Pregenerated sensors for ZFTA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053080Ensembl transcript IDs: ENSMUST00000159346.2, ENSMUST00000159348.3, ENSMUST00000161907.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGCGCGACACACCGCGCCAGGCTTGAGATCCGCGCCGCTGTCTCGTaGTGCCGGGGCGGGTGGCCCAAAGCCCTCGTGGCCGTAGCAACG | + |
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Preference number: 5 (lower is better) Translates to: RATHRARLEIRAAVS*CRGGWPKALVAVAT Trigger: CGTTGCTACGGCCACGAGGGCTTTGGGCCACCCGCCCCGGCACCACGAGACAGCGGCGCGGATCTCAAGCCTGGCGCGGTGTGTCGCGCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS TCA 90 bp | CGCGGGTCTCTCCGACGGAGCTCCAGGGGACAGCGGCGCGTCGCCTaGGCCCTTGGGTGGGCAAGCTTGCAGGTTGGCCCCCTCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RGSLRRSSRGQRRVA*ALGWASLQVGPLLL Trigger: GAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGGCGACGCGCCGCTGTCCCCTGGAGCTCCGTCGGAGAGACCCGCG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161907.2 |
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| CDS GCA 90 bp | GCGACACACCGCGCCAGGCTTGAGATCCGCGCCGCTGTCTCGTGGTaGCGGGGCGGGTGGCCCAAAGCCCTCGTGGCCGTAGCAACGCAG | + |
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Preference number: 5 (lower is better) Translates to: ATHRARLEIRAAVSW*RGGWPKALVAVATQ Trigger: CTGCGTTGCTACGGCCACGAGGGCTTTGGGCCACCCGCCCCGGCACCACGAGACAGCGGCGCGGATCTCAAGCCTGGCGCGGTGTGTCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS CCA 90 bp | GCCAGGCTTGAGATCCGCGCCGCTGTCTCGTGGTGCCGGGGCGGGTaGCCCAAAGCCCTCGTGGCCGTAGCAACGCAGCGCTGCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: ARLEIRAAVSWCRGG*PKALVAVATQRCLL Trigger: GAGGAGGCAGCGCTGCGTTGCTACGGCCACGAGGGCTTTGGGCCACCCGCCCCGGCACCACGAGACAGCGGCGCGGATCTCAAGCCTGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS GCA 90 bp | CGTCGTAGTCCATCAAGTATTCGCCCCGCCAGCGCGGCTGGTAGTTaGGCCGCTGCTCCCGGCTGCGCGGCGGAGGTGGAGGTGGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: RRSPSSIRPASAAGS*AAAPGCAAEVEVAV Trigger: CACCGCCACCTCCACCTCCGCCGCGCAGCCGGGAGCAGCGGCGCAACTACCAGCCGCGCTGGCGGGGCGAATACTTGATGGACTACGACG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS TCA 90 bp | TGGGGGCCACTGAGCCCTAGGGAGCTGGGGTGCACTTCCAGCACGTaGGCACGGATGTCGTCCAAGTGCAGGCTGGGCAGTGCCCGGCCG | + |
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Preference number: 5 (lower is better) Translates to: WGPLSPRELGCTSST*ARMSSKCRLGSARP Trigger: CGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 90 bp | GCTCCAGCAGCGGGGGCGGAGTCCCGGCTCTTTCTGGTCAGGTCCTaGGGGACGAGGTCATCGTCTGGTGAGGGCTGGGTGAGCTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: APAAGAESRLFLVRS*GTRSSSGEGWVSSD Trigger: GTCCGAGCTCACCCAGCCCTCACCAGACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159346.2 ENSMUST00000159348.3 |
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| CDS GCA 90 bp | TTCCAGCACGTGAGCACGGATGTCGTCCAAGTGCAGGCTGGGCAGTaGCCGGCCGCAGGCCATGCACACCAGCCGATTCCCCCGTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: FQHVSTDVVQVQAGQ*PAAGHAHQPIPPWV Trigger: GACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 90 bp | GGTGCACTTCCAGCACGTGAGCACGGATGTCGTCCAAGTGCAGGCTaGGCAGTGCCCGGCCGCAGGCCATGCACACCAGCCGATTCCCCC | + |
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Preference number: 5 (lower is better) Translates to: GALPAREHGCRPSAG*AVPGRRPCTPADSP Trigger: GGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 90 bp | GGCAGCCCCAGGGCCAGCAGGTGTGCGGCCTTTTCGCTCCACTCCTaGGCGATGAGAGCTTTGACTGGCCCGCTGAGGCTGTTGGAGCCG | + |
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Preference number: 5 (lower is better) Translates to: GSPRASRCAAFSLHS*AMRALTGPLRLLEP Trigger: CGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS TCA 90 bp | TGGGTCGTAGTCCATGAGACACTCAGCCCGGAACCAGTTCTGCAGTaGCTCCTTCAGCCTCCGCTCCAGGCGCCGGGCCCCCAGCCCCCT | + |
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Preference number: 5 (lower is better) Translates to: WVVVHETLSPEPVLQ*LLQPPLQAPGPQPP Trigger: AGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000159346.2 ENSMUST00000159348.3 |
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| CDS CCA 90 bp | GGGCAGTGCCCGGCCGCAGGCCATGCACACCAGCCGATTCCCCCGTaGGTCGTAGTCCATGAGACACTCAGCCCGGAACCAGTTCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: GQCPAAGHAHQPIPP*VVVHETLSPEPVLQ Trigger: CTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 90 bp | GTGTGCGGCCTTTTCGCTCCACTCCTGGGCGATGAGAGCTTTGACTaGCCCGCTGAGGCTGTTGGAGCCGGGGTGGCGCTGGCGGATGTG | + |
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Preference number: 5 (lower is better) Translates to: VCGLFAPLLGDESFD*PAEAVGAGVALADV Trigger: CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS GCA 90 bp | GCCGCCAGTGGTCGTGGTAATAGCGCCGGTGGTCCCTGCCGGGGATaGGACTCTTTCCAGGCCTCGAGGCCCGAGCCTCACAATGATCTG | + |
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Preference number: 5 (lower is better) Translates to: AASGRGNSAGGPCRG*DSFQASRPEPHNDL Trigger: CAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS TCA 90 bp | GCTGGTCACCCCAGGCCAGCCGATTCCCCCGTGGGTCGTAGTCCATaGGACACTCAGCCCGGAACCAGTTCTGCAGTGACTCCTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: AGHPRPADSPVGRSP*DTQPGTSSAVTPSA Trigger: GGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGCCTGGGGTGACCAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159346.2 |
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| CDS TCA 90 bp | CGCAGGCCATGCACACCAGCCGATTCCCCCGTGGGTCGTAGTCCATaGGACACTCAGCCCGGAACCAGTTCTGCAGTGACTCCTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: RRPCTPADSPVGRSP*DTQPGTSSAVTPSA Trigger: GGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS TCA 90 bp | CCGGGGATGCGACTCTTTCCAGGCCTCGAGGCCCGAGCCTCACAATaGTCTGAGTATTTCCTGCCTGAAGATGCTGGTCCCCTGGCCCTG | + |
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Preference number: 5 (lower is better) Translates to: PGMRLFPGLEARASQ*SEYFLPEDAGPLAL Trigger: CAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS GCA 72 bp | GAAGAGCTTGTCCGCCGTCGTCCTCCTCGGGCTCCGTaGCGCCGCTCGCTGCGGTGGGCGGCAGCCGTCGGC | + |
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Preference number: 6 (lower is better) Translates to: EELVRRRPPRAP*RRSLRWAAAVG Trigger: GCCGACGGCTGCCGCCCACCGCAGCGAGCGGCGGCACGGAGCCCGAGGAGGACGACGGCGGACAAGCTCTTC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 72 bp | CACCGCGCCAGGCTTGAGATCCGCGCCGCTGTCTCGTaGTGCCGGGGCGGGTGGCCCAAAGCCCTCGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: HRARLEIRAAVS*CRGGWPKALVA Trigger: GGCCACGAGGGCTTTGGGCCACCCGCCCCGGCACCACGAGACAGCGGCGCGGATCTCAAGCCTGGCGCGGTG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS GCA 72 bp | CGCGCCAGGCTTGAGATCCGCGCCGCTGTCTCGTGGTaGCGGGGCGGGTGGCCCAAAGCCCTCGTGGCCGTA | + |
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Preference number: 6 (lower is better) Translates to: RARLEIRAAVSW*RGGWPKALVAV Trigger: TACGGCCACGAGGGCTTTGGGCCACCCGCCCCGGCACCACGAGACAGCGGCGCGGATCTCAAGCCTGGCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS CCA 72 bp | GAGATCCGCGCCGCTGTCTCGTGGTGCCGGGGCGGGTaGCCCAAAGCCCTCGTGGCCGTAGCAACGCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: EIRAAVSWCRGG*PKALVAVATQR Trigger: GCGCTGCGTTGCTACGGCCACGAGGGCTTTGGGCCACCCGCCCCGGCACCACGAGACAGCGGCGCGGATCTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS TCA 72 bp | CTCCGACGGAGCTCCAGGGGACAGCGGCGCGTCGCCTaGGCCCTTGGGTGGGCAAGCTTGCAGGTTGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: LRRSSRGQRRVA*ALGWASLQVGP Trigger: GGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGGCGACGCGCCGCTGTCCCCTGGAGCTCCGTCGGAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161907.2 |
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| CDS GCA 72 bp | CCATCAAGTATTCGCCCCGCCAGCGCGGCTGGTAGTTaGGCCGCTGCTCCCGGCTGCGCGGCGGAGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: PSSIRPASAAGS*AAAPGCAAEVE Trigger: CTCCACCTCCGCCGCGCAGCCGGGAGCAGCGGCGCAACTACCAGCCGCGCTGGCGGGGCGAATACTTGATGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS CAA 72 bp | GGAGCTCCAGGGGACAGCGGCGCGTCGCCTGAGCCCTaGGGTGGGCAAGCTTGCAGGTTGGCCCCCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GAPGDSGASPEP*GGQACRLAPSS Trigger: GGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGGCGACGCGCCGCTGTCCCCTGGAGCTCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161907.2 |
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| CDS CCA 72 bp | GAGCTCCAGGGGACAGCGGCGCGTCGCCTGAGCCCTTaGGTGGGCAAGCTTGCAGGTTGGCCCCCTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ELQGTAARRLSP*VGKLAGWPPPP Trigger: AGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGGCGACGCGCCGCTGTCCCCTGGAGCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161907.2 |
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| CDS GCA 72 bp | GCCGCCAGTGGTCGTGGTAATAGCGCCGGTGGTCCCTaGCGGGGATGCGACTCTTTCCAGGCCTCGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: AASGRGNSAGGP*RGCDSFQASRP Trigger: GGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS GCA 72 bp | CCAAGTGCAGGCTGGGCAGTGCCCGGCCGCAGGCCATaGACACCAGCCGATTCCCCCGTGGGTCGTAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PSAGWAVPGRRP*TPADSPVGRSP Trigger: TGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 72 bp | GCGGGGGCGGAGTCCCGGCTCTTTCTGGTCAGGTCCTaGGGGACGAGGTCATCGTCTGGTGAGGGCTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: AGAESRLFLVRS*GTRSSSGEGWV Trigger: CACCCAGCCCTCACCAGACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159346.2 ENSMUST00000159348.3 |
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| CDS CCA 72 bp | GGGCTCCAGCAGCGGGGGCGGAGTCCCGGCTCTTTCTaGTCAGGTCCTGGGGGACGAGGTCATCGTCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GLQQRGRSPGSF*SGPGGRGHRLV Trigger: CACCAGACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000159346.2 ENSMUST00000159348.3 |
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| CDS CCA 72 bp | CCAGCACGTGAGCACGGATGTCGTCCAAGTGCAGGCTaGGCAGTGCCCGGCCGCAGGCCATGCACACCAGCC | + |
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Preference number: 6 (lower is better) Translates to: PAREHGCRPSAG*AVPGRRPCTPA Trigger: GGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CAA 90 bp | AGCAGGTGTGCGGCCTTTTCGCTCCACTCCTGGGCGATGAGAGCTTaGACTGGCCCGCTGAGGCTGTTGGAGCCGGGGTGGCGCTGGCGG | + |
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Preference number: 6 (lower is better) Translates to: SRCAAFSLHSWAMRA*TGPLRLLEPGWRWR Trigger: CCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS GCA 72 bp | GGTCGTGGTAATAGCGCCGGTGGTCCCTGCCGGGGATaGGACTCTTTCCAGGCCTCGAGGCCCGAGCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: GRGNSAGGPCRG*DSFQASRPEPH Trigger: GTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS GCA 72 bp | GTGAGCACGGATGTCGTCCAAGTGCAGGCTGGGCAGTaGCCGGCCGCAGGCCATGCACACCAGCCGATTCCC | + |
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Preference number: 6 (lower is better) Translates to: VSTDVVQVQAGQ*PAAGHAHQPIP Trigger: GGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS TCA 72 bp | GTCCATGAGACACTCAGCCCGGAACCAGTTCTGCAGTaGCTCCTTCAGCCTCCGCTCCAGGCGCCGGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: VHETLSPEPVLQ*LLQPPLQAPGP Trigger: GGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159346.2 ENSMUST00000159348.3 |
