Pregenerated sensors for ZFP971 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074519Ensembl transcript IDs: ENSMUST00000108925.10, ENSMUST00000108926.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GAAAGGTATGTGGCATCTTTCAATACCCCTATGCTCACAAGAACTGTATCCATACCCACTCTTCCTGAGTaGAGTTCACATGTACGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: ERYVASFNTPMLTRTVSIPTLPE*SSHVRH Trigger: ATGACGTACATGTGAACTTCACTCAGGAAGAGTGGG...TATGGATACAGTTCTTGTGAGCATAGGGGTATTGAAAGATGCCACATACCTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108925.10 |
||
| CDS TCA 90 bp | AACTCAGAGTGTTGCTCTGCAGAAGAACTTCTTTCATGCCTTCCATaGCTTCTAGAAGTTTGGAAATGGTCTTCAATTGTATGTTCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: NSECCSAEELLSCLP*LLEVWKWSSIVCSS Trigger: GGAAGAACATACAATTGAAGACCATTTCCAAACTTCTAGAAGTCATGGAAGGCATGAAAGAAGTTCTTCTGCAGAGCAACACTCTGAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108926.3 |
||
| CDS-3UTR CAA 90 bp | GAAAGGTATGTGGCATCTTTCAATACCCCTATGCTCACAAGAACTGTATCCATAGGAAATGGTCTTCAATaGTATGTTCTTCCCAACTGT | + |
|
Preference number: 5 (lower is better) Translates to: ERYVASFNTPMLTRTVSIGNGLQ*YVLPNC Trigger: ACAGTTGGGAAGAACATACAATTGAAGACCATTTCC...TATGGATACAGTTCTTGTGAGCATAGGGGTATTGAAAGATGCCACATACCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108925.10 |
||
| CDS TCA 72 bp | TGTTGCTCTGCAGAAGAACTTCTTTCATGCCTTCCATaGCTTCTAGAAGTTTGGAAATGGTCTTCAATTGTA | + |
|
Preference number: 6 (lower is better) Translates to: CCSAEELLSCLP*LLEVWKWSSIV Trigger: TACAATTGAAGACCATTTCCAAACTTCTAGAAGTCATGGAAGGCATGAAAGAAGTTCTTCTGCAGAGCAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108926.3 |
||
| CDS CAA 72 bp | AGAACTTCTTTCATGCCTTCCATGACTTCTAGAAGTTaGGAAATGGTCTTCAATTGTATGTTCTTCCCAACT | + |
|
Preference number: 6 (lower is better) Translates to: RTSFMPSMTSRS*EMVFNCMFFPT Trigger: AGTTGGGAAGAACATACAATTGAAGACCATTTCCAAACTTCTAGAAGTCATGGAAGGCATGAAAGAAGTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108926.3 |
||