Pregenerated sensors for ZFP965 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078896Ensembl transcript IDs: ENSMUST00000109002.9, ENSMUST00000109042.10, ENSMUST00000109043.9, ENSMUST00000143490.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 72 bp | ATGTTATACTGCATATCCTCTTGTTGTTCTGAAAAATaGAAAGGTATGTGGCATCTTTCAATACCCCTATGC | + |
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Preference number: 4 (lower is better) Translates to: MLYCISSCCSEK*KGMWHLSIPLC Trigger: GCATAGGGGTATTGAAAGATGCCACATACCTTTCAATTTTTCAGAACAACAAGAGGATATGCAGTATAACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109042.10 |
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| 3UTR CAA 72 bp | TACCCTAATTCTCATTATGATTTTCAGCAGTTTGAGTaGGTAAATGTCCCCAATAATGTTGGGAAACTAAGT | + |
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Preference number: 4 (lower is better) Translates to: YPNSHYDFQQFE*VNVPNNVGKLS Trigger: ACTTAGTTTCCCAACATTATTGGGGACATTTACCAACTCAAACTGCTGAAAATCATAATGAGAATTAGGGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109042.10 |
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| CDS GCA 90 bp | CTCTCTGGTATGTGTTCATTTATATACATGGAGATCAATGCTTGCTaGAAAGACTTTATAACATTAGATGCCTTCATAGACTTTCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LSGMCSFIYMEINAC*KDFITLDAFIDFLF Trigger: GAAGAGAAAGTCTATGAAGGCATCTAATGTTATAAAGTCTTTGCAGCAAGCATTGATCTCCATGTATATAAATGAACACATACCAGAGAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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| CDS GCA 90 bp | TTCCTCTCTGGTATGTGTTCATTTATATACATGGAGATCAATGCTTaGTGCAAAGACTTTATAACATTAGATGCCTTCATAGACTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: FLSGMCSFIYMEINA*CKDFITLDAFIDFL Trigger: GAGAAAGTCTATGAAGGCATCTAATGTTATAAAGTCTTTGCAGCAAGCATTGATCTCCATGTATATAAATGAACACATACCAGAGAGGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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| CDS GCA 90 bp | AAGGTTCCTCTCTGGTATGTGTTCATTTATATACATGGAGATCAATaGTTGCTGCAAAGACTTTATAACATTAGATGCCTTCATAGACTT | + |
|
Preference number: 5 (lower is better) Translates to: KVPLWYVFIYIHGDQ*LLQRLYNIRCLHRL Trigger: AAGTCTATGAAGGCATCTAATGTTATAAAGTCTTTGCAGCAAGCATTGATCTCCATGTATATAAATGAACACATACCAGAGAGGAACCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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| CDS GCA 72 bp | GGCTTTACCACATGGAATAAACTCAGAGTGTTGCTCTaGAGAAGAACGTCTTTCATGCCTTCCAAGACTTCT | + |
|
Preference number: 6 (lower is better) Translates to: GFTTWNKLRVLL*RRTSFMPSKTS Trigger: AGAAGTCTTGGAAGGCATGAAAGACGTTCTTCTGCAGAGCAACACTCTGAGTTTATTCCATGTGGTAAAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109002.9 |
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| CDS GCA 72 bp | AACTCAGAGTGTTGCTCTGCAGAAGAACGTCTTTCATaGCTTCCAAGACTTCTAGAAGTTTGGAAATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: NSECCSAEERLS*LPRLLEVWKWS Trigger: AGACCATTTCCAAACTTCTAGAAGTCTTGGAAGGCATGAAAGACGTTCTTCTGCAGAGCAACACTCTGAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109002.9 |
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| CDS CAA 72 bp | CTTCATAGACTTTCTCTTCTGTATGATCTTTTGTCTTaGGAGGTCACTCCTTCCTGCAAAGGCTTCCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: LHRLSLLYDLLS*EVTPSCKGFQD Trigger: GTCTTGGAAGCCTTTGCAGGAAGGAGTGACCTCCAAAGACAAAAGATCATACAGAAGAGAAAGTCTATGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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| CDS CAA 72 bp | AGATGCCTTCATAGACTTTCTCTTCTGTATGATCTTTaGTCTTTGGAGGTCACTCCTTCCTGCAAAGGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: RCLHRLSLLYDL*SLEVTPSCKGF Trigger: GAAGCCTTTGCAGGAAGGAGTGACCTCCAAAGACAAAAGATCATACAGAAGAGAAAGTCTATGAAGGCATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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| CDS CCA 72 bp | TCCTTCCTGCAAAGGCTTCCAAGACTTCTAGAAGTTTaGAAATGGTCTTCAATTGTATGTTCTTCCCAACTG | + |
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Preference number: 6 (lower is better) Translates to: SFLQRLPRLLEV*KWSSIVCSSQL Trigger: CAGTTGGGAAGAACATACAATTGAAGACCATTTCCAAACTTCTAGAAGTCTTGGAAGCCTTTGCAGGAAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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| CDS CCA 72 bp | TTCATTGTGAAGACTCTTCCAAGACTTCTAGAAGTTTaGAAATGGTCTTCAATTGTATGTTCTTCCCAACTG | + |
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Preference number: 6 (lower is better) Translates to: FIVKTLPRLLEV*KWSSIVCSSQL Trigger: CAGTTGGGAAGAACATACAATTGAAGACCATTTCCAAACTTCTAGAAGTCTTGGAAGAGTCTTCACAATGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143490.2 |
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| CDS CAA 90 bp | GTTCCTCTCTGGTATGTGTTCATTTATATACATGGAGATCAATGCTaGCTGCAAAGACTTTATAACATTAGATGCCTTCATAGACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: VPLWYVFIYIHGDQC*LQRLYNIRCLHRLS Trigger: AGAAAGTCTATGAAGGCATCTAATGTTATAAAGTCTTTGCAGCAAGCATTGATCTCCATGTATATAAATGAACACATACCAGAGAGGAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109043.9 |
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