Pregenerated sensors for ZFP943 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053347Ensembl transcript IDs: ENSMUST00000055349.15, ENSMUST00000153985.8, ENSMUST00000174015.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTGCTGTATATTTGTCAGGGGCCTAGAAGGAGCTCATGTATGTTaGCTGGTTGGTGGCTCCATGTCGGACAGATCTCAGATGCACCTA | + |
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Preference number: 1 (lower is better) Translates to: LCCIFVRGLEGAHVC*LVGGSMSDRSQMHL Trigger: TAGGTGCATCTGAGATCTGTCCGACATGGAGCCACCAACCAGGCAACATACATGAGCTCCTTCTAGGCCCCTGACAAATATACAGCAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR GCA 90 bp | CATGTTGTACATCTTCTCCCACTGAGGCCAGACCAGGCAGTCCTTTaGTGTATATTTGTCAGGGGCCTAGAAGGAGCTCATGTATGTTGC | + |
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Preference number: 1 (lower is better) Translates to: HVVHLLPLRPDQAVL*CIFVRGLEGAHVCC Trigger: GCAACATACATGAGCTCCTTCTAGGCCCCTGACAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGAAGATGTACAACATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCCCACTGAGGCCAGACCAGGCAGTCCTTTGCTGTATATTTGTCAGGGGCCTCTCATGTATGTTGCCTaGTTGGTGGCTCCATGTCGG | + |
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Preference number: 2 (lower is better) Translates to: SPTEARPGSPLLYICQGPLMYVA*LVAPCR Trigger: CCGACATGGAGCCACCAACCAGGCAACATACATGAG...AGGCCCCTGACAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR CAA 90 bp | CCATGTTGTACATCTTCTCCCACTGAGGCCAGACCAGGCAGTCCTTaGCTGTATATTTGTCAGGGGCCTAGAAGGAGCTCATGTATGTTG | + |
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Preference number: 2 (lower is better) Translates to: PCCTSSPTEARPGSP*LYICQGPRRSSCML Trigger: CAACATACATGAGCTCCTTCTAGGCCCCTGACAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGAAGATGTACAACATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAGAGAGGTCTTTCTTGTTTCAAAATCATTACATGGATGCTTAGAAGAACCAGAGAGTGGCAAGGGCTaGGAGTGGGGAAGACATCCT | + |
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Preference number: 2 (lower is better) Translates to: SREVFLVSKSLHGCLEEPESGKG*EWGRHP Trigger: AGGATGTCTTCCCCACTCCCAGCCCTTGCCACTCTC...TGGTTCTTCTAAGCATCCATGTAATGATTTTGAAACAAGAAAGACCTCTCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAGAGAGGTCTTTCTTGTTTCAAAATCATTACATGGATGCTTAGAAGAACCAAACCCTCAAGAGACTTaGGGCCCCAGAGAGTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: SREVFLVSKSLHGCLEEPNPQET*GPREWQ Trigger: TTGCCACTCTCTGGGGCCTCAAGTCTCTTGAGGGTT...TGGTTCTTCTAAGCATCCATGTAATGATTTTGAAACAAGAAAGACCTCTCTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR CCA 90 bp | AAGAGAGGTCTTTCTTGTTTCAAAATCATTACATGGATGCTTAGAAGAACCACAGGCAAGGGCTGGGAGTaGGGAAGACATCCTCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: KRGLSCFKIITWMLRRTTGKGWE*GRHPLE Trigger: TTCAAGAGGATGTCTTCCCCACTCCCAGCCCTTGCC...TGTGGTTCTTCTAAGCATCCATGTAATGATTTTGAAACAAGAAAGACCTCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR GCA 90 bp | TCAAGAGAGGTCTTTCTTGTTTCAAAATCATTACATGGATGCTTAGAAGAACCAGGAGCTCATGTATGTTaGCTGGTTGGTGGCTCCATG | + |
|
Preference number: 2 (lower is better) Translates to: SREVFLVSKSLHGCLEEPGAHVC*LVGGSM Trigger: CATGGAGCCACCAACCAGGCAACATACATGAGCTCC...TGGTTCTTCTAAGCATCCATGTAATGATTTTGAAACAAGAAAGACCTCTCTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR GCA 90 bp | AGATTTATTGGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCCTCATACAGAGTTTCTaGATGGTTTCTCTCCTCTAT | + |
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Preference number: 2 (lower is better) Translates to: RFIGVTHRSMGKELVVKALIQSF*MVSLLY Trigger: ATAGAGGAGAGAAACCATGCAGAAACTCTGTATGAG...GGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCCAATAAATCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR GCA 90 bp | TCAAGAGAGGTCTTTCTTGTTTCAAAATCATTACATGGATGCTTAGAAGAACCAGACCAGGCAGTCCTTTaGTGTATATTTGTCAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: SREVFLVSKSLHGCLEEPDQAVL*CIFVRG Trigger: GCCCCTGACAAATATACAGCAAAGGACTGCCTGGTC...TGGTTCTTCTAAGCATCCATGTAATGATTTTGAAACAAGAAAGACCTCTCTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR CAA 90 bp | TGGTTCATAATTTATCTGACAATTCTGCATTCACATTCTACCTCTTaGTTCCAGATAGAGTACAGCATTGCACATAGGCTGCAGGATGTC | + |
|
Preference number: 2 (lower is better) Translates to: WFIIYLTILHSHSTS*FQIEYSIAHRLQDV Trigger: GACATCCTGCAGCCTATGTGCAATGCTGTACTCTATCTGGAACAAAGAGGTAGAATGTGAATGCAGAATTGTCAGATAAATTATGAACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| 3UTR-3UTR CCA 90 bp | GGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCAAAAGATTTAACATCCTATCTTTGTaGCTTAGTTTGCCATATCGT | + |
|
Preference number: 2 (lower is better) Translates to: GVTHRSMGKELVVKAKRFNILSL*LSLPYR Trigger: ACGATATGGCAAACTAAGCCACAAAGATAGGATGTT...AAATCTTTTGGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR CCA 90 bp | GGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCAAAAGATTTATTACTTATGAATACTaGACATTTGGAGGAAACTGC | + |
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Preference number: 2 (lower is better) Translates to: GVTHRSMGKELVVKAKRFITYEY*TFGGNC Trigger: GCAGTTTCCTCCAAATGTCCAGTATTCATAAGTAAT...AAATCTTTTGGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR TCA 90 bp | CCACAAAAATACCGCTTGCATAAAGCATATACCAGACTTTTCAAAGTGGAAACTCCTCTATGTGTTCTCTaGTGTCTTCTAAGAGATAAG | + |
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Preference number: 2 (lower is better) Translates to: PQKYRLHKAYTRLFKVETPLCVL*CLLRDK Trigger: CTTATCTCTTAGAAGACATCAGAGAACACATAGAGG...AGTTTCCACTTTGAAAAGTCTGGTATATGCTTTATGCAAGCGGTATTTTTGTGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR CCA 90 bp | CCACAAAAATACCGCTTGCATAAAGCATATACCAGACTTTTCAAAGTGGAAACTTACAGAGTTTCTGCATaGTTTCTCTCCTCTATGTGT | + |
|
Preference number: 2 (lower is better) Translates to: PQKYRLHKAYTRLFKVETYRVSA*FLSSMC Trigger: ACACATAGAGGAGAGAAACCATGCAGAAACTCTGTA...AGTTTCCACTTTGAAAAGTCTGGTATATGCTTTATGCAAGCGGTATTTTTGTGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR CCA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTTGTGGCTTTCAGACCTGAGATTCTaGAAAAGAATTTTCCTCATA | + |
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Preference number: 2 (lower is better) Translates to: LHICKHIYRIKNILSLWLSDLRF*KRIFLI Trigger: TATGAGGAAAATTCTTTTCCAGAATCTCAGGTCTGA...AAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR CAA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTaGTGGCTTAGTTTGCCATATCGTCTTTTAAGAAGTTTGAGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: LHICKHIYRIKNILS*WLSLPYRLLRSLSF Trigger: AAAACTCAAACTTCTTAAAAGACGATATGGCAAACTAAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR CCA 90 bp | AAGAGAGGTCTTTCTTGTTTCAAAATCATTACATGGATGCTTAGAAGAACCACAGAGTTATCCTTATTCTaGAAGTCTCTAGACATTTCA | + |
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Preference number: 2 (lower is better) Translates to: KRGLSCFKIITWMLRRTTELSLF*KSLDIS Trigger: TGAAATGTCTAGAGACTTCCAGAATAAGGATAACTC...TGTGGTTCTTCTAAGCATCCATGTAATGATTTTGAAACAAGAAAGACCTCTCTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR TCA 72 bp | GGACAGATCTCAGATGCACCTAACCCTCAAGAGACTTaGGGCCCCAGAGAGTGGCAAGGGCTGGGAGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: GQISDAPNPQET*GPREWQGLGVG Trigger: CCCCACTCCCAGCCCTTGCCACTCTCTGGGGCCTCAAGTCTCTTGAGGGTTAGGTGCATCTGAGATCTGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR CCA 72 bp | AGACTTGAGGCCCCAGAGAGTGGCAAGGGCTGGGAGTaGGGAAGACATCCTCTTGAAGACAGTGAGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: RLEAPESGKGWE*GRHPLEDSEEE Trigger: CTCCTCCTCACTGTCTTCAAGAGGATGTCTTCCCCACTCCCAGCCCTTGCCACTCTCTGGGGCCTCAAGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR GCA 72 bp | CATCTTCTCCCACTGAGGCCAGACCAGGCAGTCCTTTaGTGTATATTTGTCAGGGGCCTAGAAGGAGCTCAT | + |
|
Preference number: 3 (lower is better) Translates to: HLLPLRPDQAVL*CIFVRGLEGAH Trigger: ATGAGCTCCTTCTAGGCCCCTGACAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGAAGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR GCA 72 bp | ATATTTGTCAGGGGCCTAGAAGGAGCTCATGTATGTTaGCTGGTTGGTGGCTCCATGTCGGACAGATCTCAG | + |
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Preference number: 3 (lower is better) Translates to: IFVRGLEGAHVC*LVGGSMSDRSQ Trigger: CTGAGATCTGTCCGACATGGAGCCACCAACCAGGCAACATACATGAGCTCCTTCTAGGCCCCTGACAAATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR TCA 72 bp | CATGATATAAAAACCATGTTGTACATCTTCTCCCACTaGGGCCAGACCAGGCAGTCCTTTGCTGTATATTTG | + |
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Preference number: 3 (lower is better) Translates to: HDIKTMLYIFSH*GQTRQSFAVYL Trigger: CAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGAAGATGTACAACATGGTTTTTATATCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR-3UTR CAA 90 bp | GGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCAAAAGATTTAAGAACATCCTATCTTaGTGGCTTAGTTTGCCATAT | + |
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Preference number: 3 (lower is better) Translates to: GVTHRSMGKELVVKAKRFKNILS*WLSLPY Trigger: ATATGGCAAACTAAGCCACAAAGATAGGATGTTCTT...AAATCTTTTGGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR CAA 90 bp | AGCCTCACAAAATACCTTTACAAAGTACTTGAATCTGTGTGTCCTTTGGAATGTTCCTTAAACATAGTCTaGGAACTCCTCAGAGAATTC | + |
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Preference number: 3 (lower is better) Translates to: SLTKYLYKVLESVCPLECSLNIV*ELLREF Trigger: GAATTCTCTGAGGAGTTCCAAGACTATGTTTAAGGA...ACATTCCAAAGGACACACAGATTCAAGTACTTTGTAAAGGTATTTTGTGAGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| 3UTR GCA 72 bp | TATATTCATAACAATTCTCTAGTGCAGAGCCTGAAGTaGCACAAAAATACCGCTTGCATAAAGCATATACCA | + |
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Preference number: 3 (lower is better) Translates to: YIHNNSLVQSLK*HKNTACIKHIP Trigger: TGGTATATGCTTTATGCAAGCGGTATTTTTGTGGCACTTCAGGCTCTGCACTAGAGAATTGTTATGAATATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR-3UTR CAA 90 bp | AGCCTCACAAAATACCTTTACAAAGTACTTGAATCTGTGTGTCCTTTGGAATGTACACTGGGATTCTGTTaGATAGAAACCAATACTTCA | + |
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Preference number: 3 (lower is better) Translates to: SLTKYLYKVLESVCPLECTLGFC*IETNTS Trigger: TGAAGTATTGGTTTCTATCAAACAGAATCCCAGTGT...ACATTCCAAAGGACACACAGATTCAAGTACTTTGTAAAGGTATTTTGTGAGGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| 3UTR CCA 72 bp | AAGCACATCTACAGGATAAAGAACATCCTATCTTTGTaGCTTAGTTTGCCATATCGTCTTTTAAGAAGTTTG | + |
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Preference number: 3 (lower is better) Translates to: KHIYRIKNILSL*LSLPYRLLRSL Trigger: CAAACTTCTTAAAAGACGATATGGCAAACTAAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR CCA 72 bp | AGAAACCAATACTTCATAATGGTACATTCTTCCATGTaGACCTCACATGTGTATGTTATATTACCTACAAAC | + |
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Preference number: 3 (lower is better) Translates to: RNQYFIMVHSSM*TSHVYVILPTN Trigger: GTTTGTAGGTAATATAACATACACATGTGAGGTCCACATGGAAGAATGTACCATTATGAAGTATTGGTTTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| CDS-3UTR TCA 90 bp | TCTCCCACTGAGGCCAGACCAGGCAGTCCTTTGCTGTATATTTGTCAGGGGCCTCCACAGCCACATCCTTaGATGTTAACAGACCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SPTEARPGSPLLYICQGPPQPHP*MLTDPG Trigger: CCCAGGGTCTGTTAACATTCAAGGATGTGGCTGTGG...AGGCCCCTGACAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| 3UTR CAA 72 bp | ACATCTTCTCCCACTGAGGCCAGACCAGGCAGTCCTTaGCTGTATATTTGTCAGGGGCCTAGAAGGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: TSSPTEARPGSP*LYICQGPRRSS Trigger: TGAGCTCCTTCTAGGCCCCTGACAAATATACAGCAAAGGACTGCCTGGTCTGGCCTCAGTGGGAGAAGATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153985.8 |
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| CDS-3UTR TCA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTTGTGGCTTCCACAGCCACATCCTTaGATGTTAACAGACCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LHICKHIYRIKNILSLWLPQPHP*MLTDPG Trigger: CCCAGGGTCTGTTAACATTCAAGGATGTGGCTGTGG...AAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR TCA 90 bp | AGCCTCACAAAATACCTTTACAAAGTACTTGAATCTGTGTGTCCTTTGGAATGTCCACAGCCACATCCTTaGATGTTAACAGACCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SLTKYLYKVLESVCPLECPQPHP*MLTDPG Trigger: CCCAGGGTCTGTTAACATTCAAGGATGTGGCTGTGG...ACATTCCAAAGGACACACAGATTCAAGTACTTTGTAAAGGTATTTTGTGAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| CDS-3UTR TCA 90 bp | AGATTTATTGGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCGGTCGCCTTTCTGAGTaGAACATTTGTCACATTCAC | + |
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Preference number: 4 (lower is better) Translates to: RFIGVTHRSMGKELVVKAGRLSE*NICHIH Trigger: GTGAATGTGACAAATGTTTCACTCAGAAAGGCGACC...GGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCCAATAAATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR TCA 90 bp | GGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCAAAAGATTTGGGTGTGTTCATGAATaGGTTTTCCAAGTTCATGAC | + |
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Preference number: 4 (lower is better) Translates to: GVTHRSMGKELVVKAKRFGCVHE*VFQVHD Trigger: GTCATGAACTTGGAAAACTCATTCATGAACACACCC...AAATCTTTTGGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR TCA 90 bp | AGATTTATTGGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCGATCTCCTTTACGGGTaGAGCATTTGTCACATTTAC | + |
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Preference number: 4 (lower is better) Translates to: RFIGVTHRSMGKELVVKADLLYG*SICHIY Trigger: GTAAATGTGACAAATGCTTCACCCGTAAAGGAGATC...GGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCCAATAAATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR CAA 72 bp | TCTAGTGCAGAGCCTGAAGTGCCACAAAAATACCGCTaGCATAAAGCATATACCAGACTTTTCAAAGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: SSAEPEVPQKYR*HKAYTRLFKVE Trigger: TTCCACTTTGAAAAGTCTGGTATATGCTTTATGCAAGCGGTATTTTTGTGGCACTTCAGGCTCTGCACTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR CCA 90 bp | CCACAAAAATACCGCTTGCATAAAGCATATACCAGACTTTTCAAAGTGGAAACTCTAAGACCACCTTTGTaGGTAAAGCATTTGCCACAT | + |
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Preference number: 4 (lower is better) Translates to: PQKYRLHKAYTRLFKVETLRPPL*VKHLPH Trigger: ATGTGGCAAATGCTTTACCCACAAAGGTGGTCTTAG...AGTTTCCACTTTGAAAAGTCTGGTATATGCTTTATGCAAGCGGTATTTTTGTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR CAA 72 bp | ATTTATCTGACAATTCTGCATTCACATTCTACCTCTTaGTTCCAGATAGAGTACAGCATTGCACATAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: IYLTILHSHSTS*FQIEYSIAHRL Trigger: CAGCCTATGTGCAATGCTGTACTCTATCTGGAACAAAGAGGTAGAATGTGAATGCAGAATTGTCAGATAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| CDS-3UTR TCA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTTGTGGCTTGAATGTCTTTCTGGGTaGAACATTTGTTACATTCAC | + |
