Pregenerated sensors for ZFP940 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050855Ensembl transcript IDs: ENSMUST00000085792.5, ENSMUST00000108223.8
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGGCAGTGGGGGATTTGAAGCATGAGGTTGGCATGGTAACAACCTaGCAGTGGGAACCTAGTGAGCTGGGTGGAGAGACTGTGGAGTTC | + |
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Preference number: 1 (lower is better) Translates to: KAVGDLKHEVGMVTT*QWEPSELGGETVEF Trigger: GAACTCCACAGTCTCTCCACCCAGCTCACTAGGTTCCCACTGGCAGGTTGTTACCATGCCAACCTCATGCTTCAAATCCCCCACTGCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 90 bp | TCCTTCACTCAGTGGCTCATCTGGGTTCAAGAGAGAAAGGTATGGTaGCAAAGTTTCCCAGAGGTGCACCACAAAGGCAGTGGGGGATTT | + |
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Preference number: 1 (lower is better) Translates to: SFTQWLIWVQERKVW*QSFPEVHHKGSGGF Trigger: AAATCCCCCACTGCCTTTGTGGTGCACCTCTGGGAAACTTTGTCACCATACCTTTCTCTCTTGAACCCAGATGAGCCACTGAGTGAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 90 bp | TCTGGGTTCAAGAGAGAAAGGTATGGTGACAAAGTTTCCCAGAGGTaGACCACAAAGGCAGTGGGGGATTTGAAGCATGAGGTTGGCATG | + |
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Preference number: 1 (lower is better) Translates to: SGFKRERYGDKVSQR*TTKAVGDLKHEVGM Trigger: CATGCCAACCTCATGCTTCAAATCCCCCACTGCCTTTGTGGTGCACCTCTGGGAAACTTTGTCACCATACCTTTCTCTCTTGAACCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR CCA 90 bp | ATCACTGAGAAACACTGCTCCATTGCCTTGCCCACTGCAAGGGCTTaGCCTAAACTGTGGACAGAGGATACCCAGAGAGTTAAATGTCCT | + |
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Preference number: 1 (lower is better) Translates to: ITEKHCSIALPTARA*PKLWTEDTQRVKCP Trigger: AGGACATTTAACTCTCTGGGTATCCTCTGTCCACAGTTTAGGCCAAGCCCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 90 bp | CTAAATAAACTCTATTCTACACTGTACCCATCGCCAATCAATGGATaGTACCTCGCAGGGAAGGGATGCCTCAGCATGAGCCTGCGAAGG | + |
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Preference number: 1 (lower is better) Translates to: LNKLYSTLYPSPING*YLAGKGCLSMSLRR Trigger: CCTTCGCAGGCTCATGCTGAGGCATCCCTTCCCTGCGAGGTATCATCCATTGATTGGCGATGGGTACAGTGTAGAATAGAGTTTATTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 90 bp | GAGGATACCCAGAGAGTTAAATGTCCTATATTGCCTAAGTCAAGGTaGGAGAAAAGAGGCCAGCCAGGAACATGTAGAGAGATGGGGCAA | + |
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Preference number: 1 (lower is better) Translates to: EDTQRVKCPILPKSR*EKRGQPGTCREMGQ Trigger: TTGCCCCATCTCTCTACATGTTCCTGGCTGGCCTCTTTTCTCTCACCTTGACTTAGGCAATATAGGACATTTAACTCTCTGGGTATCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 90 bp | CTAAACTGTGGACAGAGGATACCCAGAGAGTTAAATGTCCTATATTaGCTAAGTCAAGGTGAGAGAAAAGAGGCCAGCCAGGAACATGTA | + |
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Preference number: 1 (lower is better) Translates to: LNCGQRIPRELNVLY*LSQGERKEASQEHV Trigger: TACATGTTCCTGGCTGGCCTCTTTTCTCTCACCTTGACTTAGGCAATATAGGACATTTAACTCTCTGGGTATCCTCTGTCCACAGTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 90 bp | CTAGCATCTGAAAAGGGAAATGAACAAGAAGTTTCAGACATCTCATaGGCACAAAAACCTCTAGGTAGTTTCAACGTACTCTCCCTGACT | + |
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Preference number: 1 (lower is better) Translates to: LASEKGNEQEVSDIS*AQKPLGSFNVLSLT Trigger: AGTCAGGGAGAGTACGTTGAAACTACCTAGAGGTTTTTGTGCTCATGAGATGTCTGAAACTTCTTGTTCATTTCCCTTTTCAGATGCTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 90 bp | CAGGGAATCTCCTGCCTCTGTCTAACTCCCAAAGTTCAAATCTTTTaGTACCAGATGTTCCACTTTCTATCTCTTGCTAATTTCCTTCTA | + |
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Preference number: 1 (lower is better) Translates to: QGISCLCLTPKVQIF*YQMFHFLSLANFLL Trigger: TAGAAGGAAATTAGCAAGAGATAGAAAGTGGAACATCTGGTAGCAAAAGATTTGAACTTTGGGAGTTAGACAGAGGCAGGAGATTCCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR CCA 90 bp | AGACAGAAACTCCAAAGCCTAACAATGAACTTCTCCAAGAAAATATaGGCACAGCAACAAGACTGTCTAGATTGTGGTATGATAATCACT | + |
