RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP874A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069206

Ensembl transcript IDs: ENSMUST00000057241.15, ENSMUST00000075255.6, ENSMUST00000180580.9, ENSMUST00000223682.2, ENSMUST00000225479.2, ENSMUST00000225778.2

Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTAGGGTTTGTCGCCAATAAAATGTCCCTGGAGTACAGAAAGTGTTaGCTGAGAACTAAGGGCCTTACCACAGTCTTCAAAGTAGTAGGG +
Preference number: 1 (lower is better)
Translates to: VGFVANKMSLEYRKC*LRTKGLTTVFKVVG
Trigger: CCCTACTACTTTGAAGACTGTGGTAAGGCCCTTAGTTCTCAGGCAACACTTTCTGTACTCCAGGGACATTTTATTGGCGACAAACCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR GCA 90 bp GATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCTaGTCCCATTGGTTGAAGTATTCCACTGTGTCAGAGACTTACTTG +
Preference number: 1 (lower is better)
Translates to: DRGFPQEHVFVVHLS*SHWLKYSTVSETYL
Trigger: CAAGTAAGTCTCTGACACAGTGGAATACTTCAACCAATGGGAGCAGGATAAGTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR TCA 90 bp CTATGCTCAGTGAGTGCATTTGGCTTTGGTCCTTATCACAGTATGTaGCATTTGCTTTGGTCCTATTACAGTATGTGCATTTGTTGCTAT +
Preference number: 1 (lower is better)
Translates to: LCSVSAFGFGPYHSM*HLLWSYYSMCICCY
Trigger: ATAGCAACAAATGCACATACTGTAATAGGACCAAAGCAAATGTCACATACTGTGATAAGGACCAAAGCCAAATGCACTCACTGAGCATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp TTCCATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTGCCACACTCTTCAGCACATTCCCCATCCTTaGAGGGACTGTCTTCACAGA +
Preference number: 2 (lower is better)
Translates to: FHVPSVGRHRQTFCHTLQHIPHP*RDCLHR
Trigger: TCTGTGAAGACAGTCCCTTCAAGGATGGGGAATGTG...CTGAAGAGTGTGGCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACATGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp GTGTGGTTTCTCTTTGGTATGAGCTCTCATGCGTACAGGAAGTTATTGGCTGGTAGGTGGACCAGAAGGTaGAGGGAGAAGACAGAGAAA +
Preference number: 2 (lower is better)
Translates to: VWFLFGMSSHAYRKLLAGRWTRR*REKTEK
Trigger: TTTCTCTGTCTTCTCCCTCCACCTTCTGGTCCACCT...ACCAGCCAATAACTTCCTGTACGCATGAGAGCTCATACCAAAGAGAAACCACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR GCA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACAGCTGGCAGGCACCAATaGAGATCATTTCACCAAAGT +
Preference number: 2 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTAGRHQ*RSFHQS
Trigger: ACTTTGGTGAAATGATCTGCATTGGTGCCTGCCAGC...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR CAA 90 bp TACAAAAGTCCTTGGCACATGTGTAGGATTCCTCTTGACAGTGAATaGTTCCATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTGC +
Preference number: 2 (lower is better)
Translates to: YKSPWHMCRIPLDSE*FHVPSVGRHRQTFC
Trigger: GCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACATGGAACAATTCACTGTCAAGAGGAATCCTACACATGTGCCAAGGACTTTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR TCA 90 bp ATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTGCCACACTCTTCAGAGTTGGTTTCTCTTCAATGTaGACTGCTTTGTGTCTCCTA +
Preference number: 2 (lower is better)
Translates to: MSLQLGGTGKHFATLFRVGFSSM*TALCLL
Trigger: TAGGAGACACAAAGCAGTTCACATTGAAGAGAAACC...AACTCTGAAGAGTGTGGCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp CCTTTAGGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTACAGGAAGTGCTATTaGATGGTTGGTTCAGGTCCA +
Preference number: 2 (lower is better)
Translates to: PLGIRDRGFPQEHVFVVHYRKCY*MVGSGP
Trigger: TGGACCTGAACCAACCATCCAATAGCACTTCCTGTA...GTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCCTAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCCCAATAAAATGTCCCTaGAGTACAGAAAGTGTTGCC +
Preference number: 2 (lower is better)
Translates to: GIRDRGFPQEHVFVVHLSPIKCP*STESVA
Trigger: GGCAACACTTTCTGTACTCCAGGGACATTTTATTGG...GGATAAGTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR CAA 90 bp TCTAGGTGCACAGCATGTATTCATATTAACGCTGTTGTGTTTTCATaGCTGGAGCTTATCTGGGAGAAGATTTACCACCGCAACAATGGG +
Preference number: 2 (lower is better)
Translates to: SRCTACIHINAVVFS*LELIWEKIYHRNNG
Trigger: CCCATTGTTGCGGTGGTAAATCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAACAGCGTTAATATGAATACATGCTGTGCACCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR GCA 90 bp GCAGGCACCAATGCAGATCATTTCACCAAAGTCCATCTTGGTGAGAAATGTGAGTTTCTCTCTGTGAACTaGCTCAAGTCTCCTAAGAAA +
Preference number: 2 (lower is better)
Translates to: AGTNADHFTKVHLGEKCEFLSVN*LKSPKK
Trigger: TTTCTTAGGAGACTTGAGGCAGTTCACAGAGAGAAA...CTCACATTTCTCACCAAGATGGACTTTGGTGAAATGATCTGCATTGGTGCCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp CCTTTAGGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACCAAATCTATCATCTATaGTCAGTGAGTGCATTTGGC +
Preference number: 2 (lower is better)
Translates to: PLGIRDRGFPQEHVFVVHQIYHL*SVSAFG
Trigger: GCCAAATGCACTCACTGAGCATAGATGATAGATTTG...GTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCCTAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp TTCCATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTGCCACACTCTTCAGTCGATCACATTTCTATaGTTTCTCTTGACATTGTAC +
Preference number: 2 (lower is better)
Translates to: FHVPSVGRHRQTFCHTLQSITFL*FLLTLY
Trigger: GTACAATGTCAAGAGAAACCATAGAAATGTGATCGA...CTGAAGAGTGTGGCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR CAA 90 bp GCAGTTTATACCACAACAACAGATACAGAGGTACAGGAAGTGCTATaGGATGGTTGGTTCAGGTCCAAGTTTATTGTGGGTAACTACACA +
Preference number: 2 (lower is better)
Translates to: AVYTTTTDTEVQEVL*DGWFRSKFIVGNYT
Trigger: TGTGTAGTTACCCACAATAAACTTGGACCTGAACCAACCATCCAATAGCACTTCCTGTACCTCTGTATCTGTTGTTGTGGTATAAACTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp GTGTGGTTTCTCTTTGGTATGAGCTCTCATGCGTACAGGAAGTTATTGGCTGGTCTCTTCAATGTGAACTaGTTTGTGTCTCCTAAGAAA +
Preference number: 2 (lower is better)
Translates to: VWFLFGMSSHAYRKLLAGLFNVN*FVSPKK
Trigger: TTTCTTAGGAGACACAAAGCAGTTCACATTGAAGAG...ACCAGCCAATAACTTCCTGTACGCATGAGAGCTCATACCAAAGAGAAACCACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR GCA 90 bp CCCACTTACATATCTCTTTCTGCCAAGTTAGATGTCATTTCCCCAGGAGGTCTTCAAATCTATCATCTATaGTCAGTGAGTGCATTTGGC +
Preference number: 2 (lower is better)
Translates to: PTYISLSAKLDVISPGGLQIYHL*SVSAFG
Trigger: GCCAAATGCACTCACTGAGCATAGATGATAGATTTG...AAGACCTCCTGGGGAAATGACATCTAACTTGGCAGAAAGAGATATGTAAGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp TTCAGAGATCCTGAGTTCAATTTCCAGCAACCACATGGTACCTCACAACCATCTTTGTGTTTTCATTGCTaGAGCTTATCTGGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: FRDPEFNFQQPHGTSQPSLCFHC*SLSGRR
Trigger: TCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAA...AGATGGTTGTGAGGTACCATGTGGTTGCTGGAAATTGAACTCAGGATCTCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp TCAAAGATGTGTCTTTACTGTTATCTGCTCATATTCTTAGCATTTGTGCTCATGCAGAGCAGAAGCACATaGCCTGGAGAAACCCCAAGT +
Preference number: 2 (lower is better)
Translates to: SKMCLYCYLLIFLAFVLMQSRST*PGETPS
Trigger: ACTTGGGGTTTCTCCAGGCCATGTGCTTCTGCTCTG...CATGAGCACAAATGCTAAGAATATGAGCAGATAACAGTAAAGACACATCTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp ATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTGCCACACTCTTCAGAGTTGCTGATAACAGTCAATaGAAAAGATTTTCCATCGAT +
Preference number: 2 (lower is better)
Translates to: MSLQLGGTGKHFATLFRVADNSQ*KRFSID
Trigger: ATCGATGGAAAATCTTTTCCATTGACTGTTATCAGC...AACTCTGAAGAGTGTGGCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACAGGTCCAAGTTTATTGTaGGTAACTACACAAAACAGT +
Preference number: 2 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTGPSLL*VTTQNS
Trigger: ACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp CCCACTTACATATCTCTTTCTGCCAAGTTAGATGTCATTTCCCCAGGAGGTCTTGTGCTATTGGATGGTTaGTTCAGGTCCAAGTTTATT +
Preference number: 2 (lower is better)
Translates to: PTYISLSAKLDVISPGGLVLLDG*FRSKFI
Trigger: AATAAACTTGGACCTGAACCAACCATCCAATAGCAC...AAGACCTCCTGGGGAAATGACATCTAACTTGGCAGAAAGAGATATGTAAGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp CCCACTTACATATCTCTTTCTGCCAAGTTAGATGTCATTTCCCCAGGAGGTCTTGTGTTTCCTAAGATATaGGTGATGAAGAAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: PTYISLSAKLDVISPGGLVFPKI*VMKKGF
Trigger: AAAGCCTTTCTTCATCACTCATATCTTAGGAAACAC...AAGACCTCCTGGGGAAATGACATCTAACTTGGCAGAAAGAGATATGTAAGTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp AACAGGGAAGTATTAGAAGACAAGGCTTTTTCCCCATTGTTCACACTTCTATGGCTGTTGTGTTTTCATTaGTGGAGCTTATCTGGGAGA +
Preference number: 2 (lower is better)
Translates to: NREVLEDKAFSPLFTLLWLLCFH*WSLSGR
Trigger: TCTCCCAGATAAGCTCCAGCAATGAAAACACAACAG...CCATAGAAGTGTGAACAATGGGGAAAAAGCCTTGTCTTCTAATACTTCCCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR GCA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACAACAGTATGTGACATTTaGTTTGGTCCTATTACAGTA +
Preference number: 2 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTTVCDI*FGPITV
Trigger: TACTGTAATAGGACCAAAGCAAATGTCACATACTGT...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GCAGGCACCAATGCAGATCATTTCACCAAAGTCCATCTTGGTGAGAAATGTGAGAGATGTTCCTGTAGGTaGAAAGAACTAGAAAATCTT +
Preference number: 2 (lower is better)
Translates to: AGTNADHFTKVHLGEKCERCSCR*KELENL
Trigger: AAGATTTTCTAGTTCTTTCCACCTACAGGAACATCT...CTCACATTTCTCACCAAGATGGACTTTGGTGAAATGATCTGCATTGGTGCCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACAATGGTAACAACTTCATaGTGTATTGATAGTCACAGA +
Preference number: 2 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTMVTTS*CIDSHR
Trigger: TCTGTGACTATCAATACACCATGAAGTTGTTACCAT...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp CCTTTAGGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACCATGGGAAATGTCTATaGAATGGATTTGATGTCTTT +
Preference number: 2 (lower is better)
Translates to: PLGIRDRGFPQEHVFVVHHGKCL*NGFDVF
Trigger: AAAGACATCAAATCCATTCCATAGACATTTCCCATG...GTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCCTAAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp ACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGAATGCTGGCAGGCACCAATaGAGATCATTTCACCAAAGT +
Preference number: 2 (lower is better)
Translates to: TQNSFTDFYSDWFPRAENAGRHQ*RSFHQS
Trigger: ACTTTGGTGAAATGATCTGCATTGGTGCCTGCCAGC...ATTCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp CCCACTTACATATCTCTTTCTGCCAAGTTAGATGTCATTTCCCCAGGAGGTCTTAGATGTTCCTGTAGGTaGAAAGAACTAGAAAATCTT +
Preference number: 2 (lower is better)
Translates to: PTYISLSAKLDVISPGGLRCSCR*KELENL
Trigger: AAGATTTTCTAGTTCTTTCCACCTACAGGAACATCT...AAGACCTCCTGGGGAAATGACATCTAACTTGGCAGAAAGAGATATGTAAGTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTATCATCTATGCTCAGTaGGTGCATTTGGCTTTGGTC +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSIIYAQ*VHLALV
Trigger: GACCAAAGCCAAATGCACTCACTGAGCATAGATGAT...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGAACAAAGATAGTTTATTaGACATACGCCCAAGGACCG +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRTKIVY*TYAQGP
Trigger: CGGTCCTTGGGCGTATGTTCAATAAACTATCTTTGT...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp CCTATTACAGTATGTGCATTTGTTGCTATGAAAATGATGATGGTACACATACACACAGCGGTAAGATCCTaGAATGAGACACTGTTCACA +
Preference number: 2 (lower is better)
Translates to: PITVCAFVAMKMMMVHIHTAVRS*NETLFT
Trigger: TGTGAACAGTGTCTCATTGCAGGATCTTACCGCTGT...GTGTATGTGTACCATCATCATTTTCATAGCAACAAATGCACATACTGTAATAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GATGTGTCTTTACTGTTATCTGCTCATATTCTTAGCATTTGTGCTCATGGACATAGGAGAACTGATGATTaGGCAGATAAAAGGGAAGGT +
Preference number: 2 (lower is better)
Translates to: DVSLLLSAHILSICAHGHRRTDD*ADKREG