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Preference number: 4 (lower is better) Translates to: LHICKHIYRIKNILSLWLECLSG*NICYIH Trigger: GTGAATGTAACAAATGTTTCACCCAGAAAGACATTC...AAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR GCA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTTGTGGCTTCACAGTTTTTACATCTaGAAGGTTCTTTGGTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: LHICKHIYRIKNILSLWLHSFYI*KVLWCS Trigger: TGAACACCAAAGAACCTTGCAGATGTAAAAACTGTG...AAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR CCA 90 bp | CCACAAAAATACCGCTTGCATAAAGCATATACCAGACTTTTCAAAGTGGAAACTCCAAGACTGCATTTTTaGGTAAAACATTTGTCGCAT | + |
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Preference number: 4 (lower is better) Translates to: PQKYRLHKAYTRLFKVETPRLHF*VKHLSH Trigger: ATGCGACAAATGTTTTACCCAAAAATGCAGTCTTGG...AGTTTCCACTTTGAAAAGTCTGGTATATGCTTTATGCAAGCGGTATTTTTGTGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| 3UTR CAA 72 bp | GCGAATATAGCCTCACAAAATACCTTTACAAAGTACTaGAATCTGTGTGTCCTTTGGAATGTTGAATGTGTT | + |
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Preference number: 4 (lower is better) Translates to: ANIASQNTFTKY*NLCVLWNVECV Trigger: AACACATTCAACATTCCAAAGGACACACAGATTCAAGTACTTTGTAAAGGTATTTTGTGAGGCTATATTCGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| 3UTR CAA 72 bp | TGGACCTCACATGTGTATGTTATATTACCTACAAACTaGCTGTTTATGACTCCATTATGTAATCCTTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: WTSHVYVILPTN*LFMTPLCNPFS Trigger: GGAAAAAGGATTACATAATGGAGTCATAAACAGCAAGTTTGTAGGTAATATAACATACACATGTGAGGTCCA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174015.8 |
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| CDS-3UTR CAA 90 bp | GGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCAAAAGATTTCATCTGCAAGGTTCTTaGGTGTTCATAGAACCATGT | + |
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Preference number: 5 (lower is better) Translates to: GVTHRSMGKELVVKAKRFHLQGS*VFIEPC Trigger: ACATGGTTCTATGAACACCAAAGAACCTTGCAGATG...AAATCTTTTGGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR CAA 90 bp | AGATTTATTGGAGTTACACATAGGAGTATGGGCAAGGAGTTAGTGGTCAAAGCCTTGCGTGTAAAGCATTaGGTGCATTCAGTACATTTG | + |
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Preference number: 5 (lower is better) Translates to: RFIGVTHRSMGKELVVKALRVKH*VHSVHL Trigger: CAAATGTACTGAATGCACCAAATGCTTTACACGCAA...GGCTTTGACCACTAACTCCTTGCCCATACTCCTATGTGTAACTCCAATAAATCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR CAA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTTGTGGCTTACCAAGACTGCATTTTaGGGTAAAACATTTGTCGCA | + |
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Preference number: 5 (lower is better) Translates to: LHICKHIYRIKNILSLWLTKTAF*GKTFVA Trigger: TGCGACAAATGTTTTACCCAAAAATGCAGTCTTGGT...AAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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| CDS-3UTR CAA 90 bp | CTGCATATCTGTAAGCACATCTACAGGATAAAGAACATCCTATCTTTGTGGCTTTTCAGGGCAAAACATTaGTCACATTCACTACACTTA | + |
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Preference number: 5 (lower is better) Translates to: LHICKHIYRIKNILSLWLFRAKH*SHSLHL Trigger: TAAGTGTAGTGAATGTGACAAATGTTTTGCCCTGAA...AAGCCACAAAGATAGGATGTTCTTTATCCTGTAGATGTGCTTACAGATATGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055349.15 |
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