RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFPM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022306

Ensembl transcript IDs: ENSMUST00000053467.6, ENSMUST00000230319.2

Found 451 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACACGGGTACCAAAGGTaGCTGCTTTCTTTAGTAACT +
Preference number: 2 (lower is better)
Translates to: KFILAALSLGVRFRLCLSHGYQR*LLSLVT
Trigger: AGTTACTAAAGAAAGCAGTCACCTTTGGTACCCGTG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCACGGGTACCAAAGGTaGCTGCTTTCTTTAGTAACT +
Preference number: 2 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDHGYQR*LLSLVT
Trigger: AGTTACTAAAGAAAGCAGTCACCTTTGGTACCCGTG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATTTAACAGCAAAGGTTaGAAAATTGAGACAGGGCTG +
Preference number: 2 (lower is better)
Translates to: KFILAALSLGVRFRLCLSFNSKG*KIETGL
Trigger: CAGCCCTGTCTCAATTTTTCAACCTTTGCTGTTAAA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR CAA 90 bp TACGGCTACATACGAATGCAAAGCCTAGTGACTAAGAGACTGTATTaGCTAAAATATAAAGTGCAATTGGAGCCTGATTATCCAAGAATT +
Preference number: 2 (lower is better)
Translates to: YGYIRMQSLVTKRLY*LKYKVQLEPDYPRI
Trigger: AATTCTTGGATAATCAGGCTCCAATTGCACTTTATATTTTAGCAAATACAGTCTCTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTTTAACAGCAAAGGTTaGAAAATTGAGACAGGGCTG +
Preference number: 2 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDFNSKG*KIETGL
Trigger: CAGCCCTGTCTCAATTTTTCAACCTTTGCTGTTAAA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR GCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACAGTGCAAACCATATGTaGTACACAAGAACTATACAA +
Preference number: 2 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDSANHM*YTRTIQ
Trigger: TTGTATAGTTCTTGTGTAGCACATATGGTTTGCACT...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAGTGCAAACCATATGTaGTACACAAGAACTATACAA +
Preference number: 2 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVSANHM*YTRTIQ
Trigger: TTGTATAGTTCTTGTGTAGCACATATGGTTTGCACT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTTCTGTTTGAGAAAATaGACAGAAATATACGGCTAC +
Preference number: 2 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLFCLRK*TEIYGY
Trigger: GTAGCCGTATATTTCTGTCCATTTTCTCAAACAGAA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTTCTGTTTGAGAAAATaGACAGAAATATACGGCTAC +
Preference number: 2 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIFCLRK*TEIYGY
Trigger: GTAGCCGTATATTTCTGTCCATTTTCTCAAACAGAA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACATTCAAACAGCGTCTTaGTTTTCTGGACTGTTTAGA +
Preference number: 3 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYIQTAS*FSGLFR
Trigger: TCTAAACAGTCCAGAAAACAAAGACGCTGTTTGAAT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
3UTR-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGATTCAAACAGCGTCTTaGTTTTCTGGACTGTTTAGA +
Preference number: 3 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLIQTAS*FSGLFR
Trigger: TCTAAACAGTCCAGAAAACAAAGACGCTGTTTGAAT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGGCGGCCGCTGTTCCTaGTCAGGTAGGCACATTTCG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYGGRCS*SGRHIS
Trigger: CGAAATGTGCCTACCTGAGCAGGAACAGCGGCCGCC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTGCCTCAGTCGACGGTaGACCAGCTCGGACATCTTC +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYCLSRR*TSSDIF
Trigger: GAAGATGTCCGAGCTGGTGCACCGTCGACTGAGGCA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGGGGATTTGGCCATCTaGTGCCATCTGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYGDLAI*CHLLLQ
Trigger: CTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGAGCTCTTCACCCTCTaGGATGGCCTTCGTTGTGGT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYELFTL*DGLRCG
Trigger: ACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATTCGGGCTCAAAGCCTaGGGGGAAGCTTCCCTCCAG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSFGLKA*GEASLQ
Trigger: CTGGAGGGAAGCTTCCCCGCAGGCTTTGAGCCCGAA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTGGAGCTCCTGGTGCTaGAGTAGCTCCCTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVWSSWC*SSSLWV
Trigger: GACCCAGAGGGAGCTACTGCAGCACCAGGAGCTCCA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATGGAGCTCCTGGTGCTaGAGTAGCTCCCTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSWSSWC*SSSLWV
Trigger: GACCCAGAGGGAGCTACTGCAGCACCAGGAGCTCCA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGTGCGCATGGTTCTCTaGATGGCCGGCACTTTGTTG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYVRMVL*MAGTLL
Trigger: CAACAAAGTGCCGGCCATGCAGAGAACCATGCGCAC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGGCGGCCGCTGTTCCTaGTCAGGTAGGCACATTTCG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSGGRCS*SGRHIS
Trigger: CGAAATGTGCCTACCTGAGCAGGAACAGCGGCCGCC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACGGGACATGGAGCTCCTaGTGCTGCAGTAGCTCCCTC +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDGTWSS*CCSSSL
Trigger: GAGGGAGCTACTGCAGCACCAGGAGCTCCATGTCCC...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGGCTTGCGTGTGCGCATaGTTCTCTGCATGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKACVCA*FSAWPA
Trigger: TGCCGGCCATGCAGAGAACCATGCGCACACGCAAGC...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCCACTGCTGGGAGCCTaGCTGGCGCCATTCACACCT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCPLLGA*LAPFTP
Trigger: AGGTGTGAATGGCGCCAGCCAGGCTCCCAGCAGTGG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACATCGGAAGGCGGCTTaGGTGAGATGCGAGAACAGG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSHRKAA*VRCENR
Trigger: CCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACCCAGGTCATTACGCTaGTGTGCAGTGACAGGGCAG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSPRSLR*CAVTGQ
Trigger: CTGCCCTGTCACTGCACATCAGCGTAATGACCTGGG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACCAAAATGGCAGTGGTTaGATCGGAAGGCGGCTTGAG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYQNGSG*IGRRLE
Trigger: CTCAAGCCGCCTTCCGATGCAACCACTGCCATTTTG...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACATGGAGCTCCTGGTaGTGCAGTAGCTCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVTWSSW*CSSSLW
Trigger: CCAGAGGGAGCTACTGCAGCACCAGGAGCTCCATGT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACGGCCCGATGTTGGGTTaGACTGGAGATGAGGCGAGT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDGPMLG*TGDEAS
Trigger: ACTCGCCTCATCTCCAGTGCAACCCAACATCGGGCC...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACCAGCAGTCAGCACCATaGGGACCTGAGCCTTCGTCT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDQQSAP*GPEPSS
Trigger: AGACGAAGGCTCAGGTCCCCATGGTGCTGACTGCTG...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGGCTCTTGGTGCATTGTaGGAAGGGGCACAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKALGAL*EGAQAG
Trigger: TCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGC...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTTGCCACTGGGGACATaGAGCTCCTGGTGCTGCAGT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDLPLGT*SSWCCS
Trigger: ACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTCAAGAAATCTCTGCTaGACCAGGGGCGGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDSRNLC*TRGGRC
Trigger: ACAGCGGCCGCCCCTGGTCCAGCAGAGATTTCTTGA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACTCCTAGCCCTTCGGTaGGCTCTTGAGTGGAGCTAC +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSLLALR*ALEWSY
Trigger: GTAGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATGCTGGGAGCCTGGCTaGCGCCATTCACACCTTTTG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSCWEPG*RHSHLL
Trigger: CAAAAGGTGTGAATGGCGCCAGCCAGGCTCCCAGCA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTGCTGGGAGCCTGGCTaGCGCCATTCACACCTTTTG +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVCWEPG*RHSHLL
Trigger: CAAAAGGTGTGAATGGCGCCAGCCAGGCTCCCAGCA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGCCACTGCTGGGAGCCTaGCTGGCGCCATTCACACCT +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLPLLGA*LAPFTP
Trigger: AGGTGTGAATGGCGCCAGCCAGGCTCCCAGCAGTGG...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAATGGCTGTCCCCATCTaGTTCTGCTGGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSMAVPI*FCWLLD
Trigger: ATCCAGGAGCCAGCAGAATCAGATGGGGACAGCCAT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR TCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGAGCTCTTCACCCTCTaGGATGGCCTTCGTTGTGGT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVELFTL*DGLRCG
Trigger: ACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGGAAGGCGGCTTGAGTaGGATGCGAGAACAGGTGTT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSGRRLE*DARTGV
Trigger: AACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACGTCCAGCTCTGTGTCTaGGCTTGCATCCTTAGTCGG +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDVQLCV*ACILSR
Trigger: CCGACTAAGGATGCAAGCTCAGACACAGAGCTGGAC...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGCTTCGCCAAGATCTCTaGAGCCTGAGGGACCATCGT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVLRQDL*SLRDHR
Trigger: ACGATGGTCCCTCAGGCTTCAGAGATCTTGGCGAAG...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTCTGGGTCCGATGAATaGGCGGCTGGGTTAAGAAGG +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVSGSDE*AAGLRR
Trigger: CCTTCTTAACCCAGCCGCTCATTCATCGGACCCAGA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATCTGGGTCCGATGAATaGGCGGCTGGGTTAAGAAGG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSSGSDE*AAGLRR
Trigger: CCTTCTTAACCCAGCCGCTCATTCATCGGACCCAGA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTACGCTGATGTGCAGTaGCAGGGCAGAAATTCTGCT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYYADVQ*QGRNSA
Trigger: AGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTTACGGCACACCCATTTaGGGAGGCCTGGCCTTTAGG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCYGTPI*GGLAFR
Trigger: CCTAAAGGCCAGGCCTCCTCAAATGGGTGTGCCGTA...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTTTCTCTGGGAAGTTTaGCACTGGGGACATGGAGCT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYFLWEV*HWGHGA
Trigger: AGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGTTTTGCTTGTTGGCTaGAGGCTGGATCTCTGGTCT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYVLLVG*RLDLWS
Trigger: AGACCAGAGATCCAGCCTGCAGCCAACAAGCAAAAC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGGCCCGATGTTGGGTTaGACTGGAGATGAGGCGAGT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCGPMLG*TGDEAS
Trigger: ACTCGCCTCATCTCCAGTGCAACCCAACATCGGGCC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACAGACAACTGTTCTTCTaGGCAGGGAATTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYRQLFF*AGNSWG
Trigger: TCCCCAGGAATTCCCTGCGCAGAAGAACAGTTGTCT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCAGCAGTCAGCACCATaGGGACCTGAGCCTTCGTCT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCQQSAP*GPEPSS
Trigger: AGACGAAGGCTCAGGTCCCCATGGTGCTGACTGCTG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGGAAGGGGCACAGGCTaGAAACCTGATGCGAGTTGT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSGRGTG*KPDASC
Trigger: ACAACTCGCATCAGGTTTCCAGCCTGTGCCCCTTCC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGGAAGGGGCACAGGCTaGAAACCTGATGCGAGTTGT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVGRGTG*KPDASC
Trigger: ACAACTCGCATCAGGTTTCCAGCCTGTGCCCCTTCC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGGGACATGGAGCTCCTaGTGCTGCAGTAGCTCCCTC +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDGTWSS*CCSSSL
Trigger: GAGGGAGCTACTGCAGCACCAGGAGCTCCATGTCCC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGATGGCCTTTTGGCTCTaGGAGAGGTCACTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVMAFWL*ERSLLA
Trigger: GGCCAGAAGTGACCTCTCCCAGAGCCAAAAGGCCAT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGAAAAGTCCTTCTCATaGCCTTTCCCGTTTGGCCCA +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYEKSFS*PFPFGP
Trigger: TGGGCCAAACGGGAAAGGCCATGAGAAGGACTTTTC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGCTTGCGTGTGCGCATaGTTCTCTGCATGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLACVCA*FSAWPA
Trigger: TGCCGGCCATGCAGAGAACCATGCGCACACGCAAGC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTGCGCAGGGAATTCCTaGGGAGACATTCTCATTTGC +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYCAGNS*GDILIC
Trigger: GCAAATGAGAATGTCTCCCCAGGAATTCCCTGCGCA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAGTATTTTCCACTGCTaGGAGCCTGGCTGGCGCCAT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVSIFHC*EPGWRH
Trigger: ATGGCGCCAGCCAGGCTCCCAGCAGTGGAAAATACT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAAGTATTTTCCACTGCTaGGAGCCTGGCTGGCGCCAT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSSIFHC*EPGWRH
Trigger: ATGGCGCCAGCCAGGCTCCCAGCAGTGGAAAATACT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGCATCGGAAGGCGGCTTaGGTGAGATGCGAGAACAGG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLHRKAA*VRCENR
Trigger: CCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATG...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTAGCTCCCTCTGGGTCTaGAAGCCAAAATGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCSSLWV*KPKWQW
Trigger: CCACTGCCATTTTGGCTTTCAGACCCAGAGGGAGCT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCCCAGGTCATTACGCTaGTGTGCAGTGACAGGGCAG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIPRSLR*CAVTGQ
Trigger: CTGCCCTGTCACTGCACATCAGCGTAATGACCTGGG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTTTGTAGCAATGAGCTaGGCTGCTTCGCTGAAGACT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYFVAMS*AASLKT
Trigger: AGTCTTCAGCGAAGCAGCTCAGCTCATTGCTACAAA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACACATGGAGCTCCTGGTaGTGCAGTAGCTCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDTWSSW*CSSSLW
Trigger: CCAGAGGGAGCTACTGCAGCACCAGGAGCTCCATGT...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGCCTCAGTCGACGGTaGACCAGCTCGGACATCTTC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSICLSRR*TSSDIF
Trigger: GAAGATGTCCGAGCTGGTGCACCGTCGACTGAGGCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGGGGATTTGGCCATCTaGTGCCATCTGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLGDLAI*CHLLLQ
Trigger: CTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATTCTTCGCTTGCGTGTaGGCATGGTTCTCTGCATGG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSFFACV*AWFSAW
Trigger: CCATGCAGAGAACCATGCGCACACGCAAGCGAAGAA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACATCAAGAAATCTCTaGTGGACCAGGGGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLTSRNL*WTRGGR
Trigger: GCGGCCGCCCCTGGTCCAGCAGAGATTTCTTGATGT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGTCGTCCGCTCAGACTaGGATAAACACTTTTTGCTG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYVVRSD*DKHFLL
Trigger: CAGCAAAAAGTGTTTATCGCAGTCTGAGCGGACGAC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGCTCTTGGTGCATTGTaGGAAGGGGCACAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDALGAL*EGAQAG
Trigger: TCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAAAGCCAAAATGGCAGTaGTTGCATCGGAAGGCGGCT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSKPKWQ*LHRKAA
Trigger: AGCCGCCTTCCGATGCAACCACTGCCATTTTGGCTT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAAGCCAAAATGGCAGTaGTTGCATCGGAAGGCGGCT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVKPKWQ*LHRKAA
Trigger: AGCCGCCTTCCGATGCAACCACTGCCATTTTGGCTT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTTGCCACTGGGGACATaGAGCTCCTGGTGCTGCAGT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDLPLGT*SSWCCS
Trigger: ACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGTCGGCATGGCCTTTTaGCTCTGGGAGAGGTCACTT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCVGMAF*LWERSL
Trigger: AAGTGACCTCTCCCAGAGCCAAAAGGCCATGCCGAC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACAGAAGTTTTGCTTGTTaGCTGCAGGCTGGATCTCTG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYRSFAC*LQAGSL
Trigger: CAGAGATCCAGCCTGCAGCCAACAAGCAAAACTTCT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGAGATGAGGCGAGTCTaGGACTGGAGGGCTCAGACT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIEMRRV*DWRAQT
Trigger: AGTCTGAGCCCTCCAGTCCCAGACTCGCCTCATCTC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGAAACTCAGGGGATTTaGCCATCTGCTGCCATCTGC +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVETQGI*PSAAIC
Trigger: GCAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTCAAGAAATCTCTGCTaGACCAGGGGCGGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDSRNLC*TRGGRC
Trigger: ACAGCGGCCGCCCCTGGTCCAGCAGAGATTTCTTGA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCTCCTAGCCCTTCGGTaGGCTCTTGAGTGGAGCTAC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSILLALR*ALEWSY
Trigger: GTAGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTCGGTGAGAGTCATGTaGCTAGCAGCTTGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVSVRVM*LAACSL
Trigger: AAGGCTACAAGCTGCTAGTCACATGACTCTCACCGA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATCGGTGAGAGTCATGTaGCTAGCAGCTTGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSSVRVM*LAACSL
Trigger: AAGGCTACAAGCTGCTAGTCACATGACTCTCACCGA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGGAAGGCGGCTTGAGTaGGATGCGAGAACAGGTGTT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIGRRLE*DARTGV
Trigger: AACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGAGCTCCCTCTGGGTCTaGAAGCCAAAATGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLSSLWV*KPKWQW
Trigger: CCACTGCCATTTTGGCTTTCAGACCCAGAGGGAGCT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGTCCAGCTCTGTGTCTaGGCTTGCATCCTTAGTCGG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDVQLCV*ACILSR
Trigger: CCGACTAAGGATGCAAGCTCAGACACAGAGCTGGAC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTACGCTGATGTGCAGTaGCAGGGCAGAAATTCTGCT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVYADVQ*QGRNSA
Trigger: AGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTACATCAAATGGGCTTaGAGGTTCCGCTCGCTCCGG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLYIKWA*RFRSLR
Trigger: CCGGAGCGAGCGGAACCTGCAAGCCCATTTGATGTA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTACATCAAATGGGCTTaGAGGTTCCGCTCGCTCCGG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIYIKWA*RFRSLR
Trigger: CCGGAGCGAGCGGAACCTGCAAGCCCATTTGATGTA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTTTCTCTGGGAAGTTTaGCACTGGGGACATGGAGCT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDFLWEV*HWGHGA
Trigger: AGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGTTTTGCTTGTTGGCTaGAGGCTGGATCTCTGGTCT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSVLLVG*RLDLWS
Trigger: AGACCAGAGATCCAGCCTGCAGCCAACAAGCAAAAC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACCATCTGCTGCCATCTaGTGCTGCAGTAGTGCTTTT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSPSAAI*CCSSAF
Trigger: AAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGTGCGCATGGTTCTCTaGATGGCCGGCACTTTGTTG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIVRMVL*MAGTLL
Trigger: CAACAAAGTGCCGGCCATGCAGAGAACCATGCGCAC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTGGGAAATGTTCTCTTaGTGTGGGTTGGCCGTAGGT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVWEMFS*CGLAVG
Trigger: ACCTACGGCCAACCCACAGCAAGAGAACATTTCCCA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGTGGGAAATGTTCTCTTaGTGTGGGTTGGCCGTAGGT +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKWEMFS*CGLAVG
Trigger: ACCTACGGCCAACCCACAGCAAGAGAACATTTCCCA...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTAGATGGCCTTCGTTGTaGTGCACCAAAGTTGGCCCC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIRWPSL*CTKVGP
Trigger: GGGGCCAACTTTGGTGCACCACAACGAAGGCCATCT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGGGAAGTTTGCCACTaGGGACATGGAGCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIWEVCH*GHGAPG
Trigger: ACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGGTCTTCCGTTCCACTTaGAGAGTGCTCCATGTCACT +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKVFRST*RVLHVT
Trigger: AGTGACATGGAGCACTCTCCAAGTGGAACGGAAGAC...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATGGCCAACAAGTCTGTaGCTGGCTGTAAGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSWPTSL*LAVSCL
Trigger: AAGACAGCTTACAGCCAGCCACAGACTTGTTGGCCA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGATGGCCTTTTGGCTCTaGGAGAGGTCACTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLMAFWL*ERSLLA
Trigger: GGCCAGAAGTGACCTCTCCCAGAGCCAAAAGGCCAT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAGGCGAGTCTGGGACTaGAGGGCTCAGACTTTATTT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVRRVWD*RAQTLF
Trigger: AAATAAAGTCTGAGCCCTCCAGTCCCAGACTCGCCT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACAGGTTTATGGAAGTCTaGCCAGTGTTAGGACTCACA +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYRFMEV*PVLGLT
Trigger: TGTGAGTCCTAACACTGGCCAGACTTCCATAAACCT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACGAAAAGTCCTTCTCATaGCCTTTCCCGTTTGGCCCA +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDEKSFS*PFPFGP
Trigger: TGGGCCAAACGGGAAAGGCCATGAGAAGGACTTTTC...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACACAGGTAGTCTTATTTaGGTCACTTTCCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYTGSLI*VTFPIH
Trigger: GTGGATGGGGAAAGTGACCCAAATAAGACTACCTGT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTTGGCCGGCACTTTGTTaGAAGCAGACCTCTTTAGCG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCWPALC*KQTSLA
Trigger: CGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCA...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGCATGGTTCTCTGCATaGCCGGCACTTTGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCAWFSA*PALCWK
Trigger: CTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGCGGTGGGCTCTTGAGTaGAGCTACAAGGATTGCTTA +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKRWALE*SYKDCL
Trigger: TAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCG...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGTCGACGTCAGTGTTGTaGATGACAAGAGAACTGGCG +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKSTSVL*MTRELA
Trigger: CGCCAGTTCTCTTGTCATCCACAACACTGACGTCGA...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTCGACGTCAGTGTTGTaGATGACAAGAGAACTGGCG +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDSTSVL*MTRELA
Trigger: CGCCAGTTCTCTTGTCATCCACAACACTGACGTCGA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACCCATGCCTCTGTTTTTaGGCAACAATGGCAGAGAAT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYPCLCF*ATMAEN
Trigger: ATTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGG...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTTGGGGAAAAGCAAACTaGGACAGGAAAGGTCCCACA +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCWGKAN*DRKGPT
Trigger: TGTGGGACCTTTCCTGTCTCAGTTTGCTTTTCCCCA...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACAAGATCTCTGAAGCCTaGGGGACCATCGTGATATCT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDKISEA*GTIVIS
Trigger: AGATATCACGATGGTCCCTCAGGCTTCAGAGATCTT...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGGTCCACCATTCACTATaGCCATGCCTCTGTTTTTGG +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKVHHSL*PCLCFW
Trigger: CCAAAAACAGAGGCATGGTCATAGTGAATGGTGGAC...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACTGTGTGAATTCAGGTaGATTTCTAGAGCTCGGGCA +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSLCEFR*ISRARA
Trigger: TGCCCGAGCTCTAGAAATGCACCTGAATTCACACAG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGCAAAATGGCAGTGGTTaGATCGGAAGGCGGCTTGAG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLQNGSG*IGRRLE
Trigger: CTCAAGCCGCCTTCCGATGCAACCACTGCCATTTTG...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGTTCCACTTGGAGAGTaGTCCATGTCACTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSVPLGE*SMSLSL
Trigger: CAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAAC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTTCTTCGCTTGCGTGTaGGCATGGTTCTCTGCATGG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLFFACV*AWFSAW
Trigger: CCATGCAGAGAACCATGCGCACACGCAAGCGAAGAA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAACATCTTTCTTCGCTTaGGTGTGCGCATGGTTCTCT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSTSFFA*VCAWFS
Trigger: AGAGAACCATGCGCACACGCAAGCGAAGAAAGATGT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACAGCAATGAGCTGAGCTaGTTCGCTGAAGACTTTCAG +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDSNELS*FAEDFQ
Trigger: CTGAAAGTCTTCAGCGAAGCAGCTCAGCTCATTGCT...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAAGCAATGAGCTGAGCTaGTTCGCTGAAGACTTTCAG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSSNELS*FAEDFQ
Trigger: CTGAAAGTCTTCAGCGAAGCAGCTCAGCTCATTGCT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCATTGGAAAAGCTCTTaGTGCATTGTGGGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCHWKSS*CIVGRG
Trigger: GCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGCTAGAGCTCGGGCATTaGAAAAGCTCTTGGTGCATT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVLELGH*KSSWCI
Trigger: AATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAG...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGTCTTCCGTTCCACTTaGAGAGTGCTCCATGTCACT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCVFRST*RVLHVT
Trigger: AGTGACATGGAGCACTCTCCAAGTGGAACGGAAGAC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGAAACTCAGGGGATTTaGCCATCTGCTGCCATCTGC +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLETQGI*PSAAIC
Trigger: GCAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGGCCGGCACTTTGTTaGAAGCAGACCTCTTTAGCG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIWPALC*KQTSLA
Trigger: CGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGCATGGTTCTCTGCATaGCCGGCACTTTGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLAWFSA*PALCWK
Trigger: CTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGCAGGAAACATTGGAATaGGTCGTGTCACACTTGGGA +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKQETLE*VVSHLG
Trigger: TCCCAAGTGTGACACGACCCATTCCAATGTTTCCTG...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGTTTTTGGGCAACAATaGCAGAGAATCTTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYVFGQQ*QRIFLG
Trigger: CCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAAC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAATGTTCTCTTGCTGTaGGTTGGCCGTAGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVNVLLL*VGRRSF
Trigger: GAAAGACCTACGGCCAACCCACAGCAAGAGAACATT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATGGCCATCTTCGTGCTaGGTATTCTGGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSWPSSC*VFWEMF
Trigger: GAACATTTCCCAGAATACCCAGCACGAAGATGGCCA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGCTGGTCTCTGATTGGTaGGGAAGAGTTGAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKLVSDW*GRVESF
Trigger: AAAAGACTCAACTCTTCCTCACCAATCAGAGACCAG...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGGGGAAAAGCAAACTaGGACAGGAAAGGTCCCACA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIWGKAN*DRKGPT
Trigger: TGTGGGACCTTTCCTGTCTCAGTTTGCTTTTCCCCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCCTGAGGGACCATCGTaGTATCTTGGGGAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDPEGPS*YLGEKQ
Trigger: TTGCTTTTCCCCAAGATATCACGATGGTCCCTCAGG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCCTGAGGGACCATCGTaGTATCTTGGGGAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIPEGPS*YLGEKQ
Trigger: TTGCTTTTCCCCAAGATATCACGATGGTCCCTCAGG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTAAGATCTCTGAAGCCTaGGGGACCATCGTGATATCT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCKISEA*GTIVIS
Trigger: AGATATCACGATGGTCCCTCAGGCTTCAGAGATCTT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGAAACGGTGGAAGAGTTaGTGCAGGATGTTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKKRWKS*CRMFEG
Trigger: TCCTTCAAACATCCTGCATCAACTCTTCCACCGTTT...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAAAACGGTGGAAGAGTTaGTGCAGGATGTTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSKRWKS*CRMFEG
Trigger: TCCTTCAAACATCCTGCATCAACTCTTCCACCGTTT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGGTTGCCAAGTGGGATaGAAACAAATTTCCGTTGGG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCGCQVG*KQISVG
Trigger: CCCAACGGAAATTTGTTTTCATCCCACTTGGCAACC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGTCCACCATTCACTATaGCCATGCCTCTGTTTTTGG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCVHHSL*PCLCFW
Trigger: CCAAAAACAGAGGCATGGTCATAGTGAATGGTGGAC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAAAAGTTGGCCCCCTTTaGTGTACACAATGCAGTTGT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSKVGPL*CTQCSC
Trigger: ACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGGAAAAGCTCTTGGTaGATTGTGGGAAGGGGCACA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIWKSSW*IVGRGT
Trigger: TGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTGGAAAAGCTCTTGGTaGATTGTGGGAAGGGGCACA +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLWKSSW*IVGRGT
Trigger: TGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGTCTGCTGCCATCTGCTaGTGCAGTAGTGCTTTTTAT +
Preference number: 4 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKSAAIC*CSSAFY
Trigger: ATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGA...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCCATCTGCTGCCATCTaGTGCTGCAGTAGTGCTTTT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIPSAAI*CCSSAF
Trigger: AAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGTCGTCCGCTCAGACTaGGATAAACACTTTTTGCTG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCVVRSD*DKHFLL
Trigger: CAGCAAAAAGTGTTTATCGCAGTCTGAGCGGACGAC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACGTCATTACGCTGATGTaGAGTGACAGGGCAGAAATT +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDVITLM*SDRAEI
Trigger: AATTTCTGCCCTGTCACTGCACATCAGCGTAATGAC...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTTTGTGGCCATCTTCGTaGTGGGTATTCTGGGAAATG +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCLWPSS*WVFWEM
Trigger: CATTTCCCAGAATACCCAGCACGAAGATGGCCACAA...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGAGACAACTGTTCTTCTaGGCAGGGAATTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLRQLFF*AGNSWG
Trigger: TCCCCAGGAATTCCCTGCGCAGAAGAACAGTTGTCT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGATTCTGCTGGCTCCTaGATTCCTTCGTCATCACCT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDDSAGS*IPSSSP
Trigger: AGGTGATGACGAAGGAATCCAGGAGCCAGCAGAATC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCATTGGAAAAGCTCTTaGTGCATTGTGGGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDHWKSS*CIVGRG
Trigger: GCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGCCATGTCACTTTCTCTaGGAAGTTTGCCACTGGGGA +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLPCHFL*EVCHWG
Trigger: TCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGG...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCCATGTCACTTTCTCTaGGAAGTTTGCCACTGGGGA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIPCHFL*EVCHWG
Trigger: TCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGGCCAACAAGTCTGTaGCTGGCTGTAAGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDWPTSL*LAVSCL
Trigger: AAGACAGCTTACAGCCAGCCACAGACTTGTTGGCCA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACAGGCGAGTCTGGGACTaGAGGGCTCAGACTTTATTT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDRRVWD*RAQTLF
Trigger: AAATAAAGTCTGAGCCCTCCAGTCCCAGACTCGCCT...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCGGTGGGCTCTTGAGTaGAGCTACAAGGATTGCTTA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDRWALE*SYKDCL
Trigger: TAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGCTCCGTTCACTTTCTaGATTCGGAAACACTTTACC +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVAPFTF*IRKHFT
Trigger: GGTAAAGTGTTTCCGAATCCAGAAAGTGAACGGAGC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGGGAGATGGTTGCTTTaGATTCCCATTCTTCTCACA +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSGRWLL*IPILLT
Trigger: TGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACCATTTGAGGAGGCCTaGCCTTTAGGAGATTCATTT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSPFEEA*PLGDSF
Trigger: AAATGAATCTCCTAAAGGCCAGGCCTCCTCAAATGG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGCGCAGGGAATTCCTaGGGAGACATTCTCATTTGC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSICAGNS*GDILIC
Trigger: GCAAATGAGAATGTCTCCCCAGGAATTCCCTGCGCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGGTGTTGGTGGAAGTTaGTCACAGAATCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDGVGGS*SQNQQC
Trigger: ACACTGCTGATTCTGTGATCAACTTCCACCAACACC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGGTGTTGGTGGAAGTTaGTCACAGAATCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIGVGGS*SQNQQC
Trigger: ACACTGCTGATTCTGTGATCAACTTCCACCAACACC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATTGGTGAGGAAGAGTTaGGTCTTTTTCTCACACTTG +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSLVRKS*VFFSHL
Trigger: CAAGTGTGAGAAAAAGACTCAACTCTTCCTCACCAA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTTGGTGAGGAAGAGTTaGGTCTTTTTCTCACACTTG +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDLVRKS*VFFSHL
Trigger: CAAGTGTGAGAAAAAGACTCAACTCTTCCTCACCAA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTAGGTGGGCAACTTTTTaGCTTGAGTGGAAAAGTCCT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCRWATF*LEWKSP
Trigger: AGGACTTTTCCACTCAAGTCAAAAAGTTGCCCACCT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGGTTGCCAAGTGGGATaGAAACAAATTTCCGTTGGG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDGCQVG*KQISVG
Trigger: CCCAACGGAAATTTGTTTTCATCCCACTTGGCAACC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTTTGTAGCAATGAGCTaGGCTGCTTCGCTGAAGACT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDFVAMS*AASLKT
Trigger: AGTCTTCAGCGAAGCAGCTCAGCTCATTGCTACAAA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCAATGCAGTTGTTTTTaGTGTCTTCCACTCCTTGCC +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCQCSCF*CLPLLA
Trigger: GGCAAGGAGTGGAAGACAGCAAAAACAACTGCATTG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCTGTGTGAATTCAGGTaGATTTCTAGAGCTCGGGCA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSILCEFR*ISRARA
Trigger: TGCCCGAGCTCTAGAAATGCACCTGAATTCACACAG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGTAGCTACAGACCGTaGATTTTAAACTCGCCCCAG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSICSYRP*ILNSPQ
Trigger: CTGGGGCGAGTTTAAAATGCACGGTCTGTAGCTACA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGTAGCTACAGACCGTaGATTTTAAACTCGCCCCAG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDCSYRP*ILNSPQ
Trigger: CTGGGGCGAGTTTAAAATGCACGGTCTGTAGCTACA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGTTCCACTTGGAGAGTaGTCCATGTCACTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLVPLGE*SMSLSL
Trigger: CAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAAC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTTCTGCTGCCATCTGCTaGTGCAGTAGTGCTTTTTAT +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCSAAIC*CSSAFY
Trigger: ATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGA...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACACATCTTTCTTCGCTTaGGTGTGCGCATGGTTCTCT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDTSFFA*VCAWFS
Trigger: AGAGAACCATGCGCACACGCAAGCGAAGAAAGATGT...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTGGAGCTACAAGGATTaGTTAGGTTGGCTACATCAA +
Preference number: 4 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDWSYKD*LGWLHQ
Trigger: TTGATGTAGCCAACCTAAGCAATCCTTGTAGCTCCA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGTAGGTCTTTCATCTTaGTTGAGTCCACCATTCACT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVVGLSS*LSPPFT
Trigger: AGTGAATGGTGGACTCAAGCAAGATGAAAGACCTAC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTTGTGGCCATCTTCGTaGTGGGTATTCTGGGAAATG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSILWPSS*WVFWEM
Trigger: CATTTCCCAGAATACCCAGCACGAAGATGGCCACAA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGCCATTCACACCTTTTaGTATGCTAGACAACTGTTC +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVAIHTF*YARQLF
Trigger: GAACAGTTGTCTAGCATAGCAAAAGGTGTGAATGGC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGCCTGGTTTGTCTGAATaGCTGTCCCCATCTGATTCT +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLPGLSE*LSPSDS
Trigger: AGAATCAGATGGGGACAGCCATTCAGACAAACCAGG...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCTAGAGCTCGGGCATTaGAAAAGCTCTTGGTGCATT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSILELGH*KSSWCI
Trigger: AATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACAGAAGTTTTGCTTGTTaGCTGCAGGCTGGATCTCTG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDRSFAC*LQAGSL
Trigger: CAGAGATCCAGCCTGCAGCCAACAAGCAAAACTTCT...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCCACTAAGGGACCGCTaGGATTTTTCACATCAACAG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDPLRDR*DFSHQQ
Trigger: CTGTTGATGTGAAAAATCCCAGCGGTCCCTTAGTGG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTACAGGTAGTCTTATTTaGGTCACTTTCCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCTGSLI*VTFPIH
Trigger: GTGGATGGGGAAAGTGACCCAAATAAGACTACCTGT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACAAGGATTGCTTAGGTTaGCTACATCAAGAAATCTCT +
Preference number: 4 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYKDCLG*LHQEIS
Trigger: AGAGATTTCTTGATGTAGCCAACCTAAGCAATCCTT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCAGGAAACATTGGAATaGGTCGTGTCACACTTGGGA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDQETLE*VVSHLG
Trigger: TCCCAAGTGTGACACGACCCATTCCAATGTTTCCTG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGCTCCGTTCACTTTCTaGATTCGGAAACACTTTACC +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCAPFTF*IRKHFT
Trigger: GGTAAAGTGTTTCCGAATCCAGAAAGTGAACGGAGC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGCAGAGAATCTTTCTTaGGTACGGCACACCCATTTG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLAENLS*VRHTHL
Trigger: CAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGCAGAGAATCTTTCTTaGGTACGGCACACCCATTTG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDAENLS*VRHTHL
Trigger: CAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTAATGTTCTCTTGCTGTaGGTTGGCCGTAGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSINVLLL*VGRRSF
Trigger: GAAAGACCTACGGCCAACCCACAGCAAGAGAACATT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGGCCATCTTCGTGCTaGGTATTCTGGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDWPSSC*VFWEMF
Trigger: GAACATTTCCCAGAATACCCAGCACGAAGATGGCCA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCTGGTCTCTGATTGGTaGGGAAGAGTTGAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSILVSDW*GRVESF
Trigger: AAAAGACTCAACTCTTCCTCACCAATCAGAGACCAG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCATTTGTTCATGGCCAATaGTGTTTCCAAGTGCTTAGA +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSFVHGQ*CFQVLR
Trigger: TCTAAGCACTTGGAAACATCATTGGCCATGAACAAA...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCAATGCAGTTGTTTTTaGTGTCTTCCACTCCTTGCC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIQCSCF*CLPLLA
Trigger: GGCAAGGAGTGGAAGACAGCAAAAACAACTGCATTG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTAAAGTTGGCCCCCTTTaGTGTACACAATGCAGTTGT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIKVGPL*CTQCSC
Trigger: ACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAGATGCCACAGGACTTaGAAGGGAATATATCCTTAT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVRCHRT*KGIYPY
Trigger: ATAAGGATATATTCCCTTGCAAGTCCTGTGGCATCT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGCTGCCATCTGCTGCTaGAGTAGTGCTTTTTATGAA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIAAICC*SSAFYE
Trigger: TTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTAGGGTCATGGCGTGTTaGACAGTAATACTGTTTGTG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIRVMAC*TVILFV
Trigger: CACAAACAGTATTACTGTGCAACACGCCATGACCCT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGTCATTACGCTGATGTaGAGTGACAGGGCAGAAATT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIVITLM*SDRAEI
Trigger: AATTTCTGCCCTGTCACTGCACATCAGCGTAATGAC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGCCATTCACACCTTTTaGTATGCTAGACAACTGTTC +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCAIHTF*YARQLF
Trigger: GAACAGTTGTCTAGCATAGCAAAAGGTGTGAATGGC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACAGGTTTATGGAAGTCTaGCCAGTGTTAGGACTCACA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDRFMEV*PVLGLT
Trigger: TGTGAGTCCTAACACTGGCCAGACTTCCATAAACCT...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGGGAGATGGTTGCTTTaGATTCCCATTCTTCTCACA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDGRWLL*IPILLT
Trigger: TGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCTTTATCCCATAGTATaGAGAAAGTTGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCLYPIV*RKLVSS
Trigger: GGAGCTGACCAACTTTCTCCATACTATGGGATAAAG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGCCATTTGAGGAGGCCTaGCCTTTAGGAGATTCATTT +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLPFEEA*PLGDSF
Trigger: AAATGAATCTCCTAAAGGCCAGGCCTCCTCAAATGG...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCCATGCCTCTGTTTTTaGGCAACAATGGCAGAGAAT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDPCLCF*ATMAEN
Trigger: ATTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGGCAACTTTTTGACTTaGGTGGAAAAGTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDGNFLT*VEKSFS
Trigger: TGAGAAGGACTTTTCCACTCAAGTCAAAAAGTTGCC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGGCAACTTTTTGACTTaGGTGGAAAAGTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIGNFLT*VEKSFS
Trigger: TGAGAAGGACTTTTCCACTCAAGTCAAAAAGTTGCC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGAAAGATTATTGAACTaGATATCGCATAGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLERLLN*ISHSRQ
Trigger: CTGCCGGCTATGCGATATTCAGTTCAATAATCTTTC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACTTTGCTGTACACAATaGAGTTGTTTTTGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSLCCTQ*SCFCCL
Trigger: AAGACAGCAAAAACAACTGCATTGTGTACAGCAAAG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGCTTTGCTGTACACAATaGAGTTGTTTTTGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVLCCTQ*SCFCCL
Trigger: AAGACAGCAAAAACAACTGCATTGTGTACAGCAAAG...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTTTTGTCTTCTTTATTaGTCCAGGGTAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVFCLLY*SRVKAL
Trigger: CAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACATTTTCTGTATTTGTaGTTTGTTCGACGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: KFILAALSLGVRFRLCLSHFLYL*FVRRQC
Trigger: ACACTGACGTCGAACAAAGCACAAATACAGAAAATG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGTAGGTCTTTCATCTTaGTTGAGTCCACCATTCACT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDVGLSS*LSPPFT
Trigger: AGTGAATGGTGGACTCAAGCAAGATGAAAGACCTAC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGAAGGATTGCTTAGGTTaGCTACATCAAGAAATCTCT +
Preference number: 4 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVKDCLG*LHQEIS
Trigger: AGAGATTTCTTGATGTAGCCAACCTAAGCAATCCTT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGCAAGGTTGCCAAGTaGGATGAAAACAAATTTCCG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDCKVAK*DENKFP
Trigger: CGGAAATTTGTTTTCATCCCACTTGGCAACCTTGCA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGCAAGGTTGCCAAGTaGGATGAAAACAAATTTCCG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSICKVAK*DENKFP
Trigger: CGGAAATTTGTTTTCATCCCACTTGGCAACCTTGCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCTTTATCCCATAGTATaGAGAAAGTTGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDLYPIV*RKLVSS
Trigger: GGAGCTGACCAACTTTCTCCATACTATGGGATAAAG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGTTTTTGGGCAACAATaGCAGAGAATCTTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDVFGQQ*QRIFLG
Trigger: CCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAAC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR TCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTTTGTTCATGGCCAATaGTGTTTCCAAGTGCTTAGA +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIFVHGQ*CFQVLR
Trigger: TCTAAGCACTTGGAAACATCATTGGCCATGAACAAA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACAGATGCCACAGGACTTaGAAGGGAATATATCCTTAT +
Preference number: 4 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDRCHRT*KGIYPY
Trigger: ATAAGGATATATTCCCTTGCAAGTCCTGTGGCATCT...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTTTTTCAGAAACACTTaGAAACTCAGGGGATTTGGC +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIFFRNT*KLRGFG
Trigger: GCCAAATCCCCTGAGTTTCCAAGTGTTTCTGAAAAA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
37% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CCA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTTTTTCAGAAACACTTaGAAACTCAGGGGATTTGGC +
Preference number: 4 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLFFRNT*KLRGFG
Trigger: GCCAAATCCCCTGAGTTTCCAAGTGTTTCTGAAAAA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTTTTGTCTTCTTTATTaGTCCAGGGTAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIFCLLY*SRVKAL
Trigger: CAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
36% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR GCA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCATTTTCTGTATTTGTaGTTTGTTCGACGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIHFLYL*FVRRQC
Trigger: ACACTGACGTCGAACAAAGCACAAATACAGAAAATG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GCTCAGATTTTCGGGCTCAAAGCCTGCGGGGAAGCTTCCCTCCAGTaGAAAGTCGCCTTTCGAGATGACTTCGGCTTCCTCCACCGGACA +
Preference number: 5 (lower is better)
Translates to: AQIFGLKACGEASLQ*KVAFRDDFGFLHRT
Trigger: TGTCCGGTGGAGGAAGCCGAAGTCATCTCGAAAGGCGACTTTCCACTGGAGGGAAGCTTCCCCGCAGGCTTTGAGCCCGAAAATCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS TCA 90 bp GAGTCCAGCAGGCGGGCAGGGTACATCCCTTCGGTGAGAGTCATGTaGCTAGCAGCTTGTAGCCTTGAGTCAAAGTCCACCACAAAGGCG +
Preference number: 5 (lower is better)
Translates to: ESSRRAGYIPSVRVM*LAACSLESKSTTKA
Trigger: CGCCTTTGTGGTGGACTTTGACTCAAGGCTACAAGCTGCTAGTCACATGACTCTCACCGAAGGGATGTACCCTGCCCGCCTGCTGGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp CCGTTCCACTTGGAGAGTGCTCCATGTCACTTTCTCTGGGAAGTTTaGCACTGGGGACATGGAGCTCCTGGTGCTGCAGTAGCTCCCTCT +
Preference number: 5 (lower is better)
Translates to: PFHLESAPCHFLWEV*HWGHGAPGAAVAPS
Trigger: AGAGGGAGCTACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp CACTTGGAGAGTGCTCCATGTCACTTTCTCTGGGAAGTTTGCCACTaGGGACATGGAGCTCCTGGTGCTGCAGTAGCTCCCTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: HLESAPCHFLWEVCH*GHGAPGAAVAPSGS
Trigger: AGACCCAGAGGGAGCTACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp TCCAGCTCTGTGTCTGAGCTTGCATCCTTAGTCGGCATGGCCTTTTaGCTCTGGGAGAGGTCACTTCTGGCCAACAAGTCTGTGGCTGGC +
Preference number: 5 (lower is better)
Translates to: SSSVSELASLVGMAF*LWERSLLANKSVAG
Trigger: GCCAGCCACAGACTTGTTGGCCAGAAGTGACCTCTCCCAGAGCCAAAAGGCCATGCCGACTAAGGATGCAAGCTCAGACACAGAGCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GCCCTTCGGTGGGCTCTTGAGTGGAGCTACAAGGATTGCTTAGGTTaGCTACATCAAGAAATCTCTGCTGGACCAGGGGCGGCCGCTGTT +
Preference number: 5 (lower is better)
Translates to: ALRWALEWSYKDCLG*LHQEISAGPGAAAV
Trigger: AACAGCGGCCGCCCCTGGTCCAGCAGAGATTTCTTGATGTAGCCAACCTAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCGAAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp TGGCCTTTTGGCTCTGGGAGAGGTCACTTCTGGCCAACAAGTCTGTaGCTGGCTGTAAGCTGTCTTCCGTTCCACTTGGAGAGTGCTCCA +
Preference number: 5 (lower is better)
Translates to: WPFGSGRGHFWPTSL*LAVSCLPFHLESAP
Trigger: TGGAGCACTCTCCAAGTGGAACGGAAGACAGCTTACAGCCAGCCACAGACTTGTTGGCCAGAAGTGACCTCTCCCAGAGCCAAAAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp GCTACATCAAGAAATCTCTGCTGGACCAGGGGCGGCCGCTGTTCCTaGTCAGGTAGGCACATTTCGTACATCTTTCTTCGCTTGCGTGTG +
Preference number: 5 (lower is better)
Translates to: ATSRNLCWTRGGRCS*SGRHISYIFLRLRV
Trigger: CACACGCAAGCGAAGAAAGATGTACGAAATGTGCCTACCTGAGCAGGAACAGCGGCCGCCCCTGGTCCAGCAGAGATTTCTTGATGTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp AGTCAAAGTCCACCACAAAGGCGACGAGCTCTTCACCCTCTGAGATaGCCTTCGTTGTGGTGCACCAAAGTTGGCCCCCTTTGCTGTACA +
Preference number: 5 (lower is better)
Translates to: SQSPPQRRRALHPLR*PSLWCTKVGPLCCT
Trigger: TGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCGTCGCCTTTGTGGTGGACTTTGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp TCTGTGTCTGAGCTTGCATCCTTAGTCGGCATGGCCTTTTGGCTCTaGGAGAGGTCACTTCTGGCCAACAAGTCTGTGGCTGGCTGTAAG +
Preference number: 5 (lower is better)
Translates to: SVSELASLVGMAFWL*ERSLLANKSVAGCK
Trigger: CTTACAGCCAGCCACAGACTTGTTGGCCAGAAGTGACCTCTCCCAGAGCCAAAAGGCCATGCCGACTAAGGATGCAAGCTCAGACACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp AAGTCTGTGGCTGGCTGTAAGCTGTCTTCCGTTCCACTTGGAGAGTaGTCCATGTCACTTTCTCTGGGAAGTTTGCCACTGGGGACATGG +
Preference number: 5 (lower is better)
Translates to: KSVAGCKLSSVPLGE*SMSLSLGSLPLGTW
Trigger: CCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAACGGAAGACAGCTTACAGCCAGCCACAGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp CACATTTCGTACATCTTTCTTCGCTTGCGTGTGCGCATGGTTCTCTaGATGGCCGGCACTTTGTTGGAAGCAGACCTCTTTAGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: HISYIFLRLRVRMVL*MAGTLLEADLFSGG
Trigger: CCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTACGAAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp ATTCTCCTAGCCCTTCGGTGGGCTCTTGAGTGGAGCTACAAGGATTaGTTAGGTTGGCTACATCAAGAAATCTCTGCTGGACCAGGGGCG +
Preference number: 5 (lower is better)
Translates to: ILLALRWALEWSYKD*LGWLHQEISAGPGA
Trigger: CGCCCCTGGTCCAGCAGAGATTTCTTGATGTAGCCAACCTAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GGGTTCTCAGAGATCCACGAAGGGGATTTGTGGCCATCTTCGTGCTaGGTATTCTGGGAAATGTTCTCTTGCTGTGGGTTGGCCGTAGGT +
Preference number: 5 (lower is better)
Translates to: GFSEIHEGDLWPSSC*VFWEMFSCCGLAVG
Trigger: ACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTCTGAGAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GTGAATTCAGGTGCATTTCTAGAGCTCGGGCATTGGAAAAGCTCTTaGTGCATTGTGGGAAGGGGCACAGGCTGGAAACCTGATGCGAGT +
Preference number: 5 (lower is better)
Translates to: VNSGAFLELGHWKSS*CIVGRGTGWKPDAS
Trigger: ACTCGCATCAGGTTTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp TTTCGTACATCTTTCTTCGCTTGCGTGTGCGCATGGTTCTCTGCATaGCCGGCACTTTGTTGGAAGCAGACCTCTTTAGCGGAGGGTCAT +
Preference number: 5 (lower is better)
Translates to: FRTSFFACVCAWFSA*PALCWKQTSLAEGH
Trigger: ATGACCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTACGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GGAAGATGTCGCATCTTGGGTGGTAGCATTCTCCTAGCCCTTCGGTaGGCTCTTGAGTGGAGCTACAAGGATTGCTTAGGTTGGCTACAT +
Preference number: 5 (lower is better)
Translates to: GRCRILGGSILLALR*ALEWSYKDCLGWLH
Trigger: ATGTAGCCAACCTAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAGAATGCTACCACCCAAGATGCGACATCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp GGGGCACAGGCTGGAAACCTGATGCGAGTTGTCTTCATTTTCTTCTaGCACTGGAGCAGCTTCTCGTTGCCTCCCACTACAGTAGTACAT +
Preference number: 5 (lower is better)
Translates to: GAQAGNLMRVVFIFF*HWSSFSLPPTTVVH
Trigger: ATGTACTACTGTAGTGGGAGGCAACGAGAAGCTGCTCCAGTGTCAGAAGAAAATGAAGACAACTCGCATCAGGTTTCCAGCCTGTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp GAGGAAGAGTTGAGTCTTTTTCTCACACTTGTCCAGCTCTGTGTCTaGGCTTGCATCCTTAGTCGGCATGGCCTTTTGGCTCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: EEELSLFLTLVQLCV*ACILSRHGLLALGE
Trigger: CTCTCCCAGAGCCAAAAGGCCATGCCGACTAAGGATGCAAGCTCAGACACAGAGCTGGACAAGTGTGAGAAAAAGACTCAACTCTTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp AATTCAGGTGCATTTCTAGAGCTCGGGCATTGGAAAAGCTCTTGGTaGATTGTGGGAAGGGGCACAGGCTGGAAACCTGATGCGAGTTGT +
Preference number: 5 (lower is better)
Translates to: NSGAFLELGHWKSSW*IVGRGTGWKPDASC
Trigger: ACAACTCGCATCAGGTTTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp AATGGGTTCTCAGAGATCCACGAAGGGGATTTGTGGCCATCTTCGTaGTGGGTATTCTGGGAAATGTTCTCTTGCTGTGGGTTGGCCGTA +
Preference number: 5 (lower is better)
Translates to: NGFSEIHEGDLWPSS*WVFWEMFSCCGLAV
Trigger: TACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTCTGAGAACCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp TCACACCACTGTGTGAATTCAGGTGCATTTCTAGAGCTCGGGCATTaGAAAAGCTCTTGGTGCATTGTGGGAAGGGGCACAGGCTGGAAA +
Preference number: 5 (lower is better)
Translates to: SHHCVNSGAFLELGH*KSSWCIVGRGTGWK
Trigger: TTTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCACACAGTGGTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp CAGGTAGGCACATTTCGTACATCTTTCTTCGCTTGCGTGTGCGCATaGTTCTCTGCATGGCCGGCACTTTGTTGGAAGCAGACCTCTTTA +
Preference number: 5 (lower is better)
Translates to: QVGTFRTSFFACVCA*FSAWPALCWKQTSL
Trigger: TAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTACGAAATGTGCCTACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GTGGCCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTTGCTGTaGGTTGGCCGTAGGTCTTTCATCTTGCTTGAGTCCACCATTCAC +
Preference number: 5 (lower is better)
Translates to: VAIFVLGILGNVLLL*VGRRSFILLESTIH
Trigger: GTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GAGATCCACGAAGGGGATTTGTGGCCATCTTCGTGCTGGGTATTCTaGGAAATGTTCTCTTGCTGTGGGTTGGCCGTAGGTCTTTCATCT +
Preference number: 5 (lower is better)
Translates to: EIHEGDLWPSSCWVF*EMFSCCGLAVGLSS
Trigger: AGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp AGAGTTGATGCAGGATGTTTGAAGGAGTGGGTTCTCTGGGTCCGATaGATGAGCGGCTGGGTTAAGAAGGTTTATGGAAGTCTGGCCAGT +
Preference number: 5 (lower is better)
Translates to: RVDAGCLKEWVLWVR*MSGWVKKVYGSLAS
Trigger: ACTGGCCAGACTTCCATAAACCTTCTTAACCCAGCCGCTCATTCATCGGACCCAGAGAACCCACTCCTTCAAACATCCTGCATCAACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp ACACTTTACCATCAAGCTGACCCAGGTCATTACGCTGATGTGCAGTaGCAGGGCAGAAATTCTGCTTGTGCGCCAGATAGTTCTCGACCT +
Preference number: 5 (lower is better)
Translates to: TLYHQADPGHYADVQ*QGRNSACAPDSSRP
Trigger: AGGTCGAGAACTATCTGGCGCACAAGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTAATGACCTGGGTCAGCTTGATGGTAAAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp CCTTCGTTGTGGTGCACCAAAGTTGGCCCCCTTTGCTGTACACAATaGAGTTGTTTTTGCTGTCTTCCACTCCTTGCCATGTCACATCCA +
Preference number: 5 (lower is better)
Translates to: PSLWCTKVGPLCCTQ*SCFCCLPLLAMSHP
Trigger: TGGATGTGACATGGCAAGGAGTGGAAGACAGCAAAAACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp CGGAAACACTTTACCATCAAGCTGACCCAGGTCATTACGCTGATGTaGAGTGACAGGGCAGAAATTCTGCTTGTGCGCCAGATAGTTCTC +
Preference number: 5 (lower is better)
Translates to: RKHFTIKLTQVITLM*SDRAEILLVRQIVL
Trigger: GAGAACTATCTGGCGCACAAGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTAATGACCTGGGTCAGCTTGATGGTAAAGTGTTTCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp GATTTGTGGCCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTTaGTGTGGGTTGGCCGTAGGTCTTTCATCTTGCTTGAGTCCACCA +
Preference number: 5 (lower is better)
Translates to: DLWPSSCWVFWEMFS*CGLAVGLSSCLSPP
Trigger: TGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp GGCCTTTCCCGTTTGGCCCAATCAAATCTAAAACGGTGGAAGAGTTaGTGCAGGATGTTTGAAGGAGTGGGTTCTCTGGGTCCGATGAAT +
Preference number: 5 (lower is better)
Translates to: GLSRLAQSNLKRWKS*CRMFEGVGSLGPMN
Trigger: ATTCATCGGACCCAGAGAACCCACTCCTTCAAACATCCTGCATCAACTCTTCCACCGTTTTAGATTTGATTGGGCCAAACGGGAAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp TGGGAAATGTTCTCTTGCTGTGGGTTGGCCGTAGGTCTTTCATCTTaGTTGAGTCCACCATTCACTATGACCATGCCTCTGTTTTTGGGC +
Preference number: 5 (lower is better)
Translates to: WEMFSCCGLAVGLSS*LSPPFTMTMPLFLG
Trigger: GCCCAAAAACAGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp CTGAGATCTATAGGGACATCCATCTCCAAGCAGGAAACATTGGAATaGGTCGTGTCACACTTGGGAACCGGAACACATTTGTTCATGGCC +
Preference number: 5 (lower is better)
Translates to: LRSIGTSISKQETLE*VVSHLGTGTHLFMA
Trigger: GGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTCCTGCTTGGAGATGGATGTCCCTATAGATCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACAGTCGGCATGGCCTTTaGGCTCTGGGAGAGGTCACT +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYSRHGL*ALGEVT
Trigger: AGTGACCTCTCCCAGAGCCAAAAGGCCATGCCGACT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp AGTTTTGCTTGTTGGCTGCAGGCTGGATCTCTGGTCTCTGATTGGTaGGGAAGAGTTGAGTCTTTTTCTCACACTTGTCCAGCTCTGTGT +
Preference number: 5 (lower is better)
Translates to: SFACWLQAGSLVSDW*GRVESFSHTCPALC
Trigger: ACACAGAGCTGGACAAGTGTGAGAAAAAGACTCAACTCTTCCTCACCAATCAGAGACCAGAGATCCAGCCTGCAGCCAACAAGCAAAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp GGGCAACAATGGCAGAGAATCTTTCTTGGGTACGGCACACCCATTTaGGGAGGCCTGGCCTTTAGGAGATTCATTTTCTGTATTTGTGCT +
Preference number: 5 (lower is better)
Translates to: GQQWQRIFLGYGTPI*GGLAFRRFIFCICA
Trigger: AGCACAAATACAGAAAATGAATCTCCTAAAGGCCAGGCCTCCTCAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCATTGTTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp TCATTTGCAGCTAATGGGTTCTCAGAGATCCACGAAGGGGATTTGTaGCCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTTGCTGT +
Preference number: 5 (lower is better)
Translates to: SFAANGFSEIHEGDL*PSSCWVFWEMFSCC
Trigger: ACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTCTGAGAACCCATTAGCTGCAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACCTGAGATGGCCTTCGTaGTGGTGCACCAAAGTTGGC +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYLRWPS*WCTKVG
Trigger: GCCAACTTTGGTGCACCACAACGAAGGCCATCTCAG...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACCTTTCTCTGGGAAGTTaGCCACTGGGGACATGGAGC +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYLSLGS*PLGTWS
Trigger: GCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAG...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACATCCACGAAGGGGATTaGTGGCCATCTTCGTGCTGG +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYIHEGD*WPSSCW
Trigger: CCAGCACGAAGATGGCCACAAATCCCCTTCGTGGAT...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp CATCCATCTCCAAGCAGGAAACATTGGAATGGGTCGTGTCACACTTaGGAACCGGAACACATTTGTTCATGGCCAATGATGTTTCCAAGT +
Preference number: 5 (lower is better)
Translates to: HPSPSRKHWNGSCHT*EPEHICSWPMMFPS
Trigger: ACTTGGAAACATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTCCTGCTTGGAGATGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp CATGTTTCTTTCAAAGCTGACTTCAGGGCTGCTCCGTTCACTTTCTaGATTCGGAAACACTTTACCATCAAGCTGACCCAGGTCATTACG +
Preference number: 5 (lower is better)
Translates to: HVSFKADFRAAPFTF*IRKHFTIKLTQVIT
Trigger: CGTAATGACCTGGGTCAGCTTGATGGTAAAGTGTTTCCGAATCCAGAAAGTGAACGGAGCAGCCCTGAAGTCAGCTTTGAAAGAAACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGGTACATCAAATGGGCTaGCAGGTTCCGCTCGCTCCG +
Preference number: 5 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKVHQMG*QVPLAP
Trigger: CGGAGCGAGCGGAACCTGCAAGCCCATTTGATGTAC...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGGCATCGGAAGGCGGCTaGAGTGAGATGCGAGAACAG +
Preference number: 5 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKASEGG*SEMREQ
Trigger: CTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATGC...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAAGTCGGCATGGCCTTTaGGCTCTGGGAGAGGTCACT +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSSRHGL*ALGEVT
Trigger: AGTGACCTCTCCCAGAGCCAAAAGGCCATGCCGACT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTGCATGGCCGGCACTTaGTTGGAAGCAGACCTCTTT +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYCMAGT*LEADLF
Trigger: AAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCAAAAGGGCCCCAGGTaGTTCCCACCGGAAGTTGCT +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCQKGPR*FPPEVA
Trigger: AGCAACTTCCGGTGGGAACAACCTGGGGCCCTTTTG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACCAAAGTTGGCCCCCTTaGCTGTACACAATGCAGTTG +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYQSWPP*LYTMQL
Trigger: CAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTG...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTCTAGAGCTCGGGCATaGGAAAAGCTCTTGGTGCAT +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYSRARA*EKLLVH
Trigger: ATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGGAAACTCAGGGGATTaGGCCATCTGCTGCCATCTG +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVGNSGD*AICCHL
Trigger: CAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTCC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGGAAACTCAGGGGATTaGGCCATCTGCTGCCATCTG +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSGNSGD*AICCHL
Trigger: CAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTCC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTACATCTTTCTTCGCTaGCGTGTGCGCATGGTTCTC +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYYIFLR*RVRMVL
Trigger: GAGAACCATGCGCACACGCAAGCGAAGAAAGATGTA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTTCTCTTGCTGTGGGTaGGCCGTAGGTCTTTCATCT +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYFSCCG*AVGLSS
Trigger: AGATGAAAGACCTACGGCCAACCCACAGCAAGAGAA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACTGGGAAATGTTCTCTaGCTGTGGGTTGGCCGTAGG +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSLGNVL*LWVGRR
Trigger: CCTACGGCCAACCCACAGCAAGAGAACATTTCCCAG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAATCCACGAAGGGGATTaGTGGCCATCTTCGTGCTGG +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSIHEGD*WPSSCW
Trigger: CCAGCACGAAGATGGCCACAAATCCCCTTCGTGGAT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GACGTCAGTGTTGTGGATGACAAGAGAACTGGCGATATAATCGCTTaGCTTTATCCCATAGTATGGAGAAAGTTGGTCAGCTCCTTTTGT +
Preference number: 5 (lower is better)
Translates to: DVSVVDDKRTGDIIA*LYPIVWRKLVSSFC
Trigger: ACAAAAGGAGCTGACCAACTTTCTCCATACTATGGGATAAAGCCAAGCGATTATATCGCCAGTTCTCTTGTCATCCACAACACTGACGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCCAGGCTGTCCTGGTTaGTCTGAATGGCTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDPGCPG*SEWLSP
Trigger: TGGGGACAGCCATTCAGACAAACCAGGACAGCCTGG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGTACATCAAATGGGCTaGCAGGTTCCGCTCGCTCCG +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLVHQMG*QVPLAP
Trigger: CGGAGCGAGCGGAACCTGCAAGCCCATTTGATGTAC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGCATTGGAAAAGCTCTaGGTGCATTGTGGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSALEKL*VHCGKG
Trigger: CCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGCATCGGAAGGCGGCTaGAGTGAGATGCGAGAACAG +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIASEGG*SEMREQ
Trigger: CTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATGC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGAGGGTCATGGCGTGTaGCACAGTAATACTGTTTGT +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYEGHGV*HSNTVC
Trigger: ACAAACAGTATTACTGTGCAACACGCCATGACCCTC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp CAGAAACACTTGGAAACTCAGGGGATTTGGCCATCTGCTGCCATCTaGTGCTGCAGTAGTGCTTTTTATGAACTAGATAGTTATCCAAAT +
Preference number: 5 (lower is better)
Translates to: QKHLETQGIWPSAAI*CCSSAFYELDSYPN
Trigger: ATTTGGATAACTATCTAGTTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTCCAAGTGTTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 90 bp GACAAGAGAACTGGCGATATAATCGCTTGGCTTTATCCCATAGTATaGAGAAAGTTGGTCAGCTCCTTTTGTCTTCTTTATTGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: DKRTGDIIAWLYPIV*RKLVSSFCLLYCSR
Trigger: CCTGGAGCAATAAAGAAGACAAAAGGAGCTGACCAACTTTCTCCATACTATGGGATAAAGCCAAGCGATTATATCGCCAGTTCTCTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACAAAGTTGGCCCCCTTaGCTGTACACAATGCAGTTG +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSQSWPP*LYTMQL
Trigger: CAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTTGGAGCAGCTTCTCGTaGCCTCCCACTACAGTAGTA +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCWSSFS*PPTTVV
Trigger: TACTACTGTAGTGGGAGGCAACGAGAAGCTGCTCCA...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGAAAGCTCTTGGTGCATaGTGGGAAGGGGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLKALGA*WEGAQA
Trigger: AGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTATGGCCGGCACTTTGTaGGAAGCAGACCTCTTTAGC +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCMAGTL*EADLFS
Trigger: GCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCAT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGGCAGAGAATCTTTCTaGGGTACGGCACACCCATTT +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVGRESF*GTAHPF
Trigger: AAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGGTCTTTCATCTTGCTaGAGTCCACCATTCACTATG +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYGLSSC*SPPFTM
Trigger: CATAGTGAATGGTGGACTCAAGCAAGATGAAAGACC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCTGGGAAATGTTCTCTaGCTGTGGGTTGGCCGTAGG +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDLGNVL*LWVGRR
Trigger: CCTACGGCCAACCCACAGCAAGAGAACATTTCCCAG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGTTCCCACCGGAAGTaGCTGCCGACTCTGAATCTT +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDCSHRK*LPTLNL
Trigger: AAGATTCAGAGTCGGCAGCAACTTCCGGTGGGAACA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTGGAGCAGCTTCTCGTaGCCTCCCACTACAGTAGTA +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLWSSFS*PPTTVV
Trigger: TACTACTGTAGTGGGAGGCAACGAGAAGCTGCTCCA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAATGCGAGAACAGGTGTaGGTGGAAGTTGATCACAGA +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSMREQV*VEVDHR
Trigger: TCTGTGATCAACTTCCACCAACACCTGTTCTCGCAT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTGTGTAAGAGAAGTTTaGCTTGTTGGCTGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDCVREV*LVGCRL
Trigger: CAGCCTGCAGCCAACAAGCAAAACTTCTCTTACACA...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGAGGGTCATGGCGTGTaGCACAGTAATACTGTTTGT +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSEGHGV*HSNTVC
Trigger: ACAAACAGTATTACTGTGCAACACGCCATGACCCTC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTATGGCCGGCACTTTGTaGGAAGCAGACCTCTTTAGC +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIMAGTL*EADLFS
Trigger: GCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCAT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTGCATGGCCGGCACTTaGTTGGAAGCAGACCTCTTT +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLCMAGT*LEADLF
Trigger: AAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAGTGGAGCTACAAGGATaGCTTAGGTTGGCTACATCA +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSVELQG*LRLATS
Trigger: TGATGTAGCCAACCTAAGCAATCCTTGTAGCTCCAC...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTTATTGAAGCTGATCTaGCACACTGTGCACTCGTGG +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVLLKLI*HTVHSW
Trigger: CCACGAGTGCACAGTGTGCAAGATCAGCTTCAATAA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGAAGACTTTCAGGCCTaGCAAGGTTGCCAAGTGGGA +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIEDFQA*QGCQVG
Trigger: TCCCACTTGGCAACCTTGCAAGGCCTGAAAGTCTTC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGAAGACTTTCAGGCCTaGCAAGGTTGCCAAGTGGGA +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDEDFQA*QGCQVG
Trigger: TCCCACTTGGCAACCTTGCAAGGCCTGAAAGTCTTC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGTGTTCGACGTCAGTGTaGTGGATGACAAGAGAACTG +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVCSTSV*WMTREL
Trigger: CAGTTCTCTTGTCATCCACAACACTGACGTCGAACA...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCACGTAGGTCTTTCATCTaGCTTGAGTCCACCATTCAC +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSRRSFI*LESTIH
Trigger: GTGAATGGTGGACTCAAGCAAGATGAAAGACCTACG...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp AAACACTTGGAAACTCAGGGGATTTGGCCATCTGCTGCCATCTGCTaGTGCAGTAGTGCTTTTTATGAACTAGATAGTTATCCAAATTAT +
Preference number: 5 (lower is better)
Translates to: KHLETQGIWPSAAIC*CSSAFYELDSYPNY
Trigger: ATAATTTGGATAACTATCTAGTTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTCCAAGTGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACGTCTTCAAGGAATTATaGTTCAAGTCCATCTTCCCA +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYVFKEL*FKSIFP
Trigger: TGGGAAGATGGACTTGAACAATAATTCCTTGAAGAC...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS-3UTR CAA 90 bp AGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACTAAGACAATGCAGTTGTTTTaGCTGTCTTCCACTCCTTGC +
Preference number: 5 (lower is better)
Translates to: RKWTEIYGYIRMQSLVTKTMQLF*LSSTPC
Trigger: GCAAGGAGTGGAAGACAGCAAAAACAACTGCATTGT...CTTAGTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGCAGATGCCACAGGACTaGCAAGGGAATATATCCTTA +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVQMPQD*QGNISL
Trigger: TAAGGATATATTCCCTTGCAAGTCCTGTGGCATCTG...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTCTAGAGCTCGGGCATaGGAAAAGCTCTTGGTGCAT +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLSRARA*EKLLVH
Trigger: ATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTATGCGAGAACAGGTGTaGGTGGAAGTTGATCACAGA +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCMREQV*VEVDHR
Trigger: TCTGTGATCAACTTCCACCAACACCTGTTCTCGCAT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGAGAAGTTTTGCTTGTaGGCTGCAGGCTGGATCTCT +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDEKFCL*AAGWIS
Trigger: AGAGATCCAGCCTGCAGCCAACAAGCAAAACTTCTC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGACGACCATCGTGATATCTaGGGGAAAAGCAAACTGAGA +
Preference number: 5 (lower is better)
Translates to: FEKMDRNIRLHTNAKPSDDHRDI*GKSKLR
Trigger: TCTCAGTTTGCTTTTCCCCAAGATATCACGATGGTC...GTCACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTACATCTTTCTTCGCTaGCGTGTGCGCATGGTTCTC +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLYIFLR*RVRMVL
Trigger: GAGAACCATGCGCACACGCAAGCGAAGAAAGATGTA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTGTGGAGCTACAAGGATaGCTTAGGTTGGCTACATCA +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCVELQG*LRLATS
Trigger: TGATGTAGCCAACCTAAGCAATCCTTGTAGCTCCAC...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGGAAGATGTCGCATCTaGGGTGGTAGCATTCTCCTA +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIGRCRI*GGSILL
Trigger: TAGGAGAATGCTACCACCCAAGATGCGACATCTTCC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGGAAGATGTCGCATCTaGGGTGGTAGCATTCTCCTA +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDGRCRI*GGSILL
Trigger: TAGGAGAATGCTACCACCCAAGATGCGACATCTTCC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GCAAAGGTTGAAAAATTGAGACAGGGCTGCATCGGCGAAAGAAAATACAAGTACTGCGATAAACACTTTTaGCTGAGATCTATAGGGACA +
Preference number: 5 (lower is better)
Translates to: AKVEKLRQGCIGERKYKYCDKHF*LRSIGT
Trigger: TGTCCCTATAGATCTCAGCAAAAAGTGTTTATCGCA...GTACTTGTATTTTCTTTCGCCGATGCAGCCCTGTCTCAATTTTTCAACCTTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTGGCAGAGAATCTTTCTaGGGTACGGCACACCCATTT +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIGRESF*GTAHPF
Trigger: AAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCC...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTACCATGCCTCTGTTTTaGGGCAACAATGGCAGAGAA +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCTMPLF*GNNGRE
Trigger: TTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGGT...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTGGAGCCTGATTATCCAAGAATTGAAATCTTAAGGCGAACTTATAGCATGTGTCGTAGGTCTTTCATCTaGCTTGAGTCCACCATTCAC +
Preference number: 5 (lower is better)
Translates to: LEPDYPRIEILRRTYSMCRRSFI*LESTIH
Trigger: GTGAATGGTGGACTCAAGCAAGATGAAAGACCTACG...ACACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTTCTCTTGCTGTGGGTaGGCCGTAGGTCTTTCATCT +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIFSCCG*AVGLSS
Trigger: AGATGAAAGACCTACGGCCAACCCACAGCAAGAGAA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 90 bp ATTCATTTTCTGTATTTGTGCTTTGTTCGACGTCAGTGTTGTGGATaGCAAGAGAACTGGCGATATAATCGCTTGGCTTTATCCCATAGT +
Preference number: 5 (lower is better)
Translates to: IHFLYLCFVRRQCCG*QENWRYNRLALSHS
Trigger: ACTATGGGATAAAGCCAAGCGATTATATCGCCAGTTCTCTTGTCATCCACAACACTGACGTCGAACAAAGCACAAATACAGAAAATGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 90 bp AAGGTTGCCAAGTGGGATGAAAACAAATTTCCGTTGGGAGATGGTTaGTTTGGATTCCCATTCTTCTCACATTTGATCATGTTTCTTTCA +
Preference number: 5 (lower is better)
Translates to: KVAKWDENKFPLGDG*FGFPFFSHLIMFLS
Trigger: TGAAAGAAACATGATCAAATGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCAACGGAAATTTGTTTTCATCCCACTTGGCAACCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTAGGTGTTGGTGGAAGTaGATCACAGAATCAGCAGTG +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIRCWWK*ITESAV
Trigger: CACTGCTGATTCTGTGATCAACTTCCACCAACACCT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTGTGTAAGAGAAGTTTaGCTTGTTGGCTGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLCVREV*LVGCRL
Trigger: CAGCCTGCAGCCAACAAGCAAAACTTCTCTTACACA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTTATTGAAGCTGATCTaGCACACTGTGCACTCGTGG +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDLLKLI*HTVHSW
Trigger: CCACGAGTGCACAGTGTGCAAGATCAGCTTCAATAA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTTGGGAGATGGTTGCTTaGGATTCCCATTCTTCTCAC +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIWEMVA*DSHSSH
Trigger: GTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCA...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTGGGAGATGGTTGCTTaGGATTCCCATTCTTCTCAC +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLWEMVA*DSHSSH
Trigger: GTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGGAAAACAAATTTCCGTaGGGAGATGGTTGCTTTGGA +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVENKFP*GDGCFG
Trigger: TCCAAAGCAACCATCTCCCAACGGAAATTTGTTTTC...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGTTCGACGTCAGTGTaGTGGATGACAAGAGAACTG +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDCSTSV*WMTREL
Trigger: CAGTTCTCTTGTCATCCACAACACTGACGTCGAACA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACCATGCCTCTGTTTTaGGGCAACAATGGCAGAGAA +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSITMPLF*GNNGRE
Trigger: TTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGGT...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GTTCGATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTCAGATGCCACAGGACTaGCAAGGGAATATATCCTTA +
Preference number: 5 (lower is better)
Translates to: VRFRLCLSKDKTGEYYSIQMPQD*QGNISL
Trigger: TAAGGATATATTCCCTTGCAAGTCCTGTGGCATCTG...AATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGATTGGTGAGGAAGAGTaGAGTCTTTTTCTCACACTT +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVIGEEE*SLFLTL
Trigger: AAGTGTGAGAAAAAGACTCAACTCTTCCTCACCAAT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGACCATCGTGATATCTaGGGGAAAAGCAAACTGAGA +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLDHRDI*GKSKLR
Trigger: TCTCAGTTTGCTTTTCCCCAAGATATCACGATGGTC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAATAGTATGGAGAAAGTaGGTCAGCTCCTTTTGTCTT +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSIVWRK*VSSFCL
Trigger: AAGACAAAAGGAGCTGACCAACTTTCTCCATACTAT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TGTTTGAGAAAATGGACAGAAATATACGGCTACATACGAATGCAAAGCCTAGTGATAGTATGGAGAAAGTaGGTCAGCTCCTTTTGTCTT +
Preference number: 5 (lower is better)
Translates to: CLRKWTEIYGYIRMQSLVIVWRK*VSSFCL
Trigger: AAGACAAAAGGAGCTGACCAACTTTCTCCATACTAT...CACTAGGCTTTGCATTCGTATGTAGCCGTATATTTCTGTCCATTTTCTCAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGGGTCTTTCATCTTGCTaGAGTCCACCATTCACTATG +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLGLSSC*SPPFTM
Trigger: CATAGTGAATGGTGGACTCAAGCAAGATGAAAGACC...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACCAAGGATTGCTTAGGTaGGCTACATCAAGAAATCTC +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDQGLLR*ATSRNL
Trigger: GAGATTTCTTGATGTAGCCAACCTAAGCAATCCTTG...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACGAAAACAAATTTCCGTaGGGAGATGGTTGCTTTGGA +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDENKFP*GDGCFG
Trigger: TCCAAAGCAACCATCTCCCAACGGAAATTTGTTTTC...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTCCAGGGTAAAGGCATaGGGGAAGAAACAAATGTTT +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDSRVKA*GKKQMF
Trigger: AAACATTTGTTTCTTCCCCAATGCCTTTACCCTGGA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGTCCAGGGTAAAGGCATaGGGGAAGAAACAAATGTTT +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLSRVKA*GKKQMF
Trigger: AAACATTTGTTTCTTCCCCAATGCCTTTACCCTGGA...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp AAATTCATACTTGCAGCATTGAGTTTAGGGGTTCGATTTAGACTGTGCCTTTCAATTCATTTTCTGTATTaGTGCTTTGTTCGACGTCAG +
Preference number: 5 (lower is better)
Translates to: KFILAALSLGVRFRLCLSIHFLY*CFVRRQ
Trigger: CTGACGTCGAACAAAGCACAAATACAGAAAATGAAT...TGAAAGGCACAGTCTAAATCGAACCCCTAAACTCAATGCTGCAAGTATGAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp GATTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGATTGGTGAGGAAGAGTaGAGTCTTTTTCTCACACTT +
Preference number: 5 (lower is better)
Translates to: DLDCAFQKIKLVNTTPLLIGEEE*SLFLTL
Trigger: AAGTGTGAGAAAAAGACTCAACTCTTCCTCACCAAT...CAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS-3UTR CAA 90 bp TTTAGACTGTGCCTTTCAAAAGATAAAACTGGTGAATACTACTCCATTACTGACTGCGATAAACACTTTTaGCTGAGATCTATAGGGACA +
Preference number: 5 (lower is better)
Translates to: FRLCLSKDKTGEYYSITDCDKHF*LRSIGT
Trigger: TGTCCCTATAGATCTCAGCAAAAAGTGTTTATCGCA...GTCAGTAATGGAGTAGTATTCACCAGTTTTATCTTTTGAAAGGCACAGTCTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GACAGGAAAGGTCCCACAGGGAAAGAGGGCCCGATGTaGGGTTGCACTGGAGATGAGGCGAGTCTGGGACTG +
Preference number: 6 (lower is better)
Translates to: DRKGPTGKEGPM*GCTGDEASLGL
Trigger: CAGTCCCAGACTCGCCTCATCTCCAGTGCAACCCAACATCGGGCCCTCTTTCCCTGTGGGACCTTTCCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CTTCGCTTGCGTGTGCGCATGGTTCTCTGCATGGCCGGCACTTTGTaGGAAGCAGACCTCTTTAGCGGAGGGTCATGGCGTGTTGCACAG +
Preference number: 6 (lower is better)
Translates to: LRLRVRMVLCMAGTL*EADLFSGGSWRVAQ
Trigger: CTGTGCAACACGCCATGACCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp CCACCACAAAGGCGACGAGCTCTTCACCCTCTGAGATaGCCTTCGTTGTGGTGCACCAAAGTTGGCCCCCTT +
Preference number: 6 (lower is better)
Translates to: PPQRRRALHPLR*PSLWCTKVGPL
Trigger: AAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCGTCGCCTTTGTGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CGTGTGCGCATGGTTCTCTGCATGGCCGGCACTTTGTaGGAAGCAGACCTCTTTAGCGGAGGGTCATGGCGT +
Preference number: 6 (lower is better)
Translates to: RVRMVLCMAGTL*EADLFSGGSWR
Trigger: ACGCCATGACCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TCCGTTCCACTTGGAGAGTGCTCCATGTCACTTTCTCTGGGAAGTTaGCCACTGGGGACATGGAGCTCCTGGTGCTGCAGTAGCTCCCTC +
Preference number: 6 (lower is better)
Translates to: SVPLGECSMSLSLGS*PLGTWSSWCCSSSL
Trigger: GAGGGAGCTACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAACGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp AGTGCTCCATGTCACTTTCTCTGGGAAGTTTGCCACTaGGGACATGGAGCTCCTGGTGCTGCAGTAGCTCCC +
Preference number: 6 (lower is better)
Translates to: SAPCHFLWEVCH*GHGAPGAAVAP
Trigger: GGGAGCTACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp AGGCGACGAGCTCTTCACCCTCTGAGATGGCCTTCGTaGTGGTGCACCAAAGTTGGCCCCCTTTGCTGTACA +
Preference number: 6 (lower is better)
Translates to: RRRALHPLRWPS*WCTKVGPLCCT
Trigger: TGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCGTCGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp TTGCGTGTGCGCATGGTTCTCTGCATGGCCGGCACTTaGTTGGAAGCAGACCTCTTTAGCGGAGGGTCATGG +
Preference number: 6 (lower is better)
Translates to: LRVRMVLCMAGT*LEADLFSGGSW
Trigger: CCATGACCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CCACCACAAAGGCGACGAGCTCTTCACCCTCTGAGATGGCCTTCGTaGTGGTGCACCAAAGTTGGCCCCCTTTGCTGTACACAATGCAGT +
Preference number: 6 (lower is better)
Translates to: PPQRRRALHPLRWPS*WCTKVGPLCCTQCS
Trigger: ACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCGTCGCCTTTGTGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TTTCTTCGCTTGCGTGTGCGCATGGTTCTCTGCATGGCCGGCACTTaGTTGGAAGCAGACCTCTTTAGCGGAGGGTCATGGCGTGTTGCA +
Preference number: 6 (lower is better)
Translates to: FLRLRVRMVLCMAGT*LEADLFSGGSWRVA
Trigger: TGCAACACGCCATGACCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp GGAAGCTTCCCTCCAGTGGAAAGTCGCCTTTCGAGATaGCTTCGGCTTCCTCCACCGGACACTCTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: GSFPPVESRLSR*LRLPPPDTLLP
Trigger: AGGAAGAAGAGTGTCCGGTGGAGGAAGCCGAAGTCATCTCGAAAGGCGACTTTCCACTGGAGGGAAGCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS TCA 72 bp AAAGTCCACCACAAAGGCGACGAGCTCTTCACCCTCTaGGATGGCCTTCGTTGTGGTGCACCAAAGTTGGCC +
Preference number: 6 (lower is better)
Translates to: KVHHKGDELFTL*DGLRCGAPKLA
Trigger: GGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCGTCGCCTTTGTGGTGGACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp AGGCGGGCAGGGTACATCCCTTCGGTGAGAGTCATGTaGCTAGCAGCTTGTAGCCTTGAGTCAAAGTCCACC +
Preference number: 6 (lower is better)
Translates to: RRAGYIPSVRVM*LAACSLESKST
Trigger: GGTGGACTTTGACTCAAGGCTACAAGCTGCTAGTCACATGACTCTCACCGAAGGGATGTACCCTGCCCGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp CGAGCTCTTCACCCTCTGAGATGGCCTTCGTTGTGGTaGACCAAAGTTGGCCCCCTTTGCTGTACACAATGC +
Preference number: 6 (lower is better)
Translates to: RALHPLRWPSLW*TKVGPLCCTQC
Trigger: GCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp CGACGAGCTCTTCACCCTCTGAGATGGCCTTCGTTGTaGTGCACCAAAGTTGGCCCCCTTTGCTGTACACAA +
Preference number: 6 (lower is better)
Translates to: RRALHPLRWPSL*CTKVGPLCCTQ
Trigger: TTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCATCTCAGAGGGTGAAGAGCTCGTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp TCGCATAGCCGGCAGTATTTTCCACTGCTGGGAGCCTaGCTGGCGCCATTCACACCTTTTGCTATGCTAGAC +
Preference number: 6 (lower is better)
Translates to: SHSRQYFPLLGA*LAPFTPFAMLD
Trigger: GTCTAGCATAGCAAAAGGTGTGAATGGCGCCAGCCAGGCTCCCAGCAGTGGAAAATACTGCCGGCTATGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CCCAGCAAAAGGGCCCCAGGTTGTTCCCACCGGAAGTaGCTGCCGACTCTGAATCTTCCTTTCTCCATCTCT +
Preference number: 6 (lower is better)
Translates to: PSKRAPGCSHRK*LPTLNLPFSIS
Trigger: AGAGATGGAGAAAGGAAGATTCAGAGTCGGCAGCAACTTCCGGTGGGAACAACCTGGGGCCCTTTTGCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS GCA 72 bp TTGGAGAGTGCTCCATGTCACTTTCTCTGGGAAGTTTaGCACTGGGGACATGGAGCTCCTGGTGCTGCAGTA +
Preference number: 6 (lower is better)
Translates to: LESAPCHFLWEV*HWGHGAPGAAV
Trigger: TACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp GCTCAGGTAGGCACATTTCGTACATCTTTCTTCGCTTaGGTGTGCGCATGGTTCTCTGCATGGCCGGCACTT +
Preference number: 6 (lower is better)
Translates to: AQVGTFRTSFFA*VCAWFSAWPAL
Trigger: AAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTACGAAATGTGCCTACCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp ACTGCTGGGAGCCTGGCTGGCGCCATTCACACCTTTTaGTATGCTAGACAACTGTTCTTCTGCGCAGGGAAT +
Preference number: 6 (lower is better)
Translates to: TAGSLAGAIHTF*YARQLFFCAGN
Trigger: ATTCCCTGCGCAGAAGAACAGTTGTCTAGCATAGCAAAAGGTGTGAATGGCGCCAGCCAGGCTCCCAGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp GGTGCATTTCTAGAGCTCGGGCATTGGAAAAGCTCTTaGTGCATTGTGGGAAGGGGCACAGGCTGGAAACCT +
Preference number: 6 (lower is better)
Translates to: GAFLELGHWKSS*CIVGRGTGWKP
Trigger: AGGTTTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp GTGTCTGAGCTTGCATCCTTAGTCGGCATGGCCTTTTaGCTCTGGGAGAGGTCACTTCTGGCCAACAAGTCT +
Preference number: 6 (lower is better)
Translates to: VSELASLVGMAF*LWERSLLANKS
Trigger: AGACTTGTTGGCCAGAAGTGACCTCTCCCAGAGCCAAAAGGCCATGCCGACTAAGGATGCAAGCTCAGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp TCTTTCTTCGCTTGCGTGTGCGCATGGTTCTCTGCATaGCCGGCACTTTGTTGGAAGCAGACCTCTTTAGCG +
Preference number: 6 (lower is better)
Translates to: SFFACVCAWFSA*PALCWKQTSLA
Trigger: CGCTAAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp CGCATCTTGGGTGGTAGCATTCTCCTAGCCCTTCGGTaGGCTCTTGAGTGGAGCTACAAGGATTGCTTAGGT +
Preference number: 6 (lower is better)
Translates to: RILGGSILLALR*ALEWSYKDCLG
Trigger: ACCTAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAGAATGCTACCACCCAAGATGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp TGTTCAAGTCCATCTTCCCAGCAAAAGGGCCCCAGGTaGTTCCCACCGGAAGTTGCTGCCGACTCTGAATCT +
Preference number: 6 (lower is better)
Translates to: CSSPSSQQKGPR*FPPEVAADSES
Trigger: AGATTCAGAGTCGGCAGCAACTTCCGGTGGGAACAACCTGGGGCCCTTTTGCTGGGAAGATGGACTTGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS CAA 72 bp AGGTGCATTTCTAGAGCTCGGGCATTGGAAAAGCTCTaGGTGCATTGTGGGAAGGGGCACAGGCTGGAAACC +
Preference number: 6 (lower is better)
Translates to: RCISRARALEKL*VHCGKGHRLET
Trigger: GGTTTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp TGCTCAGGTAGGCACATTTCGTACATCTTTCTTCGCTaGCGTGTGCGCATGGTTCTCTGCATGGCCGGCACT +
Preference number: 6 (lower is better)
Translates to: CSGRHISYIFLR*RVRMVLCMAGT
Trigger: AGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTACGAAATGTGCCTACCTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp GTCCATCTTCCCAGCAAAAGGGCCCCAGGTTGTTCCCACCGGAAGTaGCTGCCGACTCTGAATCTTCCTTTCTCCATCTCTCTGAAACAC +
Preference number: 6 (lower is better)
Translates to: VHLPSKRAPGCSHRK*LPTLNLPFSISLKH
Trigger: GTGTTTCAGAGAGATGGAGAAAGGAAGATTCAGAGTCGGCAGCAACTTCCGGTGGGAACAACCTGGGGCCCTTTTGCTGGGAAGATGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS TCA 72 bp AAGCCAAAATGGCAGTGGTTGCATCGGAAGGCGGCTTaGGTGAGATGCGAGAACAGGTGTTGGTGGAAGTTG +
Preference number: 6 (lower is better)
Translates to: KPKWQWLHRKAA*VRCENRCWWKL
Trigger: CAACTTCCACCAACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATGCAACCACTGCCATTTTGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp GCATTTCTAGAGCTCGGGCATTGGAAAAGCTCTTGGTaGATTGTGGGAAGGGGCACAGGCTGGAAACCTGAT +
Preference number: 6 (lower is better)
Translates to: AFLELGHWKSSW*IVGRGTGWKPD
Trigger: ATCAGGTTTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp GCTGGCTGTAAGCTGTCTTCCGTTCCACTTGGAGAGTaGTCCATGTCACTTTCTCTGGGAAGTTTGCCACTG +
Preference number: 6 (lower is better)
Translates to: AGCKLSSVPLGE*SMSLSLGSLPL
Trigger: CAGTGGCAAACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAACGGAAGACAGCTTACAGCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp GAAGGGGATTTGTGGCCATCTTCGTGCTGGGTATTCTaGGAAATGTTCTCTTGCTGTGGGTTGGCCGTAGGT +
Preference number: 6 (lower is better)
Translates to: EGDLWPSSCWVF*EMFSCCGLAVG
Trigger: ACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp ACTGAATATCGCATAGCCGGCAGTATTTTCCACTGCTaGGAGCCTGGCTGGCGCCATTCACACCTTTTGCTA +
Preference number: 6 (lower is better)
Translates to: TEYRIAGSIFHC*EPGWRHSHLLL
Trigger: TAGCAAAAGGTGTGAATGGCGCCAGCCAGGCTCCCAGCAGTGGAAAATACTGCCGGCTATGCGATATTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GACAATAGCTGTAGGCAAAATAGAAGCCATGGCAGCTaGCTGAGGAAGCAGCTGAATCGAGTCCAGCAGGCG +
Preference number: 6 (lower is better)
Translates to: DNSCRQNRSHGS*LRKQLNRVQQA
Trigger: CGCCTGCTGGACTCGATTCAGCTGCTTCCTCAGCAAGCTGCCATGGCTTCTATTTTGCCTACAGCTATTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CCTCTGTTTTTGGGCAACAATGGCAGAGAATCTTTCTaGGGTACGGCACACCCATTTGAGGAGGCCTGGCCT +
Preference number: 6 (lower is better)
Translates to: PLFLGNNGRESF*GTAHPFEEAWP
Trigger: AGGCCAGGCCTCCTCAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAACAGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CTGGGTCTGAAAGCCAAAATGGCAGTGGTTGCATCGGAAGGCGGCTaGAGTGAGATGCGAGAACAGGTGTTGGTGGAAGTTGATCACAGA +
Preference number: 6 (lower is better)
Translates to: LGLKAKMAVVASEGG*SEMREQVLVEVDHR
Trigger: TCTGTGATCAACTTCCACCAACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATGCAACCACTGCCATTTTGGCTTTCAGACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TTCACACCACTGTGTGAATTCAGGTGCATTTCTAGAGCTCGGGCATaGGAAAAGCTCTTGGTGCATTGTGGGAAGGGGCACAGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: FTPLCEFRCISRARA*EKLLVHCGKGHRLE
Trigger: TTCCAGCCTGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCACACAGTGGTGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp GGATTTGTGGCCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTaGCTGTGGGTTGGCCGTAGGTCTTTCATCTTGCTTGAGTCCACC +
Preference number: 6 (lower is better)
Translates to: GFVAIFVLGILGNVL*LWVGRRSFILLEST
Trigger: GGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp CATCAAGCTGACCCAGGTCATTACGCTGATGTGCAGTaGCAGGGCAGAAATTCTGCTTGTGCGCCAGATAGT +
Preference number: 6 (lower is better)
Translates to: HQADPGHYADVQ*QGRNSACAPDS
Trigger: ACTATCTGGCGCACAAGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTAATGACCTGGGTCAGCTTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TACATCTTTCTTCGCTTGCGTGTGCGCATGGTTCTCTaGATGGCCGGCACTTTGTTGGAAGCAGACCTCTTT +
Preference number: 6 (lower is better)
Translates to: YIFLRLRVRMVL*MAGTLLEADLF
Trigger: AAAGAGGTCTGCTTCCAACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TTTACCATCAAGCTGACCCAGGTCATTACGCTGATGTaGAGTGACAGGGCAGAAATTCTGCTTGTGCGCCAG +
Preference number: 6 (lower is better)
Translates to: FTIKLTQVITLM*SDRAEILLVRQ
Trigger: CTGGCGCACAAGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTAATGACCTGGGTCAGCTTGATGGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TCAGAGATCCACGAAGGGGATTTGTGGCCATCTTCGTaGTGGGTATTCTGGGAAATGTTCTCTTGCTGTGGG +
Preference number: 6 (lower is better)
Translates to: SEIHEGDLWPSS*WVFWEMFSCCG
Trigger: CCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp GGTAGCATTCTCCTAGCCCTTCGGTGGGCTCTTGAGTaGAGCTACAAGGATTGCTTAGGTTGGCTACATCAA +
Preference number: 6 (lower is better)
Translates to: GSILLALRWALE*SYKDCLGWLHQ
Trigger: TTGATGTAGCCAACCTAAGCAATCCTTGTAGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAGAATGCTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp CTCTGTTTTTGGGCAACAATGGCAGAGAATCTTTCTTaGGTACGGCACACCCATTTGAGGAGGCCTGGCCTT +
Preference number: 6 (lower is better)
Translates to: LCFWATMAENLS*VRHTHLRRPGL
Trigger: AAGGCCAGGCCTCCTCAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAACAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp GAGATCCACGAAGGGGATTTGTGGCCATCTTCGTGCTaGGTATTCTGGGAAATGTTCTCTTGCTGTGGGTTG +
Preference number: 6 (lower is better)
Translates to: EIHEGDLWPSSC*VFWEMFSCCGL
Trigger: CAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CTGTGTGAATTCAGGTGCATTTCTAGAGCTCGGGCATaGGAAAAGCTCTTGGTGCATTGTGGGAAGGGGCAC +
Preference number: 6 (lower is better)
Translates to: LCEFRCISRARA*EKLLVHCGKGH
Trigger: GTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCACACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp TCGGAAGGCGGCTTGAGTGAGATGCGAGAACAGGTGTaGGTGGAAGTTGATCACAGAATCAGCAGTGTAGCT +
Preference number: 6 (lower is better)
Translates to: SEGGLSEMREQV*VEVDHRISSVA
Trigger: AGCTACACTGCTGATTCTGTGATCAACTTCCACCAACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp AAAGCCAAAATGGCAGTGGTTGCATCGGAAGGCGGCTaGAGTGAGATGCGAGAACAGGTGTTGGTGGAAGTT +
Preference number: 6 (lower is better)
Translates to: KAKMAVVASEGG*SEMREQVLVEV
Trigger: AACTTCCACCAACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATGCAACCACTGCCATTTTGGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp AGTCTGTGGCTGGCTGTAAGCTGTCTTCCGTTCCACTaGGAGAGTGCTCCATGTCACTTTCTCTGGGAAGTT +
Preference number: 6 (lower is better)
Translates to: SLWLAVSCLPFH*ESAPCHFLWEV
Trigger: AACTTCCCAGAGAAAGTGACATGGAGCACTCTCCAAGTGGAACGGAAGACAGCTTACAGCCAGCCACAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GCAGCTAATGGGTTCTCAGAGATCCACGAAGGGGATTaGTGGCCATCTTCGTGCTGGGTATTCTGGGAAATG +
Preference number: 6 (lower is better)
Translates to: AANGFSEIHEGD*WPSSCWVFWEM
Trigger: CATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTCTGAGAACCCATTAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp AGGAATTATTGTTCAAGTCCATCTTCCCAGCAAAAGGGCCCCAGGTaGTTCCCACCGGAAGTTGCTGCCGACTCTGAATCTTCCTTTCTC +
Preference number: 6 (lower is better)
Translates to: RNYCSSPSSQQKGPR*FPPEVAADSESSFL
Trigger: GAGAAAGGAAGATTCAGAGTCGGCAGCAACTTCCGGTGGGAACAACCTGGGGCCCTTTTGCTGGGAAGATGGACTTGAACAATAATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS CAA 90 bp GTTGTGGTGCACCAAAGTTGGCCCCCTTTGCTGTACACAATGCAGTaGTTTTTGCTGTCTTCCACTCCTTGCCATGTCACATCCAGAAGC +
Preference number: 6 (lower is better)
Translates to: VVVHQSWPPLLYTMQ*FLLSSTPCHVTSRS
Trigger: GCTTCTGGATGTGACATGGCAAGGAGTGGAAGACAGCAAAAACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp ATGACCATGCCTCTGTTTTTGGGCAACAATGGCAGAGAATCTTTCTaGGGTACGGCACACCCATTTGAGGAGGCCTGGCCTTTAGGAGAT +
Preference number: 6 (lower is better)
Translates to: MTMPLFLGNNGRESF*GTAHPFEEAWPLGD
Trigger: ATCTCCTAAAGGCCAGGCCTCCTCAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGGTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp ACAACTGTTCTTCTGCGCAGGGAATTCCTGGGGAGACATTCTCATTaGCAGCTAATGGGTTCTCAGAGATCCACGAAGGGGATTTGTGGC +
Preference number: 6 (lower is better)
Translates to: TTVLLRREFLGRHSH*QLMGSQRSTKGICG
Trigger: GCCACAAATCCCCTTCGTGGATCTCTGAGAACCCATTAGCTGCAAATGAGAATGTCTCCCCAGGAATTCCCTGCGCAGAAGAACAGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp TTGGTGCATTGTGGGAAGGGGCACAGGCTGGAAACCTaGTGCGAGTTGTCTTCATTTTCTTCTGACACTGGA +
Preference number: 6 (lower is better)
Translates to: LVHCGKGHRLET*CELSSFSSDTG
Trigger: TCCAGTGTCAGAAGAAAATGAAGACAACTCGCATCAGGTTTCCAGCCTGTGCCCCTTCCCACAATGCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp GCAGGATGTTTGAAGGAGTGGGTTCTCTGGGTCCGATaGATGAGCGGCTGGGTTAAGAAGGTTTATGGAAGT +
Preference number: 6 (lower is better)
Translates to: AGCLKEWVLWVR*MSGWVKKVYGS
Trigger: ACTTCCATAAACCTTCTTAACCCAGCCGCTCATTCATCGGACCCAGAGAACCCACTCCTTCAAACATCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TGGTGCACCAAAGTTGGCCCCCTTTGCTGTACACAATaGAGTTGTTTTTGCTGTCTTCCACTCCTTGCCATG +
Preference number: 6 (lower is better)
Translates to: WCTKVGPLCCTQ*SCFCCLPLLAM
Trigger: CATGGCAAGGAGTGGAAGACAGCAAAAACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TGGCCTTCGTTGTGGTGCACCAAAGTTGGCCCCCTTTaGTGTACACAATGCAGTTGTTTTTGCTGTCTTCCA +
Preference number: 6 (lower is better)
Translates to: WPSLWCTKVGPL*CTQCSCFCCLP
Trigger: TGGAAGACAGCAAAAACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAAGGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TTCTCTTGCTGTGGGTTGGCCGTAGGTCTTTCATCTTaGTTGAGTCCACCATTCACTATGACCATGCCTCTG +
Preference number: 6 (lower is better)
Translates to: FSCCGLAVGLSS*LSPPFTMTMPL
Trigger: CAGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp CCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTTaGTGTGGGTTGGCCGTAGGTCTTTCATCTTGCTTG +
Preference number: 6 (lower is better)
Translates to: PSSCWVFWEMFS*CGLAVGLSSCL
Trigger: CAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp TGTGTGAATTCAGGTGCATTTCTAGAGCTCGGGCATTaGAAAAGCTCTTGGTGCATTGTGGGAAGGGGCACA +
Preference number: 6 (lower is better)
Translates to: CVNSGAFLELGH*KSSWCIVGRGT
Trigger: TGTGCCCCTTCCCACAATGCACCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp TTCGTGCTGGGTATTCTGGGAAATGTTCTCTTGCTGTaGGTTGGCCGTAGGTCTTTCATCTTGCTTGAGTCC +
Preference number: 6 (lower is better)
Translates to: FVLGILGNVLLL*VGRRSFILLES
Trigger: GGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GTTCTCTTGCTGTGGGTTGGCCGTAGGTCTTTCATCTaGCTTGAGTCCACCATTCACTATGACCATGCCTCT +
Preference number: 6 (lower is better)
Translates to: VLLLWVGRRSFI*LESTIHYDHAS
Trigger: AGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GCCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTaGCTGTGGGTTGGCCGTAGGTCTTTCATCTTGCTT +
Preference number: 6 (lower is better)
Translates to: AIFVLGILGNVL*LWVGRRSFILL
Trigger: AAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp GCACTTTGTTGGAAGCAGACCTCTTTAGCGGAGGGTCATGGCGTGTaGCACAGTAATACTGTTTGTGGACCATATAGGTTTCATGCCTGC +
Preference number: 6 (lower is better)
Translates to: ALCWKQTSLAEGHGV*HSNTVCGPYRFHAC
Trigger: GCAGGCATGAAACCTATATGGTCCACAAACAGTATTACTGTGCAACACGCCATGACCCTCCGCTAAAGAGGTCTGCTTCCAACAAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CTGGGAAATGTTCTCTTGCTGTGGGTTGGCCGTAGGTCTTTCATCTaGCTTGAGTCCACCATTCACTATGACCATGCCTCTGTTTTTGGG +
Preference number: 6 (lower is better)
Translates to: LGNVLLLWVGRRSFI*LESTIHYDHASVFG
Trigger: CCCAAAAACAGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTTGCTGTGGGTaGGCCGTAGGTCTTTCATCTTGCTTGAGTCCACCATTCACTATG +
Preference number: 6 (lower is better)
Translates to: PSSCWVFWEMFSCCG*AVGLSSCLSPPFTM
Trigger: CATAGTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp TTGAGTCTTTTTCTCACACTTGTCCAGCTCTGTGTCTaGGCTTGCATCCTTAGTCGGCATGGCCTTTTGGCT +
Preference number: 6 (lower is better)
Translates to: LSLFLTLVQLCV*ACILSRHGLLA
Trigger: AGCCAAAAGGCCATGCCGACTAAGGATGCAAGCTCAGACACAGAGCTGGACAAGTGTGAGAAAAAGACTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp TCTTCGCCAAGATCTCTGAAGCCTGAGGGACCATCGTaGTATCTTGGGGAAAAGCAAACTGAGACAGGAAAG +
Preference number: 6 (lower is better)
Translates to: SSPRSLKPEGPS*YLGEKQTETGK
Trigger: CTTTCCTGTCTCAGTTTGCTTTTCCCCAAGATATCACGATGGTCCCTCAGGCTTCAGAGATCTTGGCGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp TGGCAGAGAATCTTTCTTGGGTACGGCACACCCATTTaGGGAGGCCTGGCCTTTAGGAGATTCATTTTCTGT +
Preference number: 6 (lower is better)
Translates to: WQRIFLGYGTPI*GGLAFRRFIFC
Trigger: ACAGAAAATGAATCTCCTAAAGGCCAGGCCTCCTCAAATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp CCAAGCAGGAAACATTGGAATGGGTCGTGTCACACTTaGGAACCGGAACACATTTGTTCATGGCCAATGATG +
Preference number: 6 (lower is better)
Translates to: PSRKHWNGSCHT*EPEHICSWPMM
Trigger: CATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTCCTGCTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp TCGCTGAAGACTTTCAGGCCTTGCAAGGTTGCCAAGTaGGATGAAAACAAATTTCCGTTGGGAGATGGTTGC +
Preference number: 6 (lower is better)
Translates to: SLKTFRPCKVAK*DENKFPLGDGC
Trigger: GCAACCATCTCCCAACGGAAATTTGTTTTCATCCCACTTGGCAACCTTGCAAGGCCTGAAAGTCTTCAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CACCAAAGTTGGCCCCCTTTGCTGTACACAATGCAGTaGTTTTTGCTGTCTTCCACTCCTTGCCATGTCACA +
Preference number: 6 (lower is better)
Translates to: HQSWPPLLYTMQ*FLLSSTPCHVT
Trigger: TGTGACATGGCAAGGAGTGGAAGACAGCAAAAACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GTCGTCACTACTGTTGGAGGTGGGCAACTTTTTGACTaGAGTGGAAAAGTCCTTCTCATGGCCTTTCCCGTT +
Preference number: 6 (lower is better)
Translates to: VVTTVGGGQLFD*SGKVLLMAFPV
Trigger: AACGGGAAAGGCCATGAGAAGGACTTTTCCACTCAAGTCAAAAAGTTGCCCACCTCCAACAGTAGTGACGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GATGCTGTCGTCCGCTCAGACTGCGATAAACACTTTTaGCTGAGATCTATAGGGACATCCATCTCCAAGCAG +
Preference number: 6 (lower is better)
Translates to: DAVVRSDCDKHF*LRSIGTSISKQ
Trigger: CTGCTTGGAGATGGATGTCCCTATAGATCTCAGCAAAAAGTGTTTATCGCAGTCTGAGCGGACGACAGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TCATCTTGCTTGAGTCCACCATTCACTATGACCATGCCTCTGTTTTaGGGCAACAATGGCAGAGAATCTTTCTTGGGTACGGCACACCCA +
Preference number: 6 (lower is better)
Translates to: SSCLSPPFTMTMPLF*GNNGRESFLGTAHP
Trigger: TGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAAGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp GAAATGTTCTCTTGCTGTGGGTTGGCCGTAGGTCTTTCATCTTGCTaGAGTCCACCATTCACTATGACCATGCCTCTGTTTTTGGGCAAC +
Preference number: 6 (lower is better)
Translates to: EMFSCCGLAVGLSSC*SPPFTMTMPLFLGN
Trigger: GTTGCCCAAAAACAGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAAGATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TTCTCATTTGCAGCTAATGGGTTCTCAGAGATCCACGAAGGGGATTaGTGGCCATCTTCGTGCTGGGTATTCTGGGAAATGTTCTCTTGC +
Preference number: 6 (lower is better)
Translates to: FSFAANGFSEIHEGD*WPSSCWVFWEMFSC
Trigger: GCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACAAATCCCCTTCGTGGATCTCTGAGAACCCATTAGCTGCAAATGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp ACATCCATCTCCAAGCAGGAAACATTGGAATGGGTCGTGTCACACTaGGGAACCGGAACACATTTGTTCATGGCCAATGATGTTTCCAAG +
Preference number: 6 (lower is better)
Translates to: TSISKQETLEWVVSH*GTGTHLFMANDVSK
Trigger: CTTGGAAACATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTCCTGCTTGGAGATGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CTCTTAGGAGATGCTGTCGTCCGCTCAGACTGCGATAAACACTTTTaGCTGAGATCTATAGGGACATCCATCTCCAAGCAGGAAACATTG +
Preference number: 6 (lower is better)
Translates to: LLGDAVVRSDCDKHF*LRSIGTSISKQETL
Trigger: CAATGTTTCCTGCTTGGAGATGGATGTCCCTATAGATCTCAGCAAAAAGTGTTTATCGCAGTCTGAGCGGACGACAGCATCTCCTAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp CGTTTGGCCCAATCAAATCTAAAACGGTGGAAGAGTTaGTGCAGGATGTTTGAAGGAGTGGGTTCTCTGGGT +
Preference number: 6 (lower is better)
Translates to: RLAQSNLKRWKS*CRMFEGVGSLG
Trigger: ACCCAGAGAACCCACTCCTTCAAACATCCTGCATCAACTCTTCCACCGTTTTAGATTTGATTGGGCCAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp TCGTCACTACTGTTGGAGGTGGGCAACTTTTTGACTTaGGTGGAAAAGTCCTTCTCATGGCCTTTCCCGTTT +
Preference number: 6 (lower is better)
Translates to: SSLLLEVGNFLT*VEKSFSWPFPF
Trigger: AAACGGGAAAGGCCATGAGAAGGACTTTTCCACTCAAGTCAAAAAGTTGCCCACCTCCAACAGTAGTGACGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp GAAGACTTTCAGGCCTTGCAAGGTTGCCAAGTGGGATaGAAACAAATTTCCGTTGGGAGATGGTTGCTTTGG +
Preference number: 6 (lower is better)
Translates to: EDFQALQGCQVG*KQISVGRWLLW
Trigger: CCAAAGCAACCATCTCCCAACGGAAATTTGTTTTCATCCCACTTGGCAACCTTGCAAGGCCTGAAAGTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp AGTAGCCTCTTAGGAGATGCTGTCGTCCGCTCAGACTaGGATAAACACTTTTTGCTGAGATCTATAGGGACA +
Preference number: 6 (lower is better)
Translates to: SSLLGDAVVRSD*DKHFLLRSIGT
Trigger: TGTCCCTATAGATCTCAGCAAAAAGTGTTTATCGCAGTCTGAGCGGACGACAGCATCTCCTAAGAGGCTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp TCTGAATGGCTGTCCCCATCTGATTCTGCTGGCTCCTaGATTCCTTCGTCATCACCTTTGTTACAAAAGAAC +
Preference number: 6 (lower is better)
Translates to: SEWLSPSDSAGS*IPSSSPLLQKN
Trigger: GTTCTTTTGTAACAAAGGTGATGACGAAGGAATCCAGGAGCCAGCAGAATCAGATGGGGACAGCCATTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053467.6
CDS CAA 72 bp TGGAAGCAGACCTCTTTAGCGGAGGGTCATGGCGTGTaGCACAGTAATACTGTTTGTGGACCATATAGGTTT +
Preference number: 6 (lower is better)
Translates to: WKQTSLAEGHGV*HSNTVCGPYRF
Trigger: AAACCTATATGGTCCACAAACAGTATTACTGTGCAACACGCCATGACCCTCCGCTAAAGAGGTCTGCTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp GAATGGGTCGTGTCACACTTGGGAACCGGAACACATTaGTTCATGGCCAATGATGTTTCCAAGTGCTTAGAG +
Preference number: 6 (lower is better)
Translates to: EWVVSHLGTGTH*FMANDVSKCLE
Trigger: CTCTAAGCACTTGGAAACATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp TCCAAGCAGGAAACATTGGAATGGGTCGTGTCACACTaGGGAACCGGAACACATTTGTTCATGGCCAATGAT +
Preference number: 6 (lower is better)
Translates to: SKQETLEWVVSH*GTGTHLFMAND
Trigger: ATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTCCTGCTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TTTTTGCTGAGATCTATAGGGACATCCATCTCCAAGCAGGAAACATaGGAATGGGTCGTGTCACACTTGGGAACCGGAACACATTTGTTC +
Preference number: 6 (lower is better)
Translates to: FLLRSIGTSISKQET*EWVVSHLGTGTHLF
Trigger: GAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTCCTGCTTGGAGATGGATGTCCCTATAGATCTCAGCAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp ACTCAGGGGATTTGGCCATCTGCTGCCATCTGCTGCTaGAGTAGTGCTTTTTATGAACTAGATAGTTATCCA +
Preference number: 6 (lower is better)
Translates to: TQGIWPSAAICC*SSAFYELDSYP
Trigger: TGGATAACTATCTAGTTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCCTGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TTGGAAACTCAGGGGATTTGGCCATCTGCTGCCATCTaGTGCTGCAGTAGTGCTTTTTATGAACTAGATAGT +
Preference number: 6 (lower is better)
Translates to: LETQGIWPSAAI*CCSSAFYELDS
Trigger: ACTATCTAGTTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp ATTCACACCTTTTGCTATGCTAGACAACTGTTCTTCTaGGCAGGGAATTCCTGGGGAGACATTCTCATTTGC +
Preference number: 6 (lower is better)
Translates to: IHTFCYARQLFF*AGNSWGDILIC
Trigger: GCAAATGAGAATGTCTCCCCAGGAATTCCCTGCGCAGAAGAACAGTTGTCTAGCATAGCAAAAGGTGTGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp AGAGAAGTTTTGCTTGTTGGCTGCAGGCTGGATCTCTaGTCTCTGATTGGTGAGGAAGAGTTGAGTCTTTTT +
Preference number: 6 (lower is better)
Translates to: REVLLVGCRLDL*SLIGEEELSLF
Trigger: AAAAAGACTCAACTCTTCCTCACCAATCAGAGACCAGAGATCCAGCCTGCAGCCAACAAGCAAAACTTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp ATTCACTATGACCATGCCTCTGTTTTTGGGCAACAATaGCAGAGAATCTTTCTTGGGTACGGCACACCCATT +
Preference number: 6 (lower is better)
Translates to: IHYDHASVFGQQ*QRIFLGYGTPI
Trigger: AATGGGTGTGCCGTACCCAAGAAAGATTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGGTCATAGTGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp GAAACATTGGAATGGGTCGTGTCACACTTGGGAACCGGAACACATTaGTTCATGGCCAATGATGTTTCCAAGTGCTTAGAGACAATTCCT +
Preference number: 6 (lower is better)
Translates to: ETLEWVVSHLGTGTH*FMANDVSKCLETIP
Trigger: AGGAATTGTCTCTAAGCACTTGGAAACATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGACCCATTCCAATGTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TTTCCGTTGGGAGATGGTTGCTTTGGATTCCCATTCTTCTCACATTaGATCATGTTTCTTTCAAAGCTGACTTCAGGGCTGCTCCGTTCA +
Preference number: 6 (lower is better)
Translates to: FPLGDGCFGFPFFSH*IMFLSKLTSGLLRS
Trigger: TGAACGGAGCAGCCCTGAAGTCAGCTTTGAAAGAAACATGATCAAATGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCAACGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TTCAGGCCTTGCAAGGTTGCCAAGTGGGATGAAAACAAATTTCCGTaGGGAGATGGTTGCTTTGGATTCCCATTCTTCTCACATTTGATC +
Preference number: 6 (lower is better)
Translates to: FRPCKVAKWDENKFP*GDGCFGFPFFSHLI
Trigger: GATCAAATGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCAACGGAAATTTGTTTTCATCCCACTTGGCAACCTTGCAAGGCCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp CGCTTGGCTTTATCCCATAGTATGGAGAAAGTTGGTCAGCTCCTTTaGTCTTCTTTATTGCTCCAGGGTAAAGGCATTGGGGAAGAAACA +
Preference number: 6 (lower is better)
Translates to: RLALSHSMEKVGQLL*SSLLLQGKGIGEET
Trigger: TGTTTCTTCCCCAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAAGGAGCTGACCAACTTTCTCCATACTATGGGATAAAGCCAAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp AACTCTTCCATTTTCACACCACTGTGTGAATTCAGGTaGATTTCTAGAGCTCGGGCATTGGAAAAGCTCTTG +
Preference number: 6 (lower is better)
Translates to: NSSIFTPLCEFR*ISRARALEKLL
Trigger: CAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCACACAGTGGTGTGAAAATGGAAGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp GAAACTCAGGGGATTTGGCCATCTGCTGCCATCTGCTaGTGCAGTAGTGCTTTTTATGAACTAGATAGTTAT +
Preference number: 6 (lower is better)
Translates to: ETQGIWPSAAIC*CSSAFYELDSY
Trigger: ATAACTATCTAGTTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCCTGAGTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CCA 72 bp GTTGTGGATGACAAGAGAACTGGCGATATAATCGCTTaGCTTTATCCCATAGTATGGAGAAAGTTGGTCAGC +
Preference number: 6 (lower is better)
Translates to: VVDDKRTGDIIA*LYPIVWRKLVS
Trigger: GCTGACCAACTTTCTCCATACTATGGGATAAAGCCAAGCGATTATATCGCCAGTTCTCTTGTCATCCACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS TCA 72 bp CTGTATTTGTGCTTTGTTCGACGTCAGTGTTGTGGATaGCAAGAGAACTGGCGATATAATCGCTTGGCTTTA +
Preference number: 6 (lower is better)
Translates to: LYLCFVRRQCCG*QENWRYNRLAL
Trigger: TAAAGCCAAGCGATTATATCGCCAGTTCTCTTGTCATCCACAACACTGACGTCGAACAAAGCACAAATACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp TGGAGAAAGTTGGTCAGCTCCTTTTGTCTTCTTTATTaGTCCAGGGTAAAGGCATTGGGGAAGAAACAAATG +
Preference number: 6 (lower is better)
Translates to: WRKLVSSFCLLY*SRVKALGKKQM
Trigger: CATTTGTTTCTTCCCCAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAAGGAGCTGACCAACTTTCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CTGGGATTTTTCACATCAACAGGCTTTCCGTTTATTTaGTCGTCACTACTGTTGGAGGTGGGCAACTTTTTG +
Preference number: 6 (lower is better)
Translates to: LGFFTSTGFPFI*SSLLLEVGNFL
Trigger: CAAAAAGTTGCCCACCTCCAACAGTAGTGACGACAAAATAAACGGAAAGCCTGTTGATGTGAAAAATCCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp TTATCCCATAGTATGGAGAAAGTTGGTCAGCTCCTTTaGTCTTCTTTATTGCTCCAGGGTAAAGGCATTGGG +
Preference number: 6 (lower is better)
Translates to: LSHSMEKVGQLL*SSLLLQGKGIG
Trigger: CCCAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAAGGAGCTGACCAACTTTCTCCATACTATGGGATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 72 bp CTGGCCTTTAGGAGATTCATTTTCTGTATTTGTGCTTaGTTCGACGTCAGTGTTGTGGATGACAAGAGAACT +
Preference number: 6 (lower is better)
Translates to: LAFRRFIFCICA*FDVSVVDDKRT
Trigger: AGTTCTCTTGTCATCCACAACACTGACGTCGAACAAAGCACAAATACAGAAAATGAATCTCCTAAAGGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS CAA 90 bp TCCCATAGTATGGAGAAAGTTGGTCAGCTCCTTTTGTCTTCTTTATaGCTCCAGGGTAAAGGCATTGGGGAAGAAACAAATGTTTGTTTT +
Preference number: 6 (lower is better)
Translates to: SHSMEKVGQLLLSSL*LQGKGIGEETNVCF
Trigger: AAAACAAACATTTGTTTCTTCCCCAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAAGGAGCTGACCAACTTTCTCCATACTATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2
CDS GCA 72 bp AAGTGGGATGAAAACAAATTTCCGTTGGGAGATGGTTaGTTTGGATTCCCATTCTTCTCACATTTGATCATG +
Preference number: 6 (lower is better)
Translates to: KWDENKFPLGDG*FGFPFFSHLIM
Trigger: CATGATCAAATGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCAACGGAAATTTGTTTTCATCCCACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053467.6
ENSMUST00000230319.2