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Preference number: 1 (lower is better) Translates to: RQKLQSLTMNFSKKI*AQQQDCLDCGMIIT Trigger: AGTGATTATCATACCACAATCTAGACAGTCTTGTTGCTGTGCCCATATTTTCTTGGAGAAGTTCATTGTTAGGCTTTGGAGTTTCTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR CAA 90 bp | GGTGACAAAGTTTCCCAGAGGTGCACCACAAAGGCAGTGGGGGATTaGAAGCATGAGGTTGGCATGGTAACAACCTGCCAGTGGGAACCT | + |
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Preference number: 2 (lower is better) Translates to: GDKVSQRCTTKAVGD*KHEVGMVTTCQWEP Trigger: AGGTTCCCACTGGCAGGTTGTTACCATGCCAACCTCATGCTTCAAATCCCCCACTGCCTTTGTGGTGCACCTCTGGGAAACTTTGTCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR TCA 90 bp | GTACCCATCGCCAATCAATGGATGATACCTCGCAGGGAAGGGATGCCTCAGCATGTGGTTGCTGGGATTTaGACTCAGGACCTCTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: VPIANQWMIPRREGMPQHVVAGI*TQDLWK Trigger: CTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCAC...ATGCTGAGGCATCCCTTCCCTGCGAGGTATCATCCATTGATTGGCGATGGGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | GATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGGGACAGGGAACCTAGTGAGCTaGGTGGAGAGACTGTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: DLNSGPLEEQSVLLTTGTGNLVS*VERLWS Trigger: ACTCCACAGTCTCTCCACCCAGCTCACTAGGTTCCC...TGTCCCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | AGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATGTAACAACCTGCCAGTaGGAACCTAGTGAGCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: RASDPITDGCEPPCGCWDVTTCQ*EPSELG Trigger: ACCCAGCTCACTAGGTTCCCACTGGCAGGTTGTTAC...ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGCCTGCGAAGGCACCCCTCCCACCTCATCATACCATGCTCCTTCAAATATGCTTGGCCTAAACTGTaGACAGAGGATACCCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: MSLRRHPSHLIIPCSFKYAWPKL*TEDTQR Trigger: TCTCTGGGTATCCTCTGTCCACAGTTTAGGCCAAGC...ATATTTGAAGGAGCATGGTATGATGAGGTGGGAGGGGTGCCTTCGCAGGCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | AGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATAGTGCTCTTAACCACTaGGACAACTCTCCAGCCCTA | + |
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Preference number: 2 (lower is better) Translates to: RASDPITDGCEPPCGCWDSALNH*DNSPAL Trigger: TAGGGCTGGAGAGTTGTCCCAGTGGTTAAGAGCACT...ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCACTGGCTTTTTATAAGAGCATGCTGTACACGTGCTTGCAAAGGATGTGGTACTTTCCCACATCCCTaGGACTCAGGGCTTGCCACT | + |
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Preference number: 2 (lower is better) Translates to: RHWLFIRACCTRACKGCGTFPHP*DSGLAT Trigger: AGTGGCAAGCCCTGAGTCCCAGGGATGTGGGAAAGT...ACCACATCCTTTGCAAGCACGTGTACAGCATGCTCTTATAAAAAGCCAGTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGCAGTCAGTGCTCTTAACCACTGGGACAACTCTCCAGCCCTATCAAACATAGAACATGTAGAGAGATaGGGCAAAGGAAGGGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: RAVSALNHWDNSPALSNIEHVER*GKGRGE Trigger: CTCTCCCCTTCCTTTGCCCCATCTCTCTACATGTTC...TATGTTTGATAGGGCTGGAGAGTTGTCCCAGTGGTTAAGAGCACTGACTGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR GCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTAGGCCTACCTGGCTATTaGCAGGTAACTATTGGACCA | + |
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Preference number: 2 (lower is better) Translates to: EYTVAIFRHTRRGHQIPLGLPGY*QVTIGP Trigger: TGGTCCAATAGTTACCTGGCAATAGCCAGGTAGGCC...TAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | CTAGATTGTGGTATGATAATCACTGAGAAACACTGCTCCATTGCCTTGCCCACTTGGGTGGAGAGACTGTaGAGTTCTGAGTCAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: LDCGMIITEKHCSIALPTWVERL*SSESVS Trigger: GGAGACTGACTCAGAACTCCACAGTCTCTCCACCCA...AGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACAATCTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGGTATGATAATCACTGAGAAACACTGCTCCATTGCCTTGCCCACTGCAAGGAAAGGAGCCAATCATTaGATGAGTAGGCGGGACTTC | + |
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Preference number: 2 (lower is better) Translates to: CGMIITEKHCSIALPTARKGANH*MSRRDF Trigger: GAAGTCCCGCCTACTCATCCAATGATTGGCTCCTTT...CCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR GCA 90 bp | GAAGCTTATTATGACAGACAGAAACTCCAAAGCCTAACAATGAACTTCTCCAAGGGCATGGTAACAACCTaGCAGTGGGAACCTAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: EAYYDRQKLQSLTMNFSKGMVTT*QWEPSE Trigger: CTCACTAGGTTCCCACTGGCAGGTTGTTACCATGCC...CTTGGAGAAGTTCATTGTTAGGCTTTGGAGTTTCTGTCTGTCATAATAAGCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTGTCTAACTCCCAAAGTTCAAATCTTTTGCTACCAGATGTTCCACTTTCTAGGCTTGCCACTAATGTaGATATTCCAGTGTGGGTAC | + |
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Preference number: 2 (lower is better) Translates to: LCLTPKVQIFCYQMFHFLGLPLM*IFQCGY Trigger: GTACCCACACTGGAATATTCACATTAGTGGCAAGCC...TAGAAAGTGGAACATCTGGTAGCAAAAGATTTGAACTTTGGGAGTTAGACAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR-3UTR GCA 90 bp | CTAGATTGTGGTATGATAATCACTGAGAAACACTGCTCCATTGCCTTGCCCACTATTCCTCCGTTTTGGTaGTGTTCTTGTAAACCAATT | + |
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Preference number: 2 (lower is better) Translates to: LDCGMIITEKHCSIALPTIPPFW*CSCKPI Trigger: AATTGGTTTACAAGAACAGCACCAAAACGGAGGAAT...AGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACAATCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | GAAGCTTATTATGACAGACAGAAACTCCAAAGCCTAACAATGAACTTCTCCAAGACTCAGTGGCTCATCTaGGTTCAAGAGAGAAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: EAYYDRQKLQSLTMNFSKTQWLI*VQERKV Trigger: TACCTTTCTCTCTTGAACCCAGATGAGCCACTGAGT...CTTGGAGAAGTTCATTGTTAGGCTTTGGAGTTTCTGTCTGTCATAATAAGCTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CCA 90 bp | ATCCACAGTAACTTTCATTTCCTAATCATCCTTATTGCTCTTTACTCCCAAGTTTTTTCCTTCACTCAGTaGCTCATCTGGGTTCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: IHSNFHFLIILIALYSQVFSFTQ*LIWVQE Trigger: CTCTTGAACCCAGATGAGCCACTGAGTGAAGGAAAA...AACTTGGGAGTAAAGAGCAATAAGGATGATTAGGAAATGAAAGTTACTGTGGAT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR TCA 90 bp | ATCCACAGTAACTTTCATTTCCTAATCATCCTTATTGCTCTTTACTCCCAAGTTTGGTATGATAATCACTaGGAAACACTGCTCCATTGC | + |
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Preference number: 2 (lower is better) Translates to: IHSNFHFLIILIALYSQVWYDNH*ETLLHC Trigger: GCAATGGAGCAGTGTTTCTCAGTGATTATCATACCA...AACTTGGGAGTAAAGAGCAATAAGGATGATTAGGAAATGAAAGTTACTGTGGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 72 bp | ATGGATGATACCTCGCAGGGAAGGGATGCCTCAGCATaGGCCTGCGAAGGCACCCCTCCCACCTCATCATAC | + |
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Preference number: 3 (lower is better) Translates to: MDDTSQGRDASA*ACEGTPPTSSY Trigger: GTATGATGAGGTGGGAGGGGTGCCTTCGCAGGCTCATGCTGAGGCATCCCTTCCCTGCGAGGTATCATCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 72 bp | ACTGGGAGGTTTATTGAGGAGGGAGCATACAGAGGCTaGCTCTGGGCAAGGGTGGAGGGGAAAAGAACAGGG | + |
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Preference number: 3 (lower is better) Translates to: TGRFIEEGAYRG*LWARVEGKRTG Trigger: CCCTGTTCTTTTCCCCTCCACCCTTGCCCAGAGGCAGCCTCTGTATGCTCCCTCCTCAATAAACCTCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR CCA 72 bp | ATCCTGGCAGCTGGTGATGATGTATCCTGTGATCCCTaGGTCCCTGAGGTTGATGGTGGAGATGCCTGGTTG | + |
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Preference number: 3 (lower is better) Translates to: ILAAGDDVSCDP*VPEVDGGDAWL Trigger: CAACCAGGCATCTCCACCATCAACCTCAGGGACCCAGGGATCACAGGATACATCATCACCAGCTGCCAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR-3UTR CAA 90 bp | CTCACTGGGAGGTTTATTGAGGAGGGAGCATACAGAGGCTGCCTCTGGGCAAGGGCCTTCAGCTATTTATaGATGGGTGATGACCCCACA | + |
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Preference number: 3 (lower is better) Translates to: LTGRFIEEGAYRGCLWARAFSYL*MGDDPT Trigger: TGTGGGGTCATCACCCATCAATAAATAGCTGAAGGC...CCTTGCCCAGAGGCAGCCTCTGTATGCTCCCTCCTCAATAAACCTCCCAGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR-3UTR CAA 90 bp | AGAGCAGTCAGTGCTCTTAACCACTGGGACAACTCTCCAGCCCTATCAAACATACACTGCTCCATTGCCTaGCCCACTGCAAGGGCTTGG | + |
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Preference number: 3 (lower is better) Translates to: RAVSALNHWDNSPALSNIHCSIA*PTARAW Trigger: CCAAGCCCTTGCAGTGGGCAAGGCAATGGAGCAGTG...TATGTTTGATAGGGCTGGAGAGTTGTCCCAGTGGTTAAGAGCACTGACTGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR CCA 72 bp | AAACACTGCTCCATTGCCTTGCCCACTGCAAGGGCTTaGCCTAAACTGTGGACAGAGGATACCCAGAGAGTT | + |
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Preference number: 3 (lower is better) Translates to: KHCSIALPTARA*PKLWTEDTQRV Trigger: AACTCTCTGGGTATCCTCTGTCCACAGTTTAGGCCAAGCCCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 72 bp | CTCTATTCTACACTGTACCCATCGCCAATCAATGGATaGTACCTCGCAGGGAAGGGATGCCTCAGCATGAGC | + |
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Preference number: 3 (lower is better) Translates to: LYSTLYPSPING*YLAGKGCLSMS Trigger: GCTCATGCTGAGGCATCCCTTCCCTGCGAGGTATCATCCATTGATTGGCGATGGGTACAGTGTAGAATAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 72 bp | GTACACGTGCTTGCAAAGGATGTGGTGAGAGTGCGTTaGATCCTGGCAGCTGGTGATGATGTATCCTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: VHVLAKDVVRVR*ILAAGDDVSCD Trigger: ATCACAGGATACATCATCACCAGCTGCCAGGATGCAACGCACTCTCACCACATCCTTTGCAAGCACGTGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR GCA 72 bp | GATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGACCTCTGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DPITDGCEPPCG*WDLNSGPLEEQ Trigger: CTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 72 bp | CACTGGCTTTTTATAAGAGCATGCTGTACACGTGCTTaGAAAGGATGTGGTGAGAGTGCGTTGCATCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: HWLFIRACCTRA*KGCGESALHPG Trigger: GCCAGGATGCAACGCACTCTCACCACATCCTTTGCAAGCACGTGTACAGCATGCTCTTATAAAAAGCCAGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR-3UTR CAA 90 bp | TCAGTGGCTCATCTGGGTTCAAGAGAGAAAGGTATGGTGACAAAGTTTCCCAGAAAGGCAGTGGGGGATTaGAAGCATGAGGTTGGCATG | + |
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Preference number: 3 (lower is better) Translates to: SVAHLGSREKGMVTKFPRKAVGD*KHEVGM Trigger: CATGCCAACCTCATGCTTCAAATCCCCCACTGCCTT...TCTGGGAAACTTTGTCACCATACCTTTCTCTCTTGAACCCAGATGAGCCACTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 72 bp | TGTCTAGATTGTGGTATGATAATCACTGAGAAACACTaGTCCATTGCCTTGCCCACTGCAAGGGCTTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: CLDCGMIITEKH*SIALPTARAWP Trigger: AGGCCAAGCCCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACAATCTAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CAA 90 bp | CTAGATTGTGGTATGATAATCACTGAGAAACACTGCTCCATTGCCTTGCCCACTAGGCCTACCTGGCTATaGCCAGGTAACTATTGGACC | + |
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Preference number: 3 (lower is better) Translates to: LDCGMIITEKHCSIALPTRPTWL*PGNYWT Trigger: GGTCCAATAGTTACCTGGCAATAGCCAGGTAGGCCT...AGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACAATCTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR-3UTR CAA 90 bp | GAAGCTTATTATGACAGACAGAAACTCCAAAGCCTAACAATGAACTTCTCCAAGAGAAACACTGCTCCATaGCCTTGCCCACTGCAAGGG | + |
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Preference number: 3 (lower is better) Translates to: EAYYDRQKLQSLTMNFSKRNTAP*PCPLQG Trigger: CCCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCT...CTTGGAGAAGTTCATTGTTAGGCTTTGGAGTTTCTGTCTGTCATAATAAGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR TCA 72 bp | GCAACAAGACTGTCTAGATTGTGGTATGATAATCACTaGGAAACACTGCTCCATTGCCTTGCCCACTGCAAG | + |
