RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP758 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044501

Ensembl transcript IDs: ENSMUST00000072477.11, ENSMUST00000088765.9, ENSMUST00000121315.2, ENSMUST00000149699.8

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACACTTAGACCTGAGATTTaGGTAAAGACATGTCCTCAT +
Preference number: 2 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATLRPEI*VKTCPH
Trigger: ATGAGGACATGTCTTTACCCAAATCTCAGGTCTAAG...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR-3UTR TCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACAATCTTCCTTGGTACATaGTTTGTCTCATTCACTTCA +
Preference number: 2 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATIFLGT*FVSFTS
Trigger: TGAAGTGAATGAGACAAATCATGTACCAAGGAAGAT...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR-3UTR CCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACTTAGACCTGAGATTTaGGTAAAGACATGTCCTCAT +
Preference number: 2 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLLRPEI*VKTCPH
Trigger: ATGAGGACATGTCTTTACCCAAATCTCAGGTCTAAG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR-3UTR CCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACAATACCCCATTCTTCTaGCTTTCTCACTTTGCCTTC +
Preference number: 2 (lower is better)
Translates to: LISFSLQWIISVSRKLLHNTPFF*LSHFAF
Trigger: GAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATT...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR-3UTR TCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCATCTTCCTTGGTACATaGTTTGTCTCATTCACTTCA +
Preference number: 2 (lower is better)
Translates to: DISQESKICIFTTVVRCLIFLGT*FVSFTS
Trigger: TGAAGTGAATGAGACAAATCATGTACCAAGGAAGAT...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR-3UTR CCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACCTTAGACCTGAGATTTaGGTAAAGACATGTCCTCAT +
Preference number: 2 (lower is better)
Translates to: LISFSLQWIISVSRKLLHLRPEI*VKTCPH
Trigger: ATGAGGACATGTCTTTACCCAAATCTCAGGTCTAAG...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR-3UTR TCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACATCTTCCTTGGTACATaGTTTGTCTCATTCACTTCA +
Preference number: 2 (lower is better)
Translates to: LISFSLQWIISVSRKLLHIFLGT*FVSFTS
Trigger: TGAAGTGAATGAGACAAATCATGTACCAAGGAAGAT...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR GCA 72 bp GTTACACAATACCCCATTCTTCTGGCTTTCTCACTTTaGCTTCATTATGGAATATTTAGGAGAACTAGTAAA +
Preference number: 3 (lower is better)
Translates to: VTQYPILLAFSL*LHYGIFRRTSK
Trigger: TTTACTAGTTCTCCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTGTAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR TCA 72 bp TCTCTGATGAGCTCTAAGATGATCTTCCTTGGTACATaGTTTGTCTCATTCACTTCATTTGTAAAATTTCTC +
Preference number: 3 (lower is better)
Translates to: SLMSSKMIFLGT*FVSFTSFVKFL
Trigger: GAGAAATTTTACAAATGAAGTGAATGAGACAAATCATGTACCAAGGAAGATCATCTTAGAGCTCATCAGAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
3UTR CCA 72 bp GGTTCACAATTTTCTCACGTTGATAATTATCTAGTGTaGAGCCTCAAGTATTGTAAAGAATACTGTTTGGAT +
Preference number: 3 (lower is better)
Translates to: GSQFSHVDNYLV*SLKYCKEYCLD
Trigger: ATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACACTAGATAATTATCAACGTGAGAAAATTGTGAACC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR GCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGGACCTTCCAGGGCTaGGCTGCTGACTCTCCCAGG +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLGTFQG*AADSPR
Trigger: CCTGGGAGAGTCAGCAGCGCAGCCCTGGAAGGTCCC...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACACCACTGCCACATCCTTaGATGTTAACAGACCCTGGG +
Preference number: 4 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATPLPHP*MLTDPG
Trigger: CCCAGGGTCTGTTAACATTCAAGGATGTGGCAGTGG...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACCACTGCCACATCCTTaGATGTTAACAGACCCTGGG +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLPLPHP*MLTDPG
Trigger: CCCAGGGTCTGTTAACATTCAAGGATGTGGCAGTGG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCGTTTCCGAAGGAAACTaGGGCCGAAAAACCAGCGCT +
Preference number: 4 (lower is better)
Translates to: DISQESKICIFTTVVRCLVSEGN*GRKTSA
Trigger: AGCGCTGGTTTTTCGGCCCCAGTTTCCTTCGGAAAC...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGATTTGCAGGGTTCTCTaGTGTTTCCAGTTTCATGTC +
Preference number: 4 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRICRVL*CFQFHV
Trigger: GACATGAAACTGGAAACACCAGAGAACCCTGCAAAT...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACAGACTGGATTCATATATaGTTTTGGCAAGTTCATGAC +
Preference number: 4 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATDWIHI*FWQVHD
Trigger: GTCATGAACTTGCCAAAATCATATATGAATCCAGTC...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACAATGTCTGTTGAGGTTTaGCGATTCAATAGATGTATC +
Preference number: 4 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATMSVEV*RFNRCI
Trigger: GATACATCTATTGAATCGTCAAACCTCAACAGACAT...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGGATCACCTTTCTGGATaGAGCATTTGTCATATTCAC +
Preference number: 4 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRDHLSG*SICHIH
Trigger: GTGAATATGACAAATGCTTCATCCAGAAAGGTGATC...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCATTTGCAGGGTTCTCTaGTGTTTCCAGTTTCATGTC +
Preference number: 4 (lower is better)
Translates to: DISQESKICIFTTVVRCLICRVL*CFQFHV
Trigger: GACATGAAACTGGAAACACCAGAGAACCCTGCAAAT...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACACTAAGACTTCCTTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATLRLPL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAAGGAAGTCTTAG...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGATCACCTTTCTGGATaGAGCATTTGTCATATTCAC +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLDHLSG*SICHIH
Trigger: GTGAATATGACAAATGCTTCATCCAGAAAGGTGATC...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACATTTGCAGGGTTCTCTaGTGTTTCCAGTTTCATGTC +
Preference number: 4 (lower is better)
Translates to: LISFSLQWIISVSRKLLHICRVL*CFQFHV
Trigger: GACATGAAACTGGAAACACCAGAGAACCCTGCAAAT...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACACTAAGATCACCTTTCTaGATGAAGCATTTGTCATAT +
Preference number: 4 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATLRSPF*MKHLSY
Trigger: ATATGACAAATGCTTCATCCAGAAAGGTGATCTTAG...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACACTAAGACTACATTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATLRLHL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAATGTAGTCTTAG...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGACTGGATTCATATATaGTTTTGGCAAGTTCATGAC +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLDWIHI*FWQVHD
Trigger: GTCATGAACTTGCCAAAATCATATATGAATCCAGTC...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCGACTGGATTCATATATaGTTTTGGCAAGTTCATGAC +
Preference number: 4 (lower is better)
Translates to: DISQESKICIFTTVVRCLDWIHI*FWQVHD
Trigger: GTCATGAACTTGCCAAAATCATATATGAATCCAGTC...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACGATCACCTTTCTGGATaGAGCATTTGTCATATTCAC +
Preference number: 4 (lower is better)
Translates to: LISFSLQWIISVSRKLLHDHLSG*SICHIH
Trigger: GTGAATATGACAAATGCTTCATCCAGAAAGGTGATC...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR GCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACACAGTTTTTATATTTaGAGGGTTCTCTGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLHSFYI*RVLWCF
Trigger: GAAACACCAGAGAACCCTGCAAATATAAAAACTGTG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR GCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCCACAGTTTTTATATTTaGAGGGTTCTCTGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: DISQESKICIFTTVVRCLHSFYI*RVLWCF
Trigger: GAAACACCAGAGAACCCTGCAAATATAAAAACTGTG...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGCTAAGATCACCTTTCTaGATGAAGCATTTGTCATAT +
Preference number: 4 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRLRSPF*MKHLSY
Trigger: ATATGACAAATGCTTCATCCAGAAAGGTGATCTTAG...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCCTAAGACTTCCTTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: DISQESKICIFTTVVRCLLRLPL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAAGGAAGTCTTAG...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGCTAAGACTGAATTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRLRLNL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAATTCAGTCTTAG...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGCTAAGACTACATTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRLRLHL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAATGTAGTCTTAG...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR TCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACATGTCTGTTGAGGTTTaGCGATTCAATAGATGTATC +
Preference number: 4 (lower is better)
Translates to: LISFSLQWIISVSRKLLHMSVEV*RFNRCI
Trigger: GATACATCTATTGAATCGTCAAACCTCAACAGACAT...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR GCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACCACAGTTTTTATATTTaGAGGGTTCTCTGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: LISFSLQWIISVSRKLLHHSFYI*RVLWCF
Trigger: GAAACACCAGAGAACCCTGCAAATATAAAAACTGTG...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR GCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTATTTAAGTTTTGCTCTTaGATGAATCCCCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLFKFCS*MNPLMN
Trigger: ATTCATCAGGGGATTCATGCAAGAGCAAAACTTAAA...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR GCA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCTTTAAGTTTTGCTCTTaGATGAATCCCCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: DISQESKICIFTTVVRCLFKFCS*MNPLMN
Trigger: ATTCATCAGGGGATTCATGCAAGAGCAAAACTTAAA...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACCTAAGACTTCCTTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: LISFSLQWIISVSRKLLHLRLPL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAAGGAAGTCTTAG...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACTAAGACTGAATTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLLRLNL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAATTCAGTCTTAG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CCA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACTAAGACTACATTTGTaGGTAAAGCATTTGTCACAT +
Preference number: 4 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLLRLHL*VKHLSH
Trigger: ATGTGACAAATGCTTTACCCACAAATGTAGTCTTAG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS TCA 90 bp TTTGCAGGGTTCTCTGGTGTTTCCAGTTTCATGTCTGTTGAGGTTTaGCGATTCAATAGATGTATCCCTGAGGTTAGTTTTATAAGGTGT +
Preference number: 5 (lower is better)
Translates to: FAGFSGVSSFMSVEV*RFNRCIPEVSFIRC
Trigger: ACACCTTATAAAACTAACCTCAGGGATACATCTATTGAATCGTCAAACCTCAACAGACATGAAACTGGAAACACCAGAGAACCCTGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072477.11
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACACCAGTTTCATGTCTGTaGAGGTTTGACGATTCAATA +
Preference number: 5 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATPVSCL*RFDDSI
Trigger: TATTGAATCGTCAAACCTCAACAGACATGAAACTGG...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp GTGTGGAGCCTCAAGTATTGTAAAGAATACTGTTTGGATAAAGCACATGCCACATGTTTCTTTCTGCTTTaGGTTTGTTTCAGCATGAGG +
Preference number: 5 (lower is better)
Translates to: VWSLKYCKEYCLDKAHATCFFLL*VCFSMR
Trigger: CCTCATGCTGAAACAAACCAAAAGCAGAAAGAAACA...TGTGGCATGTGCTTTATCCAAACAGTATTCTTTACAATACTTGAGGCTCCACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGTTGTCGGTAAAGCATTaGGCACATTCAGCACATTTG +
Preference number: 5 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRLSVKH*AHSAHL
Trigger: CAAATGTGCTGAATGTGCCAAATGCTTTACCGACAA...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGCCAGTTTCATGTCTGTaGAGGTTTGACGATTCAATA +
Preference number: 5 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRPVSCL*RFDDSI
Trigger: TATTGAATCGTCAAACCTCAACAGACATGAAACTGG...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGCTTTCTGCTTTTGGTTaGTTTCAGCATGAGGTTTTG +
Preference number: 5 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRLSAFG*FQHEVL
Trigger: CAAAACCTCATGCTGAAACAAACCAAAAGCAGAAAG...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTATTGTCGGTAAAGCATTaGGCACATTCAGCACATTTG +
Preference number: 5 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLLSVKH*AHSAHL
Trigger: CAAATGTGCTGAATGTGCCAAATGCTTTACCGACAA...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACCAGTTTCATGTCTGTaGAGGTTTGACGATTCAATA +
Preference number: 5 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLPVSCL*RFDDSI
Trigger: TATTGAATCGTCAAACCTCAACAGACATGAAACTGG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGACACAGTTTTTATATTaGCAGGGTTCTCTGGTGTTT +
Preference number: 5 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRTQFLY*QGSLVF
Trigger: AAACACCAGAGAACCCTGCAAATATAAAAACTGTGT...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTACTTTCTGCTTTTGGTTaGTTTCAGCATGAGGTTTTG +
Preference number: 5 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLLSAFG*FQHEVL
Trigger: CAAAACCTCATGCTGAAACAAACCAAAAGCAGAAAG...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTATGTTTCTTTCTGCTTTaGGTTTGTTTCAGCATGAGG +
Preference number: 5 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLCFFLL*VCFSMR
Trigger: CCTCATGCTGAAACAAACCAAAAGCAGAAAGAAACA...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTAGGCTAAGATCACTTTTGTaGGTAAAGCATTTGTCACAC +
Preference number: 5 (lower is better)
Translates to: QYPILLAFSLCLHYGIFRLRSLL*VKHLSH
Trigger: GTGTGACAAATGCTTTACCAACAAAAGTGATCTTAG...CCTAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCACACAGTTTTTATATTaGCAGGGTTCTCTGGTGTTT +
Preference number: 5 (lower is better)
Translates to: DISQESKICIFTTVVRCLTQFLY*QGSLVF
Trigger: AAACACCAGAGAACCCTGCAAATATAAAAACTGTGT...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACTGTTTCTTTCTGCTTTaGGTTTGTTTCAGCATGAGG +
Preference number: 5 (lower is better)
Translates to: LISFSLQWIISVSRKLLHCFFLL*VCFSMR
Trigger: CCTCATGCTGAAACAAACCAAAAGCAGAAAGAAACA...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp GACATCAGCCAAGAGTCAAAGATTTGTATTTTCACTACAGTTGTAAGATGTCTCTTGTTGGTAAAGCATTaGTCACACTCACTACATTTG +
Preference number: 5 (lower is better)
Translates to: DISQESKICIFTTVVRCLLLVKH*SHSLHL
Trigger: CAAATGTAGTGAGTGTGACAAATGCTTTACCAACAA...GAGACATCTTACAACTGTAGTGAAAATACAAATCTTTGACTCTTGGCTGATGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp CACAATACCCCATTCTTCTGGCTTTCTCACTTTGCCTTCATTATGGAATATTTATTGTTGGTAAAGCATTaGTCACACTCACTACATTTG +
Preference number: 5 (lower is better)
Translates to: HNTPFFWLSHFAFIMEYLLLVKH*SHSLHL
Trigger: CAAATGTAGTGAGTGTGACAAATGCTTTACCAACAA...TAAATATTCCATAATGAAGGCAAAGTGAGAAAGCCAGAAGAATGGGGTATTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACTTGTTGGTAAAGCATTaGTCACACTCACTACATTTG +
Preference number: 5 (lower is better)
Translates to: LISFSLQWIISVSRKLLHLLVKH*SHSLHL
Trigger: CAAATGTAGTGAGTGTGACAAATGCTTTACCAACAA...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS-3UTR CAA 90 bp TTAATCAGTTTCTCTTTGCAATGGATTATTTCAGTCTCCAGGAAACTGTTACACCTAAGATCACTTTTGTaGGTAAAGCATTTGTCACAC +
Preference number: 5 (lower is better)
Translates to: LISFSLQWIISVSRKLLHLRSLL*VKHLSH
Trigger: GTGTGACAAATGCTTTACCAACAAAAGTGATCTTAG...GTGTAACAGTTTCCTGGAGACTGAAATAATCCATTGCAAAGAGAAACTGATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS TCA 72 bp GTTAACAGACCCTGGGACCTTCCAGGGCTGCGCTGCTaGCTCTCCCAGGTCCGCAGCCACAAAACAGAGTCT +
Preference number: 6 (lower is better)
Translates to: VNRPWDLPGLRC*LSQVRSHKTES
Trigger: AGACTCTGTTTTGTGGCTGCGGACCTGGGAGAGTCAGCAGCGCAGCCCTGGAAGGTCCCAGGGTCTGTTAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149699.8
CDS TCA 72 bp CTGACTCTCCCAGGTCCGCAGCCACAAAACAGAGTCTaGGGAGCTTTCCGGTTTCCGAAGGAAACTGGGGCC +
Preference number: 6 (lower is better)
Translates to: LTLPGPQPQNRV*GAFRFPKETGA
Trigger: GGCCCCAGTTTCCTTCGGAAACCGGAAAGCTCCTCAGACTCTGTTTTGTGGCTGCGGACCTGGGAGAGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149699.8
CDS CAA 72 bp TTGCAGGGTTCTCTGGTGTTTCCAGTTTCATGTCTGTaGAGGTTTGACGATTCAATAGATGTATCCCTGAGG +
Preference number: 6 (lower is better)
Translates to: LQGSLVFPVSCL*RFDDSIDVSLR
Trigger: CCTCAGGGATACATCTATTGAATCGTCAAACCTCAACAGACATGAAACTGGAAACACCAGAGAACCCTGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072477.11
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS TCA 72 bp TTCTCTGGTGTTTCCAGTTTCATGTCTGTTGAGGTTTaGCGATTCAATAGATGTATCCCTGAGGTTAGTTTT +
Preference number: 6 (lower is better)
Translates to: FSGVSSFMSVEV*RFNRCIPEVSF
Trigger: AAAACTAACCTCAGGGATACATCTATTGAATCGTCAAACCTCAACAGACATGAAACTGGAAACACCAGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072477.11
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS CAA 90 bp TTTTTATATTTGCAGGGTTCTCTGGTGTTTCCAGTTTCATGTCTGTaGAGGTTTGACGATTCAATAGATGTATCCCTGAGGTTAGTTTTA +
Preference number: 6 (lower is better)
Translates to: FLYLQGSLVFPVSCL*RFDDSIDVSLRLVL
Trigger: TAAAACTAACCTCAGGGATACATCTATTGAATCGTCAAACCTCAACAGACATGAAACTGGAAACACCAGAGAACCCTGCAAATATAAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072477.11
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS TCA 72 bp AATGTCTCATCATCTTTCTTTCCGATGTGGATTCCTTaGTTTAGACCAATGCTAGAACACAAATTTAAACAG +
Preference number: 6 (lower is better)
Translates to: NVSSSFFPMWIP*FRPMLEHKFKQ
Trigger: CTGTTTAAATTTGTGTTCTAGCATTGGTCTAAATCAAGGAATCCACATCGGAAAGAAAGATGATGAGACATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072477.11
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8
CDS CAA 72 bp AGATGTATCCCTGAGGTTAGTTTTATAAGGTGTACTTaGACTGGATTCATATATGATTTTGGCAAGTTCATG +
Preference number: 6 (lower is better)
Translates to: RCIPEVSFIRCT*TGFIYDFGKFM
Trigger: CATGAACTTGCCAAAATCATATATGAATCCAGTCAAAGTACACCTTATAAAACTAACCTCAGGGATACATCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072477.11
ENSMUST00000088765.9
ENSMUST00000121315.2
ENSMUST00000149699.8