Pregenerated sensors for ZFP872 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074472Ensembl transcript IDs: ENSMUST00000091508.5, ENSMUST00000178901.8, ENSMUST00000217301.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACAGTTTTAAGAATGAGCATATGGGGGCTGGAGAGACGGCTCAGTaGTTAAGAGCACCGACTCTTCTTCCAGAGGTCCTGAGTTCAATT | + |
|
Preference number: 1 (lower is better) Translates to: HSFKNEHMGAGETAQ*LRAPTLLPEVLSSI Trigger: AATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGCTCTTAACCACTGAGCCGTCTCTCCAGCCCCCATATGCTCATTCTTAAAACTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR TCA 90 bp | CACTTCTTAAGGGTCCTCTTCACATGTTTGGAAGGCGCAGAGTACTaGTGGTTTCCCACAATGCTTGCATTCATCAAGCTATCCTGTAAT | + |
|
Preference number: 1 (lower is better) Translates to: HFLRVLFTCLEGAEY*WFPTMLAFIKLSCN Trigger: ATTACAGGATAGCTTGATGAATGCAAGCATTGTGGGAAACCATCAGTACTCTGCGCCTTCCAAACATGTGAAGAGGACCCTTAAGAAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR GCA 90 bp | TCTTCACATGTTTGGAAGGCGCAGAGTACTGATGGTTTCCCACAATaGTTGCATTCATCAAGCTATCCTGTAATACAAGTTTGTGGTTTC | + |
|
Preference number: 1 (lower is better) Translates to: SSHVWKAQSTDGFPQ*LHSSSYPVIQVCGF Trigger: GAAACCACAAACTTGTATTACAGGATAGCTTGATGAATGCAAGCATTGTGGGAAACCATCAGTACTCTGCGCCTTCCAAACATGTGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTAGGAGCGAGAACATCTaGAGGCCTTCCCACACTGCT | + |
|
Preference number: 2 (lower is better) Translates to: YFSKQESIFKGQWDNGRLRSENI*RPSHTA Trigger: AGCAGTGTGGGAAGGCCTTCAGATGTTCTCGCTCCT...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR GCA 90 bp | GCACCGACTCTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGATGGTTTCCCACAATaGTTGCATTCATCAAGCTAT | + |
|
Preference number: 2 (lower is better) Translates to: APTLLPEVLSSIPSNHMVDGFPQ*LHSSSY Trigger: ATAGCTTGATGAATGCAAGCATTGTGGGAAACCATC...CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTCAGAACTGGAGCAGCTaGAAGCCTTCCCATACTGCT | + |
|
Preference number: 2 (lower is better) Translates to: YFSKQESIFKGQWDNGRLQNWSS*KPSHTA Trigger: AGCAGTATGGGAAGGCTTTCAGCTGCTCCAGTTCTG...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCAAAGAATGAGAGCAACTaGAGGCCTTGTGGCACTGCT | + |
|
Preference number: 2 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSKNESN*RPCGTA Trigger: AGCAGTGCCACAAGGCCTTCAGTTGCTCTCATTCTT...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | ATACAAGTTTGTGGTTTCCAGATAACTGAGCAACTGAGGACTTTTATACACTACTGGATCCGGAAAGAATaGGAGCAACTGAAGGCCTTG | + |
|
Preference number: 2 (lower is better) Translates to: IQVCGFQITEQLRTFIHYWIRKE*EQLKAL Trigger: CAAGGCCTTCAGTTGCTCTCATTCTTTCCGGATCCA...GTAGTGTATAAAAGTCCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTGATCATTGCCCATTATaGGTTCTTCCATGTATTCTG | + |
|
Preference number: 2 (lower is better) Translates to: YFSKQESIFKGQWDNGRLDHCPL*VLPCIL Trigger: CAGAATACATGGAAGAACTCATAATGGGCAATGATC...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCAATCTATGTGGCCTTATaGAGTTGCATATCCACTGAA | + |
|
Preference number: 2 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSIYVAL*SCISTE Trigger: TTCAGTGGATATGCAACTTCATAAGGCCACATAGAT...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR CCA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCACCCTGTGTATCTATGTaGCCTTATGAAGTTGCATAT | + |
|
Preference number: 2 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSPCVSM*PYEVAY Trigger: ATATGCAACTTCATAAGGCCACATAGATACACAGGG...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR CCA 90 bp | AACTTACATGGAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGACACTACCTAATGTATaGGGTTTATTTTCCCCTGTG | + |
|
Preference number: 2 (lower is better) Translates to: NLHGTSSYCPHLQNSFPVTLPNV*GLFSPV Trigger: CACAGGGGAAAATAAACCCCATACATTAGGTAGTGT...CACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTCCATGTAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR TCA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCATCACAACTAGAGAAATaGGAGGTTTTCCAGTTCTAT | + |
|
Preference number: 2 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSSQLEK*EVFQFY Trigger: ATAGAACTGGAAAACCTCTCATTTCTCTAGTTGTGA...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR CCA 72 bp | AAGAATGAGCATATGGGGGCTGGAGAGACGGCTCAGTaGTTAAGAGCACCGACTCTTCTTCCAGAGGTCCTG | + |
|
Preference number: 3 (lower is better) Translates to: KNEHMGAGETAQ*LRAPTLLPEVL Trigger: CAGGACCTCTGGAAGAAGAGTCGGTGCTCTTAACCACTGAGCCGTCTCTCCAGCCCCCATATGCTCATTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR TCA 72 bp | AGGGTCCTCTTCACATGTTTGGAAGGCGCAGAGTACTaGTGGTTTCCCACAATGCTTGCATTCATCAAGCTA | + |
|
Preference number: 3 (lower is better) Translates to: RVLFTCLEGAEY*WFPTMLAFIKL Trigger: TAGCTTGATGAATGCAAGCATTGTGGGAAACCATCAGTACTCTGCGCCTTCCAAACATGTGAAGAGGACCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR CAA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCAGGTTTCCCACAATGCTaGCATTCATCAAGCTATCCT | + |
|
Preference number: 3 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSGFPQC*HSSSYP Trigger: AGGATAGCTTGATGAATGCAAGCATTGTGGGAAACC...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| 3UTR-3UTR CAA 90 bp | AACTTACATGGAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGACATTTAAAGGATCATaGCCCATTATGAGTTCTTCC | + |
|
Preference number: 3 (lower is better) Translates to: NLHGTSSYCPHLQNSFPVTFKGS*PIMSSS Trigger: GGAAGAACTCATAATGGGCAATGATCCTTTAAATGT...CACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTCCATGTAAGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | GCACCGACTCTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCAGAACTGGCGCAGCTaGAGGCCTTCCCGCACCGCT | + |
|
Preference number: 4 (lower is better) Translates to: APTLLPEVLSSIPSNHMVQNWRS*RPSRTA Trigger: AGCGGTGCGGGAAGGCCTTCAGCTGCGCCAGTTCTG...CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | GCACCGACTCTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGAGCTGGAAGCTGGGTaGAGACTTCCCTGCATGCAC | + |
|
Preference number: 4 (lower is better) Translates to: APTLLPEVLSSIPSNHMVELEAG*RLPCMH Trigger: GTGCATGCAGGGAAGTCTTCACCCAGCTTCCAGCTC...CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | GCACCGACTCTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACAAGCTGGGGTGGCTaGAAGCCTTCCCACACTCCT | + |
|
