Pregenerated sensors for ZFP974 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070709Ensembl transcript IDs: ENSMUST00000098639.9, ENSMUST00000129341.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGAGCCCACAAGAGAAGACCATTCAAATGCAGTTTACTTCAAAATaGAAGTCTTTATTCCAGCTAGCTCTGAGTACATTCATGTATTTG | + |
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Preference number: 1 (lower is better) Translates to: GSPQEKTIQMQFTSK*KSLFQLALSTFMYL Trigger: CAAATACATGAATGTACTCAGAGCTAGCTGGAATAAAGACTTTCATTTTGAAGTAAACTGCATTTGAATGGTCTTCTCTTGTGGGCTCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR TCA 90 bp | TTTCTGATGATGTCTAAACTCATCGTTTACAATAAAGACTTTTCCTaGTTCTTCTCATTCACATGGTTTCAAACCTCAATGGACTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: FLMMSKLIVYNKDFS*FFSFTWFQTSMDSL Trigger: CAGAGAGTCCATTGAGGTTTGAAACCATGTGAATGAGAAGAATCAGGAAAAGTCTTTATTGTAAACGATGAGTTTAGACATCATCAGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR CCA 90 bp | AATTGTCCTTGTATAGAAGATACAATAATACTGTGCACAACACCCTaGGTTAAATCAACACTGAAAACTCAATATAAAATAGGGCAAGGC | + |
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Preference number: 1 (lower is better) Translates to: NCPCIEDTIILCTTP*VKSTLKTQYKIGQG Trigger: GCCTTGCCCTATTTTATATTGAGTTTTCAGTGTTGATTTAACCCAGGGTGTTGTGCACAGTATTATTGTATCTTCTATACAAGGACAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | AGAACCCCCAACCAGCTCAGCTTGGAGGCAGTTTCTCTACTCTTTCCACAGAATAGCAAGAAAAAGAGATaGAAAAGCCTGTGGACTTTC | + |
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Preference number: 2 (lower is better) Translates to: RTPNQLSLEAVSLLFPQNSKKKR*KSLWTF Trigger: GAAAGTCCACAGGCTTTTCCATCTCTTTTTCTTGCT...ATTCTGTGGAAAGAGTAGAGAAACTGCCTCCAAGCTGAGCTGGTTGGGGGTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | TTAGAGGAAATCCCACATCTTATTACTACGTTGTTCAGGAGCTACAGGGGGAGCCTCTTCTACAGACCATaGGAACTAACCAAATACTCA | + |
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Preference number: 2 (lower is better) Translates to: LEEIPHLITTLFRSYRGSLFYRP*ELTKYS Trigger: TGAGTATTTGGTTAGTTCCCATGGTCTGTAGAAGAG...GCTCCCCCTGTAGCTCCTGAACAACGTAGTAATAAGATGTGGGATTTCCTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | AGAACCCCCAACCAGCTCAGCTTGGAGGCAGTTTCTCTACTCTTTCCACAGAATCCTTCGGAATATTTATaGTTCTGTAGTATAGATGAC | + |
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Preference number: 2 (lower is better) Translates to: RTPNQLSLEAVSLLFPQNPSEYL*FCSIDD Trigger: GTCATCTATACTACAGAACCATAAATATTCCGAAGG...ATTCTGTGGAAAGAGTAGAGAAACTGCCTCCAAGCTGAGCTGGTTGGGGGTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTCTGTGCACAACACCCTaGGTTAAATCAACACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: LLIHNKLDLLIELWHPPFLCTTP*VKSTLK Trigger: TTTCAGTGTTGATTTAACCCAGGGTGTTGTGCACAG...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR TCA 90 bp | AAACAGGATCAACCTTGTAAACTGTTGACAATTTTCAATCTAGGTGAGGATACAGGCCTGAGCTCAAATTaGAGTTCTTTCCACATTCCT | + |
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Preference number: 2 (lower is better) Translates to: KQDQPCKLLTIFNLGEDTGLSSN*SSFHIP Trigger: AGGAATGTGGAAAGAACTTCAATTTGAGCTCAGGCC...TGTATCCTCACCTAGATTGAAAATTGTCAACAGTTTACAAGGTTGATCCTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR TCA 90 bp | GGTCACCATATCCAGGGCAGATTAAAGTTCCCACATTATTTTAAGTCACAGTATATGTTAAAGAAGGCCTaGGCTCAAATTGAAGTTCTT | + |
