Pregenerated sensors for ZFP972 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074529Ensembl transcript IDs: ENSMUST00000108934.9
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGTGTATGAGTTTCGACCCCAGAGCTCTGGTCTATGTGCTTTCTTaGTGTTGCTTTATTAAATCTTGCCTTCAACATTTTGAGTTCGGT | + |
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Preference number: 1 (lower is better) Translates to: RCMSFDPRALVYVLS*CCFIKSCLQHFEFG Trigger: ACCGAACTCAAAATGTTGAAGGCAAGATTTAATAAAGCAACAGCAAGAAAGCACATAGACCAGAGCTCTGGGGTCGAAACTCATACACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108934.9 |
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| 3UTR-3UTR GCA 90 bp | CTTGAGTTTTTCCTGTATAAGCCTGTGAAAAATTTGGCTCGTCGTCGATTCTCCGAGCTCTGGTCTATGTaGTTTCTTGCTGTTGCTTTA | + |
|
Preference number: 2 (lower is better) Translates to: LEFFLYKPVKNLARRRFSELWSM*FLAVAL Trigger: TAAAGCAACAGCAAGAAAGCACATAGACCAGAGCTC...GGAGAATCGACGACGAGCCAAATTTTTCACAGGCTTATACAGGAAAAACTCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000108934.9 |
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| 3UTR GCA 72 bp | AGTTTCGACCCCAGAGCTCTGGTCTATGTGCTTTCTTaGTGTTGCTTTATTAAATCTTGCCTTCAACATTTT | + |
|
Preference number: 3 (lower is better) Translates to: SFDPRALVYVLS*CCFIKSCLQHF Trigger: AAAATGTTGAAGGCAAGATTTAATAAAGCAACAGCAAGAAAGCACATAGACCAGAGCTCTGGGGTCGAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108934.9 |
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| CDS-3UTR TCA 90 bp | CTTGAGTTTTTCCTGTATAAGCCTGTGAAAAATTTGGCTCGTCGTCGATTCTCCCCCCCTCTTCCTGAGTaGAGTTCATATGCACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: LEFFLYKPVKNLARRRFSPPLPE*SSYARH Trigger: ATGACGTGCATATGAACTTCACTCAGGAAGAGGGGG...GGAGAATCGACGACGAGCCAAATTTTTCACAGGCTTATACAGGAAAAACTCAAG 46% GC, longest homopolymer 7 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000108934.9 |
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| 3UTR CAA 72 bp | AGTTACGTAGAATCCCTTGGCAGAACCCCTTGTCCCTaGGCAGAACCCCTTAGTTATGTAAACTTGTACTTT | + |
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Preference number: 4 (lower is better) Translates to: SYVESLGRTPCP*AEPLSYVNLYF Trigger: AAAGTACAAGTTTACATAACTAAGGGGTTCTGCCAAGGGACAAGGGGTTCTGCCAAGGGATTCTACGTAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108934.9 |
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