RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP710 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048897

Ensembl transcript IDs: ENSMUST00000049680.10, ENSMUST00000164056.9, ENSMUST00000166250.8, ENSMUST00000206039.2

Found 486 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTaGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGCCTGCTAT +
Preference number: 1 (lower is better)
Translates to: GSSLVLGCRGAALSM*VSPCALPAHSAACY
Trigger: ATAGCAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR GCA 90 bp GGCTGGAGCTGTGCCAGGACCACCTCCAGCTCCAACTGTGTACTGTaGTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAG +
Preference number: 1 (lower is better)
Translates to: GWSCARTTSSSNCVL*CAFLSALPGTRRGQ
Trigger: CTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCCTGGCACAGCTCCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR GCA 90 bp ACTGGAGAGGGCCGGGTAGGTTCTCTGCCTCCCCCACTTCCCTCCTaGCTTAGCCTTCTGAGGCTCCCAGCTAGTGATACACCTGGGCCA +
Preference number: 1 (lower is better)
Translates to: TGEGRVGSLPPPLPS*LSLLRLPASDTPGP
Trigger: TGGCCCAGGTGTATCACTAGCTGGGAGCCTCAGAAGGCTAAGGCAGGAGGGAAGTGGGGGAGGCAGAGAACCTACCCGGCCCTCTCCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR TCA 90 bp AAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTaGGGTGGCTTGGGGAAGACCTCTAAGTCTGTGCCTGTAAGAGGC +
Preference number: 1 (lower is better)
Translates to: KAWLKHSLPGERLRA*GGLGKTSKSVPVRG
Trigger: GCCTCTTACAGGCACAGACTTAGAGGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR GCA 90 bp GGAGAACCAGATGCGGACCTCCTGGTTACCTTTCCCTCACCGGGATaGCTAGGCCTGTGGCCAGCTCCCTGCAAGGACAGTAGTAGAGTC +
Preference number: 1 (lower is better)
Translates to: GEPDADLLVTFPSPG*LGLWPAPCKDSSRV
Trigger: GACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGCATCTGGTTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR GCA 90 bp CCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTaGCCGGCACAAGGCGAGGGCAGGGGCTTTTTCAGTATGGCATCC +
Preference number: 1 (lower is better)
Translates to: PPAPTVYCAVPSSPL*PAQGEGRGFFSMAS
Trigger: GGATGCCATACTGAAAAAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR GCA 90 bp CCACCCAGGCCAGACTTCTCCCTTCTGTTCCAAGACCAAGGCCACTaGGTTGGCAGGAGAGGAGGAGGAGGAAGAGAAGAAGGAGGAGGT +
Preference number: 1 (lower is better)
Translates to: PPRPDFSLLFQDQGH*VGRRGGGGREEGGG
Trigger: ACCTCCTCCTTCTTCTCTTCCTCCTCCTCCTCTCCTGCCAACGCAGTGGCCTTGGTCTTGGAACAGAAGGGAGAAGTCTGGCCTGGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR CCA 90 bp GCGGACCTCCTGGTTACCTTTCCCTCACCGGGATGCCTAGGCCTGTaGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCCATTTGGTCT +
Preference number: 1 (lower is better)
Translates to: ADLLVTFPSPGCLGL*PAPCKDSSRVSIWS
Trigger: AGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR GCA 90 bp CTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTaGTTTCGGAAAGGGAGGCAGGAAGTACACACAGCACACAAGAAA +
Preference number: 1 (lower is better)
Translates to: LPASDTPGPGPLRHG*FRKGRQEVHTAHKK
Trigger: TTTCTTGTGTGCTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CCA 90 bp CAGGCCAGACTTCTCCCTTCTGTTCCAAGACCAAGGCCACTGCGTTaGCAGGAGAGGAGGAGGAGGAAGAGAAGAAGGAGGAGGTACAGG +
Preference number: 1 (lower is better)
Translates to: QARLLPSVPRPRPLR*QERRRRKRRRRRYR
Trigger: CCTGTACCTCCTCCTTCTTCTCTTCCTCCTCCTCCTCTCCTGCCAACGCAGTGGCCTTGGTCTTGGAACAGAAGGGAGAAGTCTGGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR TCA 90 bp GCTATAGCACATTGTAGTAGGCCATCTCTTTCATGGCCTGCTCAGTaGGGGTGCTGGCCTCCGCGCTGCTGTCCACACTGCTGTAGGTGT +
Preference number: 1 (lower is better)
Translates to: AIAHCSRPSLSWPAQ*GCWPPRCCPHCCRC
Trigger: ACACCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR GCA 90 bp GTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTaGAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAG +
Preference number: 1 (lower is better)
Translates to: VGQCRGSDVLKGQSR*RRETRPGSSILFLE
Trigger: CTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR GCA 90 bp TCCAAGAGTGGGAATATTTGGAAACAAGTCAGGGATGGCAGTGCATaGCCGAAATCCCAGCACTGGGGAGGCCGGAAATCTGAAAAGGCC +
Preference number: 1 (lower is better)
Translates to: SKSGNIWKQVRDGSA*PKSQHWGGRKSEKA
Trigger: GGCCTTTTCAGATTTCCGGCCTCCCCAGTGCTGGGATTTCGGGCATGCACTGCCATCCCTGACTTGTTTCCAAATATTCCCACTCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 90 bp ATGTTGCAGATCCAAGAGTGGGAATATTTGGAAACAAGTCAGGGATaGCAGTGCATGCCCGAAATCCCAGCACTGGGGAGGCCGGAAATC +
Preference number: 1 (lower is better)
Translates to: MLQIQEWEYLETSQG*QCMPEIPALGRPEI
Trigger: GATTTCCGGCCTCCCCAGTGCTGGGATTTCGGGCATGCACTGCCATCCCTGACTTGTTTCCAAATATTCCCACTCTTGGATCTGCAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 90 bp ACACACATACGTGTAGTCTTGCTTCAGGAAGCTGAGACAGGAAGATaGTTGCGTTCTAGGCCAGACACAGGTAGACAGTGTGAGCCTGCT +
Preference number: 1 (lower is better)
Translates to: THIRVVLLQEAETGR*LRSRPDTGRQCEPA
Trigger: AGCAGGCTCACACTGTCTACCTGTGTCTGGCCTAGAACGCAACCATCTTCCTGTCTCAGCTTCCTGAAGCAAGACTACACGTATGTGTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 90 bp ACAATACCCTTCTTGCTGCAAACAGAATTTTCCCCTCCCTCTCTCTaGTCTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAG +
Preference number: 1 (lower is better)
Translates to: TIPFLLQTEFSPPSL*SSVKHVALPPEPAE
Trigger: CTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAGACCAGAGAGAGGGAGGGGAAAATTCTGTTTGCAGCAAGAAGGGTATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR TCA 90 bp TCAGACTCACCTGAAGGGGGTGTCAGATCTCATTACGGATGGTTGTaGGTCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTTGGA +
Preference number: 1 (lower is better)
Translates to: SDSPEGGVRSHYGWL*VTMWLLGFELRTFG
Trigger: TCCAAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCATCCGTAATGAGATCTGACACCCCCTTCAGGTGAGTCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR TCA 90 bp CCTGTTCCCATCCTTCAGGTTTCTCCTTTGGCACAACTAGAAAAGTaGTGTGGAAATGTTGTTCCAAAGCCCATATACACTCAATGGAAA +
Preference number: 1 (lower is better)
Translates to: PVPILQVSPLAQLEK*CGNVVPKPIYTQWK
Trigger: TTTCCATTGAGTGTATATGGGCTTTGGAACAACATTTCCACATCACTTTTCTAGTTGTGCCAAAGGAGAAACCTGAAGGATGGGAACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 90 bp CTGGAGATTAGGGTAACTTTGATAATGCAGTCAGTTCTCTGTATCTaGAGTTGGTTGTTGTCAGTGCTGGGAATTGAGTTTAGCAAGCAT +
Preference number: 1 (lower is better)
Translates to: LEIRVTLIMQSVLCI*SWLLSVLGIEFSKH
Trigger: ATGCTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCTAATCTCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 90 bp TCCACAGCCCTAGCCTCCAGTTTAAAGACTATTTTAGTATTTTTATaGGGTATCTTGCCTGTTTGTATATCTGTGTGCCATGTACATACA +
Preference number: 1 (lower is better)
Translates to: STALASSLKTILVFL*GILPVCISVCHVHT
Trigger: TGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCCATAAAAATACTAAAATAGTCTTTAAACTGGAGGCTAGGGCTGTGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 90 bp ATTAGGGTAACTTTGATAATGCAGTCAGTTCTCTGTATCTGGAGTTaGTTGTTGTCAGTGCTGGGAATTGAGTTTAGCAAGCATTTTATC +
Preference number: 1 (lower is better)
Translates to: IRVTLIMQSVLCIWS*LLSVLGIEFSKHFI
Trigger: GATAAAATGCTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGGGCCAGCTGGGAGGGTaGTCTGGAGGCTGGACTCCC +
Preference number: 2 (lower is better)
Translates to: EGALEAGLPSALRQAGPGGQLGG*SGGWTP
Trigger: GGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCC...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR TCA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAGAGCGCCTCCGCGCCTaGGGTGGCTTGGGGAAGACC +
Preference number: 2 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSERLRA*GGLGKT
Trigger: GGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTC...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR TCA 90 bp TTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACACCTGCTTGGAGCGCCTCCGCGCCTaGGGTGGCTTGGGGAAGACC +
Preference number: 2 (lower is better)
Translates to: FLRSRLSHSSPTPHDTCLERLRA*GGLGKT
Trigger: GGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTC...CAAGCAGGTGTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR TCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGAGAGGTTCTTGGGTCTaGCCAGGGTGGGGGTGGGCA +
Preference number: 2 (lower is better)
Translates to: EGALEAGLPSALRQAGPGRGSWV*PGWGWA
Trigger: TGCCCACCCCCACCCTGGTCAGACCCAAGAACCTCT...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCAATGTGGGTCTCACCCTaGGCCCTCCCCGCCCACTCA +
Preference number: 2 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAMWVSP*ALPAHS
Trigger: TGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACAT...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGGCAGTAGCTTGGTTCTaGGCTGCAGAGGGGCAGCCC +
Preference number: 2 (lower is better)
Translates to: EGALEAGLPSALRQAGPGAVAWF*AAEGQP
Trigger: GGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGC...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR TCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCTCCTCCGGAGCCGGCTaGGCCACAGCTCACCCACTC +
Preference number: 2 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFSSGAG*ATAHPL
Trigger: GAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGA...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGGCAGAGTGCCCTGCCTaGCTCTTGAGTGATAGGGGG +
Preference number: 2 (lower is better)
Translates to: EGALEAGLPSALRQAGPGAECPA*LLSDRG
Trigger: CCCCCTATCACTCAAGAGCCAGGCAGGGCACTCTGC...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCAGCATGCATGCCTGCATaGAGCAAGGGGAGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAACMPA*SKGRPR
Trigger: CCTGGGCCTCCCCTTGCTCCATGCAGGCATGCATGC...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp TCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCTGGGAGGGTGCTCTaGAGGCTGGACTCCCCTCAG +
Preference number: 2 (lower is better)
Translates to: SALRQAGPGLGPHACLHGAGRVL*RLDSPQ
Trigger: CTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGC...TCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp CTGTGCTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAGGGGCTTGGAGGCCGGGAGCCATaGGAAACCACACCTGGGCCA +
Preference number: 2 (lower is better)
Translates to: LCCAFLSALPGTRRGQGLGGREP*ETTPGP
Trigger: TGGCCCAGGTGTGGTTTCCCATGGCTCCCGGCCTCC...AAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR TCA 90 bp GGCCTTGGGATTTGTGGGCAGGGGTTTGGGTGCTTGCGAGCTTATGGATGGAGGGAGCGCCTCCGCGCCTaGGGTGGCTTGGGGAAGACC +
Preference number: 2 (lower is better)
Translates to: GLGICGQGFGCLRAYGWRERLRA*GGLGKT
Trigger: GGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTC...CCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp CTGTGCTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAGGGGCTTCCCCCACTTCCCTCCTaGCTTAGCCTTCTGAGGCTC +
Preference number: 2 (lower is better)
Translates to: LCCAFLSALPGTRRGQGLPPLPS*LSLLRL
Trigger: GAGCCTCAGAAGGCTAAGGCAGGAGGGAAGTGGGGG...AAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp GCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGATCTCTTTCATGGCCTaGTCAGTGAGGGTGCTGGCC +
Preference number: 2 (lower is better)
Translates to: ALEAGLPSALRQAGPGLGISFMA*SVRVLA
Trigger: GGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGAT...CCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAGCAGAGTGCCCTGCCTaGCTCTTGAGTGATAGGGGG +
Preference number: 2 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSAECPA*LLSDRG
Trigger: CCCCCTATCACTCAAGAGCCAGGCAGGGCACTCTGC...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACGCATGCATGCCTGCATaGAGCAAGGGGAGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDACMPA*SKGRPR
Trigger: CCTGGGCCTCCCCTTGCTCCATGCAGGCATGCATGC...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGATGTGGGTCTCACCCTaGGCCCTCCCCGCCCACTCA +
Preference number: 2 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQMWVSP*ALPAHS
Trigger: TGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACAT...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCAGCTTGGTTCTGGGCTaGAGAGGGGCAGCCCTCAGT +
Preference number: 2 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFSLVLG*RGAALS
Trigger: ACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGGGCCGCATGCATGCCTaGATGGAGCAAGGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQGRMHA*MEQGEA
Trigger: GGCCTCCCCTTGCTCCATGCAGGCATGCATGCGGCC...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCCAGTGGGCAGTAGCTTaGTTCTGGGCTGCAGAGGGG +
Preference number: 2 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSQWAVA*FWAAEG
Trigger: CCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTG...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCAGGAGGGCCAGGCAGTaGGCAGTAGCTTGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSRRARQ*AVAWFW
Trigger: CCAGAACCAAGCTACTGCCCACTGCCTGGCCCTCCT...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACGCAGAGTGCCCTGCCTaGCTCTTGAGTGATAGGGGG +
Preference number: 2 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDAECPA*LLSDRG
Trigger: CCCCCTATCACTCAAGAGCCAGGCAGGGCACTCTGC...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp CTGTGCTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAGGGGCTTTCTTTCAAACGAGGCTaGGGCAGGGGAGCTCTGCAG +
Preference number: 2 (lower is better)
Translates to: LCCAFLSALPGTRRGQGLSFKRG*GRGALQ
Trigger: CTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGA...AAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCAGCTTGGTTCTGGGCTaGAGAGGGGCAGCCCTCAGT +
Preference number: 2 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCSLVLG*RGAALS
Trigger: ACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp GGCCTTGGGATTTGTGGGCAGGGGTTTGGGTGCTTGCGAGCTTATGGATGGAGGGGCCGCATGCATGCCTaGATGGAGCAAGGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: GLGICGQGFGCLRAYGWRGRMHA*MEQGEA
Trigger: GGCCTCCCCTTGCTCCATGCAGGCATGCATGCGGCC...CCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp AGGCAGTGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTTGCTGGCCTCCGCGCTaGTGTCCACACTGCTGTAGG +
Preference number: 2 (lower is better)
Translates to: RQWAVAWFWAAEGQPSVCCWPPR*CPHCCR
Trigger: CCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCA...ACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGGCAGTAGCTTGGTTCTaGGCTGCAGAGGGGCAGCCC +
Preference number: 2 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQAVAWF*AAEGQP
Trigger: GGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGC...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GGACCACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTGCGGGTGCTCTGGAGGCTaGACTCCCCTCAGCTCTCCG +
Preference number: 2 (lower is better)
Translates to: GPPPAPTVYCAVPSSPLCGCSGG*TPLSSP
Trigger: CGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCC...GCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR CCA 90 bp CTGTGCTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAGGGGCTTTTGTGGGCAGGGGTTTaGGTGCTTGCGAGCTTATGG +
Preference number: 2 (lower is better)
Translates to: LCCAFLSALPGTRRGQGLLWAGV*VLASLW
Trigger: CCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAA...AAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR TCA 90 bp GGACCACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTGCAGAGGTTCTTGGGTCTaGCCAGGGTGGGGGTGGGCA +
Preference number: 2 (lower is better)
Translates to: GPPPAPTVYCAVPSSPLCRGSWV*PGWGWA
Trigger: TGCCCACCCCCACCCTGGTCAGACCCAAGAACCTCT...GCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR TCA 90 bp GGCCTTGGGATTTGTGGGCAGGGGTTTGGGTGCTTGCGAGCTTATGGATGGAGGGCCCTGCCTGGCTCTTaGGTGATAGGGGGAGGGAAG +
Preference number: 2 (lower is better)
Translates to: GLGICGQGFGCLRAYGWRALPGS*VIGGGK
Trigger: CTTCCCTCCCCCTATCACTCAAGAGCCAGGCAGGGC...CCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGCCCCCACTTCCCTCCTaGCTTAGCCTTCTGAGGCTC +
Preference number: 2 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQPPLPS*LSLLRL
Trigger: GAGCCTCAGAAGGCTAAGGCAGGAGGGAAGTGGGGG...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGACGGGTGGTCTTCCTTaGCTTCCCCTGAGGACAGCC +
Preference number: 2 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQTGGLP*LPLRTA
Trigger: GGCTGTCCTCAGGGGAAGCCAAGGAAGACCACCCGT...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp TCCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCAAAGGCCAGAGTCGGTaGAGAAGAGAGACAAGGCCT +
Preference number: 2 (lower is better)
Translates to: SPEDSHSWSQRCHPDPPSKGQSR*RRETRP
Trigger: AGGCCTTGTCTCTCTTCTGCACCGACTCTGGCCTTT...GGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCGCTGGGAGGGTGCTCTaGAGGCTGGACTCCCCTCAG +
Preference number: 2 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPAGRVL*RLDSPQ
Trigger: CTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGC...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp CAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGTCTTTCAAACGAGGCTaGGGCAGGGGAGCTCTGCAG +
Preference number: 2 (lower is better)
Translates to: QLVIHLGQGPSGMAAFGKSFKRG*GRGALQ
Trigger: CTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGA...CTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CAA 90 bp ACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTaGCCCGGCACAAGGCGAGGGCAGGGGCTTTTTCAGTATGGCATC +
Preference number: 2 (lower is better)
Translates to: TSSSNCVLCCAFLSA*PGTRRGQGLFQYGI
Trigger: GATGCCATACTGAAAAAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR TCA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAAGTCCTCCATCTCCTaGTGGTTGTCAAGTTCAGAG +
Preference number: 2 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSKSSIS*WLSSSE
Trigger: CTCTGAACTTGACAACCATCAGGAGATGGAGGACTT...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp AGGCCTGGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGCCAAGGAGAACCAGATaGGGACCTCCTGGTTACCTT +
Preference number: 2 (lower is better)
Translates to: RPGLGAVTLRINTLCLSWPRRTR*GPPGYL
Trigger: AAGGTAACCAGGAGGTCCGCATCTGGTTCTCCTTGG...CCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGCCAAGGAGAACCAGATaGGGACCTCCTGGTTACCTT +
Preference number: 2 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLPRRTR*GPPGYL
Trigger: AAGGTAACCAGGAGGTCCGCATCTGGTTCTCCTTGG...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp CCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCTTAATGCTTGCCAGATaGAGGGCATGTCCTGGGTTT +
Preference number: 2 (lower is better)
Translates to: PLRTATLGPRDVTPTLPPLMLAR*RACPGF
Trigger: AAACCCAGGACATGCCCTGCATCTGGCAAGCATTAA...GGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp TCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCATCATCTTTGTTAATGCTTaGCAGATGCAGGGCATGTCC +
Preference number: 2 (lower is better)
Translates to: SQRCHPDPPSPLAQGAAIIFVNA*QMQGMS
Trigger: GGACATGCCCTGCATCTGGCAAGCATTAACAAAGAT...GATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp CCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTGGTTACGCTGCTGTCCACACTaGTGTAGGTGTAGGCGTTTT +
Preference number: 2 (lower is better)
Translates to: PAHAQQQAKENQMRTSWLRCCPH*CRCRRF
Trigger: AAAACGCCTACACCTACAGCAGTGTGGACAGCAGCG...TAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR CAA 90 bp CCAGGCCAGACTTCTCCCTTCTGTTCCAAGACCAAGGCCACTGCGTaGGCAGGAGAGGAGGAGGAGGAAGAGAAGAAGGAGGAGGTACAG +
Preference number: 2 (lower is better)
Translates to: PGQTSPFCSKTKATA*AGEEEEEEKKEEVQ
Trigger: CTGTACCTCCTCCTTCTTCTCTTCCTCCTCCTCCTCTCCTGCCAACGCAGTGGCCTTGGTCTTGGAACAGAAGGGAGAAGTCTGGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR CCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCCAGTGGGCAGTAGCTTaGTTCTGGGCTGCAGAGGGG +
Preference number: 2 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPQWAVA*FWAAEG
Trigger: CCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTG...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGACAAGCATTCTCTTCCTaGAGAGCGCCTCCGCGCCTG +
Preference number: 2 (lower is better)
Translates to: ASAGVQMSLKARVGAEERQAFSS*RAPPRL
Trigger: CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTG...TCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCAAGAGAGACAAGGCCTaGCTCAAGCATTCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFKRDKA*LKHSLP
Trigger: AGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTT...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp AGGCCTGGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGAAGAGAGACAAGGCCTaGCTCAAGCATTCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: RPGLGAVTLRINTLCLSWKRDKA*LKHSLP
Trigger: AGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTT...CCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR TCA 90 bp CAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGAGCACACAAGAAAGCTaGGGCTTGGACGAACCAAAA +
Preference number: 2 (lower is better)
Translates to: QLVIHLGQGPSGMAAFGKSTQES*GLDEPK
Trigger: TTTTGGTTCGTCCAAGCCTCAGCTTTCTTGTGTGCT...CTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp GGGGTATCTTGCCTGTTTGTATATCTGTGTGCCATGTACATACAGGGTCCACTGATGTGGGTCTCACCCTaGGCCCTCCCCGCCCACTCA +
Preference number: 2 (lower is better)
Translates to: GVSCLFVYLCAMYIQGPLMWVSP*ALPAHS
Trigger: TGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACAT...CAGTGGACCCTGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGAAGAGAGACAAGGCCTaGCTCAAGCATTCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQKRDKA*LKHSLP
Trigger: AGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTT...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GGGGTATCTTGCCTGTTTGTATATCTGTGTGCCATGTACATACAGGGTCCACTGGTGCCAATGGCAGGCTaGGGGACAGTGGGAGACCCC +
Preference number: 2 (lower is better)
Translates to: GVSCLFVYLCAMYIQGPLVPMAG*GTVGDP
Trigger: GGGGTCTCCCACTGTCCCCCAGCCTGCCATTGGCAC...CAGTGGACCCTGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CAA 90 bp AAACAGAATTTTCCCCTCCCTCTCTCTGGTCTTCAGTTAAACATGTaGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCC +
Preference number: 2 (lower is better)
Translates to: KQNFPLPLSGLQLNM*LFLRSRLSHSSPTP
Trigger: GGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAGACCAGAGAGAGGGAGGGGAAAATTCTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp AGTCAGAAGAGGGCATTGGAGACCCTAGAACTAGAGTTAGAGACAGTTGCTGAGGCATGCATGCCTGCATaGAGCAAGGGGAGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: SQKRALETLELELETVAEACMPA*SKGRPR
Trigger: CCTGGGCCTCCCCTTGCTCCATGCAGGCATGCATGC...CTCAGCAACTGTCTCTAACTCTAGTTCTAGGGTCTCCAATGCCCTCTTCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp GGGGTATCTTGCCTGTTTGTATATCTGTGTGCCATGTACATACAGGGTCCACTGCTAGGGCCGCATGCATaGCTGCATGGAGCAAGGGGA +
Preference number: 2 (lower is better)
Translates to: GVSCLFVYLCAMYIQGPLLGPHA*LHGARG
Trigger: TCCCCTTGCTCCATGCAGGCATGCATGCGGCCCTAG...CAGTGGACCCTGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CCA 90 bp GGGGTATCTTGCCTGTTTGTATATCTGTGTGCCATGTACATACAGGGTCCACTGACGGGTGGTCTTCCTTaGCTTCCCCTGAGGACAGCC +
Preference number: 2 (lower is better)
Translates to: GVSCLFVYLCAMYIQGPLTGGLP*LPLRTA
Trigger: GGCTGTCCTCAGGGGAAGCCAAGGAAGACCACCCGT...CAGTGGACCCTGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CCA 90 bp GGCCTTGGGATTTGTGGGCAGGGGTTTGGGTGCTTGCGAGCTTATGGATGGAGGTCCCCTCCCTCTCTCTaGTCTTCAGTTAAACATGTT +
Preference number: 2 (lower is better)
Translates to: GLGICGQGFGCLRAYGWRSPPSL*SSVKHV
Trigger: AACATGTTTAACTGAAGACCAGAGAGAGGGAGGGGA...CCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCTTAATGCTTGCCAGATaGAGGGCATGTCCTGGGTTT +
Preference number: 2 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPLMLAR*RACPGF
Trigger: AAACCCAGGACATGCCCTGCATCTGGCAAGCATTAA...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GGACCACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTGCTTCAGCCAAAGCTGGTaGCTTCATCTATGCCTTTTT +
Preference number: 2 (lower is better)
Translates to: GPPPAPTVYCAVPSSPLCFSQSW*LHLCLF
Trigger: AAAAAGGCATAGATGAAGCCACCAGCTTTGGCTGAA...GCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR CAA 90 bp GGCCGGAAATCTGAAAAGGCCAGGTGTACACACATACGTGTAGTCTaGCTTCAGGAAGCTGAGACAGGAAGATGGTTGCGTTCTAGGCCA +
Preference number: 2 (lower is better)
Translates to: GRKSEKARCTHIRVV*LQEAETGRWLRSRP
Trigger: TGGCCTAGAACGCAACCATCTTCCTGTCTCAGCTTCCTGAAGCAAGACTACACGTATGTGTGTACACCTGGCCTTTTCAGATTTCCGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp ATGCACATTAGGGACATTCTTTCAAACGAGGCTGGGGCAGGGGAGCTCTGCAGGATCTTTGTTAATGCTTaGCAGATGCAGGGCATGTCC +
Preference number: 2 (lower is better)
Translates to: MHIRDILSNEAGAGELCRIFVNA*QMQGMS
Trigger: GGACATGCCCTGCATCTGGCAAGCATTAACAAAGAT...CCTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGAATGTCCCTAATGTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CCA 90 bp GTGACTTCTCTTTCTGCTTGTTTGGTCCTGCTGGAGATTAGGGTAACTTTGATAGGATGCCTAGGCCTGTaGCCAGCTCCCTGCAAGGAC +
Preference number: 2 (lower is better)
Translates to: VTSLSACLVLLEIRVTLIGCLGL*PAPCKD
Trigger: GTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCC...TATCAAAGTTACCCTAATCTCCAGCAGGACCAAACAAGCAGAAAGAGAAGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CAA 90 bp GATCTCATTACGGATGGTTGTGAGTCACCATGTGGTTGCTGGGATTaGAACTCAGAACCTTTGGAAGAGCAGTCGGTGCTCTTAACCTCT +
Preference number: 2 (lower is better)
Translates to: DLITDGCESPCGCWD*NSEPLEEQSVLLTS
Trigger: AGAGGTTAAGAGCACCGACTGCTCTTCCAAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCATCCGTAATGAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp CAGACCTGGATGAACTGTGTTGAAATGCACATTAGGGACATTCTTTCAAACGAGAAAGGCCAGAGTCGGTaGAGAAGAGAGACAAGGCCT +
Preference number: 2 (lower is better)
Translates to: QTWMNCVEMHIRDILSNEKGQSR*RRETRP
Trigger: AGGCCTTGTCTCTCTTCTGCACCGACTCTGGCCTTT...CTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR GCA 90 bp AGTCAGAAGAGGGCATTGGAGACCCTAGAACTAGAGTTAGAGACAGTTGCTGAGCAATACCCTTCTTGCTaGAAACAGAATTTTCCCCTC +
Preference number: 2 (lower is better)
Translates to: SQKRALETLELELETVAEQYPSC*KQNFPL
Trigger: GAGGGGAAAATTCTGTTTGCAGCAAGAAGGGTATTG...CTCAGCAACTGTCTCTAACTCTAGTTCTAGGGTCTCCAATGCCCTCTTCTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp CAAATTTCTATAGAATTAAGGATGACCTTGAACTTCTTAGCCTCCAGTCTCCACAAAGGCCAGAGTCGGTaGAGAAGAGAGACAAGGCCT +
Preference number: 2 (lower is better)
Translates to: QISIELRMTLNFLASSLHKGQSR*RRETRP
Trigger: AGGCCTTGTCTCTCTTCTGCACCGACTCTGGCCTTT...GTGGAGACTGGAGGCTAAGAAGTTCAAGGTCATCCTTAATTCTATAGAAATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR GCA 90 bp TGTGGAAATGTTGTTCCAAAGCCCATATACACTCAATGGAAAGCACTGTCGCTGGTTTGTATATCTGTGTaGCATGTACATACAGGGTCC +
Preference number: 2 (lower is better)
Translates to: CGNVVPKPIYTQWKALSLVCISV*HVHTGS
Trigger: GGACCCTGTATGTACATGGCACACAGATATACAAAC...CAGCGACAGTGCTTTCCATTGAGTGTATATGGGCTTTGGAACAACATTTCCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CAA 90 bp ACTTCTCTTTCTGCTTGTTTGGTCCTGCTGGAGATTAGGGTAACTTaGATAATGCAGTCAGTTCTCTGTATCTGGAGTTGGTTGTTGTCA +
Preference number: 2 (lower is better)
Translates to: TSLSACLVLLEIRVT*IMQSVLCIWSWLLS
Trigger: TGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCTAATCTCCAGCAGGACCAAACAAGCAGAAAGAGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CAA 90 bp AGGGTAACTTTGATAATGCAGTCAGTTCTCTGTATCTGGAGTTGGTaGTTGTCAGTGCTGGGAATTGAGTTTAGCAAGCATTTTATCAGT +
Preference number: 2 (lower is better)
Translates to: RVTLIMQSVLCIWSW*LSVLGIEFSKHFIS
Trigger: ACTGATAAAATGCTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CCA 90 bp CAAATTTCTATAGAATTAAGGATGACCTTGAACTTCTTAGCCTCCAGTCTCCACTTTTTCAGCCAAAGCTaGTGGCTTCATCTATGCCTT +
Preference number: 2 (lower is better)
Translates to: QISIELRMTLNFLASSLHFFSQS*WLHLCL
Trigger: AAGGCATAGATGAAGCCACCAGCTTTGGCTGAAAAA...GTGGAGACTGGAGGCTAAGAAGTTCAAGGTCATCCTTAATTCTATAGAAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CAA 90 bp GTAACTTTGATAATGCAGTCAGTTCTCTGTATCTGGAGTTGGTTGTaGTCAGTGCTGGGAATTGAGTTTAGCAAGCATTTTATCAGTAAG +
Preference number: 2 (lower is better)
Translates to: VTLIMQSVLCIWSWL*SVLGIEFSKHFISK
Trigger: CTTACTGATAAAATGCTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp AGCTCTGCAGGCCAGCTGGGAGGGTGCTCTGGAGGCTaGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGG +
Preference number: 3 (lower is better)
Translates to: SSAGQLGGCSGG*TPLSSPTGRAR
Trigger: CCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR GCA 72 bp CTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATaGCTGCATGGAGCAAGGGGAGGCCCAGGAGGTAGA +
Preference number: 3 (lower is better)
Translates to: LRQAGPGLGPHA*LHGARGGPGGR
Trigger: TCTACCTCCTGGGCCTCCCCTTGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CCA 72 bp TTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTaGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCG +
Preference number: 3 (lower is better)
Translates to: LVLGCRGAALSM*VSPCALPAHSA
Trigger: CGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp GCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGTGCCCTGCCTGGCTCTaGAGTGATAGGGGGAGGGAA +
Preference number: 3 (lower is better)
Translates to: ALEAGLPSALRQAGPGLGCPAWL*SDRGRE
Trigger: TTCCCTCCCCCTATCACTCAAGAGCCAGGCAGGGCA...CCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAGCAGTGGGCAGTAGCTaGGTTCTGGGCTGCAGAGGG +
Preference number: 3 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSAVGSS*VLGCRG
Trigger: CCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGC...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp TCCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCGCAGTGGGCAGTAGCTaGGTTCTGGGCTGCAGAGGG +
Preference number: 3 (lower is better)
Translates to: SPEDSHSWSQRCHPDPPSAVGSS*VLGCRG
Trigger: CCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGC...GGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGGCAGTGGGCAGTAGCTaGGTTCTGGGCTGCAGAGGG +
Preference number: 3 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLAVGSS*VLGCRG
Trigger: CCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGC...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR TCA 72 bp CCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCTaGGGACAGCCACTCTTGGTCCCAGAGATGTCACCC +
Preference number: 3 (lower is better)
Translates to: PLFPRVVFLGFP*GQPLLVPEMSP
Trigger: GGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR GCA 72 bp GATGCGGACCTCCTGGTTACCTTTCCCTCACCGGGATaGCTAGGCCTGTGGCCAGCTCCCTGCAAGGACAGT +
Preference number: 3 (lower is better)
Translates to: DADLLVTFPSPG*LGLWPAPCKDS
Trigger: ACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CCA 72 bp GAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTaGAGAGCGCCTCCGCGCCTGAGGTGGCTTGGGGAA +
Preference number: 3 (lower is better)
Translates to: EERQGLAQAFSS*RAPPRLRWLGE
Trigger: TTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp CTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCCACGGGTGGTCTTCCTaGGCTTCCCCTGAGGACAGC +
Preference number: 3 (lower is better)
Translates to: LQLNMLLFLRSRLSHSSPHGWSS*ASPEDS
Trigger: GCTGTCCTCAGGGGAAGCCAAGGAAGACCACCCGTG...GGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR TCA 72 bp CTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTaGGGTGGCTTGGGGAAGACCTCTAAGTCTGTGCCT +
Preference number: 3 (lower is better)
Translates to: LKHSLPGERLRA*GGLGKTSKSVP
Trigger: AGGCACAGACTTAGAGGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR TCA 72 bp CATTGTAGTAGGCCATCTCTTTCATGGCCTGCTCAGTaGGGGTGCTGGCCTCCGCGCTGCTGTCCACACTGC +
Preference number: 3 (lower is better)
Translates to: HCSRPSLSWPAQ*GCWPPRCCPHC
Trigger: GCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
3UTR GCA 72 bp CCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTaGCCGGCACAAGGCGAGGGCAGGGGCTTTTTCAGT +
Preference number: 3 (lower is better)
Translates to: PTVYCAVPSSPL*PAQGEGRGFFS
Trigger: ACTGAAAAAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR CCA 72 bp CTGGTTACCTTTCCCTCACCGGGATGCCTAGGCCTGTaGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCC +
Preference number: 3 (lower is better)
Translates to: LVTFPSPGCLGL*PAPCKDSSRVS
Trigger: GGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CCA 72 bp GGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTaGCTCAAGGAGCCGCCATCTATCTTTGTTAATGCT +
Preference number: 3 (lower is better)
Translates to: GPRDVTPTLPPR*LKEPPSIFVNA
Trigger: AGCATTAACAAAGATAGATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp CTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCTGCCCTGCCTGGCTCTaGAGTGATAGGGGGAGGGAA +
Preference number: 3 (lower is better)
Translates to: LQLNMLLFLRSRLSHSSPCPAWL*SDRGRE
Trigger: TTCCCTCCCCCTATCACTCAAGAGCCAGGCAGGGCA...GGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACGGTTGGTACCTTAGCTaGGAACAGACCTGGATGAAC +
Preference number: 3 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDGWYLS*EQTWMN
Trigger: GTTCATCCAGGTCTGTTCCAAGCTAAGGTACCAACC...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR-3UTR CAA 90 bp GGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCTCCCGGTTGGTACCTTAGCTaGGAACAGACCTGGATGAAC +
Preference number: 3 (lower is better)
Translates to: GLGAVTLRINTLCLSWSPGWYLS*EQTWMN
Trigger: GTTCATCCAGGTCTGTTCCAAGCTAAGGTACCAACC...GGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR CCA 72 bp GTCAGGGATGGCAGTGCATGCCCGAAATCCCAGCACTaGGGAGGCCGGAAATCTGAAAAGGCCAGGTGTACA +
Preference number: 3 (lower is better)
Translates to: VRDGSACPKSQH*GGRKSEKARCT
Trigger: TGTACACCTGGCCTTTTCAGATTTCCGGCCTCCCCAGTGCTGGGATTTCGGGCATGCACTGCCATCCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CAA 90 bp CTGTGCTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAGGGGCTTTTCACAATACCCTTCTaGCTGCAAACAGAATTTTCC +
Preference number: 3 (lower is better)
Translates to: LCCAFLSALPGTRRGQGLFTIPF*LQTEFS
Trigger: GGAAAATTCTGTTTGCAGCAAGAAGGGTATTGTGAA...AAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR-3UTR CAA 90 bp AGTCAGAAGAGGGCATTGGAGACCCTAGAACTAGAGTTAGAGACAGTTGCTGAGACCCTGAGGCCTGGCTaGGGGGCTGTCACACTGCGA +
Preference number: 3 (lower is better)
Translates to: SQKRALETLELELETVAETLRPG*GAVTLR
Trigger: TCGCAGTGTGACAGCCCCCAAGCCAGGCCTCAGGGT...CTCAGCAACTGTCTCTAACTCTAGTTCTAGGGTCTCCAATGCCCTCTTCTGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR GCA 72 bp TTCACAGGTAGATCCGGGCTACAGAGACCTAAAACCTaGCCTTGGGACTCGGAGCATGTTCTCCTCCACCCA +
Preference number: 3 (lower is better)
Translates to: FTGRSGLQRPKT*PWDSEHVLLHP
Trigger: TGGGTGGAGGAGAACATGCTCCGAGTCCCAAGGGCAGGTTTTAGGTCTCTGTAGCCCGGATCTACCTGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp GCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTaGTCTCCCCCTCTTGGTTTTTCAGCCAAAGCTGGT +
Preference number: 3 (lower is better)
Translates to: AVTLRINTLCLS*SPPLGFSAKAG
Trigger: ACCAGCTTTGGCTGAAAAACCAAGAGGGGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR TCA 72 bp ATGCCCGAAATCCCAGCACTGGGGAGGCCGGAAATCTaGAAAGGCCAGGTGTACACACATACGTGTAGTCTT +
Preference number: 3 (lower is better)
Translates to: MPEIPALGRPEI*KGQVYTHTCSL
Trigger: AAGACTACACGTATGTGTGTACACCTGGCCTTTTCAGATTTCCGGCCTCCCCAGTGCTGGGATTTCGGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp ATCCAAGAGTGGGAATATTTGGAAACAAGTCAGGGATaGCAGTGCATGCCCGAAATCCCAGCACTGGGGAGG +
Preference number: 3 (lower is better)
Translates to: IQEWEYLETSQG*QCMPEIPALGR
Trigger: CCTCCCCAGTGCTGGGATTTCGGGCATGCACTGCCATCCCTGACTTGTTTCCAAATATTCCCACTCTTGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CAA 90 bp GGACCACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTGCTTCACAATACCCTTCTaGCTGCAAACAGAATTTTCC +
Preference number: 3 (lower is better)
Translates to: GPPPAPTVYCAVPSSPLCFTIPF*LQTEFS
Trigger: GGAAAATTCTGTTTGCAGCAAGAAGGGTATTGTGAA...GCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
3UTR TCA 72 bp CGGATGGTTGTGAGTCACCATGTGGTTGCTGGGATTTaGACTCAGAACCTTTGGAAGAGCAGTCGGTGCTCT +
Preference number: 3 (lower is better)
Translates to: RMVVSHHVVAGI*TQNLWKSSRCS
Trigger: AGAGCACCGACTGCTCTTCCAAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCATCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp AAAGTCTCAAAACAACCGGGAAAAAGAAGCTGTGTGTaGGAGAACTCATCTGTTGTCCCAGGCCTTCACAGG +
Preference number: 3 (lower is better)
Translates to: KVSKQPGKRSCV*ENSSVVPGLHR
Trigger: CCTGTGAAGGCCTGGGACAACAGATGAGTTCTCCCACACACAGCTTCTTTTTCCCGGTTGTTTTGAGACTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp CTCATTACGGATGGTTGTGAGTCACCATGTGGTTGCTaGGATTTGAACTCAGAACCTTTGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: LITDGCESPCGC*DLNSEPLEEQS
Trigger: CGACTGCTCTTCCAAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCATCCGTAATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CAA 90 bp GTCCTGCTGGAGATTAGGGTAACTTTGATAATGCAGTCAGTTCTCTGTATCTGGCTTCAGTTAAACATGTaGCTCTTCCTCCGGAGCCGG +
Preference number: 3 (lower is better)
Translates to: VLLEIRVTLIMQSVLCIWLQLNM*LFLRSR
Trigger: CCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG...CCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCTAATCTCCAGCAGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR-3UTR CAA 90 bp TGTGGAAATGTTGTTCCAAAGCCCATATACACTCAATGGAAAGCACTGTCGCTGTTGAACTCAGAACCTTaGGAAGAGCAGTCGGTGCTC +
Preference number: 3 (lower is better)
Translates to: CGNVVPKPIYTQWKALSLLNSEP*EEQSVL
Trigger: GAGCACCGACTGCTCTTCCAAAGGTTCTGAGTTCAA...CAGCGACAGTGCTTTCCATTGAGTGTATATGGGCTTTGGAACAACATTTCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp CCTCTAGCCACAGGTTTTATGTTGCAGATCCAAGAGTaGGAATATTTGGAAACAAGTCAGGGATGGCAGTGC +
Preference number: 3 (lower is better)
Translates to: PLATGFMLQIQE*EYLETSQGWQC
Trigger: GCACTGCCATCCCTGACTTGTTTCCAAATATTCCCACTCTTGGATCTGCAACATAAAACCTGTGGCTAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR TCA 72 bp TTGTATATCTGTGTGCCATGTACATACAGGGTCCACTaGAGTCAGAAGAGGGCATTGGAGACCCTAGAACTA +
Preference number: 3 (lower is better)
Translates to: LYICVPCTYRVH*SQKRALETLEL
Trigger: TAGTTCTAGGGTCTCCAATGCCCTCTTCTGACTTCAGTGGACCCTGTATGTACATGGCACACAGATATACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR TCA 72 bp TTTTTGATTTATTTAGTAGCTGTCTTCAGACTCACCTaGAGGGGGTGTCAGATCTCATTACGGATGGTTGTG +
Preference number: 3 (lower is better)
Translates to: FLIYLVAVFRLT*RGCQISLRMVV
Trigger: CACAACCATCCGTAATGAGATCTGACACCCCCTTCAGGTGAGTCTGAAGACAGCTACTAAATAAATCAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR GCA 72 bp TTTTTATGGGGTATCTTGCCTGTTTGTATATCTGTGTaGCATGTACATACAGGGTCCACTGAAGTCAGAAGA +
Preference number: 3 (lower is better)
Translates to: FLWGILPVCISV*HVHTGSTEVRR
Trigger: TCTTCTGACTTCAGTGGACCCTGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCCATAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp ACTTTGATAATGCAGTCAGTTCTCTGTATCTGGAGTTaGTTGTTGTCAGTGCTGGGAATTGAGTTTAGCAAG +
Preference number: 3 (lower is better)
Translates to: TLIMQSVLCIWS*LLSVLGIEFSK
Trigger: CTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CCA 72 bp AGGGTAACTTTGATAATGCAGTCAGTTCTCTGTATCTaGAGTTGGTTGTTGTCAGTGCTGGGAATTGAGTTT +
Preference number: 3 (lower is better)
Translates to: RVTLIMQSVLCI*SWLLSVLGIEF
Trigger: AAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR GCA 72 bp AGTCAGTTCTCTGTATCTGGAGTTGGTTGTTGTCAGTaGTGGGAATTGAGTTTAGCAAGCATTTTATCAGTA +
Preference number: 3 (lower is better)
Translates to: SQFSVSGVGCCQ*WELSLASILSV
Trigger: TACTGATAAAATGCTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp GCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGCGGCCCTGGCGGTCCTaGCTCCCCCATGGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: ALEAGLPSALRQAGPGLGRPWRS*LPHGCP
Trigger: GGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCG...CCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp AGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGCCTGCCTCGCAGCCGCTGCTaGCCACCTCGGCTGGGGCCT +
Preference number: 4 (lower is better)
Translates to: SPQYVGLTLRPPRPLSGLPRSRC*PPRLGP
Trigger: AGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGG...CAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp TGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCTTGACGGCACTGCTCTaGACCAGGGCCTCGCAGCCG +
Preference number: 4 (lower is better)
Translates to: WSQRCHPDPPSPLAQGAALTALL*TRASQP
Trigger: CGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCAA...GGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCCGGCCCTGGCGGTCCTaGCTCCCCCATGGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSRPWRS*LPHGCP
Trigger: GGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCG...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GCATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTCGCAGCCGCTGCTaGCCACCTCGGCTGGGGCCT +
Preference number: 4 (lower is better)
Translates to: AFPLPTHSSRPRRTRCGPPRSRC*PPRLGP
Trigger: AGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGG...AGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAATGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGCTCAGGATTGCTCAATaGGGCCAGGTGGGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: GAALSMWVSPCALPAHSALRIAQ*GQVGRL
Trigger: GAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAG...CGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp AGGCCTGGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGCGGCCCTGGCGGTCCTaGCTCCCCCATGGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: RPGLGAVTLRINTLCLSWRPWRS*LPHGCP
Trigger: GGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCG...CCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGTGTTGGCCTGCAGCGTaGACTCCCGGCCACAGACCT +
Preference number: 4 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPCWPAA*TPGHRP
Trigger: AGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACA...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCAATAGATGTCCGGCCCTaGCGGTCCTGGCTCCCCCAT +
Preference number: 4 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAIDVRP*RSWLPH
Trigger: ATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTAT...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCATCCAGGTAGTGCCATGCTaGGCTCGGGGAAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: SQRCHPDPPSPLAQGAAIQVVPC*ARGSHP
Trigger: GGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTG...GATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCAGGTAGTGCCATGCTaGGCTCGGGGAAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPQVVPC*ARGSHP
Trigger: GGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTG...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCCTGCCAGCTCCATCATaGGGTCTTGGCTGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: WSQRCHPDPPSPLAQGAALPAPS*GLGCPG
Trigger: GCCTGGACAGCCAAGACCCCATGATGGAGCTGGCAG...GGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTTGTTGGCCTGCAGCGTaGACTCCCGGCCACAGACCT +
Preference number: 4 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPCWPAA*TPGHRP
Trigger: AGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACA...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGCTCGGCTGGGGCCTCTaGAGGGCCCGGGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLLGWGL*RARVFV
Trigger: GACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAG...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCAGCCGGTCCAGCTGTaGCTTCTTGTGGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPQPVQL*LLVALH
Trigger: GTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTG...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGTCGCACATGCGACACTaGCAGCGTTTCTGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: ALEAGLPSALRQAGPGLGSHMRH*QRFWRS
Trigger: TGACCGCCAGAAACGCTGGCAGTGTCGCATGTGCGA...CCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGTCGCACATGCGACACTaGCAGCGTTTCTGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: EGALEAGLPSALRQAGPGSHMRH*QRFWRS
Trigger: TGACCGCCAGAAACGCTGGCAGTGTCGCATGTGCGA...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACACCTGCTTGATAGATGTCCGGCCCTaGCGGTCCTGGCTCCCCCAT +
Preference number: 4 (lower is better)
Translates to: FLRSRLSHSSPTPHDTCLIDVRP*RSWLPH
Trigger: ATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTAT...CAAGCAGGTGTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCACAGGTAGTGCCATGCTaGGCTCGGGGAAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSQVVPC*ARGSHP
Trigger: GGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTG...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCACAGCCTCGAACTCGCTaGACTCCTGCCACACGAAGC +
Preference number: 4 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAQPRTR*TPATRS
Trigger: GCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTG...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CTGTGCTGTGCCTTCCTCTCCGCTTTGCCCGGCACAAGGCGAGGGCAGGGGCTTTGTGGCGCTCCACTGTaGAACCCGCCGTGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: LCCAFLSALPGTRRGQGLCGAPL*NPPCQP
Trigger: AGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACA...AAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp TTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACACCTGCTTGCACTGCCAGCGTTTCTaGCGGTCACCCGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: FLRSRLSHSSPTPHDTCLHCQRF*RSPAST
Trigger: AGTGGAGGCGGGTGACCGCCAGAAACGCTGGCAGTG...CAAGCAGGTGTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGCATTCGACACAGACATaGCAGCGGCCACTCTCGTGC +
Preference number: 4 (lower is better)
Translates to: ALEAGLPSALRQAGPGLGHSTQT*QRPLSC
Trigger: GCACGAGAGTGGCCGCTGCCATGTCTGTGTCGAATG...CCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGGTACGGGCACTTGAATaGCTTGCTGCCTGCGTGCAG +
Preference number: 4 (lower is better)
Translates to: EGALEAGLPSALRQAGPGVRALE*LAACVQ
Trigger: CTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTAC...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGCCCAGCACAGCCGCCTaGGCCAAGGACAGCACCACC +
Preference number: 4 (lower is better)
Translates to: VGSVGQCRGSDVLKGQSRPSTAA*AKDSTT
Trigger: GGTGGTGCTGTCCTTGGCTCAGGCGGCTGTGCTGGG...CCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGAGCCCTGCTCTGGTTTaGCGAGTTCTGTCGTCGATG +
Preference number: 4 (lower is better)
Translates to: ALEAGLPSALRQAGPGLGSPALV*RVLSSM
Trigger: CATCGACGACAGAACTCGTCAAACCAGAGCAGGGCT...CCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCACGCACACCTTGCACTTaGACGGCTTCACAGGCGAGT +
Preference number: 4 (lower is better)
Translates to: ALRQAGPGLGPHACLHGARTPCT*TASQAS
Trigger: ACTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCG...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCGCACACCTTGCACTTaGACGGCTTCACAGGCGAGT +
Preference number: 4 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPRTPCT*TASQAS
Trigger: ACTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCG...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTCTCGGCTGGGGCCTCTaGAGGGCCCGGGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: VAWFWAAEGQPSVCGSHPLGWGL*RARVFV
Trigger: GACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAG...AGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGCTCGGCTGGGGCCTCTaGAGGGCCCGGGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: QLVIHLGQGPSGMAAFGKLGWGL*RARVFV
Trigger: GACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAG...CTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTGTCCAGGTAGTGCCATaGTGGGCTCGGGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPVQVVP*WARGSH
Trigger: ATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGAC...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp TCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCATCAACTCGCTGGACTCCTaGCACACGAAGCCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: SQRCHPDPPSPLAQGAAINSLDS*HTKPCS
Trigger: AGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTT...GATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCCAGCCGGTCCAGCTGTaGCTTCTTGTGGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFQPVQL*LLVALH
Trigger: GTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTG...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp TCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCATCCCATGCCACACTCAGTaGACACGAAGGGCCGCACAT +
Preference number: 4 (lower is better)
Translates to: SQRCHPDPPSPLAQGAAIPCHTQ*TRRAAH
Trigger: ATGTGCGGCCCTTCGTGTGCACTGAGTGTGGCATGG...GATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGGCTTCACAGGCGAGTaGACAATCATGTGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: GAALSMWVSPCALPAHSAGFTGE*TIMWVL
Trigger: CAAGACCCACATGATTGTGCACTCGCCTGTGAAGCC...CGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCAGAGGGGTCAGGGCCTaGCAGCTCCATCATGGGGTC +
Preference number: 4 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFRGVRA*QLHHGV
Trigger: GACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCT...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCAGGCCATGTCCAGCTCTaGCCTTGGAGTTCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAGHVQL*PWSSRQ
Trigger: TTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCC...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCAGCCTCGAACTCGCTaGACTCCTGCCACACGAAGC +
Preference number: 4 (lower is better)
Translates to: PLRTATLGPRDVTPTLPPQPRTR*TPATRS
Trigger: GCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTG...GGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TCCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCGGCCGGACGCTGGTGTaGATCAGCATGTGGCGCTTC +
Preference number: 4 (lower is better)
Translates to: SPEDSHSWSQRCHPDPPSGRTLV*ISMWRF
Trigger: GAAGCGCCACATGCTGATCCACACCAGCGTCCGGCC...GGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp AGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGCCTGTCCATCATGGGGTCTTaGCTGTCCAGGCTGATGTCC +
Preference number: 4 (lower is better)
Translates to: SPQYVGLTLRPPRPLSGLSIMGS*LSRLMS
Trigger: GGACATCAGCCTGGACAGCCAAGACCCCATGATGGA...CAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCGACACGAGTGTGGCTTaGTGCCGTTGTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSDTSVA*CRCGPG
Trigger: TCCTGGGCCACAACGGCATCAAGCCACACTCGTGTC...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGGAGTGCTGCTTGAGGTaGTGGATCTGGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPECCLR*WIWLNS
Trigger: GGAGTTCAGCCAGATCCATCACCTCAAGCAGCACTC...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp CCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTGGTTATGTTGGCCTGCAGCGTaGACTCCCGGCCACAGACCT +
Preference number: 4 (lower is better)
Translates to: PAHAQQQAKENQMRTSWLCWPAA*TPGHRP
Trigger: AGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACA...TAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GCTCTGCAGGCCAGCTGGGAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCGGTTGTACATGCGGTTaGAGGACTTCCCGCACACCT +
Preference number: 4 (lower is better)
Translates to: ALQASWEGALEAGLPSALGCTCG*RTSRTP
Trigger: AGGTGTGCGGGAAGTCCTTCAACCGCATGTACAACC...GAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CTGGAGAGCGCCTCCGCGCCTGAGGTGGCTTGGGGAAGACCTCTAAGTCTGTGCGTCCAGGTAGTGCCATaGTGGGCTCGGGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: LESASAPEVAWGRPLSLCVQVVP*WARGSH
Trigger: ATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGAC...GCACAGACTTAGAGGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGTGCCACACGAAGCCCTaGTCTGGTTTGACGAGTTCT +
Preference number: 4 (lower is better)
Translates to: EGALEAGLPSALRQAGPGCHTKP*SGLTSS
Trigger: AGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCA...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTGGTTACAGCCGGTCCAGCTGTaGCTTCTTGTGGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: PAHAQQQAKENQMRTSWLQPVQL*LLVALH
Trigger: GTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTG...TAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTGGCTTCACCTCCGAGTaGAGCAGCATGTGGCGTTTG +
Preference number: 4 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPGFTSE*SSMWRL
Trigger: CAAACGCCACATGCTGCTGCACTCGGAGGTGAAGCC...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCGGCTTCACCTCCGAGTaGAGCAGCATGTGGCGTTTG +
Preference number: 4 (lower is better)
Translates to: PLRTATLGPRDVTPTLPPGFTSE*SSMWRL
Trigger: CAAACGCCACATGCTGCTGCACTCGGAGGTGAAGCC...GGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGG +
Preference number: 4 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPMSMTP*LTFMCR
Trigger: CCGGCACATGAAGGTCAAGCACGGCGTCATGGACAT...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCAATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGG +
Preference number: 4 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAMSMTP*LTFMCR
Trigger: CCGGCACATGAAGGTCAAGCACGGCGTCATGGACAT...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGATAGATGTCCGGCCCTaGCGGTCCTGGCTCCCCCAT +
Preference number: 4 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLIDVRP*RSWLPH
Trigger: ATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTAT...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCGTGGGGACACGAGTGTaGCTTGATGCCGTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSVGTRV*LDAVVA
Trigger: GGCCACAACGGCATCAAGCCACACTCGTGTCCCCAC...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAATGGGGCCTCGTGCCCTaGTGTGTCAGCAGGTGCGTC +
Preference number: 4 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKWGLVP*CVSRCV
Trigger: GACGCACCTGCTGACACACCAGGGCACGAGGCCCCA...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp AGGCAGTGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTTGGGGCCTCGTGCCCTaGTGTGTCAGCAGGTGCGTC +
Preference number: 4 (lower is better)
Translates to: RQWAVAWFWAAEGQPSVCWGLVP*CVSRCV
Trigger: GACGCACCTGCTGACACACCAGGGCACGAGGCCCCA...ACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGTGGTGGGAGGCCAGGTaGCGCTTGAGCTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQWWEAR*RLSWVR
Trigger: CCTGACCCAGCTCAAGCGCCACCTGGCCTCCCACCA...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGTGGTGGGAGGCCAGGTaGCGCTTGAGCTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: QLVIHLGQGPSGMAAFGKWWEAR*RLSWVR
Trigger: CCTGACCCAGCTCAAGCGCCACCTGGCCTCCCACCA...CTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTGGTTAGGCCGGACGCTGGTGTaGATCAGCATGTGGCGCTTC +
Preference number: 4 (lower is better)
Translates to: PAHAQQQAKENQMRTSWLGRTLV*ISMWRF
Trigger: GAAGCGCCACATGCTGATCCACACCAGCGTCCGGCC...TAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGGTGCTAAGCATCCCTTaGCTGTCCAGGCTGATGTCC +
Preference number: 4 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPVLSIP*LSRLMS
Trigger: GGACATCAGCCTGGACAGCCAAGGGATGCTTAGCAC...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCAGCAGTACGGGCACTTaGATGGCTTGCTGCCTGCGT +
Preference number: 4 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFSSTGT*MACCLR
Trigger: ACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCT...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACAGCAGTACGGGCACTTaGATGGCTTGCTGCCTGCGT +
Preference number: 4 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDSSTGT*MACCLR
Trigger: ACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCT...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GCTCTGCAGGCCAGCTGGGAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCTGCCACACGAAGCCCTaGTCTGGTTTGACGAGTTCT +
Preference number: 4 (lower is better)
Translates to: ALQASWEGALEAGLPSALCHTKP*SGLTSS
Trigger: AGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCA...GAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGCAGCGGCCACTCTCGTaGTTCACCTCATGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLQRPLS*FTSWAL
Trigger: CAAGGCCCATGAGGTGAAGCACGAGAGTGGCCGCTG...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp TCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCATCGGCTTCACAGGCGAGTaGACAATCATGTGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: SQRCHPDPPSPLAQGAAIGFTGE*TIMWVL
Trigger: CAAGACCCACATGATTGTGCACTCGCCTGTGAAGCC...GATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp TGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTAGAGGGGTCAGGGCCTaGCAGCTCCATCATGGGGTC +
Preference number: 4 (lower is better)
Translates to: WAVAWFWAAEGQPSVCGSRGVRA*QLHHGV
Trigger: GACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCT...AGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp GTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTTGCTGGCCTCCGCGCTaGTGTCCACACTGCTGTAGG +
Preference number: 4 (lower is better)
Translates to: VAWFWAAEGQPSVCGSHPCWPPR*CPHCCR
Trigger: CCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCA...AGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp GGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGCCTCAGCACTTATGGTaGCTCCGAAGAGCTCATTTT +
Preference number: 4 (lower is better)
Translates to: GAALSMWVSPCALPAHSAPQHLW*LRRAHF
Trigger: AAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGG...CGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TCCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCGTCCTGGCTCCCCCATaGCTGTCCCAGTCAATTCTG +
Preference number: 4 (lower is better)
Translates to: SPEDSHSWSQRCHPDPPSVLAPP*LSQSIL
Trigger: CAGAATTGACTGGGACAGCCATGGGGGAGCCAGGAC...GGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAATCCCGGGCTGGATCTaGGAAAGGAGGATCGAATGG +
Preference number: 4 (lower is better)
Translates to: SALRQAGPGLGPHACLHGIPGWI*ERRIEW
Trigger: CCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGAT...TCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAATCCCGGGCTGGATCTaGGAAAGGAGGATCGAATGG +
Preference number: 4 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSIPGWI*ERRIEW
Trigger: CCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGAT...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGCAGCCTCGAACTCGCTaGACTCCTGCCACACGAAGC +
Preference number: 4 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLQPRTR*TPATRS
Trigger: GCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTG...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTTGTGGCGCTCCACTGTaGAACCCGCCGTGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: WAVAWFWAAEGQPSVCGSCGAPL*NPPCQP
Trigger: AGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACA...AGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGTGGCGCTCCACTGTaGAACCCGCCGTGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: VGSVGQCRGSDVLKGQSRCGAPL*NPPCQP
Trigger: AGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACA...CCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGTGGGGACACGAGTGTaGCTTGATGCCGTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCVGTRV*LDAVVA
Trigger: GGCCACAACGGCATCAAGCCACACTCGTGTCCCCAC...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCGGACGCTGGTGTaGATCAGCATGTGGCGCTTC +
Preference number: 4 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKGRTLV*ISMWRF
Trigger: GAAGCGCCACATGCTGATCCACACCAGCGTCCGGCC...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp TCCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCGAAGAGCTCATTTTCTaGGACCAGGCCCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: SPEDSHSWSQRCHPDPPSEELIF*DQAQHS
Trigger: GCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTC...GGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCTGCCTTCTCAAACTTaGCCTTGGGTACCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPLPSQT*PWVPAS
Trigger: TGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAG...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGGACACGAGTGTGGCTTaGTGCCGTTGTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: VGSVGQCRGSDVLKGQSRDTSVA*CRCGPG
Trigger: TCCTGGGCCACAACGGCATCAAGCCACACTCGTGTC...CCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCAACTCGCTGGACTCCTaGCACACGAAGCCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCNSLDS*HTKPCS
Trigger: AGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTT...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGTCAGCAGGTGCGTCTaGAGGTGGCTAGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: QLVIHLGQGPSGMAAFGKVSRCV*RWLGCL
Trigger: CAAGCAGCCTAGCCACCTGCAGACGCACCTGCTGAC...CTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCTCCCAGCTAGTGATACACCTGGGCCAGGGCCCCTCAGGCATGGCTGCTTTCATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGG +
Preference number: 4 (lower is better)
Translates to: GSQLVIHLGQGPSGMAAFMSMTP*LTFMCR
Trigger: CCGGCACATGAAGGTCAAGCACGGCGTCATGGACAT...GAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGGGCCATGTCCAGCTCTaGCCTTGGAGTTCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLGHVQL*PWSSRQ
Trigger: TTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCC...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GCTCTGCAGGCCAGCTGGGAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCTCGTCGATGTCATGTTaGGAGGCTCAGGATTGCTCA +
Preference number: 4 (lower is better)
Translates to: ALQASWEGALEAGLPSALSSMSC*EAQDCS
Trigger: TGAGCAATCCTGAGCCTCCCAACATGACATCGACGA...GAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTTCCTTCACACCCTTGTaGGTGAGAGAGTGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPSFTPL*VRECCL
Trigger: CAAGCAGCACTCTCTCACCCACAAGGGTGTGAAGGA...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTCCATCATGGGGTCTTaGCTGTCCAGGCTGATGTCC +
Preference number: 4 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSSIMGS*LSRLMS
Trigger: GGACATCAGCCTGGACAGCCAAGACCCCATGATGGA...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp AGGCAGTGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTCTGCCAGCTCCATCATaGGGTCTTGGCTGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: RQWAVAWFWAAEGQPSVCLPAPS*GLGCPG
Trigger: GCCTGGACAGCCAAGACCCCATGATGGAGCTGGCAG...ACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp AGGCAGTGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGTCGGTCTGTGTCCCTaGGTCCATGAAGCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: RQWAVAWFWAAEGQPSVCVGLCP*VHEALH
Trigger: ATGGAGGGCTTCATGGACTCAGGGACACAGACCGAC...ACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp AGGCCTGGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGGAAGAGCTCATTTTCTaGGACCAGGCCCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: RPGLGAVTLRINTLCLSWEELIF*DQAQHS
Trigger: GCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTC...CCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp CCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTGGTTAAGCCCTGCTCTGGTTTaGCGAGTTCTGTCGTCGATG +
Preference number: 4 (lower is better)
Translates to: PAHAQQQAKENQMRTSWLSPALV*RVLSSM
Trigger: CATCGACGACAGAACTCGTCAAACCAGAGCAGGGCT...TAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAACGCACACCTTGCACTTaGACGGCTTCACAGGCGAGT +
Preference number: 4 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKRTPCT*TASQAS
Trigger: ACTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCG...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGACCACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTGCGTCCAGGTAGTGCCATaGTGGGCTCGGGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: GPPPAPTVYCAVPSSPLCVQVVP*WARGSH
Trigger: ATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGAC...GCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp GCATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTTGCCACACGAAGCCCTaGTCTGGTTTGACGAGTTCT +
Preference number: 4 (lower is better)
Translates to: AFPLPTHSSRPRRTRCGPCHTKP*SGLTSS
Trigger: AGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCA...AGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGCCATGCCACACTCAGTaGACACGAAGGGCCGCACAT +
Preference number: 4 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQPCHTQ*TRRAAH
Trigger: ATGTGCGGCCCTTCGTGTGCACTGAGTGTGGCATGG...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCTCCCGAATGGCTTGCTGCCTaGGTGCAGGTGCATATGACC +
Preference number: 4 (lower is better)
Translates to: GLGAVTLRINTLCLSWSPEWLAA*VQVHMT
Trigger: GGTCATATGCACCTGCACGCAGGCAGCAAGCCATTC...GGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACTGCTTGACCTTCATGTaGCGGCTCAGGTTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDCLTFM*RLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCA...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCATCTCTTTCATGGCCTaGTCAGTGAGGGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCISFMA*SVRVLA
Trigger: GGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGAT...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp CTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCCACTGCCAGCGTTTCTaGCGGTCACCCGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: LQLNMLLFLRSRLSHSSPHCQRF*RSPAST
Trigger: AGTGGAGGCGGGTGACCGCCAGAAACGCTGGCAGTG...GGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCTGGGGCCTCGTGCCCTaGTGTGTCAGCAGGTGCGTC +
Preference number: 4 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPWGLVP*CVSRCV
Trigger: GACGCACCTGCTGACACACCAGGGCACGAGGCCCCA...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATGCACATTAGGGACATTCTTTCAAACGAGGCTGGGGCAGGGGAGCTCTGCAGGTGGTGGGAGGCCAGGTaGCGCTTGAGCTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: MHIRDILSNEAGAGELCRWWEAR*RLSWVR
Trigger: CCTGACCCAGCTCAAGCGCCACCTGGCCTCCCACCA...CCTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGAATGTCCCTAATGTGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CAA 72 bp TCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTaGCCCGGCACAAGGCGAGGGCAGGGGCTTTTTCAG +
Preference number: 4 (lower is better)
Translates to: SNCVLCCAFLSA*PGTRRGQGLFQ
Trigger: CTGAAAAAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp CTGGAGAGCGCCTCCGCGCCTGAGGTGGCTTGGGGAAGACCTCTAAGTCTGTGCAAGGGCCGCACATTCTaGTGCTTGAGCATGTGGTTT +
Preference number: 4 (lower is better)
Translates to: LESASAPEVAWGRPLSLCKGRTF*CLSMWF
Trigger: AAACCACATGCTCAAGCATCAGAATGTGCGGCCCTT...GCACAGACTTAGAGGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGAGTGCTGCTTGAGGTaGTGGATCTGGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: VAWFWAAEGQPSVCGSHPECCLR*WIWLNS
Trigger: GGAGTTCAGCCAGATCCATCACCTCAAGCAGCACTC...AGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGTTGTACATGCGGTTaGAGGACTTCCCGCACACCT +
Preference number: 4 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKGCTCG*RTSRTP
Trigger: AGGTGTGCGGGAAGTCCTTCAACCGCATGTACAACC...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp AGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGCCTGAATTGCAGACTGTGTTaGACTAGAAGAGGCATACGA +
Preference number: 4 (lower is better)
Translates to: SPQYVGLTLRPPRPLSGLNCRLC*TRRGIR
Trigger: TCGTATGCCTCTTCTAGTTCAACACAGTCTGCAATT...CAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp TGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCCAGCGGCCACTCTCGTaGTTCACCTCATGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: CRRETRPGSSILFLESASQRPLS*FTSWAL
Trigger: CAAGGCCCATGAGGTGAAGCACGAGAGTGGCCGCTG...GGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACGGTTTTGTAGCTGGCTaGGGTAGTGGAAGGACTTGT +
Preference number: 4 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDGFVAG*GSGRTC
Trigger: ACAAGTCCTTCCACTACCGCAGCCAGCTACAAAACC...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGAATGGCTTGCTGCCTaGGTGCAGGTGCATATGACC +
Preference number: 4 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKEWLAA*VQVHMT
Trigger: GGTCATATGCACCTGCACGCAGGCAGCAAGCCATTC...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGATGCTGGCCTCCGCGCTaGTGTCCACACTGCTGTAGG +
Preference number: 4 (lower is better)
Translates to: ASAGVQMSLKARVGAEERCWPPR*CPHCCR
Trigger: CCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCA...TCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCACCTCAGCACTTATGGTaGCTCCGAAGAGCTCATTTT +
Preference number: 4 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSPQHLW*LRRAHF
Trigger: AAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGG...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGATCCCGGGCTGGATCTaGGAAAGGAGGATCGAATGG +
Preference number: 4 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQIPGWI*ERRIEW
Trigger: CCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGAT...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATGCACATTAGGGACATTCTTTCAAACGAGGCTGGGGCAGGGGAGCTCTGCAGGCTCAGGATTGCTCAATaGGGCCAGGTGGGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: MHIRDILSNEAGAGELCRLRIAQ*GQVGRL
Trigger: GAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAG...CCTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGAATGTCCCTAATGTGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGACACTGCCAGCGTTTCTaGCGGTCACCCGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: PESVQKRDKAWLKHSLPGHCQRF*RSPAST
Trigger: AGTGGAGGCGGGTGACCGCCAGAAACGCTGGCAGTG...TCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGAAGAGCTTGCTGCAGTaGGGACACGAGTGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQKSLLQ*GHECGL
Trigger: CAAGCCACACTCGTGTCCCCACTGCAGCAAGCTCTT...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GGACCACCTCCAGCTCCAACTGTGTACTGTGCTGTGCCTTCCTCTCCGCTTTGCCATTCGACACAGACATaGCAGCGGCCACTCTCGTGC +
Preference number: 4 (lower is better)
Translates to: GPPPAPTVYCAVPSSPLCHSTQT*QRPLSC
Trigger: GCACGAGAGTGGCCGCTGCCATGTCTGTGTCGAATG...GCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCGACACGAGTGTGGCTTaGTGCCGTTGTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPDTSVA*CRCGPG
Trigger: TCCTGGGCCACAACGGCATCAAGCCACACTCGTGTC...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCTCCCAAGGGCCGCACATTCTaGTGCTTGAGCATGTGGTTT +
Preference number: 4 (lower is better)
Translates to: GLGAVTLRINTLCLSWSPKGRTF*CLSMWF
Trigger: AAACCACATGCTCAAGCATCAGAATGTGCGGCCCTT...GGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp GTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTCGCTGCTGTCCACACTaGTGTAGGTGTAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: VAWFWAAEGQPSVCGSHPRCCPH*CRCRRF
Trigger: AAAACGCCTACACCTACAGCAGTGTGGACAGCAGCG...AGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp CCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGTGGGGACACGAGTGTaGCTTGATGCCGTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: PESVQKRDKAWLKHSLPGVGTRV*LDAVVA
Trigger: GGCCACAACGGCATCAAGCCACACTCGTGTCCCCAC...TCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GGCCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGCATTCGACACAGACATaGCAGCGGCCACTCTCGTGC +
Preference number: 4 (lower is better)
Translates to: GQSRCRRETRPGSSILFLHSTQT*QRPLSC
Trigger: GCACGAGAGTGGCCGCTGCCATGTCTGTGTCGAATG...CAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCGTCGGTCTGTGTCCCTaGGTCCATGAAGCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPVGLCP*VHEALH
Trigger: ATGGAGGGCTTCATGGACTCAGGGACACAGACCGAC...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GGCCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAAGAGCTCATTTTCTaGGACCAGGCCCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: GQSRCRRETRPGSSILFLEELIF*DQAQHS
Trigger: GCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTC...CAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp TGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCAGCCCTGCTCTGGTTTaGCGAGTTCTGTCGTCGATG +
Preference number: 4 (lower is better)
Translates to: CRRETRPGSSILFLESASSPALV*RVLSSM
Trigger: CATCGACGACAGAACTCGTCAAACCAGAGCAGGGCT...GGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp CTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCGGTTGTACATGCGGTTaGAGGACTTCCCGCACACCT +
Preference number: 4 (lower is better)
Translates to: LQLNMLLFLRSRLSHSSPGCTCG*RTSRTP
Trigger: AGGTGTGCGGGAAGTCCTTCAACCGCATGTACAACC...GGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp CCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCTGGTTAAAGTCCTCCATCTCCTaGTGGTTGTCAAGTTCAGAG +
Preference number: 4 (lower is better)
Translates to: PAHAQQQAKENQMRTSWLKSSIS*WLSSSE
Trigger: CTCTGAACTTGACAACCATCAGGAGATGGAGGACTT...TAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp ATGCACATTAGGGACATTCTTTCAAACGAGGCTGGGGCAGGGGAGCTCTGCAGGGGCTTCACCTCCGAGTaGAGCAGCATGTGGCGTTTG +
Preference number: 4 (lower is better)
Translates to: MHIRDILSNEAGAGELCRGFTSE*SSMWRL
Trigger: CAAACGCCACATGCTGCTGCACTCGGAGGTGAAGCC...CCTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGAATGTCCCTAATGTGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCATCTCTTTCATGGCCTaGTCAGTGAGGGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: LQLNMLLFLRSRLSHSSPISFMA*SVRVLA
Trigger: GGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGAT...GGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp CCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGGCCATGTCCAGCTCTaGCCTTGGAGTTCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: PESVQKRDKAWLKHSLPGGHVQL*PWSSRQ
Trigger: TTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCC...TCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCCATTTGGTCTAAAGATCCCTCTCAGGATTGCTCAATaGGGCCAGGTGGGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: GQLPARTVVESPFGLKIPLRIAQ*GQVGRL
Trigger: GAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAG...AGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp GTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTCGTCGATGTCATGTTaGGAGGCTCAGGATTGCTCA +
Preference number: 4 (lower is better)
Translates to: VGSVGQCRGSDVLKGQSRSSMSC*EAQDCS
Trigger: TGAGCAATCCTGAGCCTCCCAACATGACATCGACGA...CCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGTACGGGCACTTGAATaGCTTGCTGCCTGCGTGCAG +
Preference number: 4 (lower is better)
Translates to: PESVQKRDKAWLKHSLPGVRALE*LAACVQ
Trigger: CTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTAC...TCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GTGTGCCATGTACATACAGGGTCCACTGAAGTCAGAAGAGGGCATTGGAGACCCTCGCACATGCGACACTaGCAGCGTTTCTGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: VCHVHTGSTEVRRGHWRPSHMRH*QRFWRS
Trigger: TGACCGCCAGAAACGCTGGCAGTGTCGCATGTGCGA...GGGTCTCCAATGCCCTCTTCTGACTTCAGTGGACCCTGTATGTACATGGCACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp GTAGGCGTTTTCCTCGAAGTCCTCCATCTCCTGATGGTTGTCAAGTTCAGAGGGGTCAGCAGGTGCGTCTaGAGGTGGCTAGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: VGVFLEVLHLLMVVKFRGVSRCV*RWLGCL
Trigger: CAAGCAGCCTAGCCACCTGCAGACGCACCTGCTGAC...CCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCGAATGGCTTGCTGCCTaGGTGCAGGTGCATATGACC +
Preference number: 4 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPEWLAA*VQVHMT
Trigger: GGTCATATGCACCTGCACGCAGGCAGCAAGCCATTC...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp CTTCAGTTAAACATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCCGCTGCTGTCCACACTaGTGTAGGTGTAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: LQLNMLLFLRSRLSHSSPRCCPH*CRCRRF
Trigger: AAAACGCCTACACCTACAGCAGTGTGGACAGCAGCG...GGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CCA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAACCTCAGCACTTATGGTaGCTCCGAAGAGCTCATTTT +
Preference number: 4 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKPQHLW*LRRAHF
Trigger: AAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGG...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CAGACCTGGATGAACTGTGTTGAAATGCACATTAGGGACATTCTTTCAAACGAGCCTCGCAGCCGCTGCTaGCCACCTCGGCTGGGGCCT +
Preference number: 4 (lower is better)
Translates to: QTWMNCVEMHIRDILSNEPRSRC*PPRLGP
Trigger: AGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGG...CTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCCTCGCAGCCGCTGCTaGCCACCTCGGCTGGGGCCT +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPPRSRC*PPRLGP
Trigger: AGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
56% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp GCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGAAAGAGCTTGCTGCAGTaGGGACACGAGTGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: ASAGVQMSLKARVGAEERKSLLQ*GHECGL
Trigger: CAAGCCACACTCGTGTCCCCACTGCAGCAAGCTCTT...TCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp CTACAGAGACCTAAAACCTGCCCTTGGGACTCGGAGCATGTTCTCCTCCACCCAAAGAGCTTGCTGCAGTaGGGACACGAGTGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: LQRPKTCPWDSEHVLLHPKSLLQ*GHECGL
Trigger: CAAGCCACACTCGTGTCCCCACTGCAGCAAGCTCTT...TGGGTGGAGGAGAACATGCTCCGAGTCCCAAGGGCAGGTTTTAGGTCTCTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp CGTGTAGTCTTGCTTCAGGAAGCTGAGACAGGAAGATGGTTGCGTTCTAGGCCAGTCGGTCTGTGTCCCTaGGTCCATGAAGCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: RVVLLQEAETGRWLRSRPVGLCP*VHEALH
Trigger: ATGGAGGGCTTCATGGACTCAGGGACACAGACCGAC...TGGCCTAGAACGCAACCATCTTCCTGTCTCAGCTTCCTGAAGCAAGACTACACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp CCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGACTGCCTTCTCAAACTTaGCCTTGGGTACCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: PESVQKRDKAWLKHSLPGLPSQT*PWVPAS
Trigger: TGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAG...TCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR TCA 90 bp GGCCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGAAGGGCCGCACATTCTaGTGCTTGAGCATGTGGTTT +
Preference number: 4 (lower is better)
Translates to: GQSRCRRETRPGSSILFLKGRTF*CLSMWF
Trigger: AAACCACATGCTCAAGCATCAGAATGTGCGGCCCTT...CAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCCATTTGGTCTAAAGATCCCTAACTCGCTGGACTCCTaGCACACGAAGCCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: GQLPARTVVESPFGLKIPNSLDS*HTKPCS
Trigger: AGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTT...AGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCCTTGGGATTTGTGGGCAGGGGTTTGGGTGCTTGCGAGCTTATGGATGGAGGTTGAGGGTTTGCTTCTaGACGAAGGTCTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: GLGICGQGFGCLRAYGWRLRVCF*TKVLKQ
Trigger: CTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAA...CCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCGGCTTCACAGGCGAGTaGACAATCATGTGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPGFTGE*TIMWVL
Trigger: CAAGACCCACATGATTGTGCACTCGCCTGTGAAGCC...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGATGCTTGACCTTCATGTaGCGGCTCAGGTTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: ASAGVQMSLKARVGAEERCLTFM*RLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCA...TCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCTGCTTGACCTTCATGTaGCGGCTCAGGTTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPCLTFM*RLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCA...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
3UTR CAA 72 bp CGGGAAAAAGAAGCTGTGTGTGGGAGAACTCATCTGTaGTCCCAGGCCTTCACAGGTAGATCCGGGCTACAG +
Preference number: 4 (lower is better)
Translates to: REKEAVCGRTHL*SQAFTGRSGLQ
Trigger: CTGTAGCCCGGATCTACCTGTGAAGGCCTGGGACAACAGATGAGTTCTCCCACACACAGCTTCTTTTTCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp GTAGGCGTTTTCCTCGAAGTCCTCCATCTCCTGATGGTTGTCAAGTTCAGAGGGGAGTGCTGCTTGAGGTaGTGGATCTGGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: VGVFLEVLHLLMVVKFRGECCLR*WIWLNS
Trigger: GGAGTTCAGCCAGATCCATCACCTCAAGCAGCACTC...CCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp GGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGTTGAGGGTTTGCTTCTaGACGAAGGTCTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: GQCRGSDVLKGQSRCRRELRVCF*TKVLKQ
Trigger: CTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAA...CTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCGGCCCTGGCGGTCCTaGCTCCCCCATGGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTRPWRS*LPHGCP
Trigger: GGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCTGGTGGGAGGCCAGGTaGCGCTTGAGCTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPWWEAR*RLSWVR
Trigger: CCTGACCCAGCTCAAGCGCCACCTGGCCTCCCACCA...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp GGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCCATTTGGTCTAAAGATCCCTTCCTTCACACCCTTGTaGGTGAGAGAGTGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: GQLPARTVVESPFGLKIPSFTPL*VRECCL
Trigger: CAAGCAGCACTCTCTCACCCACAAGGGTGTGAAGGA...AGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCAGCCGGTCCAGCTGTaGCTTCTTGTGGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPQPVQL*LLVALH
Trigger: GTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp GGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCCATTTGGTCTAAAGATCCCTGGTTTTGTAGCTGGCTaGGGTAGTGGAAGGACTTGT +
Preference number: 4 (lower is better)
Translates to: GQLPARTVVESPFGLKIPGFVAG*GSGRTC
Trigger: ACAAGTCCTTCCACTACCGCAGCCAGCTACAAAACC...AGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCGGCCGGACGCTGGTGTaGATCAGCATGTGGCGCTTC +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPGRTLV*ISMWRF
Trigger: GAAGCGCCACATGCTGATCCACACCAGCGTCCGGCC...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
3UTR CAA 72 bp GTAGTCTTGCTTCAGGAAGCTGAGACAGGAAGATGGTaGCGTTCTAGGCCAGACACAGGTAGACAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: VVLLQEAETGRW*RSRPDTGRQCE
Trigger: CTCACACTGTCTACCTGTGTCTGGCCTAGAACGCAACCATCTTCCTGTCTCAGCTTCCTGAAGCAAGACTAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
3UTR CAA 72 bp ACGGATGGTTGTGAGTCACCATGTGGTTGCTGGGATTaGAACTCAGAACCTTTGGAAGAGCAGTCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: TDGCESPCGCWD*NSEPLEEQSVL
Trigger: GAGCACCGACTGCTCTTCCAAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp GGCCAGCTCCCTGCAAGGACAGTAGTAGAGTCTCCATTTGGTCTAAAGATCCCTAAGTCCTCCATCTCCTaGTGGTTGTCAAGTTCAGAG +
Preference number: 4 (lower is better)
Translates to: GQLPARTVVESPFGLKIPKSSIS*WLSSSE
Trigger: CTCTGAACTTGACAACCATCAGGAGATGGAGGACTT...AGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp CAGACCTGGATGAACTGTGTTGAAATGCACATTAGGGACATTCTTTCAAACGAGCAGCGGCCACTCTCGTaGTTCACCTCATGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: QTWMNCVEMHIRDILSNEQRPLS*FTSWAL
Trigger: CAAGGCCCATGAGGTGAAGCACGAGAGTGGCCGCTG...CTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCAGCGGCCACTCTCGTaGTTCACCTCATGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPQRPLS*FTSWAL
Trigger: CAAGGCCCATGAGGTGAAGCACGAGAGTGGCCGCTG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATCTCGGCTGGGGCCTCTaGAGGGCCCGGGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINLGWGL*RARVFV
Trigger: GACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAG...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp CAGACCTGGATGAACTGTGTTGAAATGCACATTAGGGACATTCTTTCAAACGAGCCATGCCACACTCAGTaGACACGAAGGGCCGCACAT +
Preference number: 4 (lower is better)
Translates to: QTWMNCVEMHIRDILSNEPCHTQ*TRRAAH
Trigger: ATGTGCGGCCCTTCGTGTGCACTGAGTGTGGCATGG...CTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR GCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCCATGCCACACTCAGTaGACACGAAGGGCCGCACAT +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPPCHTQ*TRRAAH
Trigger: ATGTGCGGCCCTTCGTGTGCACTGAGTGTGGCATGG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
49% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTGGGGCCTCGTGCCCTaGTGTGTCAGCAGGTGCGTC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTWGLVP*CVSRCV
Trigger: GACGCACCTGCTGACACACCAGGGCACGAGGCCCCA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCATTCGACACAGACATaGCAGCGGCCACTCTCGTGC +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPHSTQT*QRPLSC
Trigger: GCACGAGAGTGGCCGCTGCCATGTCTGTGTCGAATG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp CAGACCTGGATGAACTGTGTTGAAATGCACATTAGGGACATTCTTTCAAACGAGGTACGGGCACTTGAATaGCTTGCTGCCTGCGTGCAG +
Preference number: 4 (lower is better)
Translates to: QTWMNCVEMHIRDILSNEVRALE*LAACVQ
Trigger: CTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTAC...CTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCGTACGGGCACTTGAATaGCTTGCTGCCTGCGTGCAG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPVRALE*LAACVQ
Trigger: CTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTAC...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
3UTR CAA 72 bp TCTGAAAAGGCCAGGTGTACACACATACGTGTAGTCTaGCTTCAGGAAGCTGAGACAGGAAGATGGTTGCGT +
Preference number: 4 (lower is better)
Translates to: SEKARCTHIRVV*LQEAETGRWLR
Trigger: ACGCAACCATCTTCCTGTCTCAGCTTCCTGAAGCAAGACTACACGTATGTGTGTACACCTGGCCTTTTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCAGCCCTGCTCTGGTTTaGCGAGTTCTGTCGTCGATG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPSPALV*RVLSSM
Trigger: CATCGACGACAGAACTCGTCAAACCAGAGCAGGGCT...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp CAAATTTCTATAGAATTAAGGATGACCTTGAACTTCTTAGCCTCCAGTCTCCACGTCAGCAGGTGCGTCTaGAGGTGGCTAGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: QISIELRMTLNFLASSLHVSRCV*RWLGCL
Trigger: CAAGCAGCCTAGCCACCTGCAGACGCACCTGCTGAC...GTGGAGACTGGAGGCTAAGAAGTTCAAGGTCATCCTTAATTCTATAGAAATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCTGAGTGCGCCATGCTaGTGTCAATCCTGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPLSAPC*CQSCSV
Trigger: GACAGAGCAGGATTGACAGCAGCATGGCGCACTCAG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCTCCTGAGTGCGCCATaGTGCTGTCAATCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPLLSAP*CCQSCS
Trigger: AGAGCAGGATTGACAGCAGCATGGCGCACTCAGGAG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCATAGATGTCCGGCCCTaGCGGTCCTGGCTCCCCCAT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTIDVRP*RSWLPH
Trigger: ATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTAT...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCATCCCGGGCTGGATCTaGGAAAGGAGGATCGAATGG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPIPGWI*ERRIEW
Trigger: CCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGAT...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCAGGTAGTGCCATGCTaGGCTCGGGGAAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTQVVPC*ARGSHP
Trigger: GGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCTCAGGATTGCTCAATaGGGCCAGGTGGGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTLRIAQ*GQVGRL
Trigger: GAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCACTGCCAGCGTTTCTaGCGGTCACCCGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTHCQRF*RSPAST
Trigger: AGTGGAGGCGGGTGACCGCCAGAAACGCTGGCAGTG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCAAGAGCTTGCTGCAGTaGGGACACGAGTGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPKSLLQ*GHECGL
Trigger: CAAGCCACACTCGTGTCCCCACTGCAGCAAGCTCTT...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATTGTTGGCCTGCAGCGTaGACTCCCGGCCACAGACCT +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINCWPAA*TPGHRP
Trigger: AGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACA...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCTCTCTCCAGACCTaGGCCCACCTCATTGACGTC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTPSLQT*AHLIDV
Trigger: GACGTCAATGAGGTGGGCTCAGGTCTGGAGAGAGGG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGTCCAGGTAGTGCCATaGTGGGCTCGGGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTVQVVP*WARGSH
Trigger: ATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGAC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGTCAGCAGGTGCGTCTaGAGGTGGCTAGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTVSRCV*RWLGCL
Trigger: CAAGCAGCCTAGCCACCTGCAGACGCACCTGCTGAC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCGGCTTCACAGGCGAGTaGACAATCATGTGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPGFTGE*TIMWVL
Trigger: CAAGACCCACATGATTGTGCACTCGCCTGTGAAGCC...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTCCTGCTCTGTCCACTaGGCACAGCCCACCCACCTT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTSCSVH*AQPTHL
Trigger: AAGGTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCAGCCTCGAACTCGCTaGACTCCTGCCACACGAAGC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTQPRTR*TPATRS
Trigger: GCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATTGTGGCGCTCCACTGTaGAACCCGCCGTGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINCGAPL*NPPCQP
Trigger: AGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACA...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGACACGAGTGTGGCTTaGTGCCGTTGTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINDTSVA*CRCGPG
Trigger: TCCTGGGCCACAACGGCATCAAGCCACACTCGTGTC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCGCACACCTTGCACTTaGACGGCTTCACAGGCGAGT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTRTPCT*TASQAS
Trigger: ACTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTCGCACATGCGACACTaGCAGCGTTTCTGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTSHMRH*QRFWRS
Trigger: TGACCGCCAGAAACGCTGGCAGTGTCGCATGTGCGA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp CAGACCTGGATGAACTGTGTTGAAATGCACATTAGGGACATTCTTTCAAACGAGGGTTTTGTAGCTGGCTaGGGTAGTGGAAGGACTTGT +
Preference number: 4 (lower is better)
Translates to: QTWMNCVEMHIRDILSNEGFVAG*GSGRTC
Trigger: ACAAGTCCTTCCACTACCGCAGCCAGCTACAAAACC...CTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGTGGGGACACGAGTGTaGCTTGATGCCGTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINVGTRV*LDAVVA
Trigger: GGCCACAACGGCATCAAGCCACACTCGTGTCCCCAC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
3UTR CAA 72 bp ACAGGTTTTATGTTGCAGATCCAAGAGTGGGAATATTaGGAAACAAGTCAGGGATGGCAGTGCATGCCCGAA +
Preference number: 4 (lower is better)
Translates to: TGFMLQIQEWEY*ETSQGWQCMPE
Trigger: TTCGGGCATGCACTGCCATCCCTGACTTGTTTCCAAATATTCCCACTCTTGGATCTGCAACATAAAACCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR TCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGTCGGTCTGTGTCCCTaGGTCCATGAAGCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINVGLCP*VHEALH
Trigger: ATGGAGGGCTTCATGGACTCAGGGACACAGACCGAC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGAAGAGCTCATTTTCTaGGACCAGGCCCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTEELIF*DQAQHS
Trigger: GCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGAGTGCTGCTTGAGGTaGTGGATCTGGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTECCLR*WIWLNS
Trigger: GGAGTTCAGCCAGATCCATCACCTCAAGCAGCACTC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATAGCAGTACGGGCACTTaGATGGCTTGCTGCCTGCGT +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINSSTGT*MACCLR
Trigger: ACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCT...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATAACTCGCTGGACTCCTaGCACACGAAGCCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINNSLDS*HTKPCS
Trigger: AGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTT...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGGCTTCACCTCCGAGTaGAGCAGCATGTGGCGTTTG +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINGFTSE*SSMWRL
Trigger: CAAACGCCACATGCTGCTGCACTCGGAGGTGAAGCC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGG +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTMSMTP*LTFMCR
Trigger: CCGGCACATGAAGGTCAAGCACGGCGTCATGGACAT...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGGCCATGTCCAGCTCTaGCCTTGGAGTTCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINGHVQL*PWSSRQ
Trigger: TTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGGTTGTACATGCGGTTaGAGGACTTCCCGCACACCT +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINGCTCG*RTSRTP
Trigger: AGGTGTGCGGGAAGTCCTTCAACCGCATGTACAACC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTGCCACACGAAGCCCTaGTCTGGTTTGACGAGTTCT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTCHTKP*SGLTSS
Trigger: AGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGAATGGCTTGCTGCCTaGGTGCAGGTGCATATGACC +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINEWLAA*VQVHMT
Trigger: GGTCATATGCACCTGCACGCAGGCAGCAAGCCATTC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTGCTTGACCTTCATGTaGCGGCTCAGGTTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTCLTFM*RLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTCCTTCACACCCTTGTaGGTGAGAGAGTGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTSFTPL*VRECCL
Trigger: CAAGCAGCACTCTCTCACCCACAAGGGTGTGAAGGA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATCTGCCTTCTCAAACTTaGCCTTGGGTACCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINLPSQT*PWVPAS
Trigger: TGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAG...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR TCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCAAGGGCCGCACATTCTaGTGCTTGAGCATGTGGTTT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTKGRTF*CLSMWF
Trigger: AAACCACATGCTCAAGCATCAGAATGTGCGGCCCTT...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGGTTTTGTAGCTGGCTaGGGTAGTGGAAGGACTTGT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTGFVAG*GSGRTC
Trigger: ACAAGTCCTTCCACTACCGCAGCCAGCTACAAAACC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTCGTCGATGTCATGTTaGGAGGCTCAGGATTGCTCA +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTSSMSC*EAQDCS
Trigger: TGAGCAATCCTGAGCCTCCCAACATGACATCGACGA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
3UTR CAA 72 bp ACTATCTATCGCTTGCCTCTAGCCACAGGTTTTATGTaGCAGATCCAAGAGTGGGAATATTTGGAAACAAGT +
Preference number: 4 (lower is better)
Translates to: TIYRLPLATGFM*QIQEWEYLETS
Trigger: ACTTGTTTCCAAATATTCCCACTCTTGGATCTGCAACATAAAACCTGTGGCTAGAGGCAAGCGATAGATAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR GCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTTGAGGGTTTGCTTCTaGACGAAGGTCTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTLRVCF*TKVLKQ
Trigger: CTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CCA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCTCAGCACTTATGGTaGCTCCGAAGAGCTCATTTT +
Preference number: 4 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTPQHLW*LRRAHF
Trigger: AAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS GCA 90 bp TTGCGGCTGAAGGCGCTGAGGTCGATCATCTTGACGGCACTGCTCTaGACCAGGGCCTCGCAGCCGCTGCTGGCCACCTCGGCTGGGGCC +
Preference number: 5 (lower is better)
Translates to: LRLKALRSIILTALL*TRASQPLLATSAGA
Trigger: GGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAGCGCCTTCAGCCGCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp GGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGCCCTTGAGGTTGAACTaGCTGGAGCAGTACGGGCAC +
Preference number: 5 (lower is better)
Translates to: GAALSMWVSPCALPAHSAPLRLN*LEQYGH
Trigger: GTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGG...CGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCTCCCCCTCTTGCGGAGTGTCCGGGGCTaGCGGCTGAAGGCGCTGAGG +
Preference number: 5 (lower is better)
Translates to: GLSHCESTPSASAGLPLLRSVRG*RLKALR
Trigger: CCTCAGCGCCTTCAGCCGCAAGCCCCGGACACTCCG...CAAGAGGGGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CAA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCATTGGGAGGCTCAGGATaGCTCAATGGGGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: ALRQAGPGLGPHACLHGALGGSG*LNGARW
Trigger: CCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAA...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGCCTGCTCCATCATGGGGTCTaGGCTGTCCAGGCTGATGTC +
Preference number: 5 (lower is better)
Translates to: SPQYVGLTLRPPRPLSGLLHHGV*AVQADV
Trigger: GACATCAGCCTGGACAGCCAAGACCCCATGATGGAG...CAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS GCA 90 bp ACCTTGGGTACCAGCCTCACAGGGGGCCGTGTCTTCCTCCGCGTGTaGTTCTCAAAGGCCGCCTCTACCTCCAGCACCTCCTCTTCCGGG +
Preference number: 5 (lower is better)
Translates to: TLGTSLTGGRVFLRV*FSKAASTSSTSSSG
Trigger: CCCGGAAGAGGAGGTGCTGGAGGTAGAGGCGGCCTTTGAGAAGCACACGCGGAGGAAGACACGGCCCCCTGTGAGGCTGGTACCCAAGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 90 bp TCGAATGGGGCCATGTCCAGCTCTGGCCTTGGAGTTCTCGGCAAGTaGCGGAGTGTCCGGGGCTTGCGGCTGAAGGCGCTGAGGTCGATC +
Preference number: 5 (lower is better)
Translates to: SNGAMSSSGLGVLGK*RSVRGLRLKALRSI
Trigger: GATCGACCTCAGCGCCTTCAGCCGCAAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp CAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCATTGGGAGGCTCAGGATaGCTCAATGGGGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: QPLLVPEMSPRPSLPAGSLGGSG*LNGARW
Trigger: CCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAA...TGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCCCGCCCACTCAGCGGCCTGGTCGTCGATGTCATGTaGGGAGGCTCAGGATTGCTC +
Preference number: 5 (lower is better)
Translates to: SPQYVGLTLRPPRPLSGLVVDVM*GGSGLL
Trigger: GAGCAATCCTGAGCCTCCCAACATGACATCGACGAC...CAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCGACAGGCAGGGCCAGGGAACTCCTTCACACCCTaGTGGGTGAGAGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: EGALEAGLPSALRQAGPGNSFTP*WVRECC
Trigger: GCAGCACTCTCTCACCCACAAGGGTGTGAAGGAGTT...CCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TCAGCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGACCGCACACCTTGCACTaGAACGGCTTCACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: SALRQAGPGLGPHACLHGPHTLH*NGFTGE
Trigger: CTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCGG...TCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTCCGCACACCTTGCACTaGAACGGCTTCACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPPHTLH*NGFTGE
Trigger: CTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCGG...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCGACTTCCCGCACACCTaGCACTTGAACGGCTTCACA +
Preference number: 5 (lower is better)
Translates to: WSQRCHPDPPSPLAQGAADFPHT*HLNGFT
Trigger: TGTGAAGCCGTTCAAGTGCAAGGTGTGCGGGAAGTC...GGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GCTCTGCAGGCCAGCTGGGAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCCTCCATCATGGGGTCTaGGCTGTCCAGGCTGATGTC +
Preference number: 5 (lower is better)
Translates to: ALQASWEGALEAGLPSALLHHGV*AVQADV
Trigger: GACATCAGCCTGGACAGCCAAGACCCCATGATGGAG...GAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS CCA 90 bp GGCTGGATCTGGGAAAGGAGGATCGAATGGGGCCATGTCCAGCTCTaGCCTTGGAGTTCTCGGCAAGTGCCGGAGTGTCCGGGGCTTGCG +
Preference number: 5 (lower is better)
Translates to: GWIWERRIEWGHVQL*PWSSRQVPECPGLA
Trigger: CGCAAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGATCCTCCTTTCCCAGATCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp CTCGGGGAAGCCATCCCGGGCTGGATCTGGGAAAGGAGGATCGAATaGGGCCATGTCCAGCTCTGGCCTTGGAGTTCTCGGCAAGTGCCG +
Preference number: 5 (lower is better)
Translates to: LGEAIPGWIWERRIE*GHVQLWPWSSRQVP
Trigger: CGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGATGGCTTCCCCGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp CTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGGTCGTCGATGTCATGTaGGGAGGCTCAGGATTGCTC +
Preference number: 5 (lower is better)
Translates to: LGPRDVTPTLPPRWLKEPVVDVM*GGSGLL
Trigger: GAGCAATCCTGAGCCTCCCAACATGACATCGACGAC...CGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GCTCTGCAGGCCAGCTGGGAGGGTGCTCTGGAGGCTGGACTCCCCTCAGCTCTCAACTCCTTCACACCCTaGTGGGTGAGAGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: ALQASWEGALEAGLPSALNSFTP*WVRECC
Trigger: GCAGCACTCTCTCACCCACAAGGGTGTGAAGGAGTT...GAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCGAGCAGTACGGGCACTaGAATGGCTTGCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSEQYGH*NGLLPA
Trigger: CGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTC...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp ATTCCCCCTGCCCACGCACAGCAGCAGGCCAAGGAGAACCAGATGCGGACCTCCCTGAGGTCGATCATCTaGACGGCACTGCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: IPPAHAQQQAKENQMRTSLRSII*TALLCT
Trigger: GGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAG...GGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGAGGTGGCTTGGGGAAGAGGACACGAGTGTGGCTaGATGCCGTTGTGGCCCAGG +
Preference number: 5 (lower is better)
Translates to: SSILFLESASAPEVAWGRGHECG*MPLWPR
Trigger: CCTGGGCCACAACGGCATCAAGCCACACTCGTGTCC...TCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTGGACACGAGTGTGGCTaGATGCCGTTGTGGCCCAGG +
Preference number: 5 (lower is better)
Translates to: WAVAWFWAAEGQPSVCGSGHECG*MPLWPR
Trigger: CCTGGGCCACAACGGCATCAAGCCACACTCGTGTCC...AGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TCCCAGAGATGTCACCCCGACCCTCCCTCCCCGCTGGCTCAAGGAGCCGCCATCCCACAGACCTCACACTaGAACTCCTTCACACCCTTG +
Preference number: 5 (lower is better)
Translates to: SQRCHPDPPSPLAQGAAIPQTSH*NSFTPL
Trigger: CAAGGGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGG...GATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GCTCTCCGACAGGCAGGGCCAGGGCTAGGGCCGCATGCATGCCTGCATGGAGCACCACAGACCTCACACTaGAACTCCTTCACACCCTTG +
Preference number: 5 (lower is better)
Translates to: ALRQAGPGLGPHACLHGAPQTSH*NSFTPL
Trigger: CAAGGGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGG...TGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTGACTTCCCGCACACCTaGCACTTGAACGGCTTCACA +
Preference number: 5 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPDFPHT*HLNGFT
Trigger: TGTGAAGCCGTTCAAGTGCAAGGTGTGCGGGAAGTC...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACACCTGCTTGAGGTTGTACATGCGGTaGAAGGACTTCCCGCACACC +
Preference number: 5 (lower is better)
Translates to: FLRSRLSHSSPTPHDTCLRLYMR*KDFPHT
Trigger: GGTGTGCGGGAAGTCCTTCAACCGCATGTACAACCT...CAAGCAGGTGTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGAGCAGTACGGGCACTaGAATGGCTTGCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCEQYGH*NGLLPA
Trigger: CGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTC...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCTCCCTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTC +
Preference number: 5 (lower is better)
Translates to: GLGAVTLRINTLCLSWSPSMTPC*TFMCRL
Trigger: GAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGA...GGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS TCA 90 bp GGCGGTCACCCGCCTCCACTAGGTAGGAGTCATCGATCTGCACATTaGTGTCCAGCCGGTCCAGCTGTGCCTTCTTGTGGCGCTCCACTG +
Preference number: 5 (lower is better)
Translates to: GGHPPPLGRSHRSAH*CPAGPAVPSCGAPL
Trigger: CAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTGCAGATCGATGACTCCTACCTAGTGGAGGCGGGTGACCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp ATCTGGGAAAGGAGGATCGAATGGGGCCATGTCCAGCTCTGGCCTTaGAGTTCTCGGCAAGTGCCGGAGTGTCCGGGGCTTGCGGCTGAA +
Preference number: 5 (lower is better)
Translates to: IWERRIEWGHVQLWP*SSRQVPECPGLAAE
Trigger: TTCAGCCGCAAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGATCCTCCTTTCCCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp TCGATCTGCACATTGATGTCCAGCCGGTCCAGCTGTGCCTTCTTGTaGCGCTCCACTGTGGAACCCGCCGTGTCAGCCTCGAACTCGCTG +
Preference number: 5 (lower is better)
Translates to: SICTLMSSRSSCAFL*RSTVEPAVSASNSL
Trigger: CAGCGAGTTCGAGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTGCAGATCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGTTGGGAGGCTCAGGATaGCTCAATGGGGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQLGGSG*LNGARW
Trigger: CCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAA...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCTCCAGCTGTGCCTTCTaGTGGCGCTCCACTGTGGAA +
Preference number: 5 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCSSCAF*WRSTVE
Trigger: TTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGA...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp ACCAGGGTGGGGGTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAACCGCACACCTTGCACTaGAACGGCTTCACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: TRVGVGSVGQCRGSDVLKPHTLH*NGFTGE
Trigger: CTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCGG...TTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp ATGTTGCTCTTCCTCCGGAGCCGGCTGAGCCACAGCTCACCCACTCCCCACGACAGGTTGTACATGCGGTaGAAGGACTTCCCGCACACC +
Preference number: 5 (lower is better)
Translates to: MLLFLRSRLSHSSPTPHDRLYMR*KDFPHT
Trigger: GGTGTGCGGGAAGTCCTTCAACCGCATGTACAACCT...GTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS GCA 90 bp GCCGTGTCAGCCTCGAACTCGCTGGACTCCTGCCACACGAAGCCCTaGTCTGGTTTGACGAGTTCTGTCGTCGATGTCATGTTGGGAGGC +
Preference number: 5 (lower is better)
Translates to: AVSASNSLDSCHTKP*SGLTSSVVDVMLGG
Trigger: GCCTCCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTGACACGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 90 bp TCCACTGTGGAACCCGCCGTGTCAGCCTCGAACTCGCTGGACTCCTaGCACACGAAGCCCTGCTCTGGTTTGACGAGTTCTGTCGTCGAT +
Preference number: 5 (lower is better)
Translates to: STVEPAVSASNSLDS*HTKPCSGLTSSVVD
Trigger: ATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTGACACGGCGGGTTCCACAGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp CTGCTGTCAATCCTGCTCTGTCCACTGCGCACAGCCCACCCACCTTaGCTGTCCAGGCTGATGTCCATGACGCCGTGCTTGACCTTCATG +
Preference number: 5 (lower is better)
Translates to: LLSILLCPLRTAHPP*LSRLMSMTPCLTFM
Trigger: CATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGATTGACAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp GTGGGCAGTGTCGGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGCTGAGGTCGATCATCTaGACGGCACTGCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: VGSVGQCRGSDVLKGQSRLRSII*TALLCT
Trigger: GGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAG...CCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTTCCAGCTGTGCCTTCTaGTGGCGCTCCACTGTGGAA +
Preference number: 5 (lower is better)
Translates to: WAVAWFWAAEGQPSVCGSSSCAF*WRSTVE
Trigger: TTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGA...AGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGGCCTGGCTTGGGGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCATCGATCTGCACATaGATGTCCAGCCGGTCCAGC +
Preference number: 5 (lower is better)
Translates to: RPGLGAVTLRINTLCLSWSSICT*MSSRSS
Trigger: GCTGGACCGGCTGGACATCAATGTGCAGATCGATGA...CCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS-3UTR CAA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGTCATCGATCTGCACATaGATGTCCAGCCGGTCCAGC +
Preference number: 5 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLSSICT*MSSRSS
Trigger: GCTGGACCGGCTGGACATCAATGTGCAGATCGATGA...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TCCCCTGAGGACAGCCACTCTTGGTCCCAGAGATGTCACCCCGACCCTCCCTCCCCACAGACCTCACACTaGAACTCCTTCACACCCTTG +
Preference number: 5 (lower is better)
Translates to: SPEDSHSWSQRCHPDPPSPQTSH*NSFTPL
Trigger: CAAGGGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGG...GGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCGCGCCTGAGGTTGTACATGCGGTaGAAGGACTTCCCGCACACC +
Preference number: 5 (lower is better)
Translates to: ERQGLAQAFSSWRAPPRLRLYMR*KDFPHT
Trigger: GGTGTGCGGGAAGTCCTTCAACCGCATGTACAACCT...CAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp TGGGCAGTAGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCCCTTGAGGTTGAACTaGCTGGAGCAGTACGGGCAC +
Preference number: 5 (lower is better)
Translates to: WAVAWFWAAEGQPSVCGSPLRLN*LEQYGH
Trigger: GTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGG...AGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCGCCCTAGGTTTCCCTTGAGGTaGAACTTGCTGGAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: GSGLQRGSPQYVGLTLRPRFPLR*NLLEQY
Trigger: GTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCT...AGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGCTTGGTTCTGGGCTGCAGAGGGGCAGCCCTCAGTATGTGGGTCTCACCCTGCCGGCTCAGGTTTCCCTaGAGGTTGAACTTGCTGGAG +
Preference number: 5 (lower is better)
Translates to: SLVLGCRGAALSMWVSPCRLRFP*RLNLLE
Trigger: CTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCG...GCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS GCA 90 bp ACAGCCCACCCACCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: TAHPPWLSRLMSMTP*LTFMCRLRFPLRLN
Trigger: GTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGTGGGTGGGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CCA 90 bp GTCAGCCTCGAACTCGCTGGACTCCTGCCACACGAAGCCCTGCTCTaGTTTGACGAGTTCTGTCGTCGATGTCATGTTGGGAGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: VSLELAGLLPHEALL*FDEFCRRCHVGRLR
Trigger: CCTGAGCCTCCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGGTCGTCGATGTCATGTaGGGAGGCTCAGGATTGCTC +
Preference number: 5 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQVVDVM*GGSGLL
Trigger: GAGCAATCCTGAGCCTCCCAACATGACATCGACGAC...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp CAGGGCCCCTCAGGCATGGCTGCTTTCGGAAAGGGAGGCAGGAAGTACACACAGGACTTCCCGCACACCTaGCACTTGAACGGCTTCACA +
Preference number: 5 (lower is better)
Translates to: QGPSGMAAFGKGGRKYTQDFPHT*HLNGFT
Trigger: TGTGAAGCCGTTCAAGTGCAAGGTGTGCGGGAAGTC...CTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGGCTGTCACACTGCGAATCAACACCCTCTGCCTCAGCTGGTCTCCCCCTCTTGCGGCTCAGGTTTCCCTaGAGGTTGAACTTGCTGGAG +
Preference number: 5 (lower is better)
Translates to: GLSHCESTPSASAGLPLLRLRFP*RLNLLE
Trigger: CTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCG...CAAGAGGGGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS TCA 90 bp ATAGAAGGCCTCAGCACTTATGGTGGCTCCGAAGAGCTCATTTTCTaGGACCAGGCCCAGCACAGCCGCCTGAGCCAAGGACAGCACCAC +
Preference number: 5 (lower is better)
Translates to: IEGLSTYGGSEELIF*DQAQHSRLSQGQHH
Trigger: GTGGTGCTGTCCTTGGCTCAGGCGGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS TCA 90 bp CCTCGAACTCGCTGGACTCCTGCCACACGAAGCCCTGCTCTGGTTTaGCGAGTTCTGTCGTCGATGTCATGTTGGGAGGCTCAGGATTGC +
Preference number: 5 (lower is better)
Translates to: PRTRWTPATRSPALV*RVLSSMSCWEAQDC
Trigger: GCAATCCTGAGCCTCCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 90 bp CAAAACTACATTCAGTGGGCAAAGTCTCTGGTCCAGGTAGTGCCATaGTGGGCTCGGGGAAGCCATCCCGGGCTGGATCTGGGAAAGGAG +
Preference number: 5 (lower is better)
Translates to: QNYIQWAKSLVQVVP*WARGSHPGLDLGKE
Trigger: CTCCTTTCCCAGATCCAGCCCGGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGACCAGAGACTTTGCCCACTGAATGTAGTTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp AACTACATTCAGTGGGCAAAGTCTCTGGTCCAGGTAGTGCCATGCTaGGCTCGGGGAAGCCATCCCGGGCTGGATCTGGGAAAGGAGGAT +
Preference number: 5 (lower is better)
Translates to: NYIQWAKSLVQVVPC*ARGSHPGLDLGKED
Trigger: ATCCTCCTTTCCCAGATCCAGCCCGGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGACCAGAGACTTTGCCCACTGAATGTAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp GGCCAGAGTCGGTGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGTCCAGCTGTGCCTTCTaGTGGCGCTCCACTGTGGAA +
Preference number: 5 (lower is better)
Translates to: GQSRCRRETRPGSSILFLSSCAF*WRSTVE
Trigger: TTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGA...CAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTC +
Preference number: 5 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPSMTPC*TFMCRL
Trigger: GAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGA...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS GCA 90 bp TGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTTGACCTTCATGTaGCGGCTCAGGTTTCCCTTGAGGTTGAACTTGCTGGAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: WLSRLMSMTPCLTFM*RLRFPLRLNLLEQY
Trigger: GTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 90 bp TCCATCATGGGGTCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: SIMGSWLSRLMSMTP*LTFMCRLRFPLRLN
Trigger: GTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGACCCCATGATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS GCA 90 bp GTGCTAAGCATCCCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: VLSIPWLSRLMSMTP*LTFMCRLRFPLRLN
Trigger: GTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGATGCTTAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS CCA 90 bp GCATACGAGCATCCAGCTGCTCTAGCAGCAGTGCTAAGCATCCCTTaGCTGTCCAGGCTGATGTCCATGACGCCGTGCTTGACCTTCATG +
Preference number: 5 (lower is better)
Translates to: AYEHPAALAAVLSIP*LSRLMSMTPCLTFM
Trigger: CATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGATGCTTAGCACTGCTGCTAGAGCAGCTGGATGCTCGTATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp ACCAAAACCATTCTAGTTCCCCTCTTCCCACGGGTGGTCTTCCTTGGCTTCCCCCTGAGGTCGATCATCTaGACGGCACTGCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: TKTILVPLFPRVVFLGFPLRSII*TALLCT
Trigger: GGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAG...GGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGCGGCTCAGGTTTCCCTaGAGGTTGAACTTGCTGGAG +
Preference number: 5 (lower is better)
Translates to: GQCRGSDVLKGQSRCRRERLRFP*RLNLLE
Trigger: CTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCG...CTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS CCA 90 bp TCAATTCTGGCCCTAGGTCTGGATAGAAGGCCTCAGCACTTATGGTaGCTCCGAAGAGCTCATTTTCTGAGACCAGGCCCAGCACAGCCG +
Preference number: 5 (lower is better)
Translates to: SILALGLDRRPQHLW*LRRAHFLRPGPAQP
Trigger: CGGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTATCCAGACCTAGGGCCAGAATTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp GTCGATGTCATGTTGGGAGGCTCAGGATTGCTCAATGGGGCCAGGTaGGGCGGCTCAAAACTACATTCAGTGGGCAAAGTCTCTGGTCCA +
Preference number: 5 (lower is better)
Translates to: VDVMLGGSGLLNGAR*GGSKLHSVGKVSGP
Trigger: TGGACCAGAGACTTTGCCCACTGAATGTAGTTTTGAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAACATGACATCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp CTACAGAGACCTAAAACCTGCCCTTGGGACTCGGAGCATGTTCTCCTCCACCCATCATCGATCTGCACATaGATGTCCAGCCGGTCCAGC +
Preference number: 5 (lower is better)
Translates to: LQRPKTCPWDSEHVLLHPSSICT*MSSRSS
Trigger: GCTGGACCGGCTGGACATCAATGTGCAGATCGATGA...TGGGTGGAGGAGAACATGCTCCGAGTCCCAAGGGCAGGTTTTAGGTCTCTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR CAA 90 bp GCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGAAACTCCTTCACACCCTaGTGGGTGAGAGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: ASAGVQMSLKARVGAEERNSFTP*WVRECC
Trigger: GCAGCACTCTCTCACCCACAAGGGTGTGAAGGAGTT...TCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS CCA 90 bp CAGTCAATTCTGGCCCTAGGTCTGGATAGAAGGCCTCAGCACTTATaGTGGCTCCGAAGAGCTCATTTTCTGAGACCAGGCCCAGCACAG +
Preference number: 5 (lower is better)
Translates to: QSILALGLDRRPQHL*WLRRAHFLRPGPAQ
Trigger: CTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTATCCAGACCTAGGGCCAGAATTGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 90 bp GAGTTCTGTCGTCGATGTCATGTTGGGAGGCTCAGGATTGCTCAATaGGGCCAGGTGGGGCGGCTCAAAACTACATTCAGTGGGCAAAGT +
Preference number: 5 (lower is better)
Translates to: EFCRRCHVGRLRIAQ*GQVGRLKTTFSGQS
Trigger: ACTTTGCCCACTGAATGTAGTTTTGAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAACATGACATCGACGACAGAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGCAGAAGAGAGACAAGGCCTGGCTCAAGCATTCTCTTCCTGGAGAGCGCCTCCAGGTTTCCCTTGAGGTaGAACTTGCTGGAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: CRRETRPGSSILFLESASRFPLR*NLLEQY
Trigger: GTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCT...GGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp GGCCAGTGCAGGGGTTCAGATGTCCTTAAAGGCCAGAGTCGGTGCAGAAGAGAGAGGTTTCCCTTGAGGTaGAACTTGCTGGAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: GQCRGSDVLKGQSRCRRERFPLR*NLLEQY
Trigger: GTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCT...CTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
CDS-3UTR CAA 90 bp AGTCAGAAGAGGGCATTGGAGACCCTAGAACTAGAGTTAGAGACAGTTGCTGAGTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTC +
Preference number: 5 (lower is better)
Translates to: SQKRALETLELELETVAESMTPC*TFMCRL
Trigger: GAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGA...CTCAGCAACTGTCTCTAACTCTAGTTCTAGGGTCTCCAATGCCCTCTTCTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR CAA 90 bp GTCCTGCTGGAGATTAGGGTAACTTTGATAATGCAGTCAGTTCTCTGTATCTGGGAGCAGTACGGGCACTaGAATGGCTTGCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: VLLEIRVTLIMQSVLCIWEQYGH*NGLLPA
Trigger: CGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTC...CCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCTAATCTCCAGCAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR CAA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCTTGGGAGGCTCAGGATaGCTCAATGGGGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPLGGSG*LNGARW
Trigger: CCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAA...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCCCTTGAGGTTGAACTaGCTGGAGCAGTACGGGCAC +
Preference number: 5 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPPLRLN*LEQYGH
Trigger: GTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
49% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCAGGTTGTACATGCGGTaGAAGGACTTCCCGCACACC +
Preference number: 5 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPRLYMR*KDFPHT
Trigger: GGTGTGCGGGAAGTCCTTCAACCGCATGTACAACCT...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp ATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCCCGGCTCAGGTTTCCCTaGAGGTTGAACTTGCTGGAG +
Preference number: 5 (lower is better)
Translates to: IIVLVSPRRSLEEDINTPRLRFP*RLNLLE
Trigger: CTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCG...GGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAAT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATGGACACGAGTGTGGCTaGATGCCGTTGTGGCCCAGG +
Preference number: 5 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINGHECG*MPLWPR
Trigger: CCTGGGCCACAACGGCATCAAGCCACACTCGTGTCC...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGAGCAGTACGGGCACTaGAATGGCTTGCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTEQYGH*NGLLPA
Trigger: CGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp CAAATTTCTATAGAATTAAGGATGACCTTGAACTTCTTAGCCTCCAGTCTCCACCCCTTGAGGTTGAACTaGCTGGAGCAGTACGGGCAC +
Preference number: 5 (lower is better)
Translates to: QISIELRMTLNFLASSLHPLRLN*LEQYGH
Trigger: GTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGG...GTGGAGACTGGAGGCTAAGAAGTTCAAGGTCATCCTTAATTCTATAGAAATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164056.9
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCTGAGGTCGATCATCTaGACGGCACTGCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTLRSII*TALLCT
Trigger: GGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCTCCAGCTGTGCCTTCTaGTGGCGCTCCACTGTGGAA +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTSSCAF*WRSTVE
Trigger: TTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGA...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATCCGCACACCTTGCACTaGAACGGCTTCACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINPHTLH*NGFTGE
Trigger: CTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCGG...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTC +
Preference number: 5 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINSMTPC*TFMCRL
Trigger: GAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGA...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATCCTGAGCCCACCTCATaGACGTCTCAGCCTTGGCCA +
Preference number: 5 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINPEPTS*TSQPWP
Trigger: TGGCCAAGGCTGAGACGTCAATGAGGTGGGCTCAGG...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGTCGTCGATGTCATGTaGGGAGGCTCAGGATTGCTC +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTVVDVM*GGSGLL
Trigger: GAGCAATCCTGAGCCTCCCAACATGACATCGACGAC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCGACTTCCCGCACACCTaGCACTTGAACGGCTTCACA +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTDFPHT*HLNGFT
Trigger: TGTGAAGCCGTTCAAGTGCAAGGTGTGCGGGAAGTC...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATTCATCGATCTGCACATaGATGTCCAGCCGGTCCAGC +
Preference number: 5 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINSSICT*MSSRSS
Trigger: GCTGGACCGGCTGGACATCAATGTGCAGATCGATGA...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TGTTTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATAACTCCTTCACACCCTaGTGGGTGAGAGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: CFIIVLVSPRRSLEEDINNSFTP*WVRECC
Trigger: GCAGCACTCTCTCACCCACAAGGGTGTGAAGGAGTT...ATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCCCACAGACCTCACACTaGAACTCCTTCACACCCTTG +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTPQTSH*NSFTPL
Trigger: CAAGGGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGG...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS-3UTR CAA 90 bp TTTATTATTGTTTTAGTGAGCCCACGTAGGTCCTTGGAAGAAGACATAAATACCAGGTTTCCCTTGAGGTaGAACTTGCTGGAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: FIIVLVSPRRSLEEDINTRFPLR*NLLEQY
Trigger: GTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCT...GGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CAA 90 bp CGGAGTGTCCGGGGCTTGCGGCTGAAGGCGCTGAGGTCGATCATCTaGACGGCACTGCTCTGCACCAGGGCCTCGCAGCCGCTGCTGGCC +
Preference number: 6 (lower is better)
Translates to: RSVRGLRLKALRSII*TALLCTRASQPLLA
Trigger: GGCCAGCAGCGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAGCGCCTTCAGCCGCAAGCCCCGGACACTCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp CTCGCAGCCGCTGCTGGCCACCTCGGCTGGGGCCTCTaGAGGGCCCGGGTCTTTGTCATCACCAGGCACAGA +
Preference number: 6 (lower is better)
Translates to: LAAAAGHLGWGL*RARVFVITRHR
Trigger: TCTGTGCCTGGTGATGACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp CGGGGCTTGCGGCTGAAGGCGCTGAGGTCGATCATCTaGACGGCACTGCTCTGCACCAGGGCCTCGCAGCCG +
Preference number: 6 (lower is better)
Translates to: RGLRLKALRSII*TALLCTRASQP
Trigger: CGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAGCGCCTTCAGCCGCAAGCCCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp AAGGCGCTGAGGTCGATCATCTTGACGGCACTGCTCTaGACCAGGGCCTCGCAGCCGCTGCTGGCCACCTCG +
Preference number: 6 (lower is better)
Translates to: KALRSIILTALL*TRASQPLLATS
Trigger: CGAGGTGGCCAGCAGCGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAGCGCCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp GCCATGTCCAGCTCTGGCCTTGGAGTTCTCGGCAAGTaGCGGAGTGTCCGGGGCTTGCGGCTGAAGGCGCTG +
Preference number: 6 (lower is better)
Translates to: AMSSSGLGVLGK*RSVRGLRLKAL
Trigger: CAGCGCCTTCAGCCGCAAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp GCCGGTCCAGCTGTGCCTTCTTGTGGCGCTCCACTGTaGAACCCGCCGTGTCAGCCTCGAACTCGCTGGACT +
Preference number: 6 (lower is better)
Translates to: AGPAVPSCGAPL*NPPCQPRTRWT
Trigger: AGTCCAGCGAGTTCGAGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp GCCACCTCGGCTGGGGCCTCTGCAGGGCCCGGGTCTTaGTCATCACCAGGCACAGACACCTCATACACCTCC +
Preference number: 6 (lower is better)
Translates to: ATSAGASAGPGS*SSPGTDTSYTS
Trigger: GGAGGTGTATGAGGTGTCTGTGCCTGGTGATGACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAGGTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp CATGCTGGGCTCGGGGAAGCCATCCCGGGCTGGATCTaGGAAAGGAGGATCGAATGGGGCCATGTCCAGCTC +
Preference number: 6 (lower is better)
Translates to: HAGLGEAIPGWI*ERRIEWGHVQL
Trigger: GAGCTGGACATGGCCCCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGATGGCTTCCCCGAGCCCAGCATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 90 bp AGCTCTGGCCTTGGAGTTCTCGGCAAGTGCCGGAGTGTCCGGGGCTaGCGGCTGAAGGCGCTGAGGTCGATCATCTTGACGGCACTGCTC +
Preference number: 6 (lower is better)
Translates to: SSGLGVLGKCRSVRG*RLKALRSIILTALL
Trigger: GAGCAGTGCCGTCAAGATGATCGACCTCAGCGCCTTCAGCCGCAAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp AGGAGACTCCTGAGTGCGCCATGCTGCTGTCAATCCTaGTCTGTCCACTGCGCACAGCCCACCCACCTTGGC +
Preference number: 6 (lower is better)
Translates to: RRLLSAPCCCQS*SVHCAQPTHLG
Trigger: GCCAAGGTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGATTGACAGCAGCATGGCGCACTCAGGAGTCTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CCA 72 bp TCGTCCATTACAGGCCAGCTGATAGATGTCCGGCCCTaGCGGTCCTGGCTCCCCCATGGCTGTCCCAGTCAA +
Preference number: 6 (lower is better)
Translates to: SSITGQLIDVRP*RSWLPHGCPSQ
Trigger: TTGACTGGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTATCAGCTGGCCTGTAATGGACGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp AGGAGGATCGAATGGGGCCATGTCCAGCTCTGGCCTTaGAGTTCTCGGCAAGTGCCGGAGTGTCCGGGGCTT +
Preference number: 6 (lower is better)
Translates to: RRIEWGHVQLWP*SSRQVPECPGL
Trigger: AAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGATCCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp GCCATCCCGGGCTGGATCTGGGAAAGGAGGATCGAATaGGGCCATGTCCAGCTCTGGCCTTGGAGTTCTCGG +
Preference number: 6 (lower is better)
Translates to: AIPGWIWERRIE*GHVQLWPWSSR
Trigger: CCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGATCCTCCTTTCCCAGATCCAGCCCGGGATGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp ACATTGATGTCCAGCCGGTCCAGCTGTGCCTTCTTGTaGCGCTCCACTGTGGAACCCGCCGTGTCAGCCTCG +
Preference number: 6 (lower is better)
Translates to: TLMSSRSSCAFL*RSTVEPAVSAS
Trigger: CGAGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp ATCCTGCTCTGTCCACTGCGCACAGCCCACCCACCTTaGCTGTCCAGGCTGATGTCCATGACGCCGTGCTTG +
Preference number: 6 (lower is better)
Translates to: ILLCPLRTAHPP*LSRLMSMTPCL
Trigger: CAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CAA 72 bp AAGGAGGATCGAATGGGGCCATGTCCAGCTCTGGCCTaGGAGTTCTCGGCAAGTGCCGGAGTGTCCGGGGCT +
Preference number: 6 (lower is better)
Translates to: KEDRMGPCPALA*EFSASAGVSGA
Trigger: AGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCCATTCGATCCTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp TGCACATTGATGTCCAGCCGGTCCAGCTGTGCCTTCTaGTGGCGCTCCACTGTGGAACCCGCCGTGTCAGCC +
Preference number: 6 (lower is better)
Translates to: CTLMSSRSSCAF*WRSTVEPAVSA
Trigger: GGCTGACACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS TCA 72 bp AGCTCATTTTCTGAGACCAGGCCCAGCACAGCCGCCTaGGCCAAGGACAGCACCACCACAGCGTCGGTCTGT +
Preference number: 6 (lower is better)
Translates to: SSFSETRPSTAA*AKDSTTTASVC
Trigger: ACAGACCGACGCTGTGGTGGTGCTGTCCTTGGCTCAGGCGGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp GAACCCGCCGTGTCAGCCTCGAACTCGCTGGACTCCTaGCACACGAAGCCCTGCTCTGGTTTGACGAGTTCT +
Preference number: 6 (lower is better)
Translates to: EPAVSASNSLDS*HTKPCSGLTSS
Trigger: AGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGCTGACACGGCGGGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp AGGGTGGAGAAGTCTAGGCCGCATTCGACACAGACATaGCAGCGGCCACTCTCGTGCTTCACCTCATGGGCC +
Preference number: 6 (lower is better)
Translates to: RVEKSRPHSTQT*QRPLSCFTSWA
Trigger: GGCCCATGAGGTGAAGCACGAGAGTGGCCGCTGCCATGTCTGTGTCGAATGCGGCCTAGACTTCTCCACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 90 bp TCATCGATCTGCACATTGATGTCCAGCCGGTCCAGCTGTGCCTTCTaGTGGCGCTCCACTGTGGAACCCGCCGTGTCAGCCTCGAACTCG +
Preference number: 6 (lower is better)
Translates to: SSICTLMSSRSSCAF*WRSTVEPAVSASNS
Trigger: CGAGTTCGAGGCTGACACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTGCAGATCGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp ATCGATCTGCACATTGATGTCCAGCCGGTCCAGCTGTaGCTTCTTGTGGCGCTCCACTGTGGAACCCGCCGT +
Preference number: 6 (lower is better)
Translates to: IDLHIDVQPVQL*LLVALHCGTRR
Trigger: ACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTGCAGATCGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp GGGTCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTG +
Preference number: 6 (lower is better)
Translates to: GSWLSRLMSMTP*LTFMCRLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS GCA 72 bp CCACCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTG +
Preference number: 6 (lower is better)
Translates to: PPWLSRLMSMTP*LTFMCRLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CAA 72 bp CCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGG +
Preference number: 6 (lower is better)
Translates to: PWLSRLMSMTPC*TFMCRLRFPLR
Trigger: CCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 90 bp GCCCACCCACCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAACTTG +
Preference number: 6 (lower is better)
Translates to: AHPPWLSRLMSMTPC*TFMCRLRFPLRLNL
Trigger: CAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGTGGGTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CAA 90 bp GCCTCGAACTCGCTGGACTCCTGCCACACGAAGCCCTGCTCTGGTTaGACGAGTTCTGTCGTCGATGTCATGTTGGGAGGCTCAGGATTG +
Preference number: 6 (lower is better)
Translates to: ASNSLDSCHTKPCSG*TSSVVDVMLGGSGL
Trigger: CAATCCTGAGCCTCCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS TCA 72 bp CTCAGCACTTATGGTGGCTCCGAAGAGCTCATTTTCTaGGACCAGGCCCAGCACAGCCGCCTGAGCCAAGGA +
Preference number: 6 (lower is better)
Translates to: LSTYGGSEELIF*DQAQHSRLSQG
Trigger: TCCTTGGCTCAGGCGGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS TCA 72 bp CCGCCTCCACTAGGTAGGAGTCATCGATCTGCACATTaGTGTCCAGCCGGTCCAGCTGTGCCTTCTTGTGGC +
Preference number: 6 (lower is better)
Translates to: PPPLGRSHRSAH*CPAGPAVPSCG
Trigger: GCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTGCAGATCGATGACTCCTACCTAGTGGAGGCGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp GCCTCGAACTCGCTGGACTCCTGCCACACGAAGCCCTaGTCTGGTTTGACGAGTTCTGTCGTCGATGTCATG +
Preference number: 6 (lower is better)
Translates to: ASNSLDSCHTKP*SGLTSSVVDVM
Trigger: CATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS GCA 72 bp ATCCCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTaGTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTG +
Preference number: 6 (lower is better)
Translates to: IPWLSRLMSMTP*LTFMCRLRFPL
Trigger: CAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS GCA 72 bp CCCCCTACACCCCTAATTGGAGAGGAGACTCCTGAGTaGGCCATGCTGCTGTCAATCCTGCTCTGTCCACTG +
Preference number: 6 (lower is better)
Translates to: PPTPLIGEETPE*AMLLSILLCPL
Trigger: CAGTGGACAGAGCAGGATTGACAGCAGCATGGCGCACTCAGGAGTCTCCTCTCCAATTAGGGGTGTAGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206039.2
CDS CCA 72 bp CATCCAGCTGCTCTAGCAGCAGTGCTAAGCATCCCTTaGCTGTCCAGGCTGATGTCCATGACGCCGTGCTTG +
Preference number: 6 (lower is better)
Translates to: HPAALAAVLSIP*LSRLMSMTPCL
Trigger: CAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGATGCTTAGCACTGCTGCTAGAGCAGCTGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS CAA 72 bp TCGCTGGACTCCTGCCACACGAAGCCCTGCTCTGGTTaGACGAGTTCTGTCGTCGATGTCATGTTGGGAGGC +
Preference number: 6 (lower is better)
Translates to: SLDSCHTKPCSG*TSSVVDVMLGG
Trigger: GCCTCCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp TCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGG +
Preference number: 6 (lower is better)
Translates to: SWLSRLMSMTPC*TFMCRLRFPLR
Trigger: CCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS CAA 72 bp GCATCCAGCTGCTCTAGCAGCAGTGCTAAGCATCCCTaGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTT +
Preference number: 6 (lower is better)
Translates to: ASSCSSSSAKHP*AVQADVHDAVL
Trigger: AAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGATGCTTAGCACTGCTGCTAGAGCAGCTGGATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS CAA 90 bp ACGCCGTGCTTGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTaGAACTTGCTGGAGCAGTACGGGCACTTGAATGGCTTGCTGCCT +
Preference number: 6 (lower is better)
Translates to: TPCLTFMCRLRFPLR*NLLEQYGHLNGLLP
Trigger: AGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 90 bp GGCATACGAGCATCCAGCTGCTCTAGCAGCAGTGCTAAGCATCCCTaGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTTGACCTTCAT +
Preference number: 6 (lower is better)
Translates to: GIRASSCSSSSAKHP*AVQADVHDAVLDLH
Trigger: ATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGATGCTTAGCACTGCTGCTAGAGCAGCTGGATGCTCGTATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS CCA 72 bp GAACTCGCTGGACTCCTGCCACACGAAGCCCTGCTCTaGTTTGACGAGTTCTGTCGTCGATGTCATGTTGGG +
Preference number: 6 (lower is better)
Translates to: ELAGLLPHEALL*FDEFCRRCHVG
Trigger: CCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp CCGTGCTTGACCTTCATGTGCCGGCTCAGGTTTCCCTaGAGGTTGAACTTGCTGGAGCAGTACGGGCACTTG +
Preference number: 6 (lower is better)
Translates to: PCLTFMCRLRFP*RLNLLEQYGHL
Trigger: CAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 90 bp TCCATGACGCCGTGCTTGACCTTCATGTGCCGGCTCAGGTTTCCCTaGAGGTTGAACTTGCTGGAGCAGTACGGGCACTTGAATGGCTTG +
Preference number: 6 (lower is better)
Translates to: SMTPCLTFMCRLRFP*RLNLLEQYGHLNGL
Trigger: CAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 90 bp ATCATGGGGTCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAACTTG +
Preference number: 6 (lower is better)
Translates to: IMGSWLSRLMSMTPC*TFMCRLRFPLRLNL
Trigger: CAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGACCCCATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
CDS CAA 90 bp CTAAGCATCCCTTGGCTGTCCAGGCTGATGTCCATGACGCCGTGCTaGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAACTTG +
Preference number: 6 (lower is better)
Translates to: LSIPWLSRLMSMTPC*TFMCRLRFPLRLNL
Trigger: CAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAGGGATGCTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166250.8
CDS GCA 72 bp AGGCTGATGTCCATGACGCCGTGCTTGACCTTCATGTaGCGGCTCAGGTTTCCCTTGAGGTTGAACTTGCTG +
Preference number: 6 (lower is better)
Translates to: RLMSMTPCLTFM*RLRFPLRLNLL
Trigger: CAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp CTGGCCCTAGGTCTGGATAGAAGGCCTCAGCACTTATaGTGGCTCCGAAGAGCTCATTTTCTGAGACCAGGC +
Preference number: 6 (lower is better)
Translates to: LALGLDRRPQHL*WLRRAHFLRPG
Trigger: GCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTATCCAGACCTAGGGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp ATGTTGGGAGGCTCAGGATTGCTCAATGGGGCCAGGTaGGGCGGCTCAAAACTACATTCAGTGGGCAAAGTC +
Preference number: 6 (lower is better)
Translates to: MLGGSGLLNGAR*GGSKLHSVGKV
Trigger: GACTTTGCCCACTGAATGTAGTTTTGAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp TGCTCTGGTTTGACGAGTTCTGTCGTCGATGTCATGTaGGGAGGCTCAGGATTGCTCAATGGGGCCAGGTGG +
Preference number: 6 (lower is better)
Translates to: CSGLTSSVVDVM*GGSGLLNGARW
Trigger: CCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCAACATGACATCGACGACAGAACTCGTCAAACCAGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp TTCATGTGCCGGCTCAGGTTTCCCTTGAGGTTGAACTaGCTGGAGCAGTACGGGCACTTGAATGGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: FMCRLRFPLRLN*LEQYGHLNGLL
Trigger: CAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CAA 72 bp TTGACCTTCATGTGCCGGCTCAGGTTTCCCTTGAGGTaGAACTTGCTGGAGCAGTACGGGCACTTGAATGGC +
Preference number: 6 (lower is better)
Translates to: LTFMCRLRFPLR*NLLEQYGHLNG
Trigger: GCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2
CDS CCA 72 bp CACTTGAACGGCTTCACAGGCGAGTGCACAATCATGTaGGTCTTGAGGGTTTGCTTCTGCACGAAGGTCTTG +
Preference number: 6 (lower is better)
Translates to: HLNGFTGECTIM*VLRVCFCTKVL
Trigger: CAAGACCTTCGTGCAGAAGCAAACCCTCAAGACCCACATGATTGTGCACTCGCCTGTGAAGCCGTTCAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049680.10
ENSMUST00000164056.9
ENSMUST00000166250.8
ENSMUST00000206039.2