Pregenerated sensors for ZFP968 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078898Ensembl transcript IDs: ENSMUST00000109047.3, ENSMUST00000109048.3, ENSMUST00000131676.8
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAATGTCACTCAAAGTATGTTATACTGCATATCCTCTTGTTGTTCTaGAAAATTGAAAGGTATGTGGCATCTTTCAATACCCCTATGCTC | + |
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Preference number: 1 (lower is better) Translates to: ECHSKYVILHILLLF*KIERYVASFNTPML Trigger: GAGCATAGGGGTATTGAAAGATGCCACATACCTTTCAATTTTTCAGAACAACAAGAGGATATGCAGTATAACATACTTTGAGTGACATTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131676.8 |
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| 3UTR CAA 90 bp | ACTCAAAGTATGTTATACTGCATATCCTCTTGTTGTTCTGAAAAATaGAAAGGTATGTGGCATCTTTCAATACCCCTATGCTCACAAGGG | + |
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Preference number: 2 (lower is better) Translates to: TQSMLYCISSCCSEK*KGMWHLSIPLCSQG Trigger: CCCTTGTGAGCATAGGGGTATTGAAAGATGCCACATACCTTTCAATTTTTCAGAACAACAAGAGGATATGCAGTATAACATACTTTGAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131676.8 |
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| 3UTR-3UTR CAA 90 bp | TTGAAAGGTATGTGGCATCTTTCAATACCCCTATGCTCACAAGGGCTGTATCCAGTTTTAGACATATACTaGTCACCTAATCACTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: LKGMWHLSIPLCSQGLYPVLDIY*SPNHCV Trigger: CACACAGTGATTAGGTGACAAGTATATGTCTAAAAC...TGGATACAGCCCTTGTGAGCATAGGGGTATTGAAAGATGCCACATACCTTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131676.8 |
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| 3UTR-3UTR CAA 90 bp | ATTGAAAGGTATGTGGCATCTTTCAATACCCCTATGCTCACAAGGGCTGTATCCTCCACCAAACCATTTTaGAATCTTATGAACTGTCCA | + |
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Preference number: 3 (lower is better) Translates to: IERYVASFNTPMLTRAVSSTKPF*NLMNCP Trigger: TGGACAGTTCATAAGATTCAAAAATGGTTTGGTGGA...GGATACAGCCCTTGTGAGCATAGGGGTATTGAAAGATGCCACATACCTTTCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131676.8 |
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| 3UTR CCA 72 bp | ATATCCTCTTGTTGTTCTGAAAAATTGAAAGGTATGTaGCATCTTTCAATACCCCTATGCTCACAAGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: ISSCCSEKLKGM*HLSIPLCSQGL Trigger: CAGCCCTTGTGAGCATAGGGGTATTGAAAGATGCCACATACCTTTCAATTTTTCAGAACAACAAGAGGATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131676.8 |
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| CDS CAA 72 bp | TTCTTCCCAACTGTAACCATGTTTGGAGTTCTGAGCTaGACTAACCTCCTCTCACAACACCCAGTAGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: FFPTVTMFGVLS*TNLLSQHPVES Trigger: TGACTCTACTGGGTGTTGTGAGAGGAGGTTAGTCAAGCTCAGAACTCCAAACATGGTTACAGTTGGGAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109048.3 |
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| CDS CAA 72 bp | CTTCGTAGACTTTCTCTTCTGTATGATCTTTTGTCTTaGGAGGTCACTCCTTCCTGCAAAGGCTTCCATGAC | + |
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Preference number: 6 (lower is better) Translates to: LRRLSLLYDLLS*EVTPSCKGFHD Trigger: GTCATGGAAGCCTTTGCAGGAAGGAGTGACCTCCAAAGACAAAAGATCATACAGAAGAGAAAGTCTACGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109048.3 |
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| CDS CAA 72 bp | AGATGCCTTCGTAGACTTTCTCTTCTGTATGATCTTTaGTCTTTGGAGGTCACTCCTTCCTGCAAAGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: RCLRRLSLLYDL*SLEVTPSCKGF Trigger: GAAGCCTTTGCAGGAAGGAGTGACCTCCAAAGACAAAAGATCATACAGAAGAGAAAGTCTACGAAGGCATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109048.3 |
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| CDS CAA 90 bp | TATAACATTAGATGCCTTCGTAGACTTTCTCTTCTGTATGATCTTTaGTCTTTGGAGGTCACTCCTTCCTGCAAAGGCTTCCATGACTTC | + |
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Preference number: 6 (lower is better) Translates to: YNIRCLRRLSLLYDL*SLEVTPSCKGFHDF Trigger: GAAGTCATGGAAGCCTTTGCAGGAAGGAGTGACCTCCAAAGACAAAAGATCATACAGAAGAGAAAGTCTACGAAGGCATCTAATGTTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109048.3 |
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| CDS CAA 72 bp | AGAACGTCTTTCATGCCTTCCATGACTTCTAGAAGTTaGGAAATGGTCTTCAATTGTATGTTCTTCCCAACT | + |
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Preference number: 6 (lower is better) Translates to: RTSFMPSMTSRS*EMVFNCMFFPT Trigger: AGTTGGGAAGAACATACAATTGAAGACCATTTCCAAACTTCTAGAAGTCATGGAAGGCATGAAAGACGTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109047.3 |
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