Pregenerated sensors for ZFP936 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064194Ensembl transcript IDs: ENSMUST00000200973.4, ENSMUST00000202535.4
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATGGTGGTATCATGGTCTaGAAGTTCTGGAGCTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: SPNSIPTNVITQHSHTRYGGIMV*KFWSCR Trigger: CCTGCAGCTCCAGAACTTCCAGACCATGATACCACC...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATATGGTCTGGAAGTTCTaGAGCTGCAGGGAAGACTTT | + |
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Preference number: 2 (lower is better) Translates to: SPNSIPTNVITQHSHTRYMVWKF*SCREDF Trigger: AAAGTCTTCCCTGCAGCTCCAGAACTTCCAGACCAT...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR TCA 90 bp | TCTCCAGTATGCATCCTTGTATGCACTTTGAGATTGCCTTGTGCAAAGGCTTTAAAGATGACTCCAGTGTaGATAGGCTTCATCACATTG | + |
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Preference number: 2 (lower is better) Translates to: SPVCILVCTLRLPCAKALKMTPV*IGFITL Trigger: CAATGTGATGAAGCCTATTCACACTGGAGTCATCTT...TAAAGCCTTTGCACAAGGCAATCTCAAAGTGCATACAAGGATGCATACTGGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR TCA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACAGGTGACTCCAAAAGTTaGTTGTCTACCTTGATGACT | + |
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Preference number: 2 (lower is better) Translates to: QTSPNSIPTNVITQHSHTGDSKS*LSTLMT Trigger: AGTCATCAAGGTAGACAATCAACTTTTGGAGTCACC...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR GCA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACATTATGGGTTTTAAGATaGCTGCTTTCTGTAAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: QTSPNSIPTNVITQHSHTLWVLR*LLSVRA Trigger: GGCCCTTACAGAAAGCAGGCATCTTAAAACCCATAA...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR TCA 90 bp | ATGCAAGCACTTTACTATGTTGAAAGACTTCAGAGTTTTTGTCTCCAGTTTGGTTCTCTCCAGCAGGAGTaGTTTTGTGCTGTTAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: MQALYYVERLQSFCLQFGSLQQE*FCAVKS Trigger: GCTCTTAACAGCACAAAATCACTCCTGCTGGAGAGA...ACCAAACTGGAGACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTTGCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| 3UTR-3UTR GCA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACAGTATGCATCCTTGTATaGACTTTGAGATTGCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: QTSPNSIPTNVITQHSHTVCILV*TLRLPC Trigger: ACAAGGCAATCTCAAAGTGCATACAAGGATGCATAC...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR GCA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACATTGAAGCAAAACCCATaGTCCTCATGCAAATCCTTT | + |
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Preference number: 2 (lower is better) Translates to: QTSPNSIPTNVITQHSHTLKQNP*SSCKSF Trigger: AAAGGATTTGCATGAGGAGCATGGGTTTTGCTTCAA...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATAAGATAACTGGGCTGTaGAAAGGTTTTATCACATTC | + |
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Preference number: 2 (lower is better) Translates to: SPNSIPTNVITQHSHTRYKITGL*KGFITF Trigger: GAATGTGATAAAACCTTTCCACAGCCCAGTTATCTT...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR GCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATATTGCCTTGTGGAAATaGTTTATCACACTGATTACA | + |
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Preference number: 2 (lower is better) Translates to: SPNSIPTNVITQHSHTRYIALWK*FITLIT Trigger: TGTAATCAGTGTGATAAAGCATTTCCACAAGGCAAT...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CCA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACAACATGGACTAAAACATaGAGAATAGAAACTATGGCA | + |
