Pregenerated sensors for ZFP706 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062397Ensembl transcript IDs: ENSMUST00000078976.9
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGAGGTTGGGGACAGGGCTGTTGTGCAGACTACAAGCACTAGACTaGCCCTTGAATCACCTTCCTTCAAACACAGCTGCACGAGCCAGG | + |
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Preference number: 1 (lower is better) Translates to: GRLGTGLLCRLQALD*PLNHLPSNTAARAR Trigger: CCTGGCTCGTGCAGCTGTGTTTGAAGGAAGGTGATTCAAGGGCCAGTCTAGTGCTTGTAGTCTGCACAACAGCCCTGTCCCCAACCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR GCA 90 bp | AGAGGGACTGTACTTCTGCGAGGGAGGTTGGGGACAGGGCTGTTGTaGAGACTACAAGCACTAGACTGGCCCTTGAATCACCTTCCTTCA | + |
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Preference number: 1 (lower is better) Translates to: RGTVLLRGRLGTGLL*RLQALDWPLNHLPS Trigger: TGAAGGAAGGTGATTCAAGGGCCAGTCTAGTGCTTGTAGTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CCA 90 bp | TGGCCCTTGAATCACCTTCCTTCAAACACAGCTGCACGAGCCAGGTaGTCAGAGTATGCTAAGCTGTCCACTAACTGCCCAGGCTACATC | + |
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Preference number: 1 (lower is better) Translates to: WPLNHLPSNTAARAR*SEYAKLSTNCPGYI Trigger: GATGTAGCCTGGGCAGTTAGTGGACAGCTTAGCATACTCTGACCACCTGGCTCGTGCAGCTGTGTTTGAAGGAAGGTGATTCAAGGGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 90 bp | CATGACTTTAATCCCTCTACTCAGGGAGTAGAGGAAGGAGATCTCTaGGTTCCAGGACAGCCACAGCTACACAGAGAAACCCTATCTCAA | + |
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Preference number: 1 (lower is better) Translates to: HDFNPSTQGVEEGDL*VPGQPQLHRETLSQ Trigger: TTGAGATAGGGTTTCTCTGTGTAGCTGTGGCTGTCCTGGAACTCAGAGATCTCCTTCCTCTACTCCCTGAGTAGAGGGATTAAAGTCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 90 bp | CTAGCAGTACTGGACTCAGAGCCCATATGGACTCACATAAGTGAATaGGCAGCCTCCATAGAACTCCAAGTTAACACAGACCACTTCTCA | + |
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Preference number: 1 (lower is better) Translates to: LAVLDSEPIWTHISE*AASIELQVNTDHFS Trigger: TGAGAAGTGGTCTGTGTTAACTTGGAGTTCTATGGAGGCTGCTCATTCACTTATGTGAGTCCATATGGGCTCTGAGTCCAGTACTGCTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 90 bp | TCACACATTGTCCAGAAGGGCTCACTGGCAACTCTACCAATTGTATaGATTGAATCTGTCATCTACAATGACTCCCAGATGGACACACAG | + |
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Preference number: 1 (lower is better) Translates to: SHIVQKGSLATLPIV*IESVIYNDSQMDTQ Trigger: CTGTGTGTCCATCTGGGAGTCATTGTAGATGACAGATTCAATTCATACAATTGGTAGAGTTGCCAGTGAGCCCTTCTGGACAATGTGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 90 bp | CCAAGCAGGTGGAAGCACGAAGATCACAGAACAGGCTGGGCTATATaGGACAGTGTCTCAAAAACAAAACCACAAATAATTATGGAACAG | + |
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Preference number: 1 (lower is better) Translates to: PSRWKHEDHRTGWAI*DSVSKTKPQIIMEQ Trigger: CTGTTCCATAATTATTTGTGGTTTTGTTTTTGAGACACTGTCTCATATAGCCCAGCCTGTTCTGTGATCTTCGTGCTTCCACCTGCTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 90 bp | TTGGGGACAGGGCTGTTGTGCAGACTACAAGCACTAGACTGGCCCTaGAATCACCTTCCTTCAAACACAGCTGCACGAGCCAGGTGGTCA | + |
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Preference number: 2 (lower is better) Translates to: LGTGLLCRLQALDWP*NHLPSNTAARARWS Trigger: TGACCACCTGGCTCGTGCAGCTGTGTTTGAAGGAAGGTGATTCAAGGGCCAGTCTAGTGCTTGTAGTCTGCACAACAGCCCTGTCCCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR CCA 90 bp | ATAGAGGGACTGTACTTCTGCGAGGGAGGTTGGGGACAGGGCTGTTGTGCAGACTCCAGAAGGGCTCACTaGCAACTCTACCAATTGTAT | + |
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Preference number: 2 (lower is better) Translates to: IEGLYFCEGGWGQGCCADSRRAH*QLYQLY Trigger: ATACAATTGGTAGAGTTGCCAGTGAGCCCTTCTGGA...GTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR CCA 90 bp | ATAGAGGGACTGTACTTCTGCGAGGGAGGTTGGGGACAGGGCTGTTGTGCAGACTTAGTCTTCCTTCACTaGCAGACTTTACCTTACCCT | + |
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Preference number: 2 (lower is better) Translates to: IEGLYFCEGGWGQGCCADLVFLH*QTLPYP Trigger: AGGGTAAGGTAAAGTCTGCCAGTGAAGGAAGACTAA...GTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR TCA 90 bp | CAATTTGCAAAGACACAGGCCTTTATAGGTCACATTTGTTCCTTCACACATTGTAACCTGCCACTGAGCTaGGAAAGGGAGAGAACTGCT | + |
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Preference number: 2 (lower is better) Translates to: QFAKTQAFIGHICSFTHCNLPLS*ERERTA Trigger: AGCAGTTCTCTCCCTTTCTCAGCTCAGTGGCAGGTT...ACAATGTGTGAAGGAACAAATGTGACCTATAAAGGCCTGTGTCTTTGCAAATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 90 bp | ACATTGTCCAGAAGGGCTCACTGGCAACTCTACCAATTGTATGAATaGAATCTGTCATCTACAATGACTCCCAGATGGACACACAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: TLSRRAHWQLYQLYE*NLSSTMTPRWTHRK Trigger: TTTCCTGTGTGTCCATCTGGGAGTCATTGTAGATGACAGATTCAATTCATACAATTGGTAGAGTTGCCAGTGAGCCCTTCTGGACAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR TCA 90 bp | ATGACACTTTGTTTACTCTTAGGCAGTATCTTACAGACAGCTATATATAGGGAAAGACTAGACAGCCTTTaGTTTCAGGAGCCAGCACTA | + |
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Preference number: 2 (lower is better) Translates to: MTLCLLLGSILQTAIYRERLDSL*FQEPAL Trigger: TAGTGCTGGCTCCTGAAATCAAAGGCTGTCTAGTCT...TTCCCTATATATAGCTGTCTGTAAGATACTGCCTAAGAGTAAACAAAGTGTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR TCA 90 bp | ATGACACTTTGTTTACTCTTAGGCAGTATCTTACAGACAGCTATATATAGGGAAATCTGTCATCTACAATaGCTCCCAGATGGACACACA | + |
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Preference number: 2 (lower is better) Translates to: MTLCLLLGSILQTAIYREICHLQ*LPDGHT Trigger: TGTGTGTCCATCTGGGAGTCATTGTAGATGACAGAT...TTCCCTATATATAGCTGTCTGTAAGATACTGCCTAAGAGTAAACAAAGTGTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR TCA 90 bp | ATGACACTTTGTTTACTCTTAGGCAGTATCTTACAGACAGCTATATATAGGGAAATTGCGATCAGGCTCTaGATAACCAGTTTGTCACTA | + |
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Preference number: 2 (lower is better) Translates to: MTLCLLLGSILQTAIYREIAIRL*ITSLSL Trigger: TAGTGACAAACTGGTTATTCAGAGCCTGATCGCAAT...TTCCCTATATATAGCTGTCTGTAAGATACTGCCTAAGAGTAAACAAAGTGTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR TCA 90 bp | ATGACACTTTGTTTACTCTTAGGCAGTATCTTACAGACAGCTATATATAGGGAAGCACGATTTAATGAATaGGTCTGCTCTGGTTTAACA | + |
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Preference number: 2 (lower is better) Translates to: MTLCLLLGSILQTAIYREARFNE*VCSGLT Trigger: TGTTAAACCAGAGCAGACTCATTCATTAAATCGTGC...TTCCCTATATATAGCTGTCTGTAAGATACTGCCTAAGAGTAAACAAAGTGTCAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR CAA 90 bp | ATAGAGGGACTGTACTTCTGCGAGGGAGGTTGGGGACAGGGCTGTTGTGCAGACTTGTTCCTTCACACATaGTCCAGAAGGGCTCACTGG | + |
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Preference number: 3 (lower is better) Translates to: IEGLYFCEGGWGQGCCADLFLHT*SRRAHW Trigger: CCAGTGAGCCCTTCTGGACAATGTGTGAAGGAACAA...GTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR CAA 90 bp | ATAGAGGGACTGTACTTCTGCGAGGGAGGTTGGGGACAGGGCTGTTGTGCAGACGCACTAGACTGGCCCTaGAATCACCTTCCTTCAAAC | + |
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Preference number: 3 (lower is better) Translates to: IEGLYFCEGGWGQGCCADALDWP*NHLPSN Trigger: GTTTGAAGGAAGGTGATTCAAGGGCCAGTCTAGTGC...GTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CCA 72 bp | GGGACAGGGCTGTTGTGCAGACTACAAGCACTAGACTaGCCCTTGAATCACCTTCCTTCAAACACAGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: GTGLLCRLQALD*PLNHLPSNTAA Trigger: TGCAGCTGTGTTTGAAGGAAGGTGATTCAAGGGCCAGTCTAGTGCTTGTAGTCTGCACAACAGCCCTGTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 72 bp | AATCCCTCTACTCAGGGAGTAGAGGAAGGAGATCTCTaGGTTCCAGGACAGCCACAGCTACACAGAGAAACC | + |
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Preference number: 3 (lower is better) Translates to: NPSTQGVEEGDL*VPGQPQLHRET Trigger: GGTTTCTCTGTGTAGCTGTGGCTGTCCTGGAACTCAGAGATCTCCTTCCTCTACTCCCTGAGTAGAGGGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CCA 72 bp | AATCACCTTCCTTCAAACACAGCTGCACGAGCCAGGTaGTCAGAGTATGCTAAGCTGTCCACTAACTGCCCA | + |
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Preference number: 3 (lower is better) Translates to: NHLPSNTAARAR*SEYAKLSTNCP Trigger: TGGGCAGTTAGTGGACAGCTTAGCATACTCTGACCACCTGGCTCGTGCAGCTGTGTTTGAAGGAAGGTGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CCA 72 bp | AGAGCAAGGTTGGTGCATGCCTGTAATCCAAGCAGGTaGAAGCACGAAGATCACAGAACAGGCTGGGCTATA | + |
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Preference number: 3 (lower is better) Translates to: RARLVHACNPSR*KHEDHRTGWAI Trigger: TATAGCCCAGCCTGTTCTGTGATCTTCGTGCTTCCACCTGCTTGGATTACAGGCATGCACCAACCTTGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CCA 72 bp | CAGATGGACACACAGGAAATGATCAGAAGTGGGGAATaGTGTGTAGCTGTGAATACACGGAAGCAGATCAGC | + |
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Preference number: 3 (lower is better) Translates to: QMDTQEMIRSGE*CVAVNTRKQIS Trigger: GCTGATCTGCTTCCGTGTATTCACAGCTACACACCATTCCCCACTTCTGATCATTTCCTGTGTGTCCATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 72 bp | CTGGACTCAGAGCCCATATGGACTCACATAAGTGAATaGGCAGCCTCCATAGAACTCCAAGTTAACACAGAC | + |
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Preference number: 3 (lower is better) Translates to: LDSEPIWTHISE*AASIELQVNTD Trigger: GTCTGTGTTAACTTGGAGTTCTATGGAGGCTGCTCATTCACTTATGTGAGTCCATATGGGCTCTGAGTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CCA 72 bp | AACTCAGCAAGAGGCAGAGACAGAGCAAGGTCCTTATaGTCCATACAACAGAAGCCATTAGAAATCCCGATG | + |
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Preference number: 3 (lower is better) Translates to: NSARGRDRARSL*SIQQKPLEIPM Trigger: CATCGGGATTTCTAATGGCTTCTGTTGTATGGACCATAAGGACCTTGCTCTGTCTCTGCCTCTTGCTGAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR CAA 90 bp | AGTATGCTAAGCTGTCCACTAACTGCCCAGGCTACATCACGAGGGATCCGTTTGTGGCAACTCTACCAATaGTATGAATTGAATCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: SMLSCPLTAQATSRGIRLWQLYQ*YELNLS Trigger: TGACAGATTCAATTCATACAATTGGTAGAGTTGCCA...CAAACGGATCCCTCGTGATGTAGCCTGGGCAGTTAGTGGACAGCTTAGCATACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 72 bp | ATGTTCTTCCCATTACATCACCGTCTAAACTTAAGCTaGGTTCCGGCAGACTTGCTTGTAACCTACACCAGC | + |
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Preference number: 3 (lower is better) Translates to: MFFPLHHRLNLS*VPADLLVTYTS Trigger: GCTGGTGTAGGTTACAAGCAAGTCTGCCGGAACTCAGCTTAAGTTTAGACGGTGATGTAATGGGAAGAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR GCA 72 bp | TCGTCTGTTAGGAGACTCTGCACACTAAATTACAGATaGTCGAGTTGTCGTTTCCTCCTCACAGCAGGTTTA | + |
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Preference number: 3 (lower is better) Translates to: SSVRRLCTLNYR*SSCRFLLTAGL Trigger: TAAACCTGCTGTGAGGAGGAAACGACAACTCGAGCATCTGTAATTTAGTGTGCAGAGTCTCCTAACAGACGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 72 bp | GTCCAGAAGGGCTCACTGGCAACTCTACCAATTGTATaGATTGAATCTGTCATCTACAATGACTCCCAGATG | + |
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Preference number: 3 (lower is better) Translates to: VQKGSLATLPIV*IESVIYNDSQM Trigger: CATCTGGGAGTCATTGTAGATGACAGATTCAATTCATACAATTGGTAGAGTTGCCAGTGAGCCCTTCTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR GCA 72 bp | CGGCAAAGCTTTATTCTTACATCTTCAGGAACAGAGTaGAAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: RQSFILTSSGTE*KKQESKKQERE Trigger: CTCTCTCTCTTGCTTCTTGCTCTCTTGCTTCTTGCACTCTGTTCCTGAAGATGTAAGAATAAAGCTTTGCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR-3UTR CAA 90 bp | ATGACACTTTGTTTACTCTTAGGCAGTATCTTACAGACAGCTATATATAGGGAACAGACTAGACAGCCTTaGATTTCAGGAGCCAGCACT | + |
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Preference number: 3 (lower is better) Translates to: MTLCLLLGSILQTAIYREQTRQP*ISGAST Trigger: AGTGCTGGCTCCTGAAATCAAAGGCTGTCTAGTCTG...TTCCCTATATATAGCTGTCTGTAAGATACTGCCTAAGAGTAAACAAAGTGTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR TCA 72 bp | TGTAACATCAACACTGAAGACCACACCCATAGCATGTaGCTTAAGTCTATCTCTGTAGCAAAGATTTCAAAC | + |
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Preference number: 3 (lower is better) Translates to: CNINTEDHTHSM*LKSISVAKISN Trigger: GTTTGAAATCTTTGCTACAGAGATAGACTTAAGTCACATGCTATGGGTGTGGTCTTCAGTGTTGATGTTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR GCA 72 bp | ACTAACATACAGAGTACAAACAGATCAGTCCCCTCCTaGTATTTTATATCACCTTTGAAGACAGCAAACAGT | + |
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Preference number: 3 (lower is better) Translates to: TNIQSTNRSVPS*YFISPLKTANS Trigger: ACTGTTTGCTGTCTTCAAAGGTGATATAAAATAGCAGGAGGGGACTGATCTGTTTGTACTCTGTATGTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | GGGCTGTTGTGCAGACTACAAGCACTAGACTGGCCCTaGAATCACCTTCCTTCAAACACAGCTGCACGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GLLCRLQALDWP*NHLPSNTAARA Trigger: GGCTCGTGCAGCTGTGTTTGAAGGAAGGTGATTCAAGGGCCAGTCTAGTGCTTGTAGTCTGCACAACAGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | GAATTAAATAGAGGGACTGTACTTCTGCGAGGGAGGTaGGGGACAGGGCTGTTGTGCAGACTACAAGCACTA | + |
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Preference number: 4 (lower is better) Translates to: ELNRGTVLLRGR*GTGLLCRLQAL Trigger: TAGTGCTTGTAGTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCTATTTAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| CDS-3UTR CCA 90 bp | GCAGATCAGCCATTCTTTAACCCGCATCAGCTGCCAATAGAATCAAGTGCACGAAACATCAGCCAATTCTaGAGGAAGTGGAGTCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: ADQPFFNPHQLPIESSARNISQF*RKWSLR Trigger: CCTAAGACTCCACTTCCTCCAGAATTGGCTGATGTT...TCGTGCACTTGATTCTATTGGCAGCTGATGCGGGTTAAAGAATGGCTGATCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | TCTGCTCGTTCAGGTGGAAGTCAGACTAGACAGCCTTaGATTTCAGGAGCCAGCACTAAGGCTCTAAAATTA | + |
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Preference number: 4 (lower is better) Translates to: SARSGGSQTRQP*ISGASTKALKL Trigger: TAATTTTAGAGCCTTAGTGCTGGCTCCTGAAATCAAAGGCTGTCTAGTCTGACTTCCACCTGAACGAGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | ACAATTTGCAAAGACACAGGCCTTTATAGGTCACATTaGTTCCTTCACACATTGTCCAGAAGGGCTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: TICKDTGLYRSH*FLHTLSRRAHW Trigger: CCAGTGAGCCCTTCTGGACAATGTGTGAAGGAACAAATGTGACCTATAAAGGCCTGTGTCTTTGCAAATTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | AGAAGGGCTCACTGGCAACTCTACCAATTGTATGAATaGAATCTGTCATCTACAATGACTCCCAGATGGACA | + |
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Preference number: 4 (lower is better) Translates to: RRAHWQLYQLYE*NLSSTMTPRWT Trigger: TGTCCATCTGGGAGTCATTGTAGATGACAGATTCAATTCATACAATTGGTAGAGTTGCCAGTGAGCCCTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | ACATTGTCCAGAAGGGCTCACTGGCAACTCTACCAATaGTATGAATTGAATCTGTCATCTACAATGACTCCC | + |
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Preference number: 4 (lower is better) Translates to: TLSRRAHWQLYQ*YELNLSSTMTP Trigger: GGGAGTCATTGTAGATGACAGATTCAATTCATACAATTGGTAGAGTTGCCAGTGAGCCCTTCTGGACAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| 3UTR CAA 72 bp | TGTACACTACACACAGCAAGATTTCTGAATGACACTTaGTTTACTCTTAGGCAGTATCTTACAGACAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: CTLHTARFLNDT*FTLRQYLTDSY Trigger: ATAGCTGTCTGTAAGATACTGCCTAAGAGTAAACAAAGTGTCATTCAGAAATCTTGCTGTGTGTAGTGTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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| CDS-3UTR CAA 90 bp | ATAGAGGGACTGTACTTCTGCGAGGGAGGTTGGGGACAGGGCTGTTGTGCAGACCTTGGGGTCTGGCATTaGTGTCCTACAGACGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: IEGLYFCEGGWGQGCCADLGVWH*CPTDGA Trigger: TGCACCGTCTGTAGGACACAAATGCCAGACCCCAAG...GTCTGCACAACAGCCCTGTCCCCAACCTCCCTCGCAGAAGTACAGTCCCTCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078976.9 |
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