Preference number: 4 (lower is better) Translates to: APTLLPEVLSSIPSNHMVTSWGG*KPSHTP Trigger: AGGAGTGTGGGAAGGCTTTCAGCCACCCCAGCTTGT...CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR GCA 90 bp | GCACCGACTCTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCCAGGGAGAATATGCTaGTGTTTAAGAGCTGGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: APTLLPEVLSSIPSNHMVPGRIC*CLRAGS Trigger: GCTTCCAGCTCTTAAACAGCAGCATATTCTCCCTGG...CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR CCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTCGAAACAAGCTGGGGTaGCTGAAAGCCTTCCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: YFSKQESIFKGQWDNGRLRNKLG*LKAFPH Trigger: GTGTGGGAAGGCTTTCAGCCACCCCAGCTTGTTTCG...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR GCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTGAAGACTTCCCTGCATaGACTTTTCCATTCGCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: YFSKQESIFKGQWDNGRLEDFPA*TFPFAG Trigger: CCCCGCGAATGGAAAAGTGCATGCAGGGAAGTCTTC...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCATTCCCTCTGAATCCGTaGCTCTCCCACTGTGTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSFPLNP*LSHCVC Trigger: GCACACACAGTGGGAGAGTCACGGATTCAGAGGGAA...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTAGGTTTGGTAATATCTaGAGGTCTTCCCACACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: YFSKQESIFKGQWDNGRLRFGNI*RSSHTA Trigger: AGCAGTGTGGGAAGACCTTCAGATATTACCAAACCT...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | CAGTTCTATTTTGTTCACAGTATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCTGTGTGTGCTCACTATaGCACTGCATGTGCCTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: QFYFVHSISLSKRVSSKGCVCSL*HCMCLL Trigger: TAAGAGGCACATGCAGTGTCATAGTGAGCACACACA...GCCCTTTGAAGATACTCTCTTGCTTAGAGAAATACTGTGAACAAAATAGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | ATACAAGTTTGTGGTTTCCAGATAACTGAGCAACTGAGGACTTTTATACACTACCTCATGAATGTGAAATaGGCTGGGACAATCGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: IQVCGFQITEQLRTFIHYLMNVK*AGTIEG Trigger: GCCTTCGATTGTCCCAGCTCATTTCACATTCATGAG...GTAGTGTATAAAAGTCCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR GCA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTTTATCAACGGTTTCCTaGATCACATCTTGGTACAGT | + |
|
Preference number: 4 (lower is better) Translates to: YFSKQESIFKGQWDNGRLLSTVS*ITSWYS Trigger: ACTGTACCAAGATGTGATGCAGGAAACCGTTGATAA...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR CCA 90 bp | CAGTTCTATTTTGTTCACAGTATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCTTAAGAGCTGGAAGCTaGGTGAAGACTTCCCTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QFYFVHSISLSKRVSSKGLRAGS*VKTSLH Trigger: ATGCAGGGAAGTCTTCACCCAGCTTCCAGCTCTTAA...GCCCTTTGAAGATACTCTCTTGCTTAGAGAAATACTGTGAACAAAATAGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR CCA 90 bp | CAGTTCTATTTTGTTCACAGTATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCCTGCTGTTTAAGAGCTaGAAGCTGGGTGAAGACTTC | + |
|
Preference number: 4 (lower is better) Translates to: QFYFVHSISLSKRVSSKGLLFKS*KLGEDF Trigger: GAAGTCTTCACCCAGCTTCCAGCTCTTAAACAGCAG...GCCCTTTGAAGATACTCTCTTGCTTAGAGAAATACTGTGAACAAAATAGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR TCA 90 bp | GAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGGTTATCTTCAGGTCTCTGTTCTACATaGGCACTTATGTATTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: ELPHIVHTYRIPFQWLSSGLCST*ALMYFP Trigger: GGGAAAATACATAAGTGCTCATGTAGAACAGAGACC...TGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR GCA 90 bp | ATACAAGTTTGTGGTTTCCAGATAACTGAGCAACTGAGGACTTTTATACACTACACTCCAGGGAGAATATaGTGCTGTTTAAGAGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: IQVCGFQITEQLRTFIHYTPGRI*CCLRAG Trigger: TCCAGCTCTTAAACAGCAGCATATTCTCCCTGGAGT...GTAGTGTATAAAAGTCCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR CCA 90 bp | AACTTACATGGAACTTCCTCATATTGTCCACACTTACAGAATTCCTTTCCAGTGCCACAGTCCTTACACTaGTATAACTTCCCTCTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: NLHGTSSYCPHLQNSFPVPQSLH*YNFPLN Trigger: ATTCAGAGGGAAGTTATACCAGTGTAAGGACTGTGG...CACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTCCATGTAAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR GCA 90 bp | ATACAAGTTTGTGGTTTCCAGATAACTGAGCAACTGAGGACTTTTATACACTACCTAATGCTCTGGTCTTaGCAATTTTCCCCAATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IQVCGFQITEQLRTFIHYLMLWS*QFSPIE Trigger: TTCTATTGGGGAAAATTGGCAAGACCAGAGCATTAG...GTAGTGTATAAAAGTCCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR CAA 90 bp | TATTTCTCTAAGCAAGAGAGTATCTTCAAAGGGCAGTGGGACAATGGAAGGCTTCATCCTCATGTGTCCTaGATAAGTGGTGTGATAAAT | + |
|
Preference number: 5 (lower is better) Translates to: YFSKQESIFKGQWDNGRLHPHVS*ISGVIN Trigger: ATTTATCACACCACTTATCAAGGACACATGAGGATG...AAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS-3UTR CAA 90 bp | ATACAAGTTTGTGGTTTCCAGATAACTGAGCAACTGAGGACTTTTATACACTACCCTAATGCTCTGGTCTaGCCAATTTTCCCCAATAGA | + |
|
Preference number: 5 (lower is better) Translates to: IQVCGFQITEQLRTFIHYPNALV*PIFPNR Trigger: TCTATTGGGGAAAATTGGCAAGACCAGAGCATTAGG...GTAGTGTATAAAAGTCCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000178901.8 |
||
| CDS GCA 72 bp | CCGCATTCACAGGGCTTTACTCCAGGGAGAATATGCTaGTGTTTAAGAGCTGGAAGCTGGGTGAAGACTTCC | + |
|
Preference number: 6 (lower is better) Translates to: PHSQGFTPGRIC*CLRAGSWVKTS Trigger: GGAAGTCTTCACCCAGCTTCCAGCTCTTAAACAGCAGCATATTCTCCCTGGAGTAAAGCCCTGTGAATGCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000091508.5 ENSMUST00000178901.8 ENSMUST00000217301.2 |
||
| CDS CCA 72 bp | CCAGGGAGAATATGCTGCTGTTTAAGAGCTGGAAGCTaGGTGAAGACTTCCCTGCATGCACTTTTCCATTCG | + |
|
Preference number: 6 (lower is better) Translates to: PGRICCCLRAGS*VKTSLHALFHS Trigger: CGAATGGAAAAGTGCATGCAGGGAAGTCTTCACCCAGCTTCCAGCTCTTAAACAGCAGCATATTCTCCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000091508.5 ENSMUST00000178901.8 ENSMUST00000217301.2 |
||
| CDS TCA 72 bp | CTTTCCCACAGTCCTTACACTGGTATAACTTCCCTCTaGATCCGTGACTCTCCCACTGTGTGTGCTCACTAT | + |
|
Preference number: 6 (lower is better) Translates to: LSHSPYTGITSL*IRDSPTVCAHY Trigger: ATAGTGAGCACACACAGTGGGAGAGTCACGGATTCAGAGGGAAGTTATACCAGTGTAAGGACTGTGGGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000091508.5 ENSMUST00000178901.8 ENSMUST00000217301.2 |
||
| CDS GCA 72 bp | ATACCGCATTCACAGGGCTTTACTCCAGGGAGAATATaGTGCTGTTTAAGAGCTGGAAGCTGGGTGAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: IPHSQGFTPGRI*CCLRAGSWVKT Trigger: AGTCTTCACCCAGCTTCCAGCTCTTAAACAGCAGCATATTCTCCCTGGAGTAAAGCCCTGTGAATGCGGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000091508.5 ENSMUST00000178901.8 ENSMUST00000217301.2 |
||