Trigger: ACCTTCCCTTTTATCTGCCCAATCATCAGTTCTCCT...ATGTCCATGAGCACAAATGCTAAGAATATGAGCAGATAACAGTAAAGACACATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp AACAGGGAAGTATTAGAAGACAAGGCTTTTTCCCCATTGTTCACACTTCTATGGCATACTCTTCACAAGTaGTTTCTCTTCAATGTGAAC +
Preference number: 2 (lower is better)
Translates to: NREVLEDKAFSPLFTLLWHTLHK*FLFNVN
Trigger: GTTCACATTGAAGAGAAACCACTTGTGAAGAGTATG...CCATAGAAGTGTGAACAATGGGGAAAAAGCCTTGTCTTCTAATACTTCCCTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CCA 90 bp AAATCTTTTGCCACATTATACACACTCATGGGAAATGTCTATGGAATGGATTTGCTCAGTGAGTGCATTTaGCTTTGGTCCTTATCACAG +
Preference number: 2 (lower is better)
Translates to: KSFATLYTLMGNVYGMDLLSECI*LWSLSQ
Trigger: CTGTGATAAGGACCAAAGCCAAATGCACTCACTGAG...CAAATCCATTCCATAGACATTTCCCATGAGTGTGTATAATGTGGCAAAAGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp GATGTGTCTTTACTGTTATCTGCTCATATTCTTAGCATTTGTGCTCATGGACATGAATCAGCATTCAGGTaGTTTCCTGTAAACCTTCTT +
Preference number: 2 (lower is better)
Translates to: DVSLLLSAHILSICAHGHESAFR*FPVNLL
Trigger: AAGAAGGTTTACAGGAAATCACCTGAATGCTGATTC...ATGTCCATGAGCACAAATGCTAAGAATATGAGCAGATAACAGTAAAGACACATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR TCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGACCTTATCACAGTATGTaGCATTTGCTTTGGTCCTAT +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRPYHSM*HLLWSY
Trigger: ATAGGACCAAAGCAAATGTCACATACTGTGATAAGG...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTTCTATGCTCAGTGAGTaGATTTGGCTTTGGTCCTTA +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSSMLSE*IWLWSL
Trigger: TAAGGACCAAAGCCAAATGCACTCACTGAGCATAGA...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp AATAGTTTTTATATCTCATACATAGGTGCCTATTCCAGGAGCAGTTTATACCACTCTATGCTCAGTGAGTaGATTTGGCTTTGGTCCTTA +
Preference number: 2 (lower is better)
Translates to: NSFYISYIGAYSRSSLYHSMLSE*IWLWSL
Trigger: TAAGGACCAAAGCCAAATGCACTCACTGAGCATAGA...GTGGTATAAACTGCTCCTGGAATAGGCACCTATGTATGAGATATAAAAACTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGACTCTCTAGTATGAACTaGTCTGTGTCTCCTAAGAAA +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRLSSMN*SVSPKK
Trigger: TTTCTTAGGAGACACAGAGCAGTTCATACTAGAGAG...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp AATAGTTTTTATATCTCATACATAGGTGCCTATTCCAGGAGCAGTTTATACCACATAGTAACTATACCATaGCCCAGTACTCAGGTTCAG +
Preference number: 2 (lower is better)
Translates to: NSFYISYIGAYSRSSLYHIVTIP*PSTQVQ
Trigger: CTGAACCTGAGTACTGGGCCATGGTATAGTTACTAT...GTGGTATAAACTGCTCCTGGAATAGGCACCTATGTATGAGATATAAAAACTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTATAGTAACTATACCATaGCCCAGTACTCAGGTTCAG +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSIVTIP*PSTQVQ
Trigger: CTGAACCTGAGTACTGGGCCATGGTATAGTTACTAT...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp CCTATTACAGTATGTGCATTTGTTGCTATGAAAATGATGATGGTACACATACACGAGTGCATTTGGCTTTaGTCCTTATCACAGTATGTG +
Preference number: 2 (lower is better)
Translates to: PITVCAFVAMKMMMVHIHECIWL*SLSQYV
Trigger: CACATACTGTGATAAGGACCAAAGCCAAATGCACTC...GTGTATGTGTACCATCATCATTTTCATAGCAACAAATGCACATACTGTAATAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp AAATCTTTTGCCACATTATACACACTCATGGGAAATGTCTATGGAATGGATTTGGAGTGCATTTGGCTTTaGTCCTTATCACAGTATGTG +
Preference number: 2 (lower is better)
Translates to: KSFATLYTLMGNVYGMDLECIWL*SLSQYV
Trigger: CACATACTGTGATAAGGACCAAAGCCAAATGCACTC...CAAATCCATTCCATAGACATTTCCCATGAGTGTGTATAATGTGGCAAAAGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGAGTGCTATTGGATGGTTaGTTCAGGTCCAAGTTTATT +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRVLLDG*FRSKFI
Trigger: AATAAACTTGGACCTGAACCAACCATCCAATAGCAC...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTCATTCTACACACTCATaGGGAGTATCTTCAGAATGG +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSHSTHS*GVSSEW
Trigger: CCATTCTGAAGATACTCCCCATGAGTGTGTAGAATG...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGATCAATGGCCTCATTGTaGTTGTTAAATTCATTGCCT +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRSMASL*LLNSLP
Trigger: AGGCAATGAATTTAACAATCACAATGAGGCCATTGA...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGATCTATGGAATGGATTTaGTGTCTTTTCAGGGATGTA +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRSMEWI*CLFRDV
Trigger: TACATCCCTGAAAAGACATCAAATCCATTCCATAGA...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTTTTCTCTCTGTGAACTaGCTCAAGTCTCCTAAGAAA +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSFLSVN*LKSPKK
Trigger: TTTCTTAGGAGACTTGAGGCAGTTCACAGAGAGAAA...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp ACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGAATTATCTCATACATAGGTaGCTATTCCAGGAGCAGTTT +
Preference number: 2 (lower is better)
Translates to: TQNSFTDFYSDWFPRAENYLIHR*LFQEQF
Trigger: AAACTGCTCCTGGAATAGGCACCTATGTATGAGATA...ATTCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp CCTATTACAGTATGTGCATTTGTTGCTATGAAAATGATGATGGTACACATACACTATCTCATACATAGGTaGCTATTCCAGGAGCAGTTT +
Preference number: 2 (lower is better)
Translates to: PITVCAFVAMKMMMVHIHYLIHR*LFQEQF
Trigger: AAACTGCTCCTGGAATAGGCACCTATGTATGAGATA...GTGTATGTGTACCATCATCATTTTCATAGCAACAAATGCACATACTGTAATAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTTCTTTCAGCACTTCCTaGGGGAGACAAACATTAATT +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSSFSTS*GRQTLI
Trigger: AATTAATGTTTGTCTCCCCCAGGAAGTGCTGAAAGA...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTTGCAGGATAGTAAAATaGATTTCCACACTCTTCACA +
Preference number: 2 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSCRIVK*ISTLFT
Trigger: TGTGAAGAGTGTGGAAATTCATTTTACTATCCTGCA...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR TCA 90 bp AAATCTTTTGCCACATTATACACACTCATGGGAAATGTCTATGGAATGGATTTGTCAGAATGGATGATTTaGTGTCTTTTAAGGGACGTA +
Preference number: 2 (lower is better)
Translates to: KSFATLYTLMGNVYGMDLSEWMI*CLLRDV
Trigger: TACGTCCCTTAAAAGACATCAAATCATCCATTCTGA...CAAATCCATTCCATAGACATTTCCCATGAGTGTGTATAATGTGGCAAAAGATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR CCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGATCAATTCCTTTATGCTaGTTAAGAAAGAAAGCAGAG +
Preference number: 2 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRSIPLC*LRKKAE
Trigger: CTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGA...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR GCA 90 bp AATAGTTTTTATATCTCATACATAGGTGCCTATTCCAGGAGCAGTTTATACCACACAGTATGTGACATTTaGTTTGGTCCTATTACAGTA +
Preference number: 2 (lower is better)
Translates to: NSFYISYIGAYSRSSLYHTVCDI*FGPITV
Trigger: TACTGTAATAGGACCAAAGCAAATGTCACATACTGT...GTGGTATAAACTGCTCCTGGAATAGGCACCTATGTATGAGATATAAAAACTATT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR GCA 72 bp CATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTaGCACACTCTTCAGAGTTGTGGTGTTGCTCTCCGG +
Preference number: 3 (lower is better)
Translates to: HVPSVGRHRQTF*HTLQSCGVALR
Trigger: CCGGAGAGCAACACCACAACTCTGAAGAGTGTGGCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR GCA 72 bp ACCAGGATGTCAGTTACCCACTTACATATCTCTTTCTaGCAAGTTAGATGTCATTTCCCCAGGAGGTCTTGG +
Preference number: 3 (lower is better)
Translates to: TRMSVTHLHISF*QVRCHFPRRSW
Trigger: CCAAGACCTCCTGGGGAAATGACATCTAACTTGGCAGAAAGAGATATGTAAGTGGGTAACTGACATCCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR GCA 72 bp GTCGCCAATAAAATGTCCCTGGAGTACAGAAAGTGTTaGCTGAGAACTAAGGGCCTTACCACAGTCTTCAAA +
Preference number: 3 (lower is better)
Translates to: VANKMSLEYRKC*LRTKGLTTVFK
Trigger: TTTGAAGACTGTGGTAAGGCCCTTAGTTCTCAGGCAACACTTTCTGTACTCCAGGGACATTTTATTGGCGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR CCA 72 bp TGGTATGAGCTCTCATGCGTACAGGAAGTTATTGGCTaGTACAAAAGTCCTTGGCACATGTGTAGGATTCCT +
Preference number: 3 (lower is better)
Translates to: WYELSCVQEVIG*YKSPWHMCRIP
Trigger: AGGAATCCTACACATGTGCCAAGGACTTTTGTACCAGCCAATAACTTCCTGTACGCATGAGAGCTCATACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CAA 90 bp GTGTGGTTTCTCTTTGGTATGAGCTCTCATGCGTACAGGAAGTTATTGGCTGGTAAGGCTTTTTCCCCATaGTTCACACTTCTATGGTTC +
Preference number: 3 (lower is better)
Translates to: VWFLFGMSSHAYRKLLAGKAFSP*FTLLWF
Trigger: GAACCATAGAAGTGTGAACAATGGGGAAAAAGCCTT...ACCAGCCAATAACTTCCTGTACGCATGAGAGCTCATACCAAAGAGAAACCACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CAA 90 bp ACTGTTCTTTCAGAGATCCTGAGTTCAATTTCCAGCAACCACATGGTACCTCACGGACGTGGTTTACACTaGTGTGGTTTCTCTTTGGTA +
Preference number: 3 (lower is better)
Translates to: TVLSEILSSISSNHMVPHGRGLH*CGFSLV
Trigger: TACCAAAGAGAAACCACACAAGTGTAAACCACGTCC...GTGAGGTACCATGTGGTTGCTGGAAATTGAACTCAGGATCTCTGAAAGAACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR TCA 72 bp AGATTAGAGATTTTCTATTCTGGAACCAAACGTGACTaGCAACCTGTTCTTTCAGCACTTCCTGGGGGAGAC +
Preference number: 3 (lower is better)
Translates to: RLEIFYSGTKRD*QPVLSALPGGD
Trigger: GTCTCCCCCAGGAAGTGCTGAAAGAACAGGTTGTCAGTCACGTTTGGTTCCAGAATAGAAAATCTCTAATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR TCA 72 bp AAGCAGATTAGAGATTTTCTATTCTGGAACCAAACGTaGCTGACAACCTGTTCTTTCAGCACTTCCTGGGGG +
Preference number: 3 (lower is better)
Translates to: KQIRDFLFWNQT*LTTCSFSTSWG
Trigger: CCCCCAGGAAGTGCTGAAAGAACAGGTTGTCAGTCACGTTTGGTTCCAGAATAGAAAATCTCTAATCTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR GCA 72 bp TTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCTaGTCCCATTGGTTGAAGTATTCCACTGTGTCAGAG +
Preference number: 3 (lower is better)
Translates to: FPQEHVFVVHLS*SHWLKYSTVSE
Trigger: CTCTGACACAGTGGAATACTTCAACCAATGGGAGCAGGATAAGTGCACAACAAAGACATGTTCCTGAGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR CCA 72 bp CCACAACAACAGATACAGAGGTACAGGAAGTGCTATTaGATGGTTGGTTCAGGTCCAAGTTTATTGTGGGTA +
Preference number: 3 (lower is better)
Translates to: PQQQIQRYRKCY*MVGSGPSLLWV
Trigger: TACCCACAATAAACTTGGACCTGAACCAACCATCCAATAGCACTTCCTGTACCTCTGTATCTGTTGTTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CAA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACATCACCAAAGTCCATCTaGGTGAGAAATGTGAGTTTA +
Preference number: 3 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTSPKSI*VRNVSL
Trigger: TAAACTCACATTTCTCACCAAGATGGACTTTGGTGA...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CAA 90 bp GGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCCTTTCCTTCGTATCTTaGGATGTCTCATCTATCATC +
Preference number: 3 (lower is better)
Translates to: GIRDRGFPQEHVFVVHLSLSFVS*DVSSII
Trigger: GATGATAGATGAGACATCCAAAGATACGAAGGAAAG...GGATAAGTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR CAA 90 bp GATGTGTCTTTACTGTTATCTGCTCATATTCTTAGCATTTGTGCTCATGGACATCGCGTAGAAAAAGCTTaGCCACATTCCCCATCCTTG +
Preference number: 3 (lower is better)
Translates to: DVSLLLSAHILSICAHGHRVEKA*PHSPSL
Trigger: CAAGGATGGGGAATGTGGCAAAGCTTTTTCTACGCG...ATGTCCATGAGCACAAATGCTAAGAATATGAGCAGATAACAGTAAAGACACATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR-3UTR CAA 90 bp CCTTTAGGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTATGTGACATTTGCTTaGGTCCTATTACAGTATGTG +
Preference number: 3 (lower is better)
Translates to: PLGIRDRGFPQEHVFVVHYVTFA*VLLQYV
Trigger: CACATACTGTAATAGGACCAAAGCAAATGTCACATA...GTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCCTAAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CAA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACAGATGTTGCTTCAGCATaGCAGGATAGTAAAATGAAT +
Preference number: 3 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTDVASA*QDSKMN
Trigger: ATTCATTTTACTATCCTGCAATGCTGAAGCAACATC...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR GCA 72 bp TTCCTAGGTCCCAACAATAATCAAATCTATCATCTATaGTCAGTGAGTGCATTTGGCTTTGGTCCTTATCAC +
Preference number: 3 (lower is better)
Translates to: FLGPNNNQIYHL*SVSAFGFGPYH
Trigger: GTGATAAGGACCAAAGCCAAATGCACTCACTGAGCATAGATGATAGATTTGATTATTGTTGGGACCTAGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR CCA 72 bp CATGTATTCATATTAACGCTGTTGTGTTTTCATTGCTaGAGCTTATCTGGGAGAAGATTTACCACCGCAACA +
Preference number: 3 (lower is better)
Translates to: HVFILTLLCFHC*SLSGRRFTTAT
Trigger: TGTTGCGGTGGTAAATCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAACAGCGTTAATATGAATACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
3UTR CCA 72 bp CTTACAAAACCCATAAGAGACATTATTACAGGCGCTTaGGTGACCCTGCTGGGAAAAACAATAGTAACTATA +
Preference number: 3 (lower is better)
Translates to: LTKPIRDIITGA*VTLLGKTIVTI
Trigger: TATAGTTACTATTGTTTTTCCCAGCAGGGTCACCCAAGCGCCTGTAATAATGTCTCTTATGGGTTTTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR TCA 72 bp GTCCCAACAATAATCAAATCTATCATCTATGCTCAGTaGGTGCATTTGGCTTTGGTCCTTATCACAGTATGT +
Preference number: 3 (lower is better)
Translates to: VPTIIKSIIYAQ*VHLALVLITVC
Trigger: ACATACTGTGATAAGGACCAAAGCCAAATGCACTCACTGAGCATAGATGATAGATTTGATTATTGTTGGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR GCA 72 bp CATTTGGCTTTGGTCCTTATCACAGTATGTGACATTTaGTTTGGTCCTATTACAGTATGTGCATTTGTTGCT +
Preference number: 3 (lower is better)
Translates to: HLALVLITVCDI*FGPITVCAFVA
Trigger: AGCAACAAATGCACATACTGTAATAGGACCAAAGCAAATGTCACATACTGTGATAAGGACCAAAGCCAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR-3UTR CAA 90 bp AATAGTTTTTATATCTCATACATAGGTGCCTATTCCAGGAGCAGTTTATACCACGACAAAGATAGTTTATaGAACATACGCCCAAGGACC +
Preference number: 3 (lower is better)
Translates to: NSFYISYIGAYSRSSLYHDKDSL*NIRPRT
Trigger: GGTCCTTGGGCGTATGTTCAATAAACTATCTTTGTC...GTGGTATAAACTGCTCCTGGAATAGGCACCTATGTATGAGATATAAAAACTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR TCA 72 bp TTTCTCTCTGTGAACTGCCTCAAGTCTCCTAAGAAATaGATGATAAAGAAAGGCTTTGTGACAGTCTTCATA +
Preference number: 3 (lower is better)
Translates to: FLSVNCLKSPKK*MIKKGFVTVFI
Trigger: TATGAAGACTGTCACAAAGCCTTTCTTTATCATTCATTTCTTAGGAGACTTGAGGCAGTTCACAGAGAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR CCA 72 bp TGCTATTGGATGGTTGGTTCAGGTCCAAGTTTATTGTaGGTAACTACACAAAACAGTTTTACTGACTTCTAT +
Preference number: 3 (lower is better)
Translates to: CYWMVGSGPSLL*VTTQNSFTDFY
Trigger: ATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACCTGAACCAACCATCCAATAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR CCA 72 bp TACCATAACAAATGTCTCAATGTTCATGGTAAATCCTaGCTTTCCTTCGTATCTTTGGATGTCTCATCTATC +
Preference number: 3 (lower is better)
Translates to: YHNKCLNVHGKS*LSFVSLDVSSI
Trigger: GATAGATGAGACATCCAAAGATACGAAGGAAAGCCAGGATTTACCATGAACATTGAGACATTTGTTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
3UTR-3UTR CAA 90 bp ACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGAATCATTCATGTATTAATTaGGCAACCAGGATGTCAGTT +
Preference number: 3 (lower is better)
Translates to: TQNSFTDFYSDWFPRAENHSCIN*ATRMSV
Trigger: AACTGACATCCTGGTTGCCAAATTAATACATGAATG...ATTCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
3UTR TCA 72 bp TATACACACTCATGGGAAATGTCTATGGAATGGATTTaGTGTCTTTTCAGGGATGTAAAGGAAGAAAAACAT +
Preference number: 3 (lower is better)
Translates to: YTHSWEMSMEWI*CLFRDVKEEKH
Trigger: ATGTTTTTCTTCCTTTACATCCCTGAAAAGACATCAAATCCATTCCATAGACATTTCCCATGAGTGTGTATA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp GCTTTGCCACATTCCCCATCCTTGAAGGGACTGTCTTCACAGAATTGTTTGATGCTGCTTTGTGTCTCCTaGAGGCACGGTGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ALPHSPSLKGLSSQNCLMLLCVS*RHGACS
Trigger: AGAGCAGGCACCGTGCCTCCAGGAGACACAAAGCAG...CATCAAACAATTCTGTGAAGACAGTCCCTTCAAGGATGGGGAATGTGGCAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225778.2
CDS-3UTR TCA 90 bp GCTTTGCCACATTCCCCATCCTTGAAGGGACTGTCTTCACAGAATTGTTTGATGTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACC +
Preference number: 4 (lower is better)
Translates to: ALPHSPSLKGLSSQNCLMWRNGG*CLAFHT
Trigger: GGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCA...CATCAAACAATTCTGTGAAGACAGTCCCTTCAAGGATGGGGAATGTGGCAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057241.15
ENSMUST00000225778.2
CDS-3UTR CCA 90 bp CCTTTAGGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACCCCAGGAAATCAAGGTaGCTGAAATTCTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: PLGIRDRGFPQEHVFVVHPRKSR*LKFSSI
Trigger: GATGCTGGAGAATTTCAGCCACCTTGATTTCCTGGG...GTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCCTAAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp GGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCCCCAGGAAATCAAGGTaGCTGAAATTCTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: GIRDRGFPQEHVFVVHLSPRKSR*LKFSSI
Trigger: GATGCTGGAGAATTTCAGCCACCTTGATTTCCTGGG...GGATAAGTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp GTTGTGTTTTCATTGCTGGAGCTTATCTGGGAGAAGATTTACCACCGCAACAATATTGCCTGTTATTCCTaGAGGCACGGTGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: VVFSLLELIWEKIYHRNNIACYS*RHGACS
Trigger: AGAGCAGGCACCGTGCCTCCAGGAATAACAGGCAAT...ATTGTTGCGGTGGTAAATCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR TCA 90 bp CATTGCCTGTTGTTCCAATGGACATGTCATCCAGACAAAAACAGGGAAGAAATGTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACC +
Preference number: 4 (lower is better)
Translates to: HCLLFQWTCHPDKNREEMWRNGG*CLAFHT
Trigger: GGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCA...CATTTCTTCCCTGTTTTTGTCTGGATGACATGTCCATTGGAACAACAGGCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223682.2
CDS-3UTR CCA 90 bp TTCAGAGATCCTGAGTTCAATTTCCAGCAACCACATGGTACCTCACAACCATCTCCCAGGAAATCAAGGTaGCTGAAATTCTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: FRDPEFNFQQPHGTSQPSPRKSR*LKFSSI
Trigger: GATGCTGGAGAATTTCAGCCACCTTGATTTCCTGGG...AGATGGTTGTGAGGTACCATGTGGTTGCTGGAAATTGAACTCAGGATCTCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR CCA 90 bp ACTGTTCTTTCAGAGATCCTGAGTTCAATTTCCAGCAACCACATGGTACCTCACGACCTGGAGGAATGGTaGCTGATGTTTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: TVLSEILSSISSNHMVPHDLEEW*LMFGFS
Trigger: TGAAAAGCCAAACATCAGCCACCATTCCTCCAGGTC...GTGAGGTACCATGTGGTTGCTGGAAATTGAACTCAGGATCTCTGAAAGAACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR CCA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACATTCCTGGAGGAATGGTaGCTGATGTTTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTFLEEW*LMFGFS
Trigger: TGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAA...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075255.6
CDS-3UTR CCA 90 bp GGCCCAGTACTCAGGTTCAGGCAACCTAAACAACAATGTAACAGCATGGTAACATTGTTCCTGGAGGAATaGTGGCTGATGTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: GPVLRFRQPKQQCNSMVTLFLEE*WLMFGF
Trigger: AAAGCCAAACATCAGCCACCATTCCTCCAGGAACAA...TGTTACCATGCTGTTACATTGTTGTTTAGGTTGCCTGAACCTGAGTACTGGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075255.6
CDS-3UTR CCA 90 bp TTGCCTGTTGTTCCAATGGACATGTCATCCAGACAAAAACAGGGAAGAAATGGACCCAGGAAATCAAGGTaGCTGAAATTCTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: LPVVPMDMSSRQKQGRNGPRKSR*LKFSSI
Trigger: GATGCTGGAGAATTTCAGCCACCTTGATTTCCTGGG...TCCATTTCTTCCCTGTTTTTGTCTGGATGACATGTCCATTGGAACAACAGGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223682.2
CDS-3UTR CCA 90 bp GCAGGCACCAATGCAGATCATTTCACCAAAGTCCATCTTGGTGAGAAATGTGAGCCAATAAAATGTCCCTaGAGTACAGAAAGTGTTGCC +
Preference number: 4 (lower is better)
Translates to: AGTNADHFTKVHLGEKCEPIKCP*STESVA
Trigger: GGCAACACTTTCTGTACTCCAGGGACATTTTATTGG...CTCACATTTCTCACCAAGATGGACTTTGGTGAAATGATCTGCATTGGTGCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075255.6
3UTR CAA 72 bp ACCACAACAACAGATACAGAGGTACAGGAAGTGCTATaGGATGGTTGGTTCAGGTCCAAGTTTATTGTGGGT +
Preference number: 4 (lower is better)
Translates to: TTTTDTEVQEVL*DGWFRSKFIVG
Trigger: ACCCACAATAAACTTGGACCTGAACCAACCATCCAATAGCACTTCCTGTACCTCTGTATCTGTTGTTGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR GCA 90 bp GGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCCTCTCTAGTATGAACTaGTCTGTGTCTCCTAAGAAA +
Preference number: 4 (lower is better)
Translates to: GIRDRGFPQEHVFVVHLSLSSMN*SVSPKK
Trigger: TTTCTTAGGAGACACAGAGCAGTTCATACTAGAGAG...GGATAAGTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075255.6
CDS-3UTR CCA 90 bp CTTGTGCTGAAACAGGGAAGTATTAGAAGACAAGGCTTTTTCCCCATTGTTCACTTCCTGGAGGAATGGTaGCTGATGTTTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: LVLKQGSIRRQGFFPIVHFLEEW*LMFGFS
Trigger: TGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAA...GTGAACAATGGGGAAAAAGCCTTGTCTTCTAATACTTCCCTGTTTCAGCACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225778.2
CDS-3UTR TCA 90 bp TTGTGTTTTCATTGCTGGAGCTTATCTGGGAGAAGATTTACCACCGCAACAATGCAGTATGAACTGTCTTaGACTTGTCTCATTGCCTGT +
Preference number: 4 (lower is better)
Translates to: LCFHCWSLSGRRFTTATMQYELS*TCLIAC
Trigger: ACAGGCAATGAGACAAGTTCAAGACAGTTCATACTG...CATTGTTGCGGTGGTAAATCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR TCA 90 bp CCTTTAGGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTCTATGGAATGGATTTaGTGTCTTTTCAGGGATGTA +
Preference number: 4 (lower is better)
Translates to: PLGIRDRGFPQEHVFVVHSMEWI*CLFRDV
Trigger: TACATCCCTGAAAAGACATCAAATCCATTCCATAGA...GTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCCTAAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075255.6
CDS-3UTR TCA 90 bp CTGAAACAGGGAAGTATTAGAAGACAAGGCTTTTTCCCCATTGTTCACACTTCTGGTTTCTCTTCAATGTaGACTGCTTTGTGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: LKQGSIRRQGFFPIVHTSGFSSM*TALCLL
Trigger: CAGGAGACACAAAGCAGTTCACATTGAAGAGAAACC...AGAAGTGTGAACAATGGGGAAAAAGCCTTGTCTTCTAATACTTCCCTGTTTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225778.2
CDS-3UTR GCA 90 bp CCCACTTACATATCTCTTTCTGCCAAGTTAGATGTCATTTCCCCAGGAGGTCTTGAAGATCCTTGGTTTTaGTCCAGAAATGTTACCAAG +
Preference number: 4 (lower is better)
Translates to: PTYISLSAKLDVISPGGLEDPWF*SRNVTK
Trigger: CTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTC...AAGACCTCCTGGGGAAATGACATCTAACTTGGCAGAAAGAGATATGTAAGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp TTGTGTTTTCATTGCTGGAGCTTATCTGGGAGAAGATTTACCACCGCAACAATGACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: LCFHCWSLSGRRFTTATMTPEDP*FCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGT...CATTGTTGCGGTGGTAAATCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR CCA 90 bp CTTGTGCTGAAACAGGGAAGTATTAGAAGACAAGGCTTTTTCCCCATTGTTCACACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: LVLKQGSIRRQGFFPIVHTPEDP*FCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGT...GTGAACAATGGGGAAAAAGCCTTGTCTTCTAATACTTCCCTGTTTCAGCACAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057241.15
ENSMUST00000225778.2
CDS-3UTR CCA 90 bp AACAGGGAAGTATTAGAAGACAAGGCTTTTTCCCCATTGTTCACACTTCTATGGTTGTTCCTGGAGGAATaGTGGCTGATGTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: NREVLEDKAFSPLFTLLWLFLEE*WLMFGF
Trigger: AAAGCCAAACATCAGCCACCATTCCTCCAGGAACAA...CCATAGAAGTGTGAACAATGGGGAAAAAGCCTTGTCTTCTAATACTTCCCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225778.2
3UTR CAA 72 bp AGTCTAGGTGCACAGCATGTATTCATATTAACGCTGTaGTGTTTTCATTGCTGGAGCTTATCTGGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: SLGAQHVFILTL*CFHCWSLSGRR
Trigger: TCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAACAGCGTTAATATGAATACATGCTGTGCACCTAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR TCA 90 bp GGTCCAAGTTTATTGTGGGTAACTACACAAAACAGTTTTACTGACTTCTATAGTTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACC +
Preference number: 4 (lower is better)
Translates to: GPSLLWVTTQNSFTDFYSWRNGG*CLAFHT
Trigger: GGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCA...ACTATAGAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR TCA 90 bp GAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTTTCCCATGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACC +
Preference number: 4 (lower is better)
Translates to: ESIPLCWLRKKAEENTFPWRNGG*CLAFHT
Trigger: GGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCA...TGGGAAAGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000180580.9
ENSMUST00000225479.2
CDS-3UTR GCA 90 bp GTTGTGTTTTCATTGCTGGAGCTTATCTGGGAGAAGATTTACCACCGCAACAATGAAGATCCTTGGTTTTaGTCCAGAAATGTTACCAAG +
Preference number: 4 (lower is better)
Translates to: VVFSLLELIWEKIYHRNNEDPWF*SRNVTK
Trigger: CTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTC...ATTGTTGCGGTGGTAAATCTTCTCCCAGATAAGCTCCAGCAATGAAAACACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR CCA 90 bp TCTCCGGAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTCCCAGGAAATCAAGGTaGCTGAAATTCTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: SPESIPLCWLRKKAEENTPRKSR*LKFSSI
Trigger: GATGCTGGAGAATTTCAGCCACCTTGATTTCCTGGG...AGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTCCGGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000180580.9
ENSMUST00000225479.2
CDS-3UTR CCA 90 bp GGAATTAGGGATAGGGGGTTTCCTCAGGAACATGTCTTTGTTGTGCACTTATCCCATGGGAAATGTCTATaGAATGGATTTGATGTCTTT +
Preference number: 4 (lower is better)
Translates to: GIRDRGFPQEHVFVVHLSHGKCL*NGFDVF
Trigger: AAAGACATCAAATCCATTCCATAGACATTTCCCATG...GGATAAGTGCACAACAAAGACATGTTCCTGAGGAAACCCCCTATCCCTAATTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075255.6
CDS-3UTR CCA 90 bp CTACACAAAACAGTTTTACTGACTTCTATAGTGATTGGTTTCCAAGAGCAGAGACACCTGGAGGAATGGTaGCTGATGTTTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: LHKTVLLTSIVIGFQEQRHLEEW*LMFGFS
Trigger: TGAAAAGCCAAACATCAGCCACCATTCCTCCAGGTG...TCTCTGCTCTTGGAAACCAATCACTATAGAAGTCAGTAAAACTGTTTTGTGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp TTAAATTCATTGCCTGTTGTTCCAATGGACATGTCATCCAGACAAAAACAGGGATACCTGGAGGAATGGTaGCTGATGTTTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: LNSLPVVPMDMSSRQKQGYLEEW*LMFGFS
Trigger: TGAAAAGCCAAACATCAGCCACCATTCCTCCAGGTA...TCCCTGTTTTTGTCTGGATGACATGTCCATTGGAACAACAGGCAATGAATTTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223682.2
CDS-3UTR CCA 90 bp TTAAATTCATTGCCTGTTGTTCCAATGGACATGTCATCCAGACAAAAACAGGGAACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: LNSLPVVPMDMSSRQKQGTPEDP*FCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGT...TCCCTGTTTTTGTCTGGATGACATGTCCATTGGAACAACAGGCAATGAATTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223682.2
CDS-3UTR CCA 90 bp TCTCCGGAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTTTCCTGGAGGAATGGTaGCTGATGTTTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: SPESIPLCWLRKKAEENTFLEEW*LMFGFS
Trigger: TGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAA...AGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTCCGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225479.2
3UTR CAA 72 bp TCTTACAAAACCCATAAGAGACATTATTACAGGCGCTaGGGTGACCCTGCTGGGAAAAACAATAGTAACTAT +
Preference number: 4 (lower is better)
Translates to: SYKTHKRHYYRR*GDPAGKNNSNY
Trigger: ATAGTTACTATTGTTTTTCCCAGCAGGGTCACCCAAGCGCCTGTAATAATGTCTCTTATGGGTTTTGTAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp TCTCCGGAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: SPESIPLCWLRKKAEENTTPEDP*FCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGT...AGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTCCGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000180580.9
ENSMUST00000225479.2
CDS-3UTR CCA 90 bp GAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTTTCCCATTGTTCCTGGAGGAATaGTGGCTGATGTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: ESIPLCWLRKKAEENTFPLFLEE*WLMFGF
Trigger: AAAGCCAAACATCAGCCACCATTCCTCCAGGAACAA...TGGGAAAGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225479.2
3UTR CAA 72 bp AAGTGCTATTGGATGGTTGGTTCAGGTCCAAGTTTATaGTGGGTAACTACACAAAACAGTTTTACTGACTTC +
Preference number: 4 (lower is better)
Translates to: KCYWMVGSGPSL*WVTTQNSFTDF
Trigger: GAAGTCAGTAAAACTGTTTTGTGTAGTTACCCACAATAAACTTGGACCTGAACCAACCATCCAATAGCACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR GCA 90 bp GTGATTGTTAAATTCATTGCCTGTTGTTCCAATGGACATGTCATCCAGACAAAAGAAGATCCTTGGTTTTaGTCCAGAAATGTTACCAAG +
Preference number: 4 (lower is better)
Translates to: VIVKFIACCSNGHVIQTKEDPWF*SRNVTK
Trigger: CTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTC...TTTTGTCTGGATGACATGTCCATTGGAACAACAGGCAATGAATTTAACAATCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223682.2
CDS-3UTR GCA 90 bp TCTCCGGAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTGAAGATCCTTGGTTTTaGTCCAGAAATGTTACCAAG +
Preference number: 4 (lower is better)
Translates to: SPESIPLCWLRKKAEENTEDPWF*SRNVTK
Trigger: CTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTC...AGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTCCGGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000180580.9
ENSMUST00000225479.2
