Pregenerated sensors for ZFP975 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069727Ensembl transcript IDs: ENSMUST00000107992.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCTACTGTATGAATCCTTCCATGATGATGAAGACTACAGATTTGTaGAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: LYCMNPSMMMKTTDL*KALTMLKNFIGVLS Trigger: GGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTGCACAAATCTGTAGTCTTCATCATCATGGAAGGATTCATACAGTAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR GCA 90 bp | GGGCTGGGCAAAAGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTGAGATAACTGTGTTGTaGAATGGCTTCATCACTTCT | + |
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Preference number: 2 (lower is better) Translates to: GLGKSPGRQTGDFGLLCSEITVL*NGFITS Trigger: AGAAGTGATGAAGCCATTGCACAACACAGTTATCTC...AGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCTTTTGCCCAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR GCA 90 bp | GGGCTGGGCAAAAGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTAAGATGACTGCTTTCTaGAAAGGCTTTAAGACTATG | + |
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Preference number: 2 (lower is better) Translates to: GLGKSPGRQTGDFGLLCSKMTAF*KGFKTM Trigger: CATAGTCTTAAAGCCTTTGCAGAAAGCAGTCATCTT...AGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCTTTTGCCCAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTGGGCAAAAGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTAACTGTGTTGTGCAATaGCTTCATCACTTCTATCAT | + |
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Preference number: 2 (lower is better) Translates to: GLGKSPGRQTGDFGLLCSNCVVQ*LHHFYH Trigger: ATGATAGAAGTGATGAAGCCATTGCACAACACAGTT...AGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCTTTTGCCCAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR GCA 90 bp | GGGCTGGGCAAAAGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTGAGCATATTGTAATGTaGAAAGGCTTTACTAAATCC | + |
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Preference number: 2 (lower is better) Translates to: GLGKSPGRQTGDFGLLCSEHIVM*KGFTKS Trigger: GGATTTAGTAAAGCCTTTGCACATTACAATATGCTC...AGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCTTTTGCCCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCTCTACAGATGTTTCCTTTTATGTATTTGGAGACCTCTCTGTTGTGAAGAGGAGATTATTGCCTTATaGAAAGGGTTTGTCACACTG | + |
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Preference number: 2 (lower is better) Translates to: FLYRCFLLCIWRPLCCEEEIIAL*KGFVTL Trigger: CAGTGTGACAAACCCTTTGCATAAGGCAATAATCTC...CTCTTCACAACAGAGAGGTCTCCAAATACATAAAAGGAAACATCTGTAGAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCCTAGATGGTTCCGGGATCTTTCCAATATaGATTCTTGTATGTACTTTG | + |
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Preference number: 2 (lower is better) Translates to: QSPYHVKELYRGSFLDGSGIFPI*ILVCTL Trigger: CAAAGTACATACAAGAATGCATATTGGAAAGATCCC...GGAACCATCTAGGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR GCA 90 bp | TTTAATGTAGTCAGAGATAACTGTGTTGTGCAATGGCTTCATCACTTCTATCATAAAAGATTAGTCATATaGAAAGGCTTTACCACACTG | + |
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Preference number: 2 (lower is better) Translates to: FNVVRDNCVVQWLHHFYHKRLVI*KGFTTL Trigger: CAGTGTGGTAAAGCCTTTGCATATGACTAATCTTTT...ATGATAGAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR GCA 72 bp | AGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATaGTCTCGCAGCTGCGCACAAAGAGGTTTAGCACCA | + |
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Preference number: 3 (lower is better) Translates to: SPGRQTGDFGLL*SRSCAQRGLAP Trigger: TGGTGCTAAACCTCTTTGTGCGCAGCTGCGAGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTCGCAGCTGCGCACAAAGAGTCAGAGATAACTGTGTaGTGCAATGGCTTCATCACT | + |
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Preference number: 3 (lower is better) Translates to: GDRLVTLACYALAAAHKESEITV*CNGFIT Trigger: AGTGATGAAGCCATTGCACAACACAGTTATCTCTGA...CTCTTTGTGCGCAGCTGCGAGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTCGCAGCTGCGCACAAAGAGTCCAGTATCTGTTCTTaGATGCATCCCAAAAGATTA | + |
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Preference number: 3 (lower is better) Translates to: GDRLVTLACYALAAAHKESSICS*MHPKRL Trigger: TAATCTTTTGGGATGCATCAAAGAACAGATACTGGA...CTCTTTGTGCGCAGCTGCGAGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR CAA 90 bp | TTTAATGTAGTCAGAGATAACTGTGTTGTGCAATGGCTTCATCACTTCTATCATGTGCTTTTTCATGTATaGGAAGATGACTCCGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: FNVVRDNCVVQWLHHFYHVLFHV*EDDSGV Trigger: CACACCGGAGTCATCTTCCAATACATGAAAAAGCAC...ATGATAGAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR CAA 90 bp | CAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCCTAGATGGTTCCTGTACTTTGAGATTATaGCCTTATGCAAAGGGTTTG | + |
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Preference number: 3 (lower is better) Translates to: QSPYHVKELYRGSFLDGSCTLRL*PYAKGL Trigger: CAAACCCTTTGCATAAGGCAATAATCTCAAAGTACA...GGAACCATCTAGGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR TCA 72 bp | ATGTGCTTTTTCATGTATTGGAAGATGACTCCGGTGTaGATAGGCTTCATCACACTGATTACATATTTAGAG | + |
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Preference number: 3 (lower is better) Translates to: MCFFMYWKMTPV*IGFITLITYLE Trigger: CTCTAAATATGTAATCAGTGTGATGAAGCCTATTCACACCGGAGTCATCTTCCAATACATGAAAAAGCACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR GCA 72 bp | ATGAATCCTTCCATGATGATGAAGACTACAGATTTGTaGAAAGCCCTTACCATGTTAAAGAACTTTATAGGG | + |
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Preference number: 3 (lower is better) Translates to: MNPSMMMKTTDL*KALTMLKNFIG Trigger: CCCTATAAAGTTCTTTAACATGGTAAGGGCTTTGCACAAATCTGTAGTCTTCATCATCATGGAAGGATTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCTCTACAGATGTTTCCTTTTATGTATTTGGAGACCTCTCTGTTGTGAAGAGAAGACTATGATTATGTaGGTAACGTTTCTCTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: FLYRCFLLCIWRPLCCEEKTMIM*VTFLSS Trigger: ACTGGAGAGAAACGTTACCAACATAATCATAGTCTT...CTCTTCACAACAGAGAGGTCTCCAAATACATAAAAGGAAACATCTGTAGAGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR CCA 72 bp | TCCTTTAATGTAGTCAGAGATAACTGTGTTGTGCAATaGCTTCATCACTTCTATCATACTTGTAGGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: SFNVVRDNCVVQ*LHHFYHTCRIF Trigger: AAAGATCCTACAAGTATGATAGAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAAGGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CCA 90 bp | GGGCTGGGCAAAAGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTGAGACAACTCTGGCGTaGATAGGCTTTATTACACTG | + |
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Preference number: 4 (lower is better) Translates to: GLGKSPGRQTGDFGLLCSETTLA*IGFITL Trigger: CAGTGTAATAAAGCCTATCCACGCCAGAGTTGTCTC...AGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCTTTTGCCCAGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR TCA 90 bp | CAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCCTAGATGGTTCCGTACTCGAAGATAGGTaGGCTGTGCAAAGGCTTTAC | + |
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Preference number: 4 (lower is better) Translates to: QSPYHVKELYRGSFLDGSVLEDR*AVQRLY Trigger: GTAAAGCCTTTGCACAGCTCACCTATCTTCGAGTAC...GGAACCATCTAGGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CCA 90 bp | CAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCCTAGATGGTTCCAAGTCTCTTCTGAGATaGATCCAGCAAGGACCACTC | + |
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Preference number: 4 (lower is better) Translates to: QSPYHVKELYRGSFLDGSKSLLR*IQQGPL Trigger: GAGTGGTCCTTGCTGGATCCATCTCAGAAGAGACTT...GGAACCATCTAGGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR GCA 90 bp | CAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCCTAGATGGTTCCCGAGTGAAGTGTACATaGACATCATCAAAGGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: QSPYHVKELYRGSFLDGSRVKCT*TSSKVN Trigger: ATTGACCTTTGATGATGTGCATGTACACTTCACTCG...GGAACCATCTAGGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CCA 90 bp | CCCTCCAGTATATATTACTTGATGGGTTTTAAGATGACTGCTTTGTGTAAGGGCGCATTCGAAGATAGCTaGGATGTAAAAAGGCTTTAC | + |
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Preference number: 4 (lower is better) Translates to: PSSIYYLMGFKMTALCKGAFEDS*DVKRLY Trigger: GTAAAGCCTTTTTACATCCCAGCTATCTTCGAATGC...GCCCTTACACAAAGCAGTCATCTTAAAACCCATCAAGTAATATATACTGGAGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR TCA 90 bp | CAAAGCCCTTACCATGTTAAAGAACTTTATAGGGGTTCTTTCCTAGATGGTTCCGTGCTCGAAGATACTTaGGCTTTAAAAAGGCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: QSPYHVKELYRGSFLDGSVLEDT*ALKRLY Trigger: ATAAAGCCTTTTTAAAGCTCAAGTATCTTCGAGCAC...GGAACCATCTAGGAAAGAACCCCTATAAAGTTCTTTAACATGGTAAGGGCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR GCA 90 bp | CATTCTTGTATGTACTTTGAGATTATTGCCTTATGCAAAGGGTTTGTCACACTGGCAGGACTTCTTTCGTaGCTTCCATATCTTCTATCA | + |
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Preference number: 4 (lower is better) Translates to: HSCMYFEIIALCKGFVTLAGLLS*LPYLLS Trigger: TGATAGAAGATATGGAAGGCACGAAAGAAGTCCTGC...CAGTGTGACAAACCCTTTGCATAAGGCAATAATCTCAAAGTACATACAAGAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR GCA 90 bp | CCCTCCAGTATATATTACTTGATGGGTTTTAAGATGACTGCTTTGTGTAAGGGCCTATGTCTTCTTTCATaGATTCGAAGATTGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PSSIYYLMGFKMTALCKGLCLLS*IRRLLG Trigger: ACCCAACAATCTTCGAATGCATGAAAGAAGACATAG...GCCCTTACACAAAGCAGTCATCTTAAAACCCATCAAGTAATATATACTGGAGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR TCA 90 bp | CTTTCCTTTAATGTAGTCAGAGATAACTGTGTTGTGCAATGGCTTCATCACTTCGATGACTGTGATATTTaGAGGCTTTATTCCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: LSFNVVRDNCVVQWLHHFDDCDI*RLYSIV Trigger: CACAATGGAATAAAGCCTTCAAATATCACAGTCATC...GAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAAGGAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR GCA 90 bp | CATTCTTGTATGTACTTTGAGATTATTGCCTTATGCAAAGGGTTTGTCACACTGGAGAGTACTTTGACATaGAAGCACTTTACTATGTTG | + |
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Preference number: 4 (lower is better) Translates to: HSCMYFEIIALCKGFVTLESTLT*KHFTML Trigger: CAACATAGTAAAGTGCTTGCATGTCAAAGTACTCTC...CAGTGTGACAAACCCTTTGCATAAGGCAATAATCTCAAAGTACATACAAGAATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR TCA 90 bp | TTTAATGTAGTCAGAGATAACTGTGTTGTGCAATGGCTTCATCACTTCTATCATGTAATCGAAGATACCTaGGCTGTAAAAAGGCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: FNVVRDNCVVQWLHHFYHVIEDT*AVKRLY Trigger: ATAAAGCCTTTTTACAGCTCAGGTATCTTCGATTAC...ATGATAGAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| 3UTR CAA 72 bp | ATAGGGATCTTTCCAATATGCATTCTTGTATGTACTTaGAGATTATTGCCTTATGCAAAGGGTTTGTCACAC | + |
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Preference number: 4 (lower is better) Translates to: IGIFPICILVCT*RLLPYAKGLSH Trigger: GTGTGACAAACCCTTTGCATAAGGCAATAATCTCAAAGTACATACAAGAATGCATATTGGAAAGATCCCTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CAA 90 bp | GGGCTGGGCAAAAGCCCCGGGAGACAGACTGGTGACTTTGGCTTGCTATGCTCTTATTTGGAGAGTACTTaGACATGCAAGCACTTTACT | + |
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Preference number: 5 (lower is better) Translates to: GLGKSPGRQTGDFGLLCSYLEST*TCKHFT Trigger: AGTAAAGTGCTTGCATGTCAAAGTACTCTCCAAATA...AGAGCATAGCAAGCCAAAGTCACCAGTCTGTCTCCCGGGGCTTTTGCCCAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CAA 90 bp | TTTCTCTACAGATGTTTCCTTTTATGTATTTGGAGACCTCTCTGTTGTGAAGAGTCGAAGATAGTGGGGTaGCAAAAAGGCTTTACCACA | + |
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Preference number: 5 (lower is better) Translates to: FLYRCFLLCIWRPLCCEESKIVG*QKGFTT Trigger: TGTGGTAAAGCCTTTTTGCAACCCCACTATCTTCGA...CTCTTCACAACAGAGAGGTCTCCAAATACATAAAAGGAAACATCTGTAGAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CAA 90 bp | TTTCTCTACAGATGTTTCCTTTTATGTATTTGGAGACCTCTCTGTTGTGAAGAGTGCATTCGAAGATTGTaGGGTCGTAAAAAGGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: FLYRCFLLCIWRPLCCEECIRRL*GRKKAL Trigger: TAAAGCCTTTTTACGACCCAACAATCTTCGAATGCA...CTCTTCACAACAGAGAGGTCTCCAAATACATAAAAGGAAACATCTGTAGAGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CAA 90 bp | TTTCTCTACAGATGTTTCCTTTTATGTATTTGGAGACCTCTCTGTTGTGAAGAGTGTGCTCGAAGATACTaGAGCTTTAAAAAGGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: FLYRCFLLCIWRPLCCEECARRY*SFKKAL Trigger: TAAAGCCTTTTTAAAGCTCAAGTATCTTCGAGCACA...CTCTTCACAACAGAGAGGTCTCCAAATACATAAAAGGAAACATCTGTAGAGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CAA 90 bp | TTTAATGTAGTCAGAGATAACTGTGTTGTGCAATGGCTTCATCACTTCTATCATGTTTTTGTCTCCAGTTaGGTTTCTTTCAAGCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: FNVVRDNCVVQWLHHFYHVFVSS*VSFKLL Trigger: CAAAAGCTTGAAAGAAACCAAACTGGAGACAAAAAC...ATGATAGAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS-3UTR CAA 90 bp | TTTAATGTAGTCAGAGATAACTGTGTTGTGCAATGGCTTCATCACTTCTATCATAAGACTTCAGAGTTTTaGTCTCCAGTTTGGTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FNVVRDNCVVQWLHHFYHKTSEF*SPVWFL Trigger: AAGAAACCAAACTGGAGACAAAAACTCTGAAGTCTT...ATGATAGAAGTGATGAAGCCATTGCACAACACAGTTATCTCTGACTACATTAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS CAA 90 bp | CTCCCCAGCAGGACTTCTTTCGTGCCTTCCATATCTTCTATCATTTaGACAATGTTCTTCAATGTTATGGTCTTTCCAATGGTAGCCTAT | + |
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Preference number: 6 (lower is better) Translates to: LPSRTSFVPSISSII*TMFFNVMVFPMVAY Trigger: ATAGGCTACCATTGGAAAGACCATAACATTGAAGAACATTGTCAAAATGATAGAAGATATGGAAGGCACGAAAGAAGTCCTGCTGGGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS CAA 72 bp | TTGGAGAGTACTTTGACATGCAAGCACTTTACTATGTaGAAAGACTTCAGAGTTTTTGTCTCCAGTTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: LESTLTCKHFTM*KDFRVFVSSLV Trigger: AACCAAACTGGAGACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTTGCATGTCAAAGTACTCTCCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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| CDS CAA 72 bp | AGGACTTCTTTCGTGCCTTCCATATCTTCTATCATTTaGACAATGTTCTTCAATGTTATGGTCTTTCCAATG | + |
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Preference number: 6 (lower is better) Translates to: RTSFVPSISSII*TMFFNVMVFPM Trigger: CATTGGAAAGACCATAACATTGAAGAACATTGTCAAAATGATAGAAGATATGGAAGGCACGAAAGAAGTCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107992.2 |
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