Pregenerated sensors for ZFP933 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059423Ensembl transcript IDs: ENSMUST00000105718.8, ENSMUST00000135798.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAAACAAACCAACCTGTTCCCACCCATAATAAGGAGAAGCCTGCCTaGTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: QTNQPVPTHNKEKPA*SLYSLYGFFFPPLC Trigger: GCAGAGAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCTTATTATGGGTGGGAACAGGTTGGTTTGTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CCA 90 bp | ACATTGATTAGACCTTCACAGGCAAGCTCAGCACCAACAGAGGGATaGATTAGAAATATGGGTGATGCTGGATCTCAAGTTTATGATGCC | + |
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Preference number: 1 (lower is better) Translates to: TLIRPSQASSAPTEG*IRNMGDAGSQVYDA Trigger: GGCATCATAAACTTGAGATCCAGCATCACCCATATTTCTAATCCATCCCTCTGTTGGTGCTGAGCTTGCCTGTGAAGGTCTAATCAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR TCA 90 bp | ACTAGCCCGCATGTGCTCAAGGTCAGAGTCACTTCTGTAGATAAGTaGACAAATTCAGGAGAGATCAGAAAACAGGTATTTTCGCCAACT | + |
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Preference number: 1 (lower is better) Translates to: TSPHVLKVRVTSVDK*TNSGEIRKQVFSPT Trigger: AGTTGGCGAAAATACCTGTTTTCTGATCTCTCCTGAATTTGTTCACTTATCTACAGAAGTGACTCTGACCTTGAGCACATGCGGGCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CCA 90 bp | CACCCTATGGGGCCCAGAATCAAATTCAGTTCAATCATATCCTGTTaGTCTCAAAGAAACTCACCCATAACAATTAAACAAGTTAATGCA | + |
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Preference number: 1 (lower is better) Translates to: HPMGPRIKFSSIISC*SQRNSPITIKQVNA Trigger: TGCATTAACTTGTTTAATTGTTATGGGTGAGTTTCTTTGAGACCAACAGGATATGATTGAACTGAATTTGATTCTGGGCCCCATAGGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR GCA 90 bp | GCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCTCTaGACTTTGTGTATTACTCTCATAATTTCAAAGTTCCCTTTTAAT | + |
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Preference number: 1 (lower is better) Translates to: ACSLYSLYGFFFPPL*TLCITLIISKFPFN Trigger: ATTAAAAGGGAACTTTGAAATTATGAGAGTAATACACAAAGTGCAGAGAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGAAAATCCCCCTGCCTCTaGCTCCCGAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: KVIGKVKLCLQKHPMGPRKSPCL*LPSAGI Trigger: AATCCCAGCACTCGGGAGGCAGAGGCAGGGGGATTT...TCTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR GCA 90 bp | TTGGGGGACAGGTACTGGAGAGATGGCTCAGTGGTTAAGAGCAATAGACGCTCTCAGGAACCATCCAAATaGCAGCTGTTCTCAGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: LGDRYWRDGSVVKSNRRSQEPSK*QLFSVW Trigger: CCACACTGAGAACAGCTGGCATTTGGATGGTTCCTG...AGAGCGTCTATTGCTCTTAACCACTGAGCCATCTCTCCAGTACCTGTCCCCCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGGCTTCATCCCAGAGATaGAGAAATGGTTCAACGTGC | + |
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Preference number: 2 (lower is better) Translates to: KSDRQGKALPSETPYGAQASSQR*RNGSTC Trigger: GCACGTTGAACCATTTCTGCATCTCTGGGATGAAGC...CTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR GCA 90 bp | AGGAGAAGCCTGCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCACACTAGCCCGCATGTaGTCAAGGTCAGAGTCACTT | + |
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Preference number: 2 (lower is better) Translates to: RRSLPALSTLYMDSFSLLTLARM*SRSESL Trigger: AAGTGACTCTGACCTTGAGCACATGCGGGCTAGTGT...GAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAGAAGCCTGCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCCTGCAACTGAAGGTTTaGTACACACAGGAGCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: RRSLPALSTLYMDSFSLLLQLKV*YTQEQR Trigger: CCTCTGCTCCTGTGTGTACCAAACCTTCAGTTGCAG...GAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGGGGACAGGTACTGGAGAGATGGCTCAGTGGTTAAGAGCAATAGACGCTCTACTTCTGTAGATAAGTaGACAAATTCAGGAGAGATC | + |
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Preference number: 2 (lower is better) Translates to: LGDRYWRDGSVVKSNRRSTSVDK*TNSGEI Trigger: GATCTCTCCTGAATTTGTTCACTTATCTACAGAAGT...AGAGCGTCTATTGCTCTTAACCACTGAGCCATCTCTCCAGTACCTGTCCCCCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGAGAAATGGTTCAACGTaGAAAAATGAGTGGGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: KSDRQGKALPSETPYGAQRNGST*KNEWEK Trigger: TTTTTCCCACTCATTTTTGCACGTTGAACCATTTCT...CTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CAA 90 bp | CACAGGCAGCCTGATTTTCATAATCACATCATGGCACTATGTTATTaGGCAGCTTTAAATGCTTGTGATGCGGTTCAAGGTTCAGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: HRQPDFHNHIMALCY*AALNACDAVQGSGK Trigger: CTTTCCTGAACCTTGAACCGCATCACAAGCATTTAAAGCTGCCAAATAACATAGTGCCATGATGTGATTATGAAAATCAGGCTGCCTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CAA 90 bp | AAACAAAAGCTGGAAATACAAATAGATGGCACTGCAACTGAAGGTTaGGTACACACAGGAGCAGAGGTAACTAACTTCACCAAAATCTTG | + |
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Preference number: 2 (lower is better) Translates to: KQKLEIQIDGTATEG*VHTGAEVTNFTKIL Trigger: CAAGATTTTGGTGAAGTTAGTTACCTCTGCTCCTGTGTGTACCAAACCTTCAGTTGCAGTGCCATCTATTTGTATTTCCAGCTTTTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR TCA 90 bp | TACGAAAAAGGTGTGGCAAAGGTCAGCACTGAACTAATGAATGCAGATCAAAAAACCCAATTCATTATATaGAGCCACAGTTACTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: YEKGVAKVSTELMNADQKTQFII*SHSYSD Trigger: ATCAGAGTAACTGTGGCTTCATATAATGAATTGGGT...TTTTTGATCTGCATTCATTAGTTCAGTGCTGACCTTTGCCACACCTTTTTCGTA 38% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CCA 72 bp | GGGGCTTGGGGGACAGGTACTGGAGAGATGGCTCAGTaGTTAAGAGCAATAGACGCTCTTCCAGAGGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: GAWGTGTGEMAQ*LRAIDALPEVL Trigger: CAGGACCTCTGGAAGAGCGTCTATTGCTCTTAACCACTGAGCCATCTCTCCAGTACCTGTCCCCCAAGCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CCA 72 bp | GTTCAGGAACCATCCAAATGCCAGCTGTTCTCAGTGTaGTACCCTGGACGCCTGACAAGGGATTGTAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: VQEPSKCQLFSV*YPGRLTRDCRP Trigger: TGGCCTACAATCCCTTGTCAGGCGTCCAGGGTACCACACTGAGAACAGCTGGCATTTGGATGGTTCCTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR TCA 72 bp | ATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTaGTGGGATCTGATGCCCTCTTCTGGTGTGCACTCA | + |
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Preference number: 3 (lower is better) Translates to: IPSNHMVAHNHL*WDLMPSSGVHS Trigger: TGAGTGCACACCAGAAGAGGGCATCAGATCCCATCACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGAAACTTCACCAAAATCTaGGCGTCTAGATTTGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: KVIGKVKLCLQKHPMGPRNFTKI*ASRFAP Trigger: AGGGGCAAATCTAGACGCCAAGATTTTGGTGAAGTT...TCTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CCA 72 bp | AGACCTTCACAGGCAAGCTCAGCACCAACAGAGGGATaGATTAGAAATATGGGTGATGCTGGATCTCAAGTT | + |
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Preference number: 3 (lower is better) Translates to: RPSQASSAPTEG*IRNMGDAGSQV Trigger: AACTTGAGATCCAGCATCACCCATATTTCTAATCCATCCCTCTGTTGGTGCTGAGCTTGCCTGTGAAGGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR GCA 72 bp | CAACCTGTTCCCACCCATAATAAGGAGAAGCCTGCCTaGTCTCTCTACTCTCTATATGGATTCTTTTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: QPVPTHNKEKPA*SLYSLYGFFFP Trigger: AGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCTTATTATGGGTGGGAACAGGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGAGTGACATCACAATGCTaGAAGATATTGTTGACACAT | + |
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Preference number: 3 (lower is better) Translates to: KVIGKVKLCLQKHPMGPRVTSQC*KILLTH Trigger: ATGTGTCAACAATATCTTCAAGCATTGTGATGTCAC...TCTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR CAA 90 bp | AACACCCTATGGGGCCCAGAATCAAATTCAGTTCAATCATATCCTGTTGGTCTCCATATGATGTTCAACTaGGCTTCATCCCAGAGATGC | + |
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Preference number: 3 (lower is better) Translates to: NTLWGPESNSVQSYPVGLHMMFN*ASSQRC Trigger: GCATCTCTGGGATGAAGCCAAGTTGAACATCATATG...GAGACCAACAGGATATGATTGAACTGAATTTGATTCTGGGCCCCATAGGGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR GCA 72 bp | AATGCAGATCAAAAAGTGATAGGCAAGGTAAAGCTCTaGCTTCAGAAACACCCTATGGGGCCCAGAATCAAA | + |
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Preference number: 3 (lower is better) Translates to: NADQKVIGKVKL*LQKHPMGPRIK Trigger: TTTGATTCTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTTTTGATCTGCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAGAAGCCTGCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCATGGCACTATGTTATTaGGCAGCTTTAAATGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: RRSLPALSTLYMDSFSLLMALCY*AALNAC Trigger: ACAAGCATTTAAAGCTGCCAAATAACATAGTGCCAT...GAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR-3UTR CAA 90 bp | TACGAAAAAGGTGTGGCAAAGGTCAGCACTGAACTAATGAATGCAGATCAAAAATCTTGGCGTCTAGATTaGCCCCTTCAGGAGGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: YEKGVAKVSTELMNADQKSWRLD*PLQEEN Trigger: ATTTTCCTCCTGAAGGGGCAAATCTAGACGCCAAGA...TTTTTGATCTGCATTCATTAGTTCAGTGCTGACCTTTGCCACACCTTTTTCGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR GCA 72 bp | TCACATATGATGTTCAACTTGGCTTCATCCCAGAGATaGAGAAATGGTTCAACGTGCAAAAATGAGTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: SHMMFNLASSQR*RNGSTCKNEWE Trigger: TTCCCACTCATTTTTGCACGTTGAACCATTTCTGCATCTCTGGGATGAAGCCAAGTTGAACATCATATGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR TCA 72 bp | CATGTGCTCAAGGTCAGAGTCACTTCTGTAGATAAGTaGACAAATTCAGGAGAGATCAGAAAACAGGTATTT | + |
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Preference number: 3 (lower is better) Translates to: HVLKVRVTSVDK*TNSGEIRKQVF Trigger: AAATACCTGTTTTCTGATCTCTCCTGAATTTGTTCACTTATCTACAGAAGTGACTCTGACCTTGAGCACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR TCA 72 bp | AAAATAGAAAAAGGGAACATTACCCAATTCATTATATaGAGCCACAGTTACTCTGATACCCAAAGCACACAA | + |
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Preference number: 3 (lower is better) Translates to: KIEKGNITQFII*SHSYSDTQSTQ Trigger: TTGTGTGCTTTGGGTATCAGAGTAACTGTGGCTTCATATAATGAATTGGGTAATGTTCCCTTTTTCTATTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR GCA 90 bp | TTGGGGGACAGGTACTGGAGAGATGGCTCAGTGGTTAAGAGCAATAGACGCTCTGTGGGACTTCTTTCATaGCTTCCACGTCTTCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LGDRYWRDGSVVKSNRRSVGLLS*LPRLLE Trigger: CTCTAGAAGACGTGGAAGGCATGAAAGAAGTCCCAC...AGAGCGTCTATTGCTCTTAACCACTGAGCCATCTCTCCAGTACCTGTCCCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR TCA 90 bp | AGGAGAAGCCTGCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCCCCATTCTTCCTGAGTaGAGTTCACATGCACATCAT | + |
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Preference number: 4 (lower is better) Translates to: RRSLPALSTLYMDSFSLLPILPE*SSHAHH Trigger: ATGATGTGCATGTGAACTTCACTCAGGAAGAATGGG...GAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR GCA 90 bp | AGGAGAAGCCTGCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCAGGATAATGGTGATATaGAAAGGCTTTACCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: RRSLPALSTLYMDSFSLLRIMVI*KGFTTF Trigger: AAAAGTGGTAAAGCCTTTGCATATCACCATTATCCT...GAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR TCA 90 bp | GCTTTAAATGCTTGTGATGCGGTTCAAGGTTCAGGAAAGGGGTTTGAGTCGTTTGAGATGACCATTTTGTaGAAAGGCTTTATCACATTG | + |
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Preference number: 4 (lower is better) Translates to: ALNACDAVQGSGKGFESFEMTIL*KGFITL Trigger: CAATGTGATAAAGCCTTTTCACAAAATGGTCATCTC...AAACGACTCAAACCCCTTTCCTGAACCTTGAACCGCATCACAAGCATTTAAAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR TCA 90 bp | TACGAAAAAGGTGTGGCAAAGGTCAGCACTGAACTAATGAATGCAGATCAAAAACGTCTTCTAGAGCTTTaGCAATGTTCTTCAGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: YEKGVAKVSTELMNADQKRLLEL*QCSSVG Trigger: TCCTACTGAAGAACATTGTCAAAGCTCTAGAAGACG...TTTTTGATCTGCATTCATTAGTTCAGTGCTGACCTTTGCCACACCTTTTTCGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR GCA 90 bp | TACGAAAAAGGTGTGGCAAAGGTCAGCACTGAACTAATGAATGCAGATCAAAAAGAGATTACTATGCTGTaGAAAGGCTTTATCACACTG | + |
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Preference number: 4 (lower is better) Translates to: YEKGVAKVSTELMNADQKEITML*KGFITL Trigger: CAGTGTGATAAAGCCTTTGCACAGCATAGTAATCTC...TTTTTGATCTGCATTCATTAGTTCAGTGCTGACCTTTGCCACACCTTTTTCGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR GCA 90 bp | TACGAAAAAGGTGTGGCAAAGGTCAGCACTGAACTAATGAATGCAGATCAAAAAAAGATGATAGTAACGTaGAAAGGCTTTTCCACACTG | + |
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Preference number: 4 (lower is better) Translates to: YEKGVAKVSTELMNADQKKMIVT*KGFSTL Trigger: CAGTGTGGAAAAGCCTTTGCACGTTACTATCATCTT...TTTTTGATCTGCATTCATTAGTTCAGTGCTGACCTTTGCCACACCTTTTTCGTA 39% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR GCA 90 bp | AGACCAAAAGTATCACATATGATGTTCAACTTGGCTTCATCCCAGAGATGCAGAAAGGTGACTATTATCTaGAAAGGCTTTACCACATTG | + |
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Preference number: 4 (lower is better) Translates to: RPKVSHMMFNLASSQRCRKVTII*KGFTTL Trigger: CAATGTGGTAAAGCCTTTGCAGATAATAGTCACCTT...TCTGCATCTCTGGGATGAAGCCAAGTTGAACATCATATGTGATACTTTTGGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CAA 72 bp | AAGAAAAGACCAAAAGTATCACATATGATGTTCAACTaGGCTTCATCCCAGAGATGCAGAAATGGTTCAACG | + |
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Preference number: 4 (lower is better) Translates to: KKRPKVSHMMFN*ASSQRCRNGST Trigger: CGTTGAACCATTTCTGCATCTCTGGGATGAAGCCAAGTTGAACATCATATGTGATACTTTTGGTCTTTTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CAA 72 bp | CCTGATTTTCATAATCACATCATGGCACTATGTTATTaGGCAGCTTTAAATGCTTGTGATGCGGTTCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: PDFHNHIMALCY*AALNACDAVQG Trigger: ACCTTGAACCGCATCACAAGCATTTAAAGCTGCCAAATAACATAGTGCCATGATGTGATTATGAAAATCAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| 3UTR CAA 72 bp | TCTCTATATGGATTCTTTTTCCCTCCTCTCTGCACTTaGTGTATTACTCTCATAATTTCAAAGTTCCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLYGFFFPPLCT*CITLIISKFPF Trigger: AAAAGGGAACTTTGAAATTATGAGAGTAATACACAAAGTGCAGAGAGGAGGGAAAAAGAATCCATATAGAGA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR CAA 90 bp | AAAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGTCTATGTATTCGAAGTaGACTTTGATCTGCAAACGC | + |
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Preference number: 5 (lower is better) Translates to: KSDRQGKALPSETPYGAQSMYSK*TLICKR Trigger: GCGTTTGCAGATCAAAGTCAACTTCGAATACATAGA...CTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR CAA 90 bp | AGGAGAAGCCTGCCTGCTCTCTCTACTCTCTATATGGATTCTTTTTCCCTCCTCTATTCGAAGTTGACTTaGATCTGTAAAGGCTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: RRSLPALSTLYMDSFSLLYSKLT*ICKGFP Trigger: GGGAAAGCCTTTACAGATCAAAGTCAACTTCGAATA...GAGGAGGGAAAAAGAATCCATATAGAGAGTAGAGAGAGCAGGCAGGCTTCTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR CAA 90 bp | AAAAGTGATAGGCAAGGTAAAGCTCTGCCTTCAGAAACACCCTATGGGGCCCAGAATTCGTTCATGACATaGAAGATGATAGTAACGTGC | + |
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Preference number: 5 (lower is better) Translates to: KSDRQGKALPSETPYGAQNSFMT*KMIVTC Trigger: GCACGTTACTATCATCTTCAATGTCATGAACGAATT...CTGGGCCCCATAGGGTGTTTCTGAAGGCAGAGCTTTACCTTGCCTATCACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS-3UTR CAA 90 bp | TACGAAAAAGGTGTGGCAAAGGTCAGCACTGAACTAATGAATGCAGATCAAAAACCAGTATGTGTCCTTTaGTGTATTTGGAGACTATGT | + |
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Preference number: 5 (lower is better) Translates to: YEKGVAKVSTELMNADQKPVCVL*CIWRLC Trigger: ACATAGTCTCCAAATACACAAAAGGACACATACTGG...TTTTTGATCTGCATTCATTAGTTCAGTGCTGACCTTTGCCACACCTTTTTCGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105718.8 |
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| CDS TCA 72 bp | GGACTTCTTTCATGCCTTCCACGTCTTCTAGAGCTTTaGCAATGTTCTTCAGTAGGATGGGCTTCCCAATTG | + |
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Preference number: 6 (lower is better) Translates to: GLLSCLPRLLEL*QCSSVGWASQL Trigger: CAATTGGGAAGCCCATCCTACTGAAGAACATTGTCAAAGCTCTAGAAGACGTGGAAGGCATGAAAGAAGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105718.8 ENSMUST00000135798.2 |
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| CDS CAA 72 bp | GGGACTTCTTTCATGCCTTCCACGTCTTCTAGAGCTTaGACAATGTTCTTCAGTAGGATGGGCTTCCCAATT | + |
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Preference number: 6 (lower is better) Translates to: GTSFMPSTSSRA*TMFFSRMGFPI Trigger: AATTGGGAAGCCCATCCTACTGAAGAACATTGTCAAAGCTCTAGAAGACGTGGAAGGCATGAAAGAAGTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105718.8 ENSMUST00000135798.2 |
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