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Preference number: 2 (lower is better) Translates to: QTSPNSIPTNVITQHSHTTWTKT*RIETMA Trigger: TGCCATAGTTTCTATTCTCCATGTTTTAGTCCATGT...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR TCA 90 bp | CAAGCACTTTACTATGTTGAAAGACTTCAGAGTTTTTGTCTCCAGTTTGGTTTCGATGACTGTGATATTTaGAGGCTTTATCCCATTGTG | + |
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Preference number: 2 (lower is better) Translates to: QALYYVERLQSFCLQFGFDDCDI*RLYPIV Trigger: CACAATGGGATAAAGCCTTCAAATATCACAGTCATC...GAAACCAAACTGGAGACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| 3UTR-3UTR GCA 90 bp | CTCTCCAGTATCTGTTCTTTTATGCATCCCAAAAGATTAGTCATATACAAAGGCGGGATATCTCCAATATaGCTCCTTGTATGTACTTTG | + |
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Preference number: 2 (lower is better) Translates to: LSSICSFMHPKRLVIYKGGISPI*LLVCTL Trigger: CAAAGTACATACAAGGAGGCATATTGGAGATATCCC...GCCTTTGTATATGACTAATCTTTTGGGATGCATAAAAGAACAGATACTGGAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CCA 90 bp | CTCTCCAGTATCTGTTCTTTTATGCATCCCAAAAGATTAGTCATATACAAAGGCAATATACCTGGGCTGTaGAAAGGCTTTATCACATTT | + |
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Preference number: 2 (lower is better) Translates to: LSSICSFMHPKRLVIYKGNIPGL*KGFITF Trigger: AAATGTGATAAAGCCTTTCCACAGCCCAGGTATATT...GCCTTTGTATATGACTAATCTTTTGGGATGCATAAAAGAACAGATACTGGAGAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR CAA 90 bp | AAGCACTTTACTATGTTGAAAGACTTCAGAGTTTTTGTCTCCAGTTaGGTTTCTTTCAAGCTTTTGAAGATGACTGTGATATTTGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: KHFTMLKDFRVFVSS*VSFKLLKMTVIFEG Trigger: GCCTTCAAATATCACAGTCATCTTCAAAAGCTTGAAAGAAACCAAACTGGAGACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| 3UTR CCA 72 bp | AAACTATGGCATGGTTATACCTCAGCTAACACGTGGTaGTATCATGGTCTGGAAGTTCTGGAGCTGCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: KLWHGYTSANTW*YHGLEVLELQG Trigger: TCCCTGCAGCTCCAGAACTTCCAGACCATGATACCACCACGTGTTAGCTGAGGTATAACCATGCCATAGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CAA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACAGGCTCTTTCAGGTCCTaGTTCATAATGGTGACTCCA | + |
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Preference number: 3 (lower is better) Translates to: QTSPNSIPTNVITQHSHTGSFRS*FIMVTP Trigger: TGGAGTCACCATTATGAACAAGGACCTGAAAGAGCC...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR TCA 72 bp | GATTTCCTAGTAGAGGGAATGGCATTAAAAGATGTTTaGCCAACCAAATACACAGTCACGCCCAATGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: DFLVEGMALKDV*PTKYTVTPNGL Trigger: AAGGCCATTGGGCGTGACTGTGTATTTGGTTGGTCAAACATCTTTTAATGCCATTCCCTCTACTAGGAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR CCA 72 bp | CACGGTATTAATACAGGCTGGGAAATTTTAAAACCCTaGCTCTTTCAGGTCCTTGTTCATAATGGTGACTCC | + |
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Preference number: 3 (lower is better) Translates to: HGINTGWEILKP*LFQVLVHNGDS Trigger: GGAGTCACCATTATGAACAAGGACCTGAAAGAGCCAGGGTTTTAAAATTTCCCAGCCTGTATTAATACCGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CAA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATGTGTTCTTTCATGTTTaGGAAGATGACTCCAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SPNSIPTNVITQHSHTRYVFFHV*EDDSSV Trigger: CACACTGGAGTCATCTTCCAAAACATGAAAGAACAC...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CAA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATGTGTTCTTTCATGTATaGGAAAATGACTCCGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SPNSIPTNVITQHSHTRYVFFHV*ENDSGV Trigger: CACACCGGAGTCATTTTCCAATACATGAAAGAACAC...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR CCA 72 bp | TCACCCAACATTCACATACACGGTATTAATACAGGCTaGGAAATTTTAAAACCCTGGCTCTTTCAGGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: SPNIHIHGINTG*EILKPWLFQVL Trigger: AAGGACCTGAAAGAGCCAGGGTTTTAAAATTTCCCAGCCTGTATTAATACCGTGTATGTGAATGTTGGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CAA 90 bp | CAAGCACTTTACTATGTTGAAAGACTTCAGAGTTTTTGTCTCCAGTTTGGTTTCGTGCTGTTAAGAGCATaGACTTCTCTTCCAGAGGTC | + |
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Preference number: 3 (lower is better) Translates to: QALYYVERLQSFCLQFGFVLLRA*TSLPEV Trigger: GACCTCTGGAAGAGAAGTCAATGCTCTTAACAGCAC...GAAACCAAACTGGAGACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| 3UTR-3UTR CAA 90 bp | CTCTCCAGTATCTGTTCTTTTATGCATCCCAAAAGATTAGTCATATACAAAGGCATCCTTGTATGCACTTaGAGATTGCCTTGTGCAAAG | + |
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Preference number: 3 (lower is better) Translates to: LSSICSFMHPKRLVIYKGILVCT*RLPCAK Trigger: CTTTGCACAAGGCAATCTCAAAGTGCATACAAGGAT...GCCTTTGTATATGACTAATCTTTTGGGATGCATAAAAGAACAGATACTGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR-3UTR CAA 90 bp | CTCTCCAGTATCTGTTCTTTTATGCATCCCAAAAGATTAGTCATATACAAAGGCTGTTCTTTCATGTATTaGAATATACCTGGGCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: LSSICSFMHPKRLVIYKGCSFMY*NIPGLW Trigger: CCACAGCCCAGGTATATTCAAATACATGAAAGAACA...GCCTTTGTATATGACTAATCTTTTGGGATGCATAAAAGAACAGATACTGGAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| 3UTR CAA 72 bp | TACACAGTCACGCCCAATGGCCTTCTCAATTCTGAGTaGACTTCACTGGGCAAATGCACTGGGACATATTTA | + |
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Preference number: 4 (lower is better) Translates to: YTVTPNGLLNSE*TSLGKCTGTYL Trigger: TAAATATGTCCCAGTGCATTTGCCCAGTGAAGTCAACTCAGAATTGAGAAGGCCATTGGGCGTGACTGTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR TCA 90 bp | CAAACCTCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACATCTCTCCAGCAGGAGTaGTTTTGTGCCTTCCATATC | + |
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Preference number: 4 (lower is better) Translates to: QTSPNSIPTNVITQHSHTSLQQE*FCAFHI Trigger: GATATGGAAGGCACAAAATCACTCCTGCTGGAGAGA...TGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGAGGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR TCA 90 bp | GTGTTCTTTCATGTACCCGAAGATCGCTGGGTCGTAAAAAGGCTTTACCACATTGATGACTGTGATATTTaGAGGCTTTATCCCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: VFFHVPEDRWVVKRLYHIDDCDI*RLYPIV Trigger: CACAATGGGATAAAGCCTTCAAATATCACAGTCATC...AATGTGGTAAAGCCTTTTTACGACCCAGCGATCTTCGGGTACATGAAAGAACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR TCA 90 bp | GTGTTCTTTCATGTACCCGAAGATCGCTGGGTCGTAAAAAGGCTTTACCACATTTTATGGGTTTTAAGATaGCTGCGTTGTGTAAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: VFFHVPEDRWVVKRLYHILWVLR*LRCVKA Trigger: GGCTTTTACACAACGCAGTCATCTTAAAACCCATAA...AATGTGGTAAAGCCTTTTTACGACCCAGCGATCTTCGGGTACATGAAAGAACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR GCA 90 bp | TCTCCAGTATGCATCCTTGTATGCACTTTGAGATTGCCTTGTGCAAAGGCTTTAGCAGGAGTGATTTTGTaGCTTCCATATCTTCTATCA | + |
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Preference number: 4 (lower is better) Translates to: SPVCILVCTLRLPCAKALAGVIL*LPYLLS Trigger: TGATAGAAGATATGGAAGGCACAAAATCACTCCTGC...TAAAGCCTTTGCACAAGGCAATCTCAAAGTGCATACAAGGATGCATACTGGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR GCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATAAGATACTTGAGGTGTaGAAAGGCTTTATCACACTG | + |
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Preference number: 4 (lower is better) Translates to: SPNSIPTNVITQHSHTRYKILEV*KGFITL Trigger: CAGTGTGATAAAGCCTTTGCACACCTCAAGTATCTT...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR GCA 90 bp | GTGTTCTTTCATGTACCCGAAGATCGCTGGGTCGTAAAAAGGCTTTACCACATTATGTATTCTTTCATGTaGTCGAAGATACTTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: VFFHVPEDRWVVKRLYHIMYSFM*SKILEV Trigger: CACCTCAAGTATCTTCGAGCACATGAAAGAATACAT...AATGTGGTAAAGCCTTTTTACGACCCAGCGATCTTCGGGTACATGAAAGAACAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR CCA 90 bp | GAGTACTTTGACATGCAAGCACTTTACTATGTTGAAAGACTTCAGAGTTTTTGTATCCCAGCTTCCATATaGTGGCTCTCAACCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: EYFDMQALYYVERLQSFCIPASI*WLSTIS Trigger: AGAGATGGTTGAGAGCCACCATATGGAAGCTGGGAT...ACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTTGCATGTCAAAGTACTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| CDS-3UTR TCA 90 bp | CTCTCCAGTATCTGTTCTTTTATGCATCCCAAAAGATTAGTCATATACAAAGGCGAGATTACTCTGGTGTaGAAAGGCTTTATCACACTG | + |
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Preference number: 4 (lower is better) Translates to: LSSICSFMHPKRLVIYKGEITLV*KGFITL Trigger: CAGTGTGATAAAGCCTTTTCACACCAGAGTAATCTC...GCCTTTGTATATGACTAATCTTTTGGGATGCATAAAAGAACAGATACTGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR CCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATATTTGGAGATTACTCTaGTGTGAAAAGGCTTTATCA | + |
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Preference number: 4 (lower is better) Translates to: SPNSIPTNVITQHSHTRYIWRLL*CEKALS Trigger: TGATAAAGCCTTTTCACACCAGAGTAATCTCCAAAT...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR CCA 90 bp | TCCCCAAATAGTATACCCACCAATGTGATCACCCAACATTCACATACACGGTATGTTCTTTCATGTATTTaGAGATTACTCTGGTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SPNSIPTNVITQHSHTRYVLSCI*RLLWCE Trigger: TTCACACCAGAGTAATCTCCAAATACATGAAAGAAC...ATACCGTGTATGTGAATGTTGGGTGATCACATTGGTGGGTATACTATTTGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR GCA 90 bp | ATGCAAGCACTTTACTATGTTGAAAGACTTCAGAGTTTTTGTCTCCAGTTTGGTTCTAATGGAATTCCATaGTCTCTTCTGGTGTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: MQALYYVERLQSFCLQFGSNGIP*SLLVCL Trigger: AAGACACACCAGAAGAGAGCATGGAATTCCATTAGA...ACCAAACTGGAGACAAAAACTCTGAAGTCTTTCAACATAGTAAAGTGCTTGCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| CDS-3UTR CCA 90 bp | TTTGTAGAGTACTTTGACATGCAAGCACTTTACTATGTTGAAAGACTTCAGAGTTTCCATGCTCTCTTCTaGTGTGTCTTCCATATCTTC | + |
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Preference number: 4 (lower is better) Translates to: FVEYFDMQALYYVERLQSFHALF*CVFHIF Trigger: GAAGATATGGAAGACACACCAGAAGAGAGCATGGAA...ACTCTGAAGTCTTTCAACATAGTAAAGTGCTTGCATGTCAAAGTACTCTACAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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| 3UTR CAA 72 bp | ATAGGGATATCTCCAATATGCCTCCTTGTATGTACTTaGAGATTATTGCCTTGTGGAAATGCTTTATCACAC | + |
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Preference number: 4 (lower is better) Translates to: IGISPICLLVCT*RLLPCGNALSH Trigger: GTGTGATAAAGCATTTCCACAAGGCAATAATCTCAAAGTACATACAAGGAGGCATATTGGAGATATCCCTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS-3UTR CCA 90 bp | CTCTCCAGTATCTGTTCTTTTATGCATCCCAAAAGATTAGTCATATACAAAGGCATTCGGAGATTACTCTaGTGTGAAAAGGCTTTATTA | + |
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Preference number: 4 (lower is better) Translates to: LSSICSFMHPKRLVIYKGIRRLL*CEKALL Trigger: TAATAAAGCCTTTTCACACCAGAGTAATCTCCGAAT...GCCTTTGTATATGACTAATCTTTTGGGATGCATAAAAGAACAGATACTGGAGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000202535.4 |
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| CDS GCA 72 bp | ATATGGTGGCTCTCAACCATCTCTAATGGAATTCCATaGTCTCTTCTGGTGTGTCTTCCATATCTTCTATCA | + |
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Preference number: 6 (lower is better) Translates to: IWWLSTISNGIP*SLLVCLPYLLS Trigger: TGATAGAAGATATGGAAGACACACCAGAAGAGAGCATGGAATTCCATTAGAGATGGTTGAGAGCCACCATAT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200973.4 |
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