Pregenerated sensors for ZFP931 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078861

Ensembl transcript IDs: ENSMUST00000108923.2, ENSMUST00000131702.8

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	TACTATTTTCAGCAGTCTGAGTTGGTAAATGTCCCCAGCAATGTTCAGAAACAATTATTTCTCTGTCTTTaGCCTAATGGAATGTCTTGC	+
Preference number: 2 (lower is better) Translates to: YYFQQSELVNVPSNVQKQLFLCL*PNGMSC Trigger: GCAAGACATTCCATTAGGTCAAAGACAGAGAAATAA...TTGTTTCTGAACATTGCTGGGGACATTTACCAACTCAGACTGCTGAAAATAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108923.2
3UTR-3UTR GCA 90 bp	GTATGTGTTCGCTTATGTATTTGGAGGTCACGCCTTCTTTTAAAAGCTTTACCAACTATGACTCTCATATaGAAAGGCTTTACCACATTG	+
Preference number: 2 (lower is better) Translates to: VCVRLCIWRSRLLLKALPTMTLI*KGFTTL Trigger: CAATGTGGTAAAGCCTTTGCATATGAGAGTCATAGT...TGGTAAAGCTTTTAAAAGAAGGCGTGACCTCCAAATACATAAGCGAACACATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131702.8
3UTR-3UTR GCA 90 bp	TACTATTTTCAGCAGTCTGAGTTGGTAAATGTCCCCAGCAATGTTCAGAAACAACCTAATGGAATGTCTTaGAAACAACAGTTACATATC	+
Preference number: 2 (lower is better) Translates to: YYFQQSELVNVPSNVQKQPNGMS*KQQLHI Trigger: GATATGTAACTGTTGTTTGCAAGACATTCCATTAGG...TTGTTTCTGAACATTGCTGGGGACATTTACCAACTCAGACTGCTGAAAATAGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108923.2
3UTR-3UTR CAA 90 bp	TTCGTTTATGGTTTTGGAGGTCATCACTTCTTGCAAAGGCTTTTCCACATTGGTTGTTCGTTTATGTTTTaGGAGGTCACCACTTCTTGC	+
Preference number: 3 (lower is better) Translates to: FVYGFGGHHFLQRLFHIGCSFMF*EVTTSC Trigger: GCAAGAAGTGGTGACCTCCAAAAACATAAACGAACA...ACCAATGTGGAAAAGCCTTTGCAAGAAGTGATGACCTCCAAAACCATAAACGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000131702.8
3UTR CAA 72 bp	TGCATTAATTCTCATTACTATTTTCAGCAGTCTGAGTaGGTAAATGTCCCCAGCAATGTTCAGAAACAAATT	+
Preference number: 4 (lower is better) Translates to: CINSHYYFQQSE*VNVPSNVQKQI Trigger: AATTTGTTTCTGAACATTGCTGGGGACATTTACCAACTCAGACTGCTGAAAATAGTAATGAGAATTAATGCA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108923.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu