RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP683 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049410

Ensembl transcript IDs: ENSMUST00000105884.2

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGGACACAGGCCGCACTaGGAGGGCTTGGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWGHRPH*EGLAPE
Trigger: CTCAGGTGCCAAGCCCTCCCAGTGCGGCCTGTGTCC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGAGGCGAGAGGTAGGTaGGTGTGGGTCAGGCCACGG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWEARGR*VWVRPR
Trigger: CCGTGGCCTGACCCACACCCACCTACCTCTCGCCTC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGACGGGGAGGGAGGTGTaGGTAGGCGCCTCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWTGREV*VGASFW
Trigger: CCAGAAAGAGGCGCCTACCCACACCTCCCTCCCCGT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCGCACTGGGAGGGCTTaGCACCTGAGTGCAGCCGAA +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWRTGRA*HLSAAE
Trigger: TTCGGCTGCACTCAGGTGCCAAGCCCTCCCAGTGCG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGGGGTTCCTTGGAGATaGGAGTGGGAGGAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWGVPWR*EWEEAR
Trigger: CCTGGCTTCCTCCCACTCTCATCTCCAAGGAACCCC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGACTGGGCAAGGCAGGTaGGAGAGGCGAGAGGTAGGT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWTGQGR*ERREVG
Trigger: ACCTACCTCTCGCCTCTCTCACCTGCCTTGCCCAGT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR GCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGACCAGGTGGTGCTTTTaGAGGTGGGCCAGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWTRWCF*RWASWV
Trigger: CACCCAGCTGGCCCACCTGCAAAAGCACCACCTGGT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR GCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGTCTAGCGCTCCTTGGTaGCACTGGGCAAGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWSSAPW*HWARQV
Trigger: CACCTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGA...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGTGGTGCTTTTGCAGGTaGGCCAGCTGGGTGAAGCGC +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWWCFCR*ASWVKR
Trigger: GCGCTTCACCCAGCTGGCCCACCTGCAAAAGCACCA...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGCTCCTTGGTGCCACTaGGCAAGGCAGGTGAGAGAG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWAPWCH*ARQVRE
Trigger: CTCTCTCACCTGCCTTGCCCAGTGGCACCAAGGAGC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGAGTCTGCAAGTGGCTaGGAAGCGTCAGCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWESASG*EASAEQ
Trigger: CTGCTCAGCTGACGCTTCTCAGCCACTTGCAGACTC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGGTTGCTGGAGCTACTaGAGCGCTTGTGGCACACCT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWGCWSY*SACGTP
Trigger: AGGTGTGCCACAAGCGCTTCAGTAGCTCCAGCAACC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCTACTGAAGCGCTTGTaGCACACCTGGCACTGGTGG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLLKRL*HTWHWW
Trigger: CCACCAGTGCCAGGTGTGCCACAAGCGCTTCAGTAG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGAGATCTAGCGCTCCTTaGTGCCACTGGGCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWRSSAP*CHWARQ
Trigger: CTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGATCT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGTCATGAGCACCCACTaGGTCTGCAAGTGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWVMSTH*VCKWLR
Trigger: TCTCAGCCACTTGCAGACTCAGTGGGTGCTCATGAC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCTGGTGTCTCATGTTTaGGGCGTCTTCTCCGAGGTC +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLVSHV*GVFSEV
Trigger: GACCTCGGAGAAGACGCCTCAAACATGAGACACCAG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGAGTGTGGGGGCAGCATaGAGAGGTATGGATGTTGGG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWSVGAA*RGMDVG
Trigger: CCCAACATCCATACCTCTTCATGCTGCCCCCACACT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCTCGCAGGTGAACCTTaGGGTTGGAGAGTTGCCCAA +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLAGEP*GWRVAQ
Trigger: TTGGGCAACTCTCCAACCTCAAGGTTCACCTGCGAG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR GCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCCTAGGGGTGTCTTCTaGAGGGCACACAAGCATAGG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWPRGVF*RAHKHR
Trigger: CCTATGCTTGTGTGCCCTGCAGAAGACACCCCTAGG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGGGGTATGTGGAGTGTaGGGGCAGCATGAAGAGGTA +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWGVCGV*GQHEEV
Trigger: TACCTCTTCATGCTGCCCCCACACTCCACATACCCC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGAGTGCAGCCGAAGATaGGTCTTGAGGTTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWECSRR*VLRLLE
Trigger: CTCCAGCAACCTCAAGACCCATCTTCGGCTGCACTC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCTGTGTACTCGCAGGTaGACCTTGAGGTTGGAGAGT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLCTRR*TLRLES
Trigger: ACTCTCCAACCTCAAGGTTCACCTGCGAGTACACAG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGCTGGAAGTCCAGACTaGGGTACAGGGACTCTCTTA +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWAGSPD*GTGTLL
Trigger: TAAGAGAGTCCCTGTACCCCAGTCTGGACTTCCAGC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGTAGGCGCCTCTTTCTaGCTCATTTCCCATCTCCTC +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWVGASF*LISHLL
Trigger: GAGGAGATGGGAAATGAGCCAGAAAGAGGCGCCTAC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGAGCAGGGTCTTCTCTTaGGGAATACGAGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWSRVFS*GIRGPD
Trigger: GTCTGGACCTCGTATTCCCCAAGAGAAGACCCTGCT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGTGGAAAGCTCCCGAGTaGAGAAGCAGGGTCTTCTCT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWWKAPE*RSRVFS
Trigger: AGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCA...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGGCTTTGTACAAGCTTaGCGGCTGGTGTCTCATGTT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWGFVQA*RLVSHV
Trigger: AACATGAGACACCAGCCGCCAAGCTTGTACAAAGCC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR GCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGTTGCCCAAAGTTCTTaGCACACACGTTACACTCGT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWVAQSS*HTRYTR
Trigger: ACGAGTGTAACGTGTGTGGCAAGAACTTTGGGCAAC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR GCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGTTGAGGTTGGAGAGTTaGCCAAAGTTCTTGCCACAC +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLRLES*PKFLPH
Trigger: GTGTGGCAAGAACTTTGGGCAACTCTCCAACCTCAA...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR TCA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCTCCTCTCTGTTCAGTaGGTCCTTGATTGTGAGTTT +
Preference number: 4 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLLSVQ*VLDCEF
Trigger: AAACTCACAATCAAGGACTCACTGAACAGAGAGGAG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS GCA 90 bp TATGACACCTGCCCGGGAGCCTGGCACAGCCCGCCTTGTTGGAGCTaGCACACCAGCTTGTCCTGGGGTCCGGGTATCTCTAGAGCTCCG +
Preference number: 5 (lower is better)
Translates to: YDTCPGAWHSPPCWS*HTSLSWGPGISRAP
Trigger: CGGAGCTCTAGAGATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCAGGTGTCATA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp CAGGGCTATGACACCTGCCCGGGAGCCTGGCACAGCCCGCCTTGTTaGAGCTGCCACACCAGCTTGTCCTGGGGTCCGGGTATCTCTAGA +
Preference number: 5 (lower is better)
Translates to: QGYDTCPGAWHSPPC*SCHTSLSWGPGISR
Trigger: TCTAGAGATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCAGGTGTCATAGCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp TTTCTTCAGAGGGTAGGGCAGGGCTATGACACCTGCCCGGGAGCCTaGCACAGCCCGCCTTGTTGGAGCTGCCACACCAGCTTGTCCTGG +
Preference number: 5 (lower is better)
Translates to: FLQRVGQGYDTCPGA*HSPPCWSCHTSLSW
Trigger: CCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCAGGTGTCATAGCCCTGCCCTACCCTCTGAAGAAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS TCA 90 bp TCTCCACAAGATCTAGCGCTCCTTGGTGCCACTGGGCAAGGCAGGTaGGAGAGGCGAGAGGTAGGTGGGTGTGGGTCAGGCCACGGAGCT +
Preference number: 5 (lower is better)
Translates to: SPQDLALLGATGQGR*ERREVGGCGSGHGA
Trigger: AGCTCCGTGGCCTGACCCACACCCACCTACCTCTCGCCTCTCTCACCTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGATCTTGTGGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS GCA 90 bp TTTACCATTCTCTTTCTTCAGAGGGTAGGGCAGGGCTATGACACCTaGCCGGGAGCCTGGCACAGCCCGCCTTGTTGGAGCTGCCACACC +
Preference number: 5 (lower is better)
Translates to: FTILFLQRVGQGYDT*PGAWHSPPCWSCHT
Trigger: GGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCAGGTGTCATAGCCCTGCCCTACCCTCTGAAGAAAGAGAATGGTAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp CCAGAAGGTCAAGGGACTAAGGCTCTTTCTGTCCAGCCCAGCATCTaGGAAGGAGCTAGTACGGGGAGGGAGGTGTGGGTAGGCGCCTCT +
Preference number: 5 (lower is better)
Translates to: PEGQGTKALSVQPSI*EGASTGREVWVGAS
Trigger: AGAGGCGCCTACCCACACCTCCCTCCCCGTACTAGCTCCTTCCCAGATGCTGGGCTGGACAGAAAGAGCCTTAGTCCCTTGACCTTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp ACCTGGGAGTGTAGGGTGTGGCCGGCACTCTGGAAAGCTCCCGAGTaGAGAAGCAGGGTCTTCTCTTGGGGAATACGAGGTCCAGACCCA +
Preference number: 5 (lower is better)
Translates to: TWECRVWPALWKAPE*RSRVFSWGIRGPDP
Trigger: TGGGTCTGGACCTCGTATTCCCCAAGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCAGAGTGCCGGCCACACCCTACACTCCCAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp CAGCCCATCTTCTTCTCCACAAGATCTAGCGCTCCTTGGTGCCACTaGGCAAGGCAGGTGAGAGAGGCGAGAGGTAGGTGGGTGTGGGTC +
Preference number: 5 (lower is better)
Translates to: QPIFFSTRSSAPWCH*ARQVREARGRWVWV
Trigger: GACCCACACCCACCTACCTCTCGCCTCTCTCACCTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGATCTTGTGGAGAAGAAGATGGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS GCA 90 bp ACAGTCCAGCCCATCTTCTTCTCCACAAGATCTAGCGCTCCTTGGTaGCACTGGGCAAGGCAGGTGAGAGAGGCGAGAGGTAGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: TVQPIFFSTRSSAPW*HWARQVREARGRWV
Trigger: CACCCACCTACCTCTCGCCTCTCTCACCTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGATCTTGTGGAGAAGAAGATGGGCTGGACTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp GTCCAGCCCAGCATCTGGGAAGGAGCTAGTACