Pregenerated sensors for ZFP998 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074832Ensembl transcript IDs: ENSMUST00000091541.11, ENSMUST00000172579.4, ENSMUST00000172688.4, ENSMUST00000173583.8
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTaGATCAGCCTGCTTCAGGCTGGGAGAGCCTACACACAAGATTTC | + |
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Preference number: 1 (lower is better) Translates to: STPGGLILSGSKVKV*ISLLQAGRAYTQDF Trigger: GAAATCTTGTGTGTAGGCTCTCCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CCA 90 bp | TCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTaGGAGAGCCTACACACAAGATTTCCATCAATTATGTGTTCTTTT | + |
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Preference number: 1 (lower is better) Translates to: SQWQQGQSLDQPASG*ESLHTRFPSIMCSF Trigger: AAAAGAACACATAATTGATGGAAATCTTGTGTGTAGGCTCTCCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CCA 90 bp | CATTATATTCATGCAGGTTTTCTGCCATATGTGTTCTTTTATGTATaGGGTGATGACTGTGTCACACAAGGGATTAGTACTCTGGAAAAA | + |
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Preference number: 1 (lower is better) Translates to: HYIHAGFLPYVFFYV*GDDCVTQGISTLEK Trigger: TTTTTCCAGAGTACTAATCCCTTGTGTGACACAGTCATCACCCCATACATAAAAGAACACATATGGCAGAAAACCTGCATGAATATAATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCTGTGACACGGTTTCTGCTTCCGGCCCTCCACCACAGTTTGGCGCGGGTGCTTCCCAGGAAAACTaGGTTTTATTTCCCATCTCT | + |
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Preference number: 2 (lower is better) Translates to: KSCDTVSASGPPPQFGAGASQEN*VLFPIS Trigger: AGAGATGGGAAATAAAACTCAGTTTTCCTGGGAAGC...ACCCGCGCCAAACTGTGGTGGAGGGCCGGAAGCAGAAACCGTGTCACAGCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| 3UTR-3UTR TCA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTTGTATGTTTGGAGATaGCTGTGGCCTGGAAAGGGT | + |
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Preference number: 2 (lower is better) Translates to: WSNSQWQQGQSLDQPASGLYVWR*LWPGKG Trigger: ACCCTTTCCAGGCCACAGTCATCTCCAAACATACAA...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CCA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCCTTCTCCCTTGTGAATaGTCTTTCCACATTGATAAT | + |
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Preference number: 2 (lower is better) Translates to: SREQGSTPGGLILSGSKVLLPCE*SFHIDN Trigger: ATTATCAATGTGGAAAGACCATTCACAAGGGAGAAG...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CCA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCGGTTACTCTCCAAAATaGGTTGGTTCTTTTGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: SREQGSTPGGLILSGSKVGYSPK*VGSFVF Trigger: AAAGACAAAAGAACCAACCCATTTTGGAGAGTAACC...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CCA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCGAGATGACTGTGGCCTaGAAAGGGTTTACCTTATTC | + |
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Preference number: 2 (lower is better) Translates to: WSNSQWQQGQSLDQPASGEMTVA*KGFTLF Trigger: GAATAAGGTAAACCCTTTCCAGGCCACAGTCATCTC...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CCA 90 bp | CTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTGGGGTTCCTTTAAGTGTTTaGAGTGTACAACGACATGCG | + |
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Preference number: 2 (lower is better) Translates to: LILSGSKVKVWISLLQAGVPLSV*SVQRHA Trigger: CGCATGTCGTTGTACACTCCAAACACTTAAAGGAAC...CCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CCA 90 bp | CTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTGGGGTGTTCTTTTATGTATaGGGTGATGACTGTGTCACA | + |
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Preference number: 2 (lower is better) Translates to: LILSGSKVKVWISLLQAGVFFYV*GDDCVT Trigger: TGTGACACAGTCATCACCCCATACATAAAAGAACAC...CCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR GCA 90 bp | CTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTGGGCAGATGACAGTAAATTaGCAAGGTTTTTACCACAGT | + |
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Preference number: 2 (lower is better) Translates to: LILSGSKVKVWISLLQAGQMTVN*QGFYHS Trigger: ACTGTGGTAAAAACCTTGGCAATTTACTGTCATCTG...CCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGGGAGAGCCTACACACAAGATTTCCATCAATTATGTGTTCTTTTACGTCGAGATTACAAAGTTCTaGAGTGTGTCCCACATTGAT | + |
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Preference number: 2 (lower is better) Translates to: RLGEPTHKISINYVFFYVEITKF*SVSHID Trigger: ATCAATGTGGGACACACTTCAGAACTTTGTAATCTC...GACGTAAAAGAACACATAATTGATGGAAATCTTGTGTGTAGGCTCTCCCAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR TCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGTTTTTATGTCTTTGTTaGCTTCTCCCTTGTGAATGG | + |
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Preference number: 2 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVFLCLC*LLPCEW Trigger: CCATTCACAAGGGAGAAGTCAACAAAGACATAAAAA...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR GCA 90 bp | GTAAATTGCCAAGGTTTTTACCACAGTGATTACAATAATGAGGGTTCTCCCCAGGACTGTGACTTGAAATaGTTTACAACGCTGACTACA | + |
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Preference number: 2 (lower is better) Translates to: VNCQGFYHSDYNNEGSPQDCDLK*FTTLTT Trigger: TGTAGTCAGCGTTGTAAAGCATTTCAAGTCACAGTC...CTGGGGAGAACCCTCATTATTGTAATCACTGTGGTAAAAACCTTGGCAATTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR GCA 90 bp | GTAAATTGCCAAGGTTTTTACCACAGTGATTACAATAATGAGGGTTCTCCCCAGGAGACTAGTGAAAACTaGAAAGACTTCATTATCACA | + |
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Preference number: 2 (lower is better) Translates to: VNCQGFYHSDYNNEGSPQETSEN*KDFIIT Trigger: TGTGATAATGAAGTCTTTGCAGTTTTCACTAGTCTC...CTGGGGAGAACCCTCATTATTGTAATCACTGTGGTAAAAACCTTGGCAATTTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CAA 90 bp | AGCCTACACACAAGATTTCCATCAATTATGTGTTCTTTTACGTCTTaGGAAACTATCGTGATATTCATAGTCCCTTTCACATTCACTGCA | + |
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Preference number: 2 (lower is better) Translates to: SLHTRFPSIMCSFTS*ETIVIFIVPFTFTA Trigger: TGCAGTGAATGTGAAAGGGACTATGAATATCACGATAGTTTCCAAAGACGTAAAAGAACACATAATTGATGGAAATCTTGTGTGTAGGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CCA 72 bp | GGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTaGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCA | + |
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Preference number: 3 (lower is better) Translates to: GARVHPRWSNSQ*QQGQSLDQPAS Trigger: TGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CCA 72 bp | GGTGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTaGATCAGCCTGCTTCAGGCTGGGAGAGCCTACACA | + |
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Preference number: 3 (lower is better) Translates to: GGLILSGSKVKV*ISLLQAGRAYT Trigger: TGTGTAGGCTCTCCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CAA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCCCAGTGTGCTTCACTTaGTATACATGTGAAGAATTA | + |
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Preference number: 3 (lower is better) Translates to: SREQGSTPGGLILSGSKVPVCFT*YTCEEL Trigger: TAATTCTTCACATGTATACAAAGTGAAGCACACTGG...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CCA 72 bp | CAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTaGGAGAGCCTACACACAAGATTTCCATCAATTATG | + |
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Preference number: 3 (lower is better) Translates to: QQGQSLDQPASG*ESLHTRFPSIM Trigger: CATAATTGATGGAAATCTTGTGTGTAGGCTCTCCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CAA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCGCAGATGACAGTAAATaGCCAAGGTTTTTACCACAG | + |
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Preference number: 3 (lower is better) Translates to: WSNSQWQQGQSLDQPASGADDSK*PRFLPQ Trigger: CTGTGGTAAAAACCTTGGCAATTTACTGTCATCTGC...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CAA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTGTTCCTTTAAGTGTTaGGAGTGTACAACGACATGC | + |
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Preference number: 3 (lower is better) Translates to: WSNSQWQQGQSLDQPASGCSFKC*ECTTTC Trigger: GCATGTCGTTGTACACTCCAAACACTTAAAGGAACA...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CCA 72 bp | CATGCAGGTTTTCTGCCATATGTGTTCTTTTATGTATaGGGTGATGACTGTGTCACACAAGGGATTAGTACT | + |
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Preference number: 3 (lower is better) Translates to: HAGFLPYVFFYV*GDDCVTQGIST Trigger: AGTACTAATCCCTTGTGTGACACAGTCATCACCCCATACATAAAAGAACACATATGGCAGAAAACCTGCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGGGAGAGCCTACACACAAGATTTCCATCAATTATGTGTTCTTTTACGTCGAAGTGTGTCCCACATaGATTATATTCATGAGGTTT | + |
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Preference number: 3 (lower is better) Translates to: RLGEPTHKISINYVFFYVEVCPT*IIFMRF Trigger: AAACCTCATGAATATAATCAATGTGGGACACACTTC...GACGTAAAAGAACACATAATTGATGGAAATCTTGTGTGTAGGCTCTCCCAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR GCA 72 bp | ATCTTTTATGTCATTGCAGATGACTGTGACTTGAAATaGTTTACAACGCTGACTACATTCACAAGGTTTCTC | + |
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Preference number: 3 (lower is better) Translates to: IFYVIADDCDLK*FTTLTTFTRFL Trigger: GAGAAACCTTGTGAATGTAGTCAGCGTTGTAAAGCATTTCAAGTCACAGTCATCTGCAATGACATAAAAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CCA 90 bp | CCACAGTTTGGCGCGGGTAACGGGGAGGAGTTTCGTGGGGGCTGTGGCGCTCACTCTGGCTCCCTCATGTaGCCTATACTTGGACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: PQFGAGNGEEFRGGCGAHSGSLM*PILGPQ Trigger: TTGGGGTCCAAGTATAGGCCACATGAGGGAGCCAGA...GTGAGCGCCACAGCCCCCACGAAACTCCTCCCCGTTACCCGCGCCAAACTGTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR TCA 90 bp | GAGTTTCGTGGGGGCTGTGGCGCTCACTCGCGGCTTCCCAGGAAAACTGAGTTTTGGTGGCTGGACAGATaGCTCCGTGTCATGGAATCT | + |
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Preference number: 4 (lower is better) Translates to: EFRGGCGAHSRLPRKTEFWWLDR*LRVMES Trigger: AGATTCCATGACACGGAGTCATCTGTCCAGCCACCA...AAACTCAGTTTTCCTGGGAAGCCGCGAGTGAGCGCCACAGCCCCCACGAAACTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR TCA 90 bp | CCACAGTTTGGCGCGGGTAACGGGGAGGAGTTTCGTGGGGGCTGTGGCGCTCACTTCCAGCAGGTGCTGTaGTATTTTGTACCTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: PQFGAGNGEEFRGGCGAHFQQVL*YFVPSF Trigger: AAAAGAAGGTACAAAATATCACAGCACCTGCTGGAA...GTGAGCGCCACAGCCCCCACGAAACTCCTCCCCGTTACCCGCGCCAAACTGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR TCA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCGTATGGGTCCTTTTATaGCATTGGAGATCAGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: SREQGSTPGGLILSGSKVVWVLL*HWRSAG Trigger: ACCCGCTGATCTCCAATGTCATAAAAGGACCCATAC...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CCA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCGACATTGGAGATGACTaGGTCTTGCAAAGGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SREQGSTPGGLILSGSKVDIGDD*VLQRLS Trigger: GGAAAGCCTTTGCAAGACCCAGTCATCTCCAATGTC...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR GCA 90 bp | GAGTTTCGTGGGGGCTGTGGCGCTCACTCGCGGCTTCCCAGGAAAACTGAGTTTTGGAATTCCAGCAGGTaGTGTGATATTTTGTACCTT | + |
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Preference number: 4 (lower is better) Translates to: EFRGGCGAHSRLPRKTEFWNSSR*CDILYL Trigger: AAGGTACAAAATATCACAGCACCTGCTGGAATTCCA...AAACTCAGTTTTCCTGGGAAGCCGCGAGTGAGCGCCACAGCCCCCACGAAACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR CCA 90 bp | CTACTTCAAGATGAGAACTCTGATCCCGAGCCGAGGCTAGACTCCTCCTCTGTTGATGACTCCGTGTCATaGAATCTGGCTCCCTCATGT | + |
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Preference number: 4 (lower is better) Translates to: LLQDENSDPEPRLDSSSVDDSVS*NLAPSC Trigger: ACATGAGGGAGCCAGATTCCATGACACGGAGTCATC...AACAGAGGAGGAGTCTAGCCTCGGCTCGGGATCAGAGTTCTCATCTTGAAGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173583.8 |
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| CDS-3UTR TCA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCTTCTTTTATGATATCTaGGACCACTGTGACCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SREQGSTPGGLILSGSKVFFYDI*DHCDRK Trigger: TTTCCGGTCACAGTGGTCTCAGATATCATAAAAGAA...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR GCA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCGAGATGACTGGGTCTTaGAAAGGCTTTCCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: WSNSQWQQGQSLDQPASGEMTGS*KGFPTL Trigger: CAATGTGGGAAAGCCTTTGCAAGACCCAGTCATCTC...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTATCTGAGACCACCCTaGCAAGAAAAGGCTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: WSNSQWQQGQSLDQPASGYLRPP*QEKALP Trigger: TGGTAAAGCCTTTTCTTGTCAGGGTGGTCTCAGATA...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CCA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCGACATTGGAGATGACTaGGTGTTGCAAAGGCTTTAC | + |
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Preference number: 4 (lower is better) Translates to: WSNSQWQQGQSLDQPASGDIGDD*VLQRLY Trigger: GTAAAGCCTTTGCAACACCCAGTCATCTCCAATGTC...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | TATGTCTGTTTATTACCTGCCTCCCAGATAGCCCTACTTCAAGATGAGAACTCTTGGTGGCTGGACAGATaGCTCCGTGTCATGGAATCT | + |
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Preference number: 4 (lower is better) Translates to: YVCLLPASQIALLQDENSWWLDR*LRVMES Trigger: AGATTCCATGACACGGAGTCATCTGTCCAGCCACCA...AGAGTTCTCATCTTGAAGTAGGGCTATCTGGGAGGCAGGTAATAAACAGACATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173583.8 |
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| CDS-3UTR CCA 90 bp | CTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCTGGGTCGAGAACTTTGACATaGTTCTTCAATATGATGGTC | + |
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Preference number: 4 (lower is better) Translates to: LILSGSKVKVWISLLQAGSRTLT*FFNMMV Trigger: GACCATCATATTGAAGAACCATGTCAAAGTTCTCGA...CCCAGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CCA 90 bp | CTTCAAGATGAGAACTCTGATCCCGAGCCGAGGCTAGACTCCTCCTCTGTTCAGTCGAGAACTTTGACATaGTTCTTCAATATGATGGTC | + |
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Preference number: 4 (lower is better) Translates to: LQDENSDPEPRLDSSSVQSRTLT*FFNMMV Trigger: GACCATCATATTGAAGAACCATGTCAAAGTTCTCGA...CTGAACAGAGGAGGAGTCTAGCCTCGGCTCGGGATCAGAGTTCTCATCTTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173583.8 |
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| CDS-3UTR CCA 90 bp | ACAATAATTAAAATAAAAGCTGTGACACGGTTTCTGCTTCCGGCCCTCCACCACGATGACTCCGTGTCATaGAATCTGGCTCCCTCATGT | + |
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Preference number: 4 (lower is better) Translates to: TIIKIKAVTRFLLPALHHDDSVS*NLAPSC Trigger: ACATGAGGGAGCCAGATTCCATGACACGGAGTCATC...GTGGTGGAGGGCCGGAAGCAGAAACCGTGTCACAGCTTTTATTTTAATTATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR GCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGGAGATCAGCGGGTCTTaGAAAGGCTTTCCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVEISGS*KGFPTL Trigger: CAATGTGGGAAAGCCTTTGCAAGACCCGCTGATCTC...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR GCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGGAGATTAGCGGGTCTTaGAAAGGCTTTCCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVEISGS*KGFPTL Trigger: CAATGTGGGAAAGCCTTTGCAAGACCCGCTAATCTC...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR GCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGGAGATGACTGAGCCTTaGAAAGGCTTTCCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVEMTEP*KGFPTL Trigger: CAATGTGGGAAAGCCTTTGCAAGGCTCAGTCATCTC...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR GCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGGAGATGAGCAGGTCTTaGAAAGGCTTTACCACAATG | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVEMSRS*KGFTTM Trigger: CATTGTGGTAAAGCCTTTGCAAGACCTGCTCATCTC...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | GATGACTGTGACTTGAAATGCTTTACAACGCTGACTACATTCACAAGGTTTCTCTCCAACTATGACTCCTaGCATGCCTTGTATGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: DDCDLKCFTTLTTFTRFLSNYDS*HALYVF Trigger: GAAGACATACAAGGCATGTCAGGAGTCATAGTTGGA...GAGAAACCTTGTGAATGTAGTCAGCGTTGTAAAGCATTTCAAGTCACAGTCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGAGTTTCTTCCAACTATaGCTCCTGACATGCCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVSFFQL*LLTCLV Trigger: TACAAGGCATGTCAGGAGTCATAGTTGGAAGAAACT...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGTATCTGAGACTACTGTaGGAGGTAAAGGCTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVYLRLL*EVKALP Trigger: TGGTAAAGCCTTTACCTCTCACAGTAGTCTCAGATA...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | ATCACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTTGGAGATGACTGTGTATCTGAGACCACTGTaGCAGGAAAAGGCTTTACTA | + |
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Preference number: 4 (lower is better) Translates to: ITGLLSTMCSLMYLEMTVYLRPL*QEKALL Trigger: TAGTAAAGCCTTTTCCTGTCACAGTGGTCTCAGATA...CACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| 3UTR CAA 72 bp | ACAGGGCTTCTCTCAACTATGTGCTCATTAATGTACTaGGAGATGACTGTGATATGCAAAGGTTTTCTCACA | + |
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Preference number: 4 (lower is better) Translates to: TGLLSTMCSLMY*EMTVICKGFLT Trigger: TGTGAGAAAACCTTTGCATATCACAGTCATCTCCAAGTACATTAATGAGCACATAGTTGAGAGAAGCCCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | GATGACTGTGACTTGAAATGCTTTACAACGCTGACTACATTCACAAGGTTTCTCTTCTTTTATGATATCTaGGACCACCCTGACAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: DDCDLKCFTTLTTFTRFLFFYDI*DHPDKK Trigger: TTTCTTGTCAGGGTGGTCTCAGATATCATAAAAGAA...GAGAAACCTTGTGAATGTAGTCAGCGTTGTAAAGCATTTCAAGTCACAGTCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR TCA 90 bp | TGTGTTCTTTATGTAGTTGCAGATGACAGTAAATTGCCAAGGTTTTTACCACAGTATCTGAGACTATTGTaGCAGGAAAAGGCTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: CVLYVVADDSKLPRFLPQYLRLL*QEKAFP Trigger: TGGGAAAGCCTTTTCCTGTCACAATAGTCTCAGATA...CTGTGGTAAAAACCTTGGCAATTTACTGTCATCTGCAACTACATAAAGAACACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CAA 90 bp | AAAAGCTGTGACACGGTTTCTGCTTCCGGCCCTCCACCACAGTTTGGCGCGGGTAGGTGCTGTGATATTTaGTACCTTCTTTTGGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: KSCDTVSASGPPPQFGAGRCCDI*YLLLVA Trigger: AGCCACCAAAAGAAGGTACAAAATATCACAGCACCT...ACCCGCGCCAAACTGTGGTGGAGGGCCGGAAGCAGAAACCGTGTCACAGCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR CAA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCGGTTCTTTTATGACATaGGAGATTAGCGGGTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: SREQGSTPGGLILSGSKVGSFMT*EISGSC Trigger: GCAAGACCCGCTAATCTCCAATGTCATAAAAGAACC...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CAA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCGGTTCTTTTATGACATaGGAGATGACTGGGTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: SREQGSTPGGLILSGSKVGSFMT*EMTGCC Trigger: GCAACACCCAGTCATCTCCAATGTCATAAAAGAACC...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CAA 90 bp | TCTAGGGAGCAAGGGTCCACCCCAGGTGGTCTAATTCTCAGTGGCAGCAAGGTCGGTTCTTTTATGACATaGGAGATGACTGAGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: SREQGSTPGGLILSGSKVGSFMT*EMTEPC Trigger: GCAAGGCTCAGTCATCTCCAATGTCATAAAAGAACC...GACCTTGCTGCCACTGAGAATTAGACCACCTGGGGTGGACCCTTGCTCCCTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS TCA 90 bp | GATCCTCGGTCTTTGTTTTCTCCCTTCTTTTGGTGGCTGGACAGATaGCTCCGTGTCATGGAATCTGGCTCCCTCATGTGGCCTTGTATG | + |
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Preference number: 5 (lower is better) Translates to: DPRSLFSPFFWWLDR*LRVMESGSLMWPCM Trigger: CATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGGAGAAAACAAAGACCGAGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CCA 90 bp | CTCTTAGAGATCCTCGGTCTTTGTTTTCTCCCTTCTTTTGGTGGCTaGACAGATGACTCCGTGTCATGGAATCTGGCTCCCTCATGTGGC | + |
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Preference number: 5 (lower is better) Translates to: LLEILGLCFLPSFGG*TDDSVSWNLAPSCG Trigger: GCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGGAGAAAACAAAGACCGAGGATCTCTAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CCA 90 bp | TCCCTTCTTTTGGTGGCTGGACAGATGACTCCGTGTCATGGAATCTaGCTCCCTCATGTGGCCTTGTATGTCTTCGAGAACTTTGACATG | + |
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Preference number: 5 (lower is better) Translates to: SLLLVAGQMTPCHGI*LPHVALYVFENFDM Trigger: CATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CCA 90 bp | TACCTTCTTTTGGTGGCTGGACAGATGACTCCGTGTCATGGAATCTaGCTCCCTCATGTGGCCTATACTTGGACCCCAACTTTAGACCTN | + |
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Preference number: 5 (lower is better) Translates to: YLLLVAGQMTPCHGI*LPHVAYTWTPTLDL Trigger: NAGGTCTAAAGTTGGGGTCCAAGTATAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR CAA 90 bp | CTACTTCAAGATGAGAACTCTGATCCCGAGCCGAGGCTAGACTCCTCCTCTGTTGTTTTCTCCCTTCTTTaGGTGGCTGGACAGATGACT | + |
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Preference number: 5 (lower is better) Translates to: LLQDENSDPEPRLDSSSVVFSLL*VAGQMT Trigger: AGTCATCTGTCCAGCCACCAAAAGAAGGGAGAAAAC...AACAGAGGAGGAGTCTAGCCTCGGCTCGGGATCAGAGTTCTCATCTTGAAGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173583.8 |
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| CDS CCA 90 bp | TGTTTTCTCCCTTCTTTTGGTGGCTGGACAGATGACTCCGTGTCATaGAATCTGGCTCCCTCATGTGGCCTTGTATGTCTTCGAGAACTT | + |
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Preference number: 5 (lower is better) Translates to: CFLPSFGGWTDDSVS*NLAPSCGLVCLREL Trigger: AAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGGAGAAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS-3UTR CAA 90 bp | TGGTCTAATTCTCAGTGGCAGCAAGGTCAAAGTCTGGATCAGCCTGCTTCAGGCGGTTCTTTTATGACATaGGAGATGAGTGGATGTAGC | + |
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Preference number: 5 (lower is better) Translates to: WSNSQWQQGQSLDQPASGGSFMT*EMSGCS Trigger: GCTACATCCACTCATCTCCAATGTCATAAAAGAACC...GCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCCACTGAGAATTAGACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CAA 90 bp | TGTGGCGCTCACTCGCGGCTTCCCAGGAAAACTGAGTTTTATTTCCCATCTCTTATTTTGTACCTTCTTTaGGTGGCTGGACAGATGACT | + |
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Preference number: 5 (lower is better) Translates to: CGAHSRLPRKTEFYFPSLILYLL*VAGQMT Trigger: AGTCATCTGTCCAGCCACCAAAAGAAGGTACAAAAT...AAGAGATGGGAAATAAAACTCAGTTTTCCTGGGAAGCCGCGAGTGAGCGCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS-3UTR CAA 90 bp | ACAATAATTAAAATAAAAGCTGTGACACGGTTTCTGCTTCCGGCCCTCCACCACTCATGTGGCCTATACTaGGACCCCAACTTTAGACCT | + |
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Preference number: 5 (lower is better) Translates to: TIIKIKAVTRFLLPALHHSCGLY*DPNFRP Trigger: AGGTCTAAAGTTGGGGTCCAAGTATAGGCCACATGA...GTGGTGGAGGGCCGGAAGCAGAAACCGTGTCACAGCTTTTATTTTAATTATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS CCA 90 bp | TCTGGCTCCCTCATGTGGCCTTGTATGTCTTCGAGAACTTTGACATaGTTCTTCAATATGATGGTCTTCCCATTTGTAGCCTATAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: SGSLMWPCMSSRTLT*FFNMMVFPFVAYRS Trigger: ACTTCTATAGGCTACAAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS-3UTR CAA 90 bp | TTATTACCTGCCTCCCAGATAGCCCTACTTCAAGATGAGAACTCTGATCCCGAGATGTCTTCGAGAACTTaGACATGGTTCTTCAATATG | + |
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Preference number: 5 (lower is better) Translates to: LLPASQIALLQDENSDPEMSSRT*TWFFNM Trigger: CATATTGAAGAACCATGTCAAAGTTCTCGAAGACAT...CTCGGGATCAGAGTTCTCATCTTGAAGTAGGGCTATCTGGGAGGCAGGTAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173583.8 |
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| CDS-3UTR CAA 90 bp | GATGACTGTGACTTGAAATGCTTTACAACGCTGACTACATTCACAAGGTTTCTCGGTTCTTTTATGTCTTaGGAGATGAGCAGGTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: DDCDLKCFTTLTTFTRFLGSFMS*EMSRSC Trigger: GCAAGACCTGCTCATCTCCAAAGACATAAAAGAACC...GAGAAACCTTGTGAATGTAGTCAGCGTTGTAAAGCATTTCAAGTCACAGTCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS CCA 90 bp | ACTATGACTCCTGACATGCCTTGTATGTCTTCGAGAACTTTGACATaGTTCTTCAATATGATGGTCTTCCCATTTGTAGCCTATAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: TMTPDMPCMSSRTLT*FFNMMVFPFVAYRS Trigger: ACTTCTATAGGCTACAAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCATGTCAGGAGTCATAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CAA 90 bp | TGTGTTCTTTATGTAGTTGCAGATGACAGTAAATTGCCAAGGTTTTTACCACAGGGTTCTTTTATGACATaGGAGATGACTGGGTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: CVLYVVADDSKLPRFLPQGSFMT*EMTGSC Trigger: GCAAGACCCAGTCATCTCCAATGTCATAAAAGAACC...CTGTGGTAAAAACCTTGGCAATTTACTGTCATCTGCAACTACATAAAGAACACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS-3UTR CAA 90 bp | TGTGTTCTTTATGTAGTTGCAGATGACAGTAAATTGCCAAGGTTTTTACCACAGATGTCTTCGAGAACTTaGACATGGTTCTTCAATATG | + |
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Preference number: 5 (lower is better) Translates to: CVLYVVADDSKLPRFLPQMSSRT*TWFFNM Trigger: CATATTGAAGAACCATGTCAAAGTTCTCGAAGACAT...CTGTGGTAAAAACCTTGGCAATTTACTGTCATCTGCAACTACATAAAGAACACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS CCA 72 bp | TTGGTGGCTGGACAGATGACTCCGTGTCATGGAATCTaGCTCCCTCATGTGGCCTATACTTGGACCCCAACT | + |
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Preference number: 6 (lower is better) Translates to: LVAGQMTPCHGI*LPHVAYTWTPT Trigger: AGTTGGGGTCCAAGTATAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS CCA 72 bp | TTGGTGGCTGGACAGATGACTCCGTGTCATGGAATCTaGCTCCCTCATGTGGCCTTGTATGTCTTCGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: LVAGQMTPCHGI*LPHVALYVFEN Trigger: GTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CCA 72 bp | CCTTCTTTTGGTGGCTGGACAGATGACTCCGTGTCATaGAATCTGGCTCCCTCATGTGGCCTATACTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: PSFGGWTDDSVS*NLAPSCGLYLD Trigger: GTCCAAGTATAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS CCA 72 bp | CCTTCTTTTGGTGGCTGGACAGATGACTCCGTGTCATaGAATCTGGCTCCCTCATGTGGCCTTGTATGTCTT | + |
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Preference number: 6 (lower is better) Translates to: PSFGGWTDDSVS*NLAPSCGLVCL Trigger: AAGACATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS TCA 72 bp | TCTTTGTTTTCTCCCTTCTTTTGGTGGCTGGACAGATaGCTCCGTGTCATGGAATCTGGCTCCCTCATGTGG | + |
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Preference number: 6 (lower is better) Translates to: SLFSPFFWWLDR*LRVMESGSLMW Trigger: CCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGGAGAAAACAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CAA 90 bp | GGACAGATGACTCCGTGTCATGGAATCTGGCTCCCTCATGTGGCCTaGTATGTCTTCGAGAACTTTGACATGGTTCTTCAATATGATGGT | + |
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Preference number: 6 (lower is better) Translates to: GQMTPCHGIWLPHVA*YVFENFDMVLQYDG Trigger: ACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGTCATCTGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CAA 72 bp | ACTCCGTGTCATGGAATCTGGCTCCCTCATGTGGCCTaGTATGTCTTCGAGAACTTTGACATGGTTCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: TPCHGIWLPHVA*YVFENFDMVLQ Trigger: TTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGATTCCATGACACGGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CAA 72 bp | AATTCCAGCAGGTGCTGTGATATTTTGTACCTTCTTTaGGTGGCTGGACAGATGACTCCGTGTCATGGAATC | + |
|
Preference number: 6 (lower is better) Translates to: NSSRCCDILYLL*VAGQMTPCHGI Trigger: GATTCCATGACACGGAGTCATCTGTCCAGCCACCAAAAGAAGGTACAAAATATCACAGCACCTGCTGGAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172688.4 |
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| CDS CAA 72 bp | GGCTCCCTCATGTGGCCTTGTATGTCTTCGAGAACTTaGACATGGTTCTTCAATATGATGGTCTTCCCATTT | + |
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Preference number: 6 (lower is better) Translates to: GSLMWPCMSSRT*TWFFNMMVFPF Trigger: AAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CAA 90 bp | ATGGAATCTGGCTCCCTCATGTGGCCTTGTATGTCTTCGAGAACTTaGACATGGTTCTTCAATATGATGGTCTTCCCATTTGTAGCCTAT | + |
|
Preference number: 6 (lower is better) Translates to: MESGSLMWPCMSSRT*TWFFNMMVFPFVAY Trigger: ATAGGCTACAAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAGGGAGCCAGATTCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CCA 72 bp | CTCATGTGGCCTTGTATGTCTTCGAGAACTTTGACATaGTTCTTCAATATGATGGTCTTCCCATTTGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: LMWPCMSSRTLT*FFNMMVFPFVA Trigger: GGCTACAAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCCACATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091541.11 ENSMUST00000173583.8 |
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| CDS CCA 72 bp | CCTGACATGCCTTGTATGTCTTCGAGAACTTTGACATaGTTCTTCAATATGATGGTCTTCCCATTTGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: PDMPCMSSRTLT*FFNMMVFPFVA Trigger: GGCTACAAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCATGTCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS CAA 90 bp | CTTCCAACTATGACTCCTGACATGCCTTGTATGTCTTCGAGAACTTaGACATGGTTCTTCAATATGATGGTCTTCCCATTTGTAGCCTAT | + |
|
Preference number: 6 (lower is better) Translates to: LPTMTPDMPCMSSRT*TWFFNMMVFPFVAY Trigger: ATAGGCTACAAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCATGTCAGGAGTCATAGTTGGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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| CDS CAA 72 bp | ATGACTCCTGACATGCCTTGTATGTCTTCGAGAACTTaGACATGGTTCTTCAATATGATGGTCTTCCCATTT | + |
|
Preference number: 6 (lower is better) Translates to: MTPDMPCMSSRT*TWFFNMMVFPF Trigger: AAATGGGAAGACCATCATATTGAAGAACCATGTCAAAGTTCTCGAAGACATACAAGGCATGTCAGGAGTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172579.4 |
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