CDS-3UTR CCA 90 bp AATAGTTTTTATATCTCATACATAGGTGCCTATTCCAGGAGCAGTTTATACCACACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: NSFYISYIGAYSRSSLYHTPEDP*FCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGT...GTGGTATAAACTGCTCCTGGAATAGGCACCTATGTATGAGATATAAAAACTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS-3UTR CCA 90 bp GAATCAATTCCTTTATGCTGGTTAAGAAAGAAAGCAGAGGAAAATACTTTCCCAACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: ESIPLCWLRKKAEENTFPTPEDP*FCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGT...TGGGAAAGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000180580.9
ENSMUST00000225479.2
CDS-3UTR GCA 90 bp CCTATTACAGTATGTGCATTTGTTGCTATGAAAATGATGATGGTACACATACACGAAGATCCTTGGTTTTaGTCCAGAAATGTTACCAAG +
Preference number: 4 (lower is better)
Translates to: PITVCAFVAMKMMMVHIHEDPWF*SRNVTK
Trigger: CTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTC...GTGTATGTGTACCATCATCATTTTCATAGCAACAAATGCACATACTGTAATAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075255.6
ENSMUST00000180580.9
CDS TCA 90 bp TGTGTCTCCTGGAGGCACGGTGCCTGCTCTTTGTCGTTTCACACCTaGAGACGCTTGGTTTCGCTCCAGACATGTTACCAAGTATGGCTT +
Preference number: 5 (lower is better)
Translates to: CVSWRHGACSLSFHT*RRLVSLQTCYQVWL
Trigger: AAGCCATACTTGGTAACATGTCTGGAGCGAAACCAAGCGTCTTCAGGTGTGAAACGACAAAGAGCAGGCACCGTGCCTCCAGGAGACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225778.2
CDS TCA 90 bp TACCAAGTATGGCTTAGTGACGGCAAGACCTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACCCGAAGATCCTTGGTTTTGCTCCAG +
Preference number: 5 (lower is better)
Translates to: YQVWLSDGKTWRNGG*CLAFHTRRSLVLLQ
Trigger: CTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAGGTCTTGCCGTCACTAAGCCATACTTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS TCA 90 bp TGTTATTCCTGGAGGCACGGTGCCTGCTCTTTGTCGTTTCACACCTaGAGACGCTTGGTTTCGCTCCAGACATGTTACCAAGTATGGCTT +
Preference number: 5 (lower is better)
Translates to: CYSWRHGACSLSFHT*RRLVSLQTCYQVWL
Trigger: AAGCCATACTTGGTAACATGTCTGGAGCGAAACCAAGCGTCTTCAGGTGTGAAACGACAAAGAGCAGGCACCGTGCCTCCAGGAATAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS-3UTR CAA 90 bp TTCCATGTCCCTTCAGTTGGGAGGCACAGGCAAACATTTTGCCACACTCTTCAGCTTGAACTTGTCTCATaGCCTGTTATTCCTGGAGGC +
Preference number: 5 (lower is better)
Translates to: FHVPSVGRHRQTFCHTLQLELVS*PVIPGG
Trigger: GCCTCCAGGAATAACAGGCAATGAGACAAGTTCAAG...CTGAAGAGTGTGGCAAAATGTTTGCCTGTGCCTCCCAACTGAAGGGACATGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS TCA 90 bp GTGATTGTTAAATTCATTGCCTGTTGTTCCTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACCCGAAGATCCTTGGTTTTGCTCCAG +
Preference number: 5 (lower is better)
Translates to: VIVKFIACCSWRNGG*CLAFHTRRSLVLLQ
Trigger: CTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAACAACAGGCAATGAATTTAACAATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075255.6
ENSMUST00000225479.2
ENSMUST00000225778.2
CDS CCA 90 bp TTAAATTCATTGCCTGTTGTTCCTGGAGGAATGGTGGCTGATGTTTaGCTTTTCACACCCGAAGATCCTTGGTTTTGCTCCAGAAATGTT +
Preference number: 5 (lower is better)
Translates to: LNSLPVVPGGMVADV*LFTPEDPWFCSRNV
Trigger: AACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAACAACAGGCAATGAATTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075255.6
ENSMUST00000225479.2
ENSMUST00000225778.2
CDS CCA 72 bp AGACGCTTGGTTTCGCTCCAGACATGTTACCAAGTATaGCTTAGTGACGGCAAGACCTGGAGGAATGGTGGC +
Preference number: 6 (lower is better)
Translates to: RRLVSLQTCYQV*LSDGKTWRNGG
Trigger: GCCACCATTCCTCCAGGTCTTGCCGTCACTAAGCCATACTTGGTAACATGTCTGGAGCGAAACCAAGCGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS TCA 72 bp TGGCTTAGTGACGGCAAGACCTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACCCGAAGATCCTTGGTT +
Preference number: 6 (lower is better)
Translates to: WLSDGKTWRNGG*CLAFHTRRSLV
Trigger: AACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAGGTCTTGCCGTCACTAAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS CCA 72 bp TTGCCTGTTGTTCCTGGAGGAATGGTGGCTGATGTTTaGCTTTTCACACCCGAAGATCCTTGGTTTTGCTCC +
Preference number: 6 (lower is better)
Translates to: LPVVPGGMVADV*LFTPEDPWFCS
Trigger: GGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAACAACAGGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075255.6
ENSMUST00000225479.2
ENSMUST00000225778.2
CDS CAA 72 bp TTTCTCTCCAGTATGAACTGTCTTGAACTTGTCTCATaGCCTGTTATTCCTGGAGGCACGGTGCCTGCTCTT +
Preference number: 6 (lower is better)
Translates to: FLSSMNCLELVS*PVIPGGTVPAL
Trigger: AAGAGCAGGCACCGTGCCTCCAGGAATAACAGGCAATGAGACAAGTTCAAGACAGTTCATACTGGAGAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057241.15
CDS TCA 72 bp AAATTCATTGCCTGTTGTTCCTGGAGGAATGGTGGCTaGTGTTTGGCTTTTCACACCCGAAGATCCTTGGTT +
Preference number: 6 (lower is better)
Translates to: KFIACCSWRNGG*CLAFHTRRSLV
Trigger: AACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAGGAACAACAGGCAATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075255.6
ENSMUST00000225479.2
ENSMUST00000225778.2
CDS CCA 72 bp GTGGCTGATGTTTGGCTTTTCACACCCGAAGATCCTTaGTTTTGCTCCAGAAATGTTACCAAGTATGGTTTA +
Preference number: 6 (lower is better)
Translates to: VADVWLFTPEDP*FCSRNVTKYGL
Trigger: TAAACCATACTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000057241.15
ENSMUST00000075255.6
ENSMUST00000180580.9
ENSMUST00000223682.2
ENSMUST00000225479.2
ENSMUST00000225778.2
CDS GCA 72 bp GATGTTTGGCTTTTCACACCCGAAGATCCTTGGTTTTaGTCCAGAAATGTTACCAAGTATGGTTTAGCAACA +
Preference number: 6 (lower is better)
Translates to: DVWLFTPEDPWF*SRNVTKYGLAT
Trigger: TGTTGCTAAACCATACTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000057241.15
ENSMUST00000075255.6
ENSMUST00000180580.9
ENSMUST00000223682.2
ENSMUST00000225479.2
ENSMUST00000225778.2