Pregenerated sensors for ZFP980 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058186

Ensembl transcript IDs: ENSMUST00000105738.9, ENSMUST00000180014.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 72 bp	TATAGGATTAAGAACATGCAGTCTTGGTGGCTCAGTTaGTCAAATACACTATCAAGTACAATCTGTGTCAAT	+
Preference number: 4 (lower is better) Translates to: YRIKNMQSWWLS*SNTLSSTICVN Trigger: ATTGACACAGATTGTACTTGATAGTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105738.9
CDS GCA 90 bp	TTTCTAAGCTCATTACATTTAGAAGACTTCTTTCGGTTATGCCCATaGTCATTGACAATGTGCTGTGTGTCTTGTTCCAAGACCTTCTCC	+
Preference number: 5 (lower is better) Translates to: FLSSLHLEDFFRLCP*SLTMCCVSCSKTFS Trigger: GGAGAAGGTCTTGGAACAAGACACACAGCACATTGTCAATGAGCATGGGCATAACCGAAAGAAGTCTTCTAAATGTAATGAGCTTAGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105738.9 ENSMUST00000180014.2
CDS GCA 90 bp	GTGTGTCTTGTTCCAAGACCTTCTCCTTCTCATAGTTTCCACATATaGAGTGATTTTCCACAAACAACAGATTGTTGTAATTCTCCAACA	+
Preference number: 5 (lower is better) Translates to: VCLVPRPSPSHSFHI*SDFPQTTDCCNSPT Trigger: TGTTGGAGAATTACAACAATCTGTTGTTTGTGGAAAATCACTGCATATGTGGAAACTATGAGAAGGAGAAGGTCTTGGAACAAGACACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105738.9 ENSMUST00000180014.2
CDS CAA 72 bp	GTTATGCCCATGCTCATTGACAATGTGCTGTGTGTCTaGTTCCAAGACCTTCTCCTTCTCATAGTTTCCACA	+
Preference number: 6 (lower is better) Translates to: VMPMLIDNVLCV*FQDLLLLIVST Trigger: TGTGGAAACTATGAGAAGGAGAAGGTCTTGGAACAAGACACACAGCACATTGTCAATGAGCATGGGCATAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105738.9 ENSMUST00000180014.2
CDS CAA 72 bp	CATTTAGAAGACTTCTTTCGGTTATGCCCATGCTCATaGACAATGTGCTGTGTGTCTTGTTCCAAGACCTTC	+
Preference number: 6 (lower is better) Translates to: HLEDFFRLCPCS*TMCCVSCSKTF Trigger: GAAGGTCTTGGAACAAGACACACAGCACATTGTCAATGAGCATGGGCATAACCGAAAGAAGTCTTCTAAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105738.9 ENSMUST00000180014.2
CDS GCA 72 bp	TCATTACATTTAGAAGACTTCTTTCGGTTATGCCCATaGTCATTGACAATGTGCTGTGTGTCTTGTTCCAAG	+
Preference number: 6 (lower is better) Translates to: SLHLEDFFRLCP*SLTMCCVSCSK Trigger: CTTGGAACAAGACACACAGCACATTGTCAATGAGCATGGGCATAACCGAAAGAAGTCTTCTAAATGTAATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105738.9 ENSMUST00000180014.2
CDS TCA 72 bp	TTTCTGTTGTGTTCTTTCTTCTCTATGTGGGTTCCTTaGTTGAGACTAATGATAGAAGACCCCTTTAAACAG	+
Preference number: 6 (lower is better) Translates to: FLLCSFFSMWVP*LRLMIEDPFKQ Trigger: CTGTTTAAAGGGGTCTTCTATCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAACAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105738.9 ENSMUST00000180014.2

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