCP*PAVTQL
Trigger: AAGCTGAGTGACAGCTGGCAATGGGCACCCAGGGCA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR TCA 72 bp GCAGGTATGAGGTTAGAGCCTCCAGACACTGTGACTTaGCTTAAGGATGAGGGGCTGTACTGTATGCACCTT +
Preference number: 3 (lower is better)
Translates to: AGMRLEPPDTVT*LKDEGLYCMHL
Trigger: AAGGTGCATACAGTACAGCCCCTCATCCTTAAGTCAAGTCACAGTGTCTGGAGGCTCTAACCTCATACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR CCA 72 bp TGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTaGTTTATACTGAGTTACCTTCCCTGGCTAACAGAC +
Preference number: 3 (lower is better)
Translates to: CQLSLSFSIQMP*FILSYLPWLTD
Trigger: GTCTGTTAGCCAGGGAAGGTAACTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR TCA 72 bp TCCAGGCCAGCCAGTCAGTATCACATATATCTTCGGTaGACCAGATCTTTGTTTCCTGTACTCCAGTTAAAG +
Preference number: 3 (lower is better)
Translates to: SRPASQYHIYLR*TRSLFPVLQLK
Trigger: CTTTAACTGGAGTACAGGAAACAAAGATCTGGTTCACCGAAGATATATGTGATACTGACTGGCTGGCCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR GCA 72 bp GGTGCAACCAGGATGATCAGCATAGCGGTCTTTTTATaGCAGTTCTGTACAGGAAGTACAAAAGTGACGATT +
Preference number: 3 (lower is better)
Translates to: GATRMISIAVFL*QFCTGSTKVTI
Trigger: AATCGTCACTTTTGTACTTCCTGTACAGAACTGGCATAAAAAGACCGCTATGCTGATCATCCTGGTTGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR CCA 72 bp ATCCAAATGCCCTGGTTTATACTGAGTTACCTTCCCTaGCTAACAGACCAGAAACCCCTTTGGTTTGATTCA +
Preference number: 3 (lower is better)
Translates to: IQMPWFILSYLP*LTDQKPLWFDS
Trigger: TGAATCAAACCAAAGGGGTTTCTGGTCTGTTAGCCAGGGAAGGTAACTCAGTATAAACCAGGGCATTTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR GCA 72 bp ATAAACACGAATCTAAACATGACAAACAGCTGGGGGTaGAACCAGGATGATCAGCATAGCGGTCTTTTTATG +
Preference number: 3 (lower is better)
Translates to: INTNLNMTNSWG*NQDDQHSGLFM
Trigger: CATAAAAAGACCGCTATGCTGATCATCCTGGTTGCACCCCCAGCTGTTTGTCATGTTTAGATTCGTGTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR GCA 72 bp GAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGTaGAGGCAAGAAAACATCAGTGGTGCTAAACCGAAG +
Preference number: 3 (lower is better)
Translates to: ESHFTAVIVKEQ*RQENISGAKPK
Trigger: CTTCGGTTTAGCACCACTGATGTTTTCTTGCCTGCACTGCTCTTTCACTATGACAGCTGTAAAATGACTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAACCGAAGGGGAATTTaGAGGAGCAAGATCTTTGCA +
Preference number: 3 (lower is better)
Translates to: NKGQRKEGLICFESIKSSNRRGI*RSKIFA
Trigger: TGCAAAGATCTTGCTCCTCAAAATTCCCCTTCGGTT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
3UTR CCA 72 bp ACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTaGCCAATAATCCAAACTCAAATGAGGTATTTTCTA +
Preference number: 3 (lower is better)
Translates to: TVSERQMDIKCF*PIIQTQMRYFL
Trigger: TAGAAAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAAGAGCTCAGGGCTCCTaGGGCCTGAGCTTGCTGCAA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPRAQGS*GLSLLQ
Trigger: TTGCAGCAAGCTCAGGCCTCAGGAGCCCTGAGCTCT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR CCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGCAGGTACCATCACAGTaGGAGGTGGAGAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEQVPSQ*EVESSG
Trigger: CCCTGAGCTCTCCACCTCCCACTGTGATGGTACCTG...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR GCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGATCTCCCGCAGTGCCTaGCTCAAGGAGTCCATGTTC +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEISRSA*LKESMF
Trigger: GAACATGGACTCCTTGAGGCAGGCACTGCGGGAGAT...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCGACAGGGCCTTCACTaGGCTGGCAGGCTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDRQGLH*AGRLLH
Trigger: ATGGAGGAGCCTGCCAGCTCAGTGAAGGCCCTGTCG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGCCACACGCTCTGCAGTaGTGCCTCCTTTTGGTGAAT +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEPHALQ*CLLLVN
Trigger: ATTCACCAAAAGGAGGCATCACTGCAGAGCGTGTGG...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAATCTCCCGCAGTGCCTaGCTCAAGGAGTCCATGTTC +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPISRSA*LKESMF
Trigger: GAACATGGACTCCTTGAGGCAGGCACTGCGGGAGAT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTCCCTAGGTCTGTCCTaGAAGAGCTGTTCATGCCAG +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTESLGLS*KSCSCQ
Trigger: CTGGCATGAACAGCTCTTCCAGGACAGACCTAGGGA...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATGGAGCCTGGGAATCTaGTACCCATACTGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPWSLGI*YPYWCH
Trigger: GTGGCACCAGTATGGGTACCAGATTCCCAGGCTCCA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAAAGAATGTCCCAGGCTaGCCACAACATTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPKNVPG*PQHSLP
Trigger: TGGCAGGGAATGTTGTGGGCAGCCTGGGACATTCTT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGCAGTCCACTCCCTTCTaGATTCTCGTTTCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEQSTPF*ILVSSL
Trigger: CAGAGAGGAAACGAGAATGCAGAAGGGAGTGGACTG...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATCATCGTCCACCCACTaGATGTGGATCTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPSSSTH*MWICSW
Trigger: CCAGGAACAGATCCACATCCAGTGGGTGGACGATGA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGCCAGGAAACTTTGACTaGAGAAAGAATGTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEPGNFD*RKNVPG
Trigger: GCCTGGGACATTCTTTCTTCAGTCAAAGTTTCCTGG...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCGACAGGGCCTTCACTaGGCTGGCAGGCTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSRQGLH*AGRLLH
Trigger: ATGGAGGAGCCTGCCAGCTCAGTGAAGGCCCTGTCG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCTTTGTAAGGGGAGCTaGGCCAGCCAGAGAGAAGAC +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQLCKGS*ASQRED
Trigger: GTCTTCTCTCTGGCTGGCTCAGCTCCCCTTACAAAG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCTCTGCTCTCTGGGCTaGGGCACTTCTGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFLCSLG*GTSVPG
Trigger: CCCTGGAACAGAAGTGCCTCAGCCCAGAGAGCAGAG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCTTTGTAAGGGGAGCTaGGCCAGCCAGAGAGAAGAC +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDLCKGS*ASQRED
Trigger: GTCTTCTCTCTGGCTGGCTCAGCTCCCCTTACAAAG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAACCGTCCTTCAATTGTaGAGGGGAAGAGATACTGGT +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPTVLQL*RGRDTG
Trigger: ACCAGTATCTCTTCCCCTTCACAATTGAAGGACGGT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCCACACGCTCTGCAGTaGTGCCTCCTTTTGGTGAAT +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQPHALQ*CLLLVN
Trigger: ATTCACCAAAAGGAGGCATCACTGCAGAGCGTGTGG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCTCTGCTCTCTGGGCTaGGGCACATTCATCAGCACT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDLCSLG*GTFIST
Trigger: AGTGCTGATGAATGTGCCTCAGCCCAGAGAGCAGAG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACCATGTACAGCAGTTTaGATTTTAGGCTGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPPCTAV*ILGCSR
Trigger: CCTGCTGCAGCCTAAAATGCAAACTGCTGTACATGG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGCCATCCTCCAGTTGCTaGATGACTGAAATCTGTGAT +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEPSSSC*MTEICD
Trigger: ATCACAGATTTCAGTCATGCAGCAACTGGAGGATGG...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACCACCATCCTCCAGTTaGTGCATGACTGAAATCTGT +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPPPSSS*CMTEIC
Trigger: ACAGATTTCAGTCATGCAGCAACTGGAGGATGGTGG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCAGTCTGCTGTGATCTaGAGGGTCACTCAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQQSAVI*RVTQAV
Trigger: AACTGCCTGAGTGACCCTGCAGATCACAGCAGACTG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGATCTTGGGGGAAGATTaGCCAAGTACTGATGGGATT +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEILGED*PSTDGI
Trigger: AATCCCATCAGTACTTGGGCAATCTTCCCCCAAGAT...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCTCTCCTCTGCTCTCTaGGCTGAGGCACTTCTGTTC +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDLSSAL*AEALLF
Trigger: GAACAGAAGTGCCTCAGCCCAGAGAGCAGAGGAGAG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR CCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGCTCAGGCAGTTATGGTaGTCATCGTTTTCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTELRQLW*SSFSRK
Trigger: TTTCCTGGAAAACGATGACCACCATAACTGCCTGAG...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATCACTCAGGCAGTTATaGTGGTCATCGTTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPSLRQL*WSSFSR
Trigger: CCTGGAAAACGATGACCACCATAACTGCCTGAGTGA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGGAAGACTTTCAGCTGTaGTCCTGTCTCAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEEDFQL*SCLRNC
Trigger: ACAGTTTCTGAGACAGGACCACAGCTGAAAGTCTTC...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAGCAGGTTTGCTATCTTaGGGGAAGATTGCCCAAGTA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPAGLLS*GKIAQV
Trigger: TACTTGGGCAATCTTCCCCCAAGATAGCAAACCTGC...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACAAGGCATGGTCTACTaGAGATCTCAGCCTCATAAG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPQGMVY*RSQPHK
Trigger: CTTATGAGGCTGAGATCTCCAGTAGACCATGCCTTG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAATGCAGTTTGGAGCCTaGGAATCTGGTACCCATACT +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPMQFGA*ESGTHT
Trigger: AGTATGGGTACCAGATTCCCAGGCTCCAAACTGCAT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATTCATCAGCACTGAGTaGCAGATTACACACACTCTG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPFISTE*QITHTL
Trigger: CAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGACAGGACTTCCAACCTaGGTAATGCTCCCAGAGAAC +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQTGLPT*VMLPEN
Trigger: GTTCTCTGGGAGCATTACTCAGGTTGGAAGTCCTGT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGGTTTGCATTTTAGGCTaGAGCAGGAAGCACAGAAAA +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEVCILG*SRKHRK
Trigger: TTTTCTGTGCTTCCTGCTGCAGCCTAAAATGCAAAC...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCAGTCTGCTGTGATCTaGAGGGTCACTCAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDQSAVI*RVTQAV
Trigger: AACTGCCTGAGTGACCCTGCAGATCACAGCAGACTG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCAGTCCACTCCCTTCTaGATTCTCGTTTCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQQSTPF*ILVSSL
Trigger: CAGAGAGGAAACGAGAATGCAGAAGGGAGTGGACTG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTATGTGGATCTGTTCCTaGGGGTCCTCTGCATCCGCC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFMWICS*GSSASA
Trigger: GGCGGATGCAGAGGACCCCCAGGAACAGATCCACAT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATTCATCGTCCACCCACTaGATGTGGATCTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDSSSTH*MWICSW
Trigger: CCAGGAACAGATCCACATCCAGTGGGTGGACGATGA...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATACAGGACTTCCAACCTaGGTAATGCTCCCAGAGAAC +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDTGLPT*VMLPEN
Trigger: GTTCTCTGGGAGCATTACTCAGGTTGGAAGTCCTGT...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCCTCCAGTTGCTGCATaGCTGAAATCTGTGATGGTT +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQPPVAA*LKSVMV
Trigger: AACCATCACAGATTTCAGTCATGCAGCAACTGGAGG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCCAGGAAACTTTGACTaGAGAAAGAATGTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQPGNFD*RKNVPG
Trigger: GCCTGGGACATTCTTTCTTCAGTCAAAGTTTCCTGG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACAGGAGTATCCGGCTTaGGATTCAAAGATAAATCAG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPQEYPA*DSKINQ
Trigger: CTGATTTATCTTTGAATCTCAAGCCGGATACTCCTG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATCCTGCAAATCGCTTTaGAATGTCCTTTTATCGCAG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPSCKSL*NVLLSQ
Trigger: CTGCGATAAAAGGACATTGCAAAGCGATTTGCAGGA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTCATTACATTCCCAGTaGTGTTTAAAAGCAGTCCAC +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTESLHSQ*CLKAVH
Trigger: GTGGACTGCTTTTAAACAGCACTGGGAATGTAATGA...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATTAAGATTAGAAGGTTaGTTGGGTCTTGCACCACCA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPLRLEG*LGLAPP
Trigger: TGGTGGTGCAAGACCCAAGCAACCTTCTAATCTTAA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGGAGCTTCACACTTCATaGAGTTTGGAGCCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQELHTS*SLEPGN
Trigger: ATTCCCAGGCTCCAAACTGCATGAAGTGTGAAGCTC...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCCTTCCCACACGCTCTaGAGTGATGCCTCCTTTTGG +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSPSHTL*SDASFW
Trigger: CCAAAAGGAGGCATCACTGCAGAGCGTGTGGGAAGG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGAACATTCTTCTCGTCTaGCAGACAAGTGAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQNILLV*QTSEAS
Trigger: GGAAGCCTCACTTGTCTGCCAGACGAGAAGAATGTT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTGGAGCCTGGGAATCTaGTACCCATACTGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSWSLGI*YPYWCH
Trigger: GTGGCACCAGTATGGGTACCAGATTCCCAGGCTCCA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGTTCATCAGCACTGAGTaGCAGATTACACACACTCTG +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQFISTE*QITHTL
Trigger: CAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAA...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGTTAGGGCTCTGGCTTaGGGCACTCATCATGTTCTC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFVRALA*GTHHVL
Trigger: GAGAACATGATGAGTGCCTCAAGCCAGAGCCCTAAC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR TCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTTAAAAGACAATGGGTaGGAAGAGGGATCTAAAATC +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTELKDNG*EEGSKI
Trigger: GATTTTAGATCCCTCTTCTCACCCATTGTCTTTTAA...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCGTCTGGCAGACAAGTaGGGCTTCCACATTTCTCCT +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFRLADK*GFHISP
Trigger: AGGAGAAATGTGGAAGCCTCACTTGTCTGCCAGACG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATACCGTCCTTCAATTGTaGAGGGGAAGAGATACTGGT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDTVLQL*RGRDTG
Trigger: ACCAGTATCTCTTCCCCTTCACAATTGAAGGACGGT...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATTAGTGTCCTCAGGTTaGTTACTCTGTAAAGCCATT +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPLVSSG*LLCKAI
Trigger: AATGGCTTTACAGAGTAATCAACCTGAGGACACTAA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCCATGTACAGCAGTTTaGATTTTAGGCTGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDPCTAV*ILGCSR
Trigger: CCTGCTGCAGCCTAAAATGCAAACTGCTGTACATGG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAAGAATGTCCCAGGCTaGCCACAACATTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSKNVPG*PQHSLP
Trigger: TGGCAGGGAATGTTGTGGGCAGCCTGGGACATTCTT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAAATAGATTGCAGGTTTaGTATCTTGGGGGAAGATTG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPNRLQV*YLGGRL
Trigger: CAATCTTCCCCCAAGATAGCAAACCTGCAATCTATT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACACAGAATCCCTCTCTaGTTTTGGTTTATTCAAAGC +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPHRIPL*FWFIQS
Trigger: GCTTTGAATAAACCAAAACCAGAGAGGGATTCTGTG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCAAGGCATGGTCTACTaGAGATCTCAGCCTCATAAG +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDQGMVY*RSQPHK
Trigger: CTTATGAGGCTGAGATCTCCAGTAGACCATGCCTTG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAGACCCAAGGCAGTCTaGAGACTGTTCGCAATTGTC +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSRPKAV*RLFAIV
Trigger: GACAATTGCGAACAGTCTTCAGACTGCCTTGGGTCT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGACCCAAGGCAGTCTaGAGACTGTTCGCAATTGTC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFRPKAV*RLFAIV
Trigger: GACAATTGCGAACAGTCTTCAGACTGCCTTGGGTCT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATATCTTGGGGGAAGATTaGCCAAGTACTGATGGGATT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDILGED*PSTDGI
Trigger: AATCCCATCAGTACTTGGGCAATCTTCCCCCAAGAT...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATTCTGACACTGAACAGTaGACAGGGGTAAAGTCGATA +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDSDTEQ*TGVKSI
Trigger: TATCGACTTTACCCCTGTCCACTGTTCAGTGTCAGA...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACCAGTACATGTTCATTaGATTTGTTCATGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPPVHVH*ICSWLS
Trigger: TGAAAGCCATGAACAAATCCAATGAACATGTACTGG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCTCAGGCAGTTATGGTaGTCATCGTTTTCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDLRQLW*SSFSRK
Trigger: TTTCCTGGAAAACGATGACCACCATAACTGCCTGAG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATTTCATCAATCCACATaGTGTCAGTCTCTGGATTTA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPFHQST*CQSLDL
Trigger: TAAATCCAGAGACTGACACCATGTGGATTGATGAAA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAAGAAAGATCCTCATCTaGCATATAATTTCCTTGCTG +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPRKILI*HIISLL
Trigger: CAGCAAGGAAATTATATGCCAGATGAGGATCTTTCT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGTGGGAAAAGGAGTTaGAGATCCCTAGGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFSGKRS*RSLGLS
Trigger: GGACAGACCTAGGGATCTCCAACTCCTTTTCCCACT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAGTGGGAAAAGGAGTTaGAGATCCCTAGGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSSGKRS*RSLGLS
Trigger: GGACAGACCTAGGGATCTCCAACTCCTTTTCCCACT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTTACTGAATCTTCTTTaGAGGGTAATGTCTTTGGAA +
Preference number: 4 (lower is better)
Translates to: PLPAVTQLLYPNALVYTELLNLL*RVMSLE
Trigger: TTCCAAAGACATTACCCTCCAAAGAAGATTCAGTAA...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCTGCCCAGGAAACTTTaGCTGAAGAAAGAATGTCCC +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSLPRKL*LKKECP
Trigger: GGGACATTCTTTCTTCAGTCAAAGTTTCCTGGGCAG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCAGGAGTATCCGGCTTaGGATTCAAAGATAAATCAG +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDQEYPA*DSKINQ
Trigger: CTGATTTATCTTTGAATCTCAAGCCGGATACTCCTG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCCACCATCCTCCAGTTaGTGCATGACTGAAATCTGT +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSPPSSS*CMTEIC
Trigger: ACAGATTTCAGTCATGCAGCAACTGGAGGATGGTGG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCAGGTTGTAAGCCTCTaGTTGGAAGTAATTCTCCAT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDQVVSL*LEVILH
Trigger: ATGGAGAATTACTTCCAAGCAGAGGCTTACAACCTG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGAGAATTTGCTGCTGGTaGATCATTAACAGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQRICCW*IINSGE
Trigger: TTCTCCACTGTTAATGATGCACCAGCAGCAAATTCT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGAGCTTCACACTTCATaGAGTTTGGAGCCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFELHTS*SLEPGN
Trigger: ATTCCCAGGCTCCAAACTGCATGAAGTGTGAAGCTC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTCACTCAGGCAGTTATaGTGGTCATCGTTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSSLRQL*WSSFSR
Trigger: CCTGGAAAACGATGACCACCATAACTGCCTGAGTGA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAACATTCTTCTCGTCTaGCAGACAAGTGAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFNILLV*QTSEAS
Trigger: GGAAGCCTCACTTGTCTGCCAGACGAGAAGAATGTT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCACAGAATCCCTCTCTaGTTTTGGTTTATTCAAAGC +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQHRIPL*FWFIQS
Trigger: GCTTTGAATAAACCAAAACCAGAGAGGGATTCTGTG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGCTCTCCACTTGAGTaGGAAAAGGAGTTGGAGATC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFSSPLE*EKELEI
Trigger: GATCTCCAACTCCTTTTCCCACTCAAGTGGAGAGCT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCGCAGGTTTGCTATCTTaGGGGAAGATTGCCCAAGTA +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSAGLLS*GKIAQV
Trigger: TACTTGGGCAATCTTCCCCCAAGATAGCAAACCTGC...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAAGGTCATTTTGTAAATaGTCTGATAATGGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: MSFATVSERQMDIKCFWPRSFCK*SDNGFG
Trigger: TCCAAAGCCATTATCAGACCATTTACAAAATGACCT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGCATTCATCAGCACTaGGTGACAGATTACACACAC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFSIHQH*VTDYTH
Trigger: GTGTGTGTAATCTGTCACTCAGTGCTGATGAATGCT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR TCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGTTCCAATTAGTCATCTaGGAGTCATTACCTTCATCT +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQFQLVI*ESLPSS
Trigger: AGATGAAGGTAATGACTCTCAGATGACTAATTGGAA...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATTTAGTGTCCTCAGGTTaGTTACTCTGTAAAGCCATT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDLVSSG*LLCKAI
Trigger: AATGGCTTTACAGAGTAATCAACCTGAGGACACTAA...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCACATTCATCAGCACTaGGTGACAGATTACACACAC +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSHIHQH*VTDYTH
Trigger: GTGTGTGTAATCTGTCACTCAGTGCTGATGAATGTG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCTTTTATCGCAGTTATaGATGACAGCTACAACCAGA +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDLLSQL*MTATTR
Trigger: TCTGGTTGTAGCTGTCATGCATAACTGCGATAAAAG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTCTGACACTGAACAGTaGACAGGGGTAAAGTCGATA +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSSDTEQ*TGVKSI
Trigger: TATCGACTTTACCCCTGTCCACTGTTCAGTGTCAGA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCGAAGACTTTCAGCTGTaGTCCTGTCTCAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSEDFQL*SCLRNC
Trigger: ACAGTTTCTGAGACAGGACCACAGCTGAAAGTCTTC...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGTTTCATCAATCCACATaGTGTCAGTCTCTGGATTTA +
Preference number: 4 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQFHQST*CQSLDL
Trigger: TAAATCCAGAGACTGACACCATGTGGATTGATGAAA...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTTATCGCAGTTATGCATaGCAGCTACAACCAGAACAT +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFYRSYA*QLQPEH
Trigger: ATGTTCTGGTTGTAGCTGTCATGCATAACTGCGATA...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTATCGCAGTTATGCATaGCAGCTACAACCAGAACAT +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSYRSYA*QLQPEH
Trigger: ATGTTCTGGTTGTAGCTGTCATGCATAACTGCGATA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAGATTGCCCAAGTACTaGTGGGATTTGACTACAGAA +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSRLPKY*WDLTTE
Trigger: TTCTGTAGTCAAATCCCATCAGTACTTGGGCAATCT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGTTTGCATTTTAGGCTaGAGCAGGAAGCACAGAAAA +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFVCILG*SRKHRK
Trigger: TTTTCTGTGCTTCCTGCTGCAGCCTAAAATGCAAAC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCAGGTTGTAAGCCTCTaGTTGGAAGTAATTCTCCAT +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFQVVSL*LEVILH
Trigger: ATGGAGAATTACTTCCAAGCAGAGGCTTACAACCTG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTCCTGCAAATCGCTTTaGAATGTCCTTTTATCGCAG +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSSCKSL*NVLLSQ
Trigger: CTGCGATAAAAGGACATTGCAAAGCGATTTGCAGGA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTTTAAGATTAGAAGGTTaGTTGGGTCTTGCACCACCA +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFLRLEG*LGLAPP
Trigger: TGGTGGTGCAAGACCCAAGCAACCTTCTAATCTTAA...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTTTAACAAGAGTCGTATaGGAAACACTTTGGCCCAAG +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFLTRVV*ETLWPK
Trigger: CTTGGGCCAAAGTGTTTCCCATACGACTCTTGTTAA...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATATCCCTCTCTGGTTTTaGTTTATTCAAAGCATCCAT +
Preference number: 4 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDIPLWF*FIQSIH
Trigger: ATGGATGCTTTGAATAAACCAAAACCAGAGAGGGAT...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCTTTTATCGCAGTTATaGATGACAGCTACAACCAGA +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSLLSQL*MTATTR
Trigger: TCTGGTTGTAGCTGTCATGCATAACTGCGATAAAAG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR GCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTCATTACATTCCCAGTaGTGTTTAAAAGCAGTCCAC +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSSLHSQ*CLKAVH
Trigger: GTGGACTGCTTTTAAACAGCACTGGGAATGTAATGA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCAAACATTTCTCATCTaGCAGACACTGCAGAAGAAT +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFQTFLI*QTLQKN
Trigger: ATTCTTCTGCAGTGTCTGCCAGATGAGAAATGTTTG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCAAACATTTCTCATCTaGCAGACACTGCAGAAGAAT +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSQTFLI*QTLQKN
Trigger: ATTCTTCTGCAGTGTCTGCCAGATGAGAAATGTTTG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTTTAAAAGACAATGGGTaGGAAGAGGGATCTAAAATC +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFLKDNG*EEGSKI
Trigger: GATTTTAGATCCCTCTTCTCACCCATTGTCTTTTAA...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR TCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTTCCAATTAGTCATCTaGGAGTCATTACCTTCATCT +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSFQLVI*ESLPSS
Trigger: AGATGAAGGTAATGACTCTCAGATGACTAATTGGAA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCCAGTACATGTTCATTaGATTTGTTCATGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFPVHVH*ICSWLS
Trigger: TGAAAGCCATGAACAAATCCAATGAACATGTACTGG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTATCCCTCTCTGGTTTTaGTTTATTCAAAGCATCCAT +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFIPLWF*FIQSIH
Trigger: ATGGATGCTTTGAATAAACCAAAACCAGAGAGGGAT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGAAAGATCCTCATCTaGCATATAATTTCCTTGCTG +
Preference number: 4 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFRKILI*HIISLL
Trigger: CAGCAAGGAAATTATATGCCAGATGAGGATCTTTCT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CCA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCAGGTCATTTTGTAAATaGTCTGATAATGGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: NKGQRKEGLICFESIKSSRSFCK*SDNGFG
Trigger: TCCAAAGCCATTATCAGACCATTTACAAAATGACCT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS GCA 90 bp CTCTGGCTTCCTTTCTGTCCATGTACAGCAGTTTGCATTTTAGGCTaGAGCAGGAAGCACAGAAAACCTTCCCACACGCTCTGCAGTGAT +
Preference number: 5 (lower is better)
Translates to: LWLPFCPCTAVCILG*SRKHRKPSHTLCSD
Trigger: ATCACTGCAGAGCGTGTGGGAAGGTTTTCTGTGCTTCCTGCTGCAGCCTAAAATGCAAACTGCTGTACATGGACAGAAAGGAAGCCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 90 bp AGTAGAACAGTATTCAGCAGGATTGTTAGGGTTAGGGCTCTGGCTTaGGGCACTCATCATGTTCTCCCAGGCTTGAGCATTCATCAGCAC +
Preference number: 5 (lower is better)
Translates to: SRTVFSRIVRVRALA*GTHHVLPGLSIHQH
Trigger: GTGCTGATGAATGCTCAAGCCTGGGAGAACATGATGAGTGCCTCAAGCCAGAGCCCTAACCCTAACAATCCTGCTGAATACTGTTCTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042185.8
ENSMUST00000106657.8
CDS-3UTR CAA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTGCAGGTTTGCTATCTaGGGGGAAGATTGCCCAAGT +
Preference number: 5 (lower is better)
Translates to: PLPAVTQLLYPNALVYTECRFAI*GEDCPS
Trigger: ACTTGGGCAATCTTCCCCCAAGATAGCAAACCTGCA...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS GCA 90 bp GAAGGTTGCTTGGGTCTTGCACCACCAAAAGGAACACTAATAGATTaGAGGTTTGCTATCTTGGGGGAAGATTGCCCAAGTACTGATGGG +
Preference number: 5 (lower is better)
Translates to: EGCLGLAPPKGTLID*RFAILGEDCPSTDG
Trigger: CCCATCAGTACTTGGGCAATCTTCCCCCAAGATAGCAAACCTGCAATCTATTAGTGTTCCTTTTGGTGGTGCAAGACCCAAGCAACCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CCA 90 bp GCTGAGGCACATTCATCAGCACTGAGTGACAGATTACACACACTCTaGCTTCCTTTCTGTCCATGTACAGCAGTTTGCATTTTAGGCTGC +
Preference number: 5 (lower is better)
Translates to: AEAHSSALSDRLHTL*LPFCPCTAVCILGC
Trigger: GCAGCCTAAAATGCAAACTGCTGTACATGGACAGAAAGGAAGCCAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAATGTGCCTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCACAGTATTCAGCAGGATaGTTAGGGTTAGGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: MSFATVSERQMDIKCFWPQYSAG*LGLGLW
Trigger: CCAGAGCCCTAACCCTAACAATCCTGCTGAATACTG...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106657.8
CDS-3UTR CAA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGCTGGTGGCTACAGGCTaGACTGGGTCATGTGACACA +
Preference number: 5 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQLVATG*TGSCDT
Trigger: TGTGTCACATGACCCAGTCAAGCCTGTAGCCACCAG...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGGGACTCACCACACCTTaGTTAACTGTCTTGTCATCG +
Preference number: 5 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEGLTTP*LTVLSS
Trigger: CGATGACAAGACAGTTAACAAAGGTGTGGTGAGTCC...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 90 bp ACTGTTCGCAATTGTCCCTTCCAGATAAAGCAGGAGTATCCGGCTTaGGATTCAAAGATAAATCAGATGGGAGGGAGTCTTCAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: TVRNCPFQIKQEYPA*DSKINQMGGSLQLS
Trigger: GGACAGCTGAAGACTCCCTCCCATCTGATTTATCTTTGAATCTCAAGCCGGATACTCCTGCTTTATCTGGAAGGGACAATTGCGAACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CCA 90 bp AGGCTTGAGCATTCATCAGCACTGAGTGACAGATTACACACACTCTaGCTTCCTTTCTGTCCATGTACAGCAGTTTGCATTTTAGGCTGC +
Preference number: 5 (lower is better)
Translates to: RLEHSSALSDRLHTL*LPFCPCTAVCILGC
Trigger: GCAGCCTAAAATGCAAACTGCTGTACATGGACAGAAAGGAAGCCAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAATGCTCAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042185.8
ENSMUST00000106657.8
CDS CCA 90 bp GCTCTGTTTTTATTAAGAGCTCTCCACTTGAGTGGGAAAAGGAGTTaGAGATCCCTAGGTCTGTCCTGGAAGAGCTGTTCATGCCAGAAA +
Preference number: 5 (lower is better)
Translates to: ALFLLRALHLSGKRS*RSLGLSWKSCSCQK
Trigger: TTTCTGGCATGAACAGCTCTTCCAGGACAGACCTAGGGATCTCCAACTCCTTTTCCCACTCAAGTGGAGAGCTCTTAATAAAAACAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATTAGCACAGGGATCTTaGTCCTCCTTTGTAAGGGGA +
Preference number: 5 (lower is better)
Translates to: MSFATVSERQMDIKCFWPLAQGS*SSFVRG
Trigger: TCCCCTTACAAAGGAGGACAAAGATCCCTGTGCTAA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGAGATTAGAAGGTTGCTaGGGTCTTGCACCACCAAAA +
Preference number: 5 (lower is better)
Translates to: PLPAVTQLLYPNALVYTERLEGC*GLAPPK
Trigger: TTTTGGTGGTGCAAGACCCAAGCAACCTTCTAATCT...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 90 bp ACCTCACCTAGGGTGGTAAATGGCTTTCTTGCAGAAATTCCAAACTaGCTAGCTCGGAGATCATTATCTGGACTATCTGGAGCTAGTGCA +
Preference number: 5 (lower is better)
Translates to: TSPRVVNGFLAEIPN*LARRSLSGLSGASA
Trigger: TGCACTAGCTCCAGATAGTCCAGATAATGATCTCCGAGCTAGTCAGTTTGGAATTTCTGCAAGAAAGCCATTTACCACCCTAGGTGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGAAGTATCAGCCTCTGTaGGAAGAGGACTGGTGGCTA +
Preference number: 5 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQKYQPL*EEDWWL
Trigger: TAGCCACCAGTCCTCTTCCAACAGAGGCTGATACTT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAACTGATGGCCTGGGTTaGATAGTTTCCATCATCGTT +
Preference number: 5 (lower is better)
Translates to: MSFATVSERQMDIKCFWPTDGLG*IVSIIV
Trigger: AACGATGATGGAAACTATCAAACCCAGGCCATCAGT...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCATGGCATATAATTTCCTaGCTGTTTAATGGCAGGCCC +
Preference number: 5 (lower is better)
Translates to: MSFATVSERQMDIKCFWPWHIIS*LFNGRP
Trigger: GGGCCTGCCATTAAACAGCAAGGAAATTATATGCCA...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATGAGTGGGAAAAGGAGTaGGAGATCCCTAGGTCTGTC +
Preference number: 5 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDEWEKE*EIPRSV
Trigger: GACAGACCTAGGGATCTCCAACTCCTTTTCCCACTC...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGTCCATGTACAGCAGTTaGCATTTTAGGCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQSMYSS*HFRLQQ
Trigger: CTGCTGCAGCCTAAAATGCAAACTGCTGTACATGGA...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTCTGGTGGCTACAGGCTaGACTGGGTCATGTGACACA +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFLVATG*TGSCDT
Trigger: TGTGTCACATGACCCAGTCAAGCCTGTAGCCACCAG...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATAAGTATCAGCCTCTGTaGGAAGAGGACTGGTGGCTA +
Preference number: 5 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDKYQPL*EEDWWL
Trigger: TAGCCACCAGTCCTCTTCCAACAGAGGCTGATACTT...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAGCCAGTACATGTTCATaGGATTTGTTCATGGCTTTC +
Preference number: 5 (lower is better)
Translates to: MSFATVSERQMDIKCFWPASTCS*DLFMAF
Trigger: GAAAGCCATGAACAAATCCAATGAACATGTACTGGC...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATCCTTTGTTAACTGTCTaGTCATCGTCCACCCACTGG +
Preference number: 5 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDPLLTV*SSSTHW
Trigger: CCAGTGGGTGGACGATGACAAGACAGTTAACAAAGG...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATAAGGTTGCTTGGGTCTaGCACCACCAAAAGGAACAC +
Preference number: 5 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDKVAWV*HHQKEH
Trigger: GTGTTCCTTTTGGTGGTGCAAGACCCAAGCAACCTT...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATTCCATGTACAGCAGTTaGCATTTTAGGCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDSMYSS*HFRLQQ
Trigger: CTGCTGCAGCCTAAAATGCAAACTGCTGTACATGGA...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGAGTGGGAAAAGGAGTaGGAGATCCCTAGGTCTGTC +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFEWEKE*EIPRSV
Trigger: GACAGACCTAGGGATCTCCAACTCCTTTTCCCACTC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp CCATTGCCAGCTGTCACTCAGCTTCTCTATCCAAATGCCCTGGTTTATACTGAGTGGAGGGTAATGTCTTaGGAACAAAAGATACAATTG +
Preference number: 5 (lower is better)
Translates to: PLPAVTQLLYPNALVYTEWRVMS*EQKIQL
Trigger: CAATTGTATCTTTTGTTCCAAAGACATTACCCTCCA...CTCAGTATAAACCAGGGCATTTGGATAGAGAAGCTGAGTGACAGCTGGCAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATGAGCTTTGCCACTGTCTCTGAAAGGCAGATGGATATCAAGTGTTTCTGGCCAGTTACTGAATCTTCTTaGGAGGGTAATGTCTTTGGA +
Preference number: 5 (lower is better)
Translates to: MSFATVSERQMDIKCFWPVTESS*EGNVFG
Trigger: TCCAAAGACATTACCCTCCAAAGAAGATTCAGTAAC...TGGCCAGAAACACTTGATATCCATCTGCCTTTCAGAGACAGTGGCAAAGCTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AGGGCCATGCTGAAACTAGAAAGTCATTTTACAGCTGTCATAGTGAAAGAGCAGAGTTCTCCCCTAGCTTaGCTTTCCCAAGAACATCAT +
Preference number: 5 (lower is better)
Translates to: RAMLKLESHFTAVIVKEQSSPLA*LSQEHH
Trigger: ATGATGTTCTTGGGAAAGCAAAGCTAGGGGAGAACT...CTGCTCTTTCACTATGACAGCTGTAAAATGACTTTCTAGTTTCAGCATGGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS GCA 90 bp TTACAATCCTGCAAATCGCTTTGCAATGTCCTTTTATCGCAGTTATaGATGACAGCTACAACCAGAACATTCTTCTCGTCTGGCAGACAA +
Preference number: 5 (lower is better)
Translates to: LQSCKSLCNVLLSQL*MTATTRTFFSSGRQ
Trigger: TTGTCTGCCAGACGAGAAGAATGTTCTGGTTGTAGCTGTCATGCATAACTGCGATAAAAGGACATTGCAAAGCGATTTGCAGGATTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CCA 90 bp GATCATTATCTGGACTATCTGGAGCTAGTGCAAGGCATGGTCTACTaGAGATCTCAGCCTCATAAGTTTCTAAATGTTCCCCATTTGTAT +
Preference number: 5 (lower is better)
Translates to: DHYLDYLELVQGMVY*RSQPHKFLNVPHLY
Trigger: ATACAAATGGGGAACATTTAGAAACTTATGAGGCTGAGATCTCCAGTAGACCATGCCTTGCACTAGCTCCAGATAGTCCAGATAATGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCCTTTGTTAACTGTCTaGTCATCGTCCACCCACTGG +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSPLLTV*SSSTHW
Trigger: CCAGTGGGTGGACGATGACAAGACAGTTAACAAAGG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTGCAGGTTTGCTATCTaGGGGGAAGATTGCCCAAGT +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSCRFAI*GEDCPS
Trigger: ACTTGGGCAATCTTCCCCCAAGATAGCAAACCTGCA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAAGGTTGCTTGGGTCTaGCACCACCAAAAGGAACAC +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFKVAWV*HHQKEH
Trigger: GTGTTCCTTTTGGTGGTGCAAGACCCAAGCAACCTT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp ATTCCATGCCACAAAGAGATAAAGACAAGCTTAAAGCTATGTGCAGCGTCTGATTTTAAGATTAGAAGGTaGCTTGGGTCTTGCACCACC +
Preference number: 5 (lower is better)
Translates to: IPCHKEIKTSLKLCAASDFKIRR*LGSCTT
Trigger: GGTGGTGCAAGACCCAAGCAACCTTCTAATCTTAAA...ATCAGACGCTGCACATAGCTTTAAGCTTGTCTTTATCTCTTTGTGGCATGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCGGACTCACCACACCTTaGTTAACTGTCTTGTCATCG +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSGLTTP*LTVLSS
Trigger: CGATGACAAGACAGTTAACAAAGGTGTGGTGAGTCC...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTTAGCACAGGGATCTTaGTCCTCCTTTGTAAGGGGA +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSLAQGS*SSFVRG
Trigger: TCCCCTTACAAAGGAGGACAAAGATCCCTGTGCTAA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTTGGCATATAATTTCCTaGCTGTTTAATGGCAGGCCC +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFWHIIS*LFNGRP
Trigger: GGGCCTGCCATTAAACAGCAAGGAAATTATATGCCA...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGATTAGAAGGTTGCTaGGGTCTTGCACCACCAAAA +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFRLEGC*GLAPPK
Trigger: TTTTGGTGGTGCAAGACCCAAGCAACCTTCTAATCT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTTTAAGATTAGAAGGTaGCTTGGGTCTTGCACCACC +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSFKIRR*LGSCTT
Trigger: GGTGGTGCAAGACCCAAGCAACCTTCTAATCTTAAA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTAGTTCTCCCCTAGCTTaGCTTTCCCAAGAACATCAT +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFSSPLA*LSQEHH
Trigger: ATGATGTTCTTGGGAAAGCAAAGCTAGGGGAGAACT...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGCCAGTACATGTTCATaGGATTTGTTCATGGCTTTC +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFASTCS*DLFMAF
Trigger: GAAAGCCATGAACAAATCCAATGAACATGTACTGGC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCATCCTGCAAATCGCTTaGCAATGTCCTTTTATCGCA +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSILQIA*QCPFIA
Trigger: TGCGATAAAAGGACATTGCAAAGCGATTTGCAGGAT...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGCAGGAGTATCCGGCTaGAGATTCAAAGATAAATCA +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFAGVSG*RFKDKS
Trigger: TGATTTATCTTTGAATCTCAAGCCGGATACTCCTGC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCGCAGGAGTATCCGGCTaGAGATTCAAAGATAAATCA +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSAGVSG*RFKDKS
Trigger: TGATTTATCTTTGAATCTCAAGCCGGATACTCCTGC...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 90 bp GTAGGTTCATTCACACTGGCTAATGCAGGGTTAAAAGACAATGGGTaGGAAGAGGGATCTAAAATCTTATTCCACTTTGTATCCAATAAA +
Preference number: 5 (lower is better)
Translates to: VGSFTLANAGLKDNG*EEGSKILFHFVSNK
Trigger: TTTATTGGATACAAAGTGGAATAAGATTTTAGATCCCTCTTCTCACCCATTGTCTTTTAACCCTGCATTAGCCAGTGTGAATGAACCTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp GCAGATGGATATCAAGTGTTTCTGGCCAATAATCCAAACTCAAATGAGGTATTTGTTACTGAATCTTCTTaGGAGGGTAATGTCTTTGGA +
Preference number: 5 (lower is better)
Translates to: ADGYQVFLANNPNSNEVFVTESS*EGNVFG
Trigger: TCCAAAGACATTACCCTCCAAAGAAGATTCAGTAAC...AAATACCTCATTTGAGTTTGGATTATTGGCCAGAAACACTTGATATCCATCTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 90 bp CTATCACTCATCTCATTTAGCTTCGTTAATTTCCAATTAGTCATCTaGGAGTCATTACCTTCATCTTCATCAGCTCTAGTTTCACTAGAC +
Preference number: 5 (lower is better)
Translates to: LSLISFSFVNFQLVI*ESLPSSSSALVSLD
Trigger: GTCTAGTGAAACTAGAGCTGATGAAGATGAAGGTAATGACTCTCAGATGACTAATTGGAAATTAACGAAGCTAAATGAGATGAGTGATAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCTGGAGGGTAATGTCTTaGGAACAAAAGATACAATTG +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSWRVMS*EQKIQL
Trigger: CAATTGTATCTTTTGTTCCAAAGACATTACCCTCCA...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS-3UTR CAA 90 bp AATAAAGGACAAAGGAAGGAGGGGCTTATTTGTTTTGAGTCTATTAAATCCAGCCTAAATGTTCCCCATTaGTATCAGTTACAGAGATGT +
Preference number: 5 (lower is better)
Translates to: NKGQRKEGLICFESIKSSLNVPH*YQLQRC
Trigger: ACATCTCTGTAACTGATACAAATGGGGAACATTTAG...GCTGGATTTAATAGACTCAAAACAAATAAGCCCCTCCTTCCTTTGTCCTTTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS GCA 72 bp GAAGAAAGAATGTCCCAGGCTGCCCACAACATTCCCTaGCAGGGCGTCCCGGTAAAGCTGTACAAAGTGATT +
Preference number: 6 (lower is better)
Translates to: EERMSQAAHNIP*QGVPVKLYKVI
Trigger: AATCACTTTGTACAGCTTTACCGGGACGCCCTGGCAGGGAATGTTGTGGGCAGCCTGGGACATTCTTTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042185.8
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 90 bp GTCTCTGGATTTAGACTACAGTCCTGTCCGTTAGCACAGGGATCTTaGTCCTCCTTTGTAAGGGGAGCTGAGCCAGCCAGAGAGAAGACT +
Preference number: 6 (lower is better)
Translates to: VSGFRLQSCPLAQGS*SSFVRGAEPAREKT
Trigger: AGTCTTCTCTCTGGCTGGCTCAGCTCCCCTTACAAAGGAGGACAAAGATCCCTGTGCTAACGGACAGGACTGTAGTCTAAATCCAGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp CCTCTGCTCTCTGGGCTGAGGCACATTCATCAGCACTaGGTGACAGATTACACACACTCTGGCTTCCTTTCT +
Preference number: 6 (lower is better)
Translates to: PLLSGLRHIHQH*VTDYTHSGFLS
Trigger: AGAAAGGAAGCCAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAATGTGCCTCAGCCCAGAGAGCAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106658.8
CDS CCA 72 bp GGTGAATGTAAACCGAGCTTCACACTTCATGCAGTTTaGAGCCTGGGAATCTGGTACCCATACTGGTGCCAC +
Preference number: 6 (lower is better)
Translates to: GECKPSFTLHAV*SLGIWYPYWCH
Trigger: GTGGCACCAGTATGGGTACCAGATTCCCAGGCTCCAAACTGCATGAAGTGTGAAGCTCGGTTTACATTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp GTATTCAGCAGGATTGTTAGGGTTAGGGCTCTGGCTTaGGGCACTCATCATGTTCTCCCAGGCTTGAGCATT +
Preference number: 6 (lower is better)
Translates to: VFSRIVRVRALA*GTHHVLPGLSI
Trigger: AATGCTCAAGCCTGGGAGAACATGATGAGTGCCTCAAGCCAGAGCCCTAACCCTAACAATCCTGCTGAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042185.8
ENSMUST00000106657.8
CDS TCA 72 bp CAGGAAGCACAGAAAACCTTCCCACACGCTCTGCAGTaGTGCCTCCTTTTGGTGAATGTAAACCGAGCTTCA +
Preference number: 6 (lower is better)
Translates to: QEAQKTFPHALQ*CLLLVNVNRAS
Trigger: TGAAGCTCGGTTTACATTCACCAAAAGGAGGCATCACTGCAGAGCGTGTGGGAAGGTTTTCTGTGCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CCA 72 bp AGTGGGAAAAGGAGTTGGAGATCCCTAGGTCTGTCCTaGAAGAGCTGTTCATGCCAGAAAGATCCTCATCTG +
Preference number: 6 (lower is better)
Translates to: SGKRSWRSLGLS*KSCSCQKDPHL
Trigger: CAGATGAGGATCTTTCTGGCATGAACAGCTCTTCCAGGACAGACCTAGGGATCTCCAACTCCTTTTCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 90 bp GGCTCTGTTTTTATTAAGAGCTCTCCACTTGAGTGGGAAAAGGAGTaGGAGATCCCTAGGTCTGTCCTGGAAGAGCTGTTCATGCCAGAA +
Preference number: 6 (lower is better)
Translates to: GSVFIKSSPLEWEKE*EIPRSVLEELFMPE
Trigger: TTCTGGCATGAACAGCTCTTCCAGGACAGACCTAGGGATCTCCAACTCCTTTTCCCACTCAAGTGGAGAGCTCTTAATAAAAACAGAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp CATCATGTTCTCCCAGGCTTGAGCATTCATCAGCACTaGGTGACAGATTACACACACTCTGGCTTCCTTTCT +
Preference number: 6 (lower is better)
Translates to: HHVLPGLSIHQH*VTDYTHSGFLS
Trigger: AGAAAGGAAGCCAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAATGCTCAAGCCTGGGAGAACATGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042185.8
ENSMUST00000106657.8
CDS CAA 72 bp CATGCCAGAAAGATCCTCATCTGGCATATAATTTCCTaGCTGTTTAATGGCAGGCCCTCCATCCATTCCCTG +
Preference number: 6 (lower is better)
Translates to: HARKILIWHIIS*LFNGRPSIHSL
Trigger: CAGGGAATGGATGGAGGGCCTGCCATTAAACAGCAAGGAAATTATATGCCAGATGAGGATCTTTCTGGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 72 bp CTTGGGTCTTGCACCACCAAAAGGAACACTAATAGATaGCAGGTTTGCTATCTTGGGGGAAGATTGCCCAAG +
Preference number: 6 (lower is better)
Translates to: LGSCTTKRNTNR*QVCYLGGRLPK
Trigger: CTTGGGCAATCTTCCCCCAAGATAGCAAACCTGCAATCTATTAGTGTTCCTTTTGGTGGTGCAAGACCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CCA 72 bp CCTTGCTGTTTAATGGCAGGCCCTCCATCCATTCCCTaGGATGAATTAACTGCTAAGCTTGTAACTGTAGAT +
Preference number: 6 (lower is better)
Translates to: PCCLMAGPPSIP*DELTAKLVTVD
Trigger: ATCTACAGTTACAAGCTTAGCAGTTAATTCATCCCAGGGAATGGATGGAGGGCCTGCCATTAAACAGCAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CCA 72 bp GTTGGTCTTCTGTCACAGCATTTTCATCAATCCACATaGTGTCAGTCTCTGGATTTAGACTACAGTCCTGTC +
Preference number: 6 (lower is better)
Translates to: VGLLSQHFHQST*CQSLDLDYSPV
Trigger: GACAGGACTGTAGTCTAAATCCAGAGACTGACACCATGTGGATTGATGAAAATGCTGTGACAGAAGACCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 72 bp CAATTGTCCCTTCCAGATAAAGCAGGAGTATCCGGCTaGAGATTCAAAGATAAATCAGATGGGAGGGAGTCT +
Preference number: 6 (lower is better)
Translates to: QLSLPDKAGVSG*RFKDKSDGRES
Trigger: AGACTCCCTCCCATCTGATTTATCTTTGAATCTCAAGCCGGATACTCCTGCTTTATCTGGAAGGGACAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp AATCGCTTTGCAATGTCCTTTTATCGCAGTTATGCATaGCAGCTACAACCAGAACATTCTTCTCGTCTGGCA +
Preference number: 6 (lower is better)
Translates to: NRFAMSFYRSYA*QLQPEHSSRLA
Trigger: TGCCAGACGAGAAGAATGTTCTGGTTGTAGCTGTCATGCATAACTGCGATAAAAGGACATTGCAAAGCGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp ATACTGGTTGCACTGTTAGATGAAGCCGCACAGAGATaGTTCACAGAATCCCTCTCTGGTTTTGGTTTATTC +
Preference number: 6 (lower is better)
Translates to: ILVALLDEAAQR*FTESLSGFGLF
Trigger: GAATAAACCAAAACCAGAGAGGGATTCTGTGAATCATCTCTGTGCGGCTTCATCTAACAGTGCAACCAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp AATTGTCCCTTCCAGATAAAGCAGGAGTATCCGGCTTaGGATTCAAAGATAAATCAGATGGGAGGGAGTCTT +
Preference number: 6 (lower is better)
Translates to: NCPFQIKQEYPA*DSKINQMGGSL
Trigger: AAGACTCCCTCCCATCTGATTTATCTTTGAATCTCAAGCCGGATACTCCTGCTTTATCTGGAAGGGACAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp AGGGTGGTAAATGGCTTTCTTGCAGAAATTCCAAACTaGCTAGCTCGGAGATCATTATCTGGACTATCTGGA +
Preference number: 6 (lower is better)
Translates to: RVVNGFLAEIPN*LARRSLSGLSG
Trigger: TCCAGATAGTCCAGATAATGATCTCCGAGCTAGTCAGTTTGGAATTTCTGCAAGAAAGCCATTTACCACCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 72 bp CCGCACAGAGATGATTCACAGAATCCCTCTCTGGTTTaGGTTTATTCAAAGCATCCATTTGTTTCTCCGAGT +
Preference number: 6 (lower is better)
Translates to: PHRDDSQNPSLV*VYSKHPFVSPS
Trigger: ACTCGGAGAAACAAATGGATGCTTTGAATAAACCAAAACCAGAGAGGGATTCTGTGAATCATCTCTGTGCGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 90 bp ACAGTGGAGAAATCATATCCTTCACTCTCATTCATGCAAGTTCCTTaGAAATCTAGATCAGAATCTGCCATTCCAACACACTCGCCTCCA +
Preference number: 6 (lower is better)
Translates to: TVEKSYPSLSFMQVP*KSRSESAIPTHSPP
Trigger: TGGAGGCGAGTGTGTTGGAATGGCAGATTCTGATCTAGATTTCAAAGGAACTTGCATGAATGAGAGTGAAGGATATGATTTCTCCACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 90 bp CATGAGGGATTGACTATTGTAATTATTACAATCCTGCAAATCGCTTaGCAATGTCCTTTTATCGCAGTTATGCATGACAGCTACAACCAG +
Preference number: 6 (lower is better)
Translates to: HEGLTIVIITILQIA*QCPFIAVMHDSYNQ
Trigger: CTGGTTGTAGCTGTCATGCATAACTGCGATAAAAGGACATTGCAAAGCGATTTGCAGGATTGTAATAATTACAATAGTCAATCCCTCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp TTCACACTGGCTAATGCAGGGTTAAAAGACAATGGGTaGGAAGAGGGATCTAAAATCTTATTCCACTTTGTA +
Preference number: 6 (lower is better)
Translates to: FTLANAGLKDNG*EEGSKILFHFV
Trigger: TACAAAGTGGAATAAGATTTTAGATCCCTCTTCTCACCCATTGTCTTTTAACCCTGCATTAGCCAGTGTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 72 bp CTTCTGTTACTGAATCTTCTTTGGAGGGTAATGTCTTaGGAACAAAAGATACAATTGGGCTCTGCATTCCAT +
Preference number: 6 (lower is better)
Translates to: LLLLNLLWRVMS*EQKIQLGSAFH
Trigger: ATGGAATGCAGAGCCCAATTGTATCTTTTGTTCCAAAGACATTACCCTCCAAAGAAGATTCAGTAACAGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 72 bp AAATCATATCCTTCACTCTCATTCATGCAAGTTCCTTaGAAATCTAGATCAGAATCTGCCATTCCAACACAC +
Preference number: 6 (lower is better)
Translates to: KSYPSLSFMQVP*KSRSESAIPTH
Trigger: GTGTGTTGGAATGGCAGATTCTGATCTAGATTTCAAAGGAACTTGCATGAATGAGAGTGAAGGATATGATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS TCA 72 bp CCTTTTTCCGTGGACCCATTCATACTAAAACTAAATTaGTCAGTTTGTCTAGTCTCATTATCCAGTGAACAA +
Preference number: 6 (lower is better)
Translates to: PFSVDPFILKLN*SVCLVSLSSEQ
Trigger: TTGTTCACTGGATAATGAGACTAGACAAACTGATCAATTTAGTTTTAGTATGAATGGGTCCACGGAAAAAGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8
CDS CAA 72 bp TTGACTATTGTAATTATTACAATCCTGCAAATCGCTTaGCAATGTCCTTTTATCGCAGTTATGCATGACAGC +
Preference number: 6 (lower is better)
Translates to: LTIVIITILQIA*QCPFIAVMHDS
Trigger: GCTGTCATGCATAACTGCGATAAAAGGACATTGCAAAGCGATTTGCAGGATTGTAATAATTACAATAGTCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106657.8
ENSMUST00000106658.8