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Preference number: 2 (lower is better) Translates to: GHHIQGRLKFPHYFKSQYMLKKA*AQIEVL Trigger: AAGAACTTCAATTTGAGCTCAGGCCTTCTTTAACAT...ATACTGTGACTTAAAATAATGTGGGAACTTTAATCTGCCCTGGATATGGTGACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR TCA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTGCTACCCTGAATTTTTaGCATGAAAATCTCAACCAA | + |
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Preference number: 2 (lower is better) Translates to: LLIHNKLDLLIELWHPPFATLNF*HENLNQ Trigger: TTGGTTGAGATTTTCATGTCAAAAATTCAGGGTAGC...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | AAACAGGATCAACCTTGTAAACTGTTGACAATTTTCAATCTAGGTGAGGATACAATCTTCACATGTGGGTaGAAGGCATTGAATTATAGG | + |
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Preference number: 2 (lower is better) Translates to: KQDQPCKLLTIFNLGEDTIFTCG*KALNYR Trigger: CCTATAATTCAATGCCTTCCACCCACATGTGAAGAT...TGTATCCTCACCTAGATTGAAAATTGTCAACAGTTTACAAGGTTGATCCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | AAAAGGCAACCTTCTAAGCAGCTGTCTAATTCATCTAAAGAAGTCTTAGAGAAAAGATGGAAAAGCCTGTaGACTTTCTTGTCCTATCAA | + |
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Preference number: 2 (lower is better) Translates to: KRQPSKQLSNSSKEVLEKRWKSL*TFLSYQ Trigger: TTGATAGGACAAGAAAGTCCACAGGCTTTTCCATCT...TTTCTCTAAGACTTCTTTAGATGAATTAGACAGCTGCTTAGAAGGTTGCCTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR CAA 90 bp | GTAGTAAGGGATAAAATGTCACGTCTACAACTTTTACTTATTGATTaGATAAGGAGTCTCAATACTACCACAGTTGGACTTAACGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: VVRDKMSRLQLLLID*IRSLNTTTVGLNVS Trigger: ACTGACGTTAAGTCCAACTGTGGTAGTATTGAGACTCCTTATCAAATCAATAAGTAAAAGTTGTAGACGTGACATTTTATCCCTTACTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | AAACAGGATCAACCTTGTAAACTGTTGACAATTTTCAATCTAGGTGAGGATACATTCTTCTCATTCACATaGTTTCAAACCTCAATGGAC | + |
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Preference number: 2 (lower is better) Translates to: KQDQPCKLLTIFNLGEDTFFSFT*FQTSMD Trigger: GTCCATTGAGGTTTGAAACCATGTGAATGAGAAGAA...TGTATCCTCACCTAGATTGAAAATTGTCAACAGTTTACAAGGTTGATCCTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CCA 90 bp | AAACAGGATCAACCTTGTAAACTGTTGACAATTTTCAATCTAGGTGAGGATACACTTTATCTTCACATGTaGGTGGAAGGCATTGAATTA | + |
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Preference number: 2 (lower is better) Translates to: KQDQPCKLLTIFNLGEDTLYLHM*VEGIEL Trigger: TAATTCAATGCCTTCCACCCACATGTGAAGATAAAG...TGTATCCTCACCTAGATTGAAAATTGTCAACAGTTTACAAGGTTGATCCTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CAA 90 bp | AGAACCCCCAACCAGCTCAGCTTGGAGGCAGTTTCTCTACTCTTTCCACAGAATATGTTTCTAGATAGGTaGGACAGAACATACAACCTA | + |
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Preference number: 3 (lower is better) Translates to: RTPNQLSLEAVSLLFPQNMFLDR*DRTYNL Trigger: TAGGTTGTATGTTCTGTCCAACCTATCTAGAAACAT...ATTCTGTGGAAAGAGTAGAGAAACTGCCTCCAAGCTGAGCTGGTTGGGGGTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR TCA 72 bp | TTCTCATTCCAAAGAGCTTCTGGCATTGACAGGATATaGCACACCAATGGTCACCATATCCAGGGCAGATTA | + |
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Preference number: 3 (lower is better) Translates to: FSFQRASGIDRI*HTNGHHIQGRL Trigger: TAATCTGCCCTGGATATGGTGACCATTGGTGTGTCATATCCTGTCAATGCCAGAAGCTCTTTGGAATGAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CAA 90 bp | AAACAGGATCAACCTTGTAAACTGTTGACAATTTTCAATCTAGGTGAGGATACATTTTCATACAATAGCTaGTCCACCTCCCTTACACGA | + |
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Preference number: 3 (lower is better) Translates to: KQDQPCKLLTIFNLGEDTFSYNS*STSLTR Trigger: TCGTGTAAGGGAGGTGGACAAGCTATTGTATGAAAA...TGTATCCTCACCTAGATTGAAAATTGTCAACAGTTTACAAGGTTGATCCTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR-3UTR CAA 90 bp | AAACAGGATCAACCTTGTAAACTGTTGACAATTTTCAATCTAGGTGAGGATACAAGTACATTCATGTATTaGGAACCCAAGAATAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: KQDQPCKLLTIFNLGEDTSTFMY*EPKNSP Trigger: AGGGCTATTCTTGGGTTCCAAATACATGAATGTACT...TGTATCCTCACCTAGATTGAAAATTGTCAACAGTTTACAAGGTTGATCCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR TCA 72 bp | GTGTATACTTTATCTTCACATGTGGGTGGAAGGCATTaGATTATAGGGTTTTACATCCTGAAATTTTTATGG | + |
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Preference number: 3 (lower is better) Translates to: VYTLSSHVGGRH*IIGFYILKFLW Trigger: CCATAAAAATTTCAGGATGTAAAACCCTATAATTCAATGCCTTCCACCCACATGTGAAGATAAAGTATACAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| 3UTR CAA 72 bp | TGGCATTTAGAGGAAATCCCACATCTTATTACTACGTaGTTCAGGAGCTACAGGGGGAGCTTTTGGACAAGC | + |
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Preference number: 4 (lower is better) Translates to: WHLEEIPHLITT*FRSYRGSFWTS Trigger: GCTTGTCCAAAAGCTCCCCCTGTAGCTCCTGAACAACGTAGTAATAAGATGTGGGATTTCCTCTAAATGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTGTTGGGACTTGTATCTaGAGGCTGACCCACAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LLIHNKLDLLIELWHPPFVGTCI*RLTHSA Trigger: AGCACTGTGGGTCAGCCTTCAGATACAAGTCCCAAC...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CCA 90 bp | GGTCACCATATCCAGGGCAGATTAAAGTTCCCACATTATTTTAAGTCACAGTATTGTCTTGTGAGCTGTTaGGGGAGTCTGAAGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GHHIQGRLKFPHYFKSQYCLVSC*GSLKAF Trigger: GAAGGCCTTCAGACTCCCCCAACAGCTCACAAGACA...ATACTGTGACTTAAAATAATGTGGGAACTTTAATCTGCCCTGGATATGGTGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | TTAGAGGAAATCCCACATCTTATTACTACGTTGTTCAGGAGCTACAGGGGGAGCATGCTGAGTAAAAGTTaGCCTACAACCAAAGCACTT | + |
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Preference number: 4 (lower is better) Translates to: LEEIPHLITTLFRSYRGSMLSKS*PTTKAL Trigger: AAGTGCTTTGGTTGTAGGTCAACTTTTACTCAGCAT...GCTCCCCCTGTAGCTCCTGAACAACGTAGTAATAAGATGTGGGATTTCCTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR GCA 90 bp | GGTCACCATATCCAGGGCAGATTAAAGTTCCCACATTATTTTAAGTCACAGTATGTGCCGAGTGAGGTATaGCAGAACAACAAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: GHHIQGRLKFPHYFKSQYVPSEV*QNNKGL Trigger: AAGGCCTTTGTTGTTCTGGCATACCTCACTCGGCAC...ATACTGTGACTTAAAATAATGTGGGAACTTTAATCTGCCCTGGATATGGTGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTGGTGTGTGGCAGTTCTaGATTTCTTGCCACATTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLIHNKLDLLIELWHPPFGVWQF*ISCHIP Trigger: AGGAATGTGGCAAGAAATTCAGAACTGCCACACACC...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | TTAGAGGAAATCCCACATCTTATTACTACGTTGTTCAGGAGCTACAGGGGGAGCGTGATCGGTAAAATTTaGCCTTTGACGAAAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: LEEIPHLITTLFRSYRGSVIGKI*PLTKAF Trigger: AAATGCTTTCGTCAAAGGTCAAATTTTACCGATCAC...GCTCCCCCTGTAGCTCCTGAACAACGTAGTAATAAGATGTGGGATTTCCTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CCA 90 bp | TTAGAGGAAATCCCACATCTTATTACTACGTTGTTCAGGAGCTACAGGGGGAGCCTCACTACATTTGTATaGTTTCACATCAGCATGGAT | + |
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Preference number: 4 (lower is better) Translates to: LEEIPHLITTLFRSYRGSLTTFV*FHISMD Trigger: ATCCATGCTGATGTGAAACCATACAAATGTAGTGAG...GCTCCCCCTGTAGCTCCTGAACAACGTAGTAATAAGATGTGGGATTTCCTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | GGTCACCATATCCAGGGCAGATTAAAGTTCCCACATTATTTTAAGTCACAGTATGCTGACCCACAGTGCTaGCATTCAAATGATTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: GHHIQGRLKFPHYFKSQYADPQC*HSNDFS Trigger: AGAGAAATCATTTGAATGTCAGCACTGTGGGTCAGC...ATACTGTGACTTAAAATAATGTGGGAACTTTAATCTGCCCTGGATATGGTGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTCTAAGGTCTAGTCCATaGACAAAGTCATTCCTACCT | + |
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Preference number: 4 (lower is better) Translates to: LLIHNKLDLLIELWHPPFLRSSP*TKSFLP Trigger: AGGTAGGAATGACTTTGTTCATGGACTAGACCTTAG...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTGGTTTCTCATCAGAATaGATTTTCCGATGGTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: LLIHNKLDLLIELWHPPFGFSSE*IFRWCN Trigger: ATTGCACCATCGGAAAATTCATTCTGATGAGAAACC...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR TCA 90 bp | AAAAGGCAACCTTCTAAGCAGCTGTCTAATTCATCTAAAGAAGTCTTAGAGAAACTACCTTCCATGCACTaGAAGAGTCTCACATCAGTA | + |
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Preference number: 4 (lower is better) Translates to: KRQPSKQLSNSSKEVLEKLPSMH*KSLTSV Trigger: TACTGATGTGAGACTCTTTCAGTGCATGGAAGGTAG...TTTCTCTAAGACTTCTTTAGATGAATTAGACAGCTGCTTAGAAGGTTGCCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CAA 90 bp | AAAAGGCAACCTTCTAAGCAGCTGTCTAATTCATCTAAAGAAGTCTTAGAGAAAATGTCTTGTGAGCTGTaGGGGGAGTCTGAAGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: KRQPSKQLSNSSKEVLEKMSCEL*GESEGL Trigger: AAGGCCTTCAGACTCCCCCAACAGCTCACAAGACAT...TTTCTCTAAGACTTCTTTAGATGAATTAGACAGCTGCTTAGAAGGTTGCCTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CAA 90 bp | CTACTTATACACAACAAACTAGACCTTTTAATAGAGCTCTGGCACCCACCATTTCTGATGTTTACTGAGTaGGGACTTGTATCTGAAGGC | + |
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Preference number: 5 (lower is better) Translates to: LLIHNKLDLLIELWHPPFLMFTE*GLVSEG Trigger: GCCTTCAGATACAAGTCCCAACTCAGTAAACATCAG...AAATGGTGGGTGCCAGAGCTCTATTAAAAGGTCTAGTTTGTTGTGTATAAGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CAA 90 bp | CTTAAGGAATGGGGAACAATTCAAATCCTTTCATGTTCATCCATGAGATTTATCTTACTGAGTTGGGACTaGTATCTGAAGGCTGACCCA | + |
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Preference number: 5 (lower is better) Translates to: LKEWGTIQILSCSSMRFILLSWD*YLKADP Trigger: TGGGTCAGCCTTCAGATACAAGTCCCAACTCAGTAA...GATAAATCTCATGGATGAACATGAAAGGATTTGAATTGTTCCCCATTCCTTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CAA 90 bp | GGTCACCATATCCAGGGCAGATTAAAGTTCCCACATTATTTTAAGTCACAGTATCTTTTTAGTAACCTTTaGACCAGCATCTCCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: GHHIQGRLKFPHYFKSQYLFSNL*TSISSF Trigger: AAAGGAGGAGATGCTGGTCAAAAGGTTACTAAAAAG...ATACTGTGACTTAAAATAATGTGGGAACTTTAATCTGCCCTGGATATGGTGACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS-3UTR CAA 90 bp | AAAAGGCAACCTTCTAAGCAGCTGTCTAATTCATCTAAAGAAGTCTTAGAGAAATGCATTCAAAGTGTTTaGCTTCCATGTGAGTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: KRQPSKQLSNSSKEVLEKCIQSV*LPCEFS Trigger: AGAAAACTCACATGGAAGCAAAACACTTTGAATGCA...TTTCTCTAAGACTTCTTTAGATGAATTAGACAGCTGCTTAGAAGGTTGCCTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098639.9 |
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| CDS CCA 72 bp | AGATATACTTCCAGCATCATAATCTGTCTCCAAATCTaGGCTCGGCCTGTCTGTTTCTTCCTTCACAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: RYTSSIIICLQI*ARPVCFFLHSH Trigger: ATGGCTGTGAAGGAAGAAACAGACAGGCCGAGCCCAGATTTGGAGACAGATTATGATGCTGGAAGTATATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098639.9 ENSMUST00000129341.2 |
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