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Preference number: 3 (lower is better) Translates to: ATRLSRLWYDNH*ETLLHCLAHCK Trigger: CTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACAATCTAGACAGTCTTGTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR GCA 72 bp | CTCTCTATAAGGAGGCACTGGCTTTTTATAAGAGCATaGTGTACACGTGCTTGCAAAGGATGTGGTGAGAGT | + |
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Preference number: 3 (lower is better) Translates to: LSIRRHWLFIRA*CTRACKGCGES Trigger: ACTCTCACCACATCCTTTGCAAGCACGTGTACAGCATGCTCTTATAAAAAGCCAGTGCCTCCTTATAGAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR TCA 72 bp | CCTTCTATTTCAGCTAATAGGCCTTCAGCTATTTATTaGTGGGTGATGACCCCACACAGTACACAATGGATT | + |
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Preference number: 3 (lower is better) Translates to: PSISANRPSAIY*WVMTPHSTQWI Trigger: AATCCATTGTGTACTGTGTGGGGTCATCACCCATCAATAAATAGCTGAAGGCCTATTAGCTGAAATAGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR CCA 72 bp | CTCCAAAGCCTAACAATGAACTTCTCCAAGAAAATATaGGCACAGCAACAAGACTGTCTAGATTGTGGTATG | + |
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Preference number: 3 (lower is better) Translates to: LQSLTMNFSKKI*AQQQDCLDCGM Trigger: CATACCACAATCTAGACAGTCTTGTTGCTGTGCCCATATTTTCTTGGAGAAGTTCATTGTTAGGCTTTGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR CCA 90 bp | TGTGGTATGATAATCACTGAGAAACACTGCTCCATTGCCTTGCCCACTGCAAGGTTGCCCTCCAGTGCATaGCCGGCCAGGCTGTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: CGMIITEKHCSIALPTARLPSSA*PARLSE Trigger: CTCTGACAGCCTGGCCGGCCATGCACTGGAGGGCAA...CCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| 3UTR CAA 72 bp | GTTTCCCAGAGGTGCACCACAAAGGCAGTGGGGGATTaGAAGCATGAGGTTGGCATGGTAACAACCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VSQRCTTKAVGD*KHEVGMVTTCQ Trigger: CTGGCAGGTTGTTACCATGCCAACCTCATGCTTCAAATCCCCCACTGCCTTTGTGGTGCACCTCTGGGAAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR TCA 90 bp | CTGGCAGCTGGTGATGATGTATCCTGTGATCCCTGGGTCCCTGAGGTTGATGGTAACAAAAAGTCCCACTaGGACGAGGTGGCTGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: LAAGDDVSCDPWVPEVDGNKKSH*DEVAVA Trigger: AGCTACAGCCACCTCGTCTCAGTGGGACTTTTTGTT...ACCATCAACCTCAGGGACCCAGGGATCACAGGATACATCATCACCAGCTGCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | CTCACTGGGAGGTTTATTGAGGAGGGAGCATACAGAGGCTGCCTCTGGGCAAGGTACCCTGGTTCACAGTaGGCACTTTTTCATAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: LTGRFIEEGAYRGCLWARYPGSQ*ALFHRR Trigger: TCGCCTATGAAAAAGTGCTCACTGTGAACCAGGGTA...CCTTGCCCAGAGGCAGCCTCTGTATGCTCCCTCCTCAATAAACCTCCCAGTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | GCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCTTGCCACATGACTGGTCAGGCTTaGGTCACAGTGAAAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: ACTPDVDFPTSLGLRACHMTGQA*VTVKSF Trigger: AAAGCTTTTCACTGTGACTCAAGCCTGACCAGTCAT...GTGGCAAGCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | GCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCTTGCCACGTAAGATGTGCTCTTTaGCCAAAGGCCTTTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: ACTPDVDFPTSLGLRACHVRCAL*PKAFSQ Trigger: CTGTGAAAAGGCCTTTGGTCAAAGAGCACATCTTAC...GTGGCAAGCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NSGPLEEQSVL Trigger: GAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR TCA 90 bp | TCAGTGGCTCATCTGGGTTCAAGAGAGAAAGGTATGGTGACAAAGTTTCCCAGACTGGAGCTGTCCCACTaGGACGAGGTGGCTGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: SVAHLGSREKGMVTKFPRLELSH*DEVAVA Trigger: AGCTACAGCCACCTCGTCTCAGTGGGACAGCTCCAG...TCTGGGAAACTTTGTCACCATACCTTTCTCTCTTGAACCCAGATGAGCCACTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR CCA 90 bp | GTACCCATCGCCAATCAATGGATGATACCTCGCAGGGAAGGGATGCCTCAGCATCTGTATAAACTCCTCTaGTCCAGGCTCAGACACTCC | + |
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Preference number: 4 (lower is better) Translates to: VPIANQWMIPRREGMPQHLYKLL*SRLRHS Trigger: GGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAG...ATGCTGAGGCATCCCTTCCCTGCGAGGTATCATCCATTGATTGGCGATGGGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR TCA 90 bp | CTCACTGGGAGGTTTATTGAGGAGGGAGCATACAGAGGCTGCCTCTGGGCAAGGCGACTAAGATTTGAATaGCAACCAAAAGCCTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: LTGRFIEEGAYRGCLWARRLRFE*QPKALP Trigger: TGGCAAGGCTTTTGGTTGTCATTCAAATCTTAGTCG...CCTTGCCCAGAGGCAGCCTCTGTATGCTCCCTCCTCAATAAACCTCCCAGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CCA 90 bp | GGTGCAGCCTCGCCTCGAGCTTTTCTACCTGGCCTCTTTGTTTCTAGAACAATGGAATATTCTGATGACTaGTCAGGCTTGAGCCGCGAC | + |
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Preference number: 4 (lower is better) Translates to: GAASPRAFLPGLFVSRTMEYSDD*SGLSRD Trigger: GTCGCGGCTCAAGCCTGACCAGTCATCAGAATATTC...CATTGTTCTAGAAACAAAGAGGCCAGGTAGAAAAGCTCGAGGCGAGGCTGCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | GCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCTTGCCACTCTTGTTCTGAGAACTaGAATCTATGTCTGGATAAG | + |
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Preference number: 4 (lower is better) Translates to: ACTPDVDFPTSLGLRACHSCSEN*NLCLDK Trigger: CTTATCCAGACATAGATTTCAGTTCTCAGAACAAGA...GTGGCAAGCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | GGTGCAGCCTCGCCTCGAGCTTTTCTACCTGGCCTCTTTGTTTCTAGAACAATGGAGATGGGATTTCTGTaGAAACGCCTTTCCACATCC | + |
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Preference number: 4 (lower is better) Translates to: GAASPRAFLPGLFVSRTMEMGFL*KRLSTS Trigger: GGATGTGGAAAGGCGTTTTCACAGAAATCCCATCTC...CATTGTTCTAGAAACAAAGAGGCCAGGTAGAAAAGCTCGAGGCGAGGCTGCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| 3UTR CAA 72 bp | GGTATGATAATCACTGAGAAACACTGCTCCATTGCCTaGCCCACTGCAAGGGCTTGGCCTAAACTGTGGACA | + |
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Preference number: 4 (lower is better) Translates to: GMIITEKHCSIA*PTARAWPKLWT Trigger: TGTCCACAGTTTAGGCCAAGCCCTTGCAGTGGGCAAGGCAATGGAGCAGTGTTTCTCAGTGATTATCATACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR TCA 90 bp | GTTGTTAGTTGCCTATCCTCGGTTTCACGCTTCTGTCTCCTCCAGAGTTCAGGGGCCCTAAGATGTGAATaGAACCTAAAAAGCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VVSCLSSVSRFCLLQSSGALRCE*NLKSLP Trigger: TGGAAGGCTTTTTAGGTTTCATTCACATCTTAGGGC...CCCTGAACTCTGGAGGAGACAGAAGCGTGAAACCGAGGATAGGCAACTAACAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR GCA 90 bp | GGTGCAGCCTCGCCTCGAGCTTTTCTACCTGGCCTCTTTGTTTCTAGAACAATGATTCATATGCTTTCTTaGCAGCATCAGCTGCATGGT | + |
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Preference number: 4 (lower is better) Translates to: GAASPRAFLPGLFVSRTMIHMLS*QHQLHG Trigger: ACCATGCAGCTGATGCTGGCAAGAAAGCATATGAAT...CATTGTTCTAGAAACAAAGAGGCCAGGTAGAAAAGCTCGAGGCGAGGCTGCACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CCA 90 bp | AGGCACTGGCTTTTTATAAGAGCATGCTGTACACGTGCTTGCAAAGGATGTGGTCTGTATAAACTCCTCTaGTCCAGGCTCAGACACTCC | + |
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Preference number: 4 (lower is better) Translates to: RHWLFIRACCTRACKGCGLYKLL*SRLRHS Trigger: GGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAG...ACCACATCCTTTGCAAGCACGTGTACAGCATGCTCTTATAAAAAGCCAGTGCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | CAGATGTTCCACTTTCTATCTCTTGCTAATTTCCTTCTATTTCAGCTAATAGGCGGCCTCTCACCGGTGTaGATTCTGCGATGTCGCGTC | + |
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Preference number: 4 (lower is better) Translates to: QMFHFLSLANFLLFQLIGGLSPV*ILRCRV Trigger: GACGCGACATCGCAGAATTCACACCGGTGAGAGGCC...GCCTATTAGCTGAAATAGAAGGAAATTAGCAAGAGATAGAAAGTGGAACATCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CCA 90 bp | GAAGCTTATTATGACAGACAGAAACTCCAAAGCCTAACAATGAACTTCTCCAAGTCTGCGTTGCTTCGCTaGAGCTGTCCCACTGAGACG | + |
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Preference number: 4 (lower is better) Translates to: EAYYDRQKLQSLTMNFSKSALLR*SCPTET Trigger: CGTCTCAGTGGGACAGCTCCAGCGAAGCAACGCAGA...CTTGGAGAAGTTCATTGTTAGGCTTTGGAGTTTCTGTCTGTCATAATAAGCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR GCA 90 bp | CAATTAAGCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCTTTTTCATAGGCGACTaGCAGTTGCTTAAAATATTC | + |
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Preference number: 4 (lower is better) Translates to: QLSLHSRCRLSHIPGTQGFFIGD*QLLKIF Trigger: GAATATTTTAAGCAACTGGCAGTCGCCTATGAAAAA...GCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGCTTAATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR GCA 90 bp | AAACTGTTGTTAGTTGCCTATCCTCGGTTTCACGCTTCTGTCTCCTCCAGAGTTCTTGCCAGCATCAGCTaGATGGTAATGAATATTCTG | + |
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Preference number: 4 (lower is better) Translates to: KLLLVAYPRFHASVSSRVLASIS*MVMNIL Trigger: CAGAATATTCATTACCATGCAGCTGATGCTGGCAAG...AACTCTGGAGGAGACAGAAGCGTGAAACCGAGGATAGGCAACTAACAACAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CCA 90 bp | AGGCACTGGCTTTTTATAAGAGCATGCTGTACACGTGCTTGCAAAGGATGTGGTCCTGCATTCAGTCTCTaGTGGTTGTTGAAAACTATA | + |
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Preference number: 4 (lower is better) Translates to: RHWLFIRACCTRACKGCGPAFSL*WLLKTI Trigger: TATAGTTTTCAACAACCACCAGAGACTGAATGCAGG...ACCACATCCTTTGCAAGCACGTGTACAGCATGCTCTTATAAAAAGCCAGTGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | CTCTGTCTAACTCCCAAAGTTCAAATCTTTTGCTACCAGATGTTCCACTTTCTAGTGCGCCCTAAGATGTaGATGAAACCTAAAAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LCLTPKVQIFCYQMFHFLVRPKM*MKPKKP Trigger: AGGCTTTTTAGGTTTCATTCACATCTTAGGGCGCAC...TAGAAAGTGGAACATCTGGTAGCAAAAGATTTGAACTTTGGGAGTTAGACAGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR GCA 90 bp | TTCCTTGGACTATTTTCTTTCCTCAGTATGAATGCTCTGGTGACAATTAAGCCTTTTGAAACTGATTTTTaGCATCCCAGCCATCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: FLGLFSFLSMNALVTIKPFETDF*HPSHLQ Trigger: TTGGAGATGGCTGGGATGGCAAAAATCAGTTTCAAA...AGGCTTAATTGTCACCAGAGCATTCATACTGAGGAAAGAAAATAGTCCAAGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR GCA 90 bp | CTCTGTCTAACTCCCAAAGTTCAAATCTTTTGCTACCAGATGTTCCACTTTCTAATGTTTGGTAAGATGTaGTCTTTGACCAAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LCLTPKVQIFCYQMFHFLMFGKM*SLTKGL Trigger: AAGGCCTTTGGTCAAAGAGCACATCTTACCAAACAT...TAGAAAGTGGAACATCTGGTAGCAAAAGATTTGAACTTTGGGAGTTAGACAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR TCA 90 bp | CAGATGTTCCACTTTCTATCTCTTGCTAATTTCCTTCTATTTCAGCTAATAGGCAGGAACTTCTTGTTCTaGGAACTGAAATCTATGTCT | + |
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Preference number: 4 (lower is better) Translates to: QMFHFLSLANFLLFQLIGRNFLF*ELKSMS Trigger: AGACATAGATTTCAGTTCTCAGAACAAGAAGTTCCT...GCCTATTAGCTGAAATAGAAGGAAATTAGCAAGAGATAGAAAGTGGAACATCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | CAATTAAGCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCTTGTCTTTGTGGACTTaGTTACCAGGGGGAGTTAGC | + |
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Preference number: 5 (lower is better) Translates to: QLSLHSRCRLSHIPGTQGLSLWT*LPGGVS Trigger: GCTAACTCCCCCTGGTAACAAAGTCCACAAAGACAA...GCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGCTTAATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | CAATTAAGCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCCATTCATATGCTTTCTaGCCAGCATCAGCTGCATGG | + |
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Preference number: 5 (lower is better) Translates to: QLSLHSRCRLSHIPGTQGHSYAF*PASAAW Trigger: CCATGCAGCTGATGCTGGCAAGAAAGCATATGAATG...GCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGCTTAATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | ATGAGCCTGCGAAGGCACCCCTCCCACCTCATCATACCATGCTCCTTCAAATATGTCCTTGAGAGTAGATaGGAGGATCTCTGCGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: MSLRRHPSHLIIPCSFKYVLESR*EDLCVA Trigger: AGCAACGCAGAGATCCTCCAATCTACTCTCAAGGAC...ATATTTGAAGGAGCATGGTATGATGAGGTGGGAGGGGTGCCTTCGCAGGCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR CAA 90 bp | GTACCCATCGCCAATCAATGGATGATACCTCGCAGGGAAGGGATGCCTCAGCATCCAGTCTTAGGAGAGTaGACTATTTCCTTGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: VPIANQWMIPRREGMPQHPVLGE*TISLLS Trigger: GGACAGCAAGGAAATAGTCAACTCTCCTAAGACTGG...ATGCTGAGGCATCCCTTCCCTGCGAGGTATCATCCATTGATTGGCGATGGGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR CAA 90 bp | GTTGTTAGTTGCCTATCCTCGGTTTCACGCTTCTGTCTCCTCCAGAGTTCAGGGCTGGATAAGGTCCCCTaGTCTCATCCCTCAAAATCA | + |
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Preference number: 5 (lower is better) Translates to: VVSCLSSVSRFCLLQSSGLDKVP*SHPSKS Trigger: TGATTTTGAGGGATGAGACAAGGGGACCTTATCCAG...CCCTGAACTCTGGAGGAGACAGAAGCGTGAAACCGAGGATAGGCAACTAACAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | CAATTAAGCCTGCACTCCAGATGTAGACTTTCCCACATCCCTGGGACTCAGGGCGGTAAGATGTGCTCTTaGACCAAAGGCCTTTTCACA | + |
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Preference number: 5 (lower is better) Translates to: QLSLHSRCRLSHIPGTQGGKMCS*TKGLFT Trigger: TGTGAAAAGGCCTTTGGTCAAAGAGCACATCTTACC...GCCCTGAGTCCCAGGGATGTGGGAAAGTCTACATCTGGAGTGCAGGCTTAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | AAACTGTTGTTAGTTGCCTATCCTCGGTTTCACGCTTCTGTCTCCTCCAGAGTTGTGTCCCCACACTCCTaGTCTTTGTGGACTTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: KLLLVAYPRFHASVSSRVVSPHS*SLWTLL Trigger: TAACAAAGTCCACAAAGACAAGGAGTGTGGGGACAC...AACTCTGGAGGAGACAGAAGCGTGAAACCGAGGATAGGCAACTAACAACAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | ATCCACAGTAACTTTCATTTCCTAATCATCCTTATTGCTCTTTACTCCCAAGTTTGGAGGATCTCTGCGTaGCTTCGCTGGAGCTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: IHSNFHFLIILIALYSQVWRISA*LRWSCP Trigger: GGGACAGCTCCAGCGAAGCAACGCAGAGATCCTCCA...AACTTGGGAGTAAAGAGCAATAAGGATGATTAGGAAATGAAAGTTACTGTGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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| CDS-3UTR CAA 90 bp | CTCTGTCTAACTCCCAAAGTTCAAATCTTTTGCTACCAGATGTTCCACTTTCTAGATGACTGGTCAGGCTaGAGTCACAGTGAAAAGCTT | + |
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Preference number: 5 (lower is better) Translates to: LCLTPKVQIFCYQMFHFLDDWSG*SHSEKL Trigger: AAGCTTTTCACTGTGACTCAAGCCTGACCAGTCATC...TAGAAAGTGGAACATCTGGTAGCAAAAGATTTGAACTTTGGGAGTTAGACAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS-3UTR CAA 90 bp | TTCCTTGGACTATTTTCTTTCCTCAGTATGAATGCTCTGGTGACAATTAAGCCTATAGGCGACTGCCAGTaGCTTAAAATATTCCTGATT | + |
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Preference number: 5 (lower is better) Translates to: FLGLFSFLSMNALVTIKPIGDCQ*LKIFLI Trigger: AATCAGGAATATTTTAAGCAACTGGCAGTCGCCTAT...AGGCTTAATTGTCACCAGAGCATTCATACTGAGGAAAGAAAATAGTCCAAGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS TCA 72 bp | CTCACCAGTGTGACCTTGCGGAAGGCCCAGTATTCCTaGAGGCAAACCAAACGGCCCTCCAGATTCCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LTSVTLRKAQYS*RQTKRPSRFLP Trigger: GGGAAGGAATCTGGAGGGCCGTTTGGTTTGCCTTCAGGAATACTGGGCCTTCCGCAAGGTCACACTGGTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085792.5 |
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| CDS CAA 72 bp | AAGTCCAGTACAAGCATCTGTGTCCTTGAGAGTAGATaGGAGGATCTCTGCGTTGCTTCGCTGGAGCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: KSSTSICVLESR*EDLCVASLELS Trigger: GGACAGCTCCAGCGAAGCAACGCAGAGATCCTCCAATCTACTCTCAAGGACACAGATGCTTGTACTGGACTT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108223.8 |
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