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| CDS TCA 72 bp | GTACTCCCCCAGGACCCTAAGGCACCCCCTTCCAGCTaGAGAGCTTGTCCGCCGTCGTCCTCCTCGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: VLPQDPKAPPSS*RACPPSSSSGS Trigger: GGAGCCCGAGGAGGACGACGGCGGACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 72 bp | AGGTCCTGGGGGACGAGGTCATCGTCTGGTGAGGGCTaGGTGAGCTCGGACAGAGCCTCAGGCTGGTCACCC | + |
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Preference number: 6 (lower is better) Translates to: RSWGTRSSSGEG*VSSDRASGWSP Trigger: GGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAGACGATGACCTCGTCCCCCAGGACCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159346.2 ENSMUST00000159348.3 |
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| CDS CCA 72 bp | CCGGCCGCAGGCCATGCACACCAGCCGATTCCCCCGTaGGTCGTAGTCCATGAGACACTCAGCCCGGAACCA | + |
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Preference number: 6 (lower is better) Translates to: PAAGHAHQPIPP*VVVHETLSPEP Trigger: TGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CAA 72 bp | GCGGCCTTTTCGCTCCACTCCTGGGCGATGAGAGCTTaGACTGGCCCGCTGAGGCTGTTGGAGCCGGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: AAFSLHSWAMRA*TGPLRLLEPGW Trigger: CCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 72 bp | CTCAGGCTGGTCACCCCAGGCCAGCCGATTCCCCCGTaGGTCGTAGTCCATGAGACACTCAGCCCGGAACCA | + |
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Preference number: 6 (lower is better) Translates to: LRLVTPGQPIPP*VVVHETLSPEP Trigger: TGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGCCTGGGGTGACCAGCCTGAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159346.2 |
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| CDS CCA 72 bp | CTTTTCGCTCCACTCCTGGGCGATGAGAGCTTTGACTaGCCCGCTGAGGCTGTTGGAGCCGGGGTGGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: LFAPLLGDESFD*PAEAVGAGVAL Trigger: CAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS CCA 72 bp | AGGGCCAGCAGGTGTGCGGCCTTTTCGCTCCACTCCTaGGCGATGAGAGCTTTGACTGGCCCGCTGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RASRCAAFSLHS*AMRALTGPLRL Trigger: CAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS TCA 72 bp | CCCAGGCCAGCCGATTCCCCCGTGGGTCGTAGTCCATaGGACACTCAGCCCGGAACCAGTTCTGCAGTGACT | + |
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Preference number: 6 (lower is better) Translates to: PRPADSPVGRSP*DTQPGTSSAVT Trigger: AGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGCCTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159346.2 |
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| CDS TCA 72 bp | TGCACACCAGCCGATTCCCCCGTGGGTCGTAGTCCATaGGACACTCAGCCCGGAACCAGTTCTGCAGTGACT | + |
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Preference number: 6 (lower is better) Translates to: CTPADSPVGRSP*DTQPGTSSAVT Trigger: AGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159348.3 |
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| CDS GCA 72 bp | TCGAGGCCCGAGCCTCACAATGATCTGAGTATTTCCTaGCTGAAGATGCTGGTCCCCTGGCCCTGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SRPEPHNDLSIS*LKMLVPWPWRR Trigger: CCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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| CDS TCA 72 bp | CATAGGCCTCTAAAATGGTCTGGCGCTCCTCCGGGGTaGAGTCCATGGAGAAGGGATGCACCTGCAGAATGT | + |
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Preference number: 6 (lower is better) Translates to: HRPLKWSGAPPG*SPWRRDAPAEC Trigger: ACATTCTGCAGGTGCATCCCTTCTCCATGGACTTCACCCCGGAGGAGCGCCAGACCATTTTAGAGGCCTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159348.3 ENSMUST00000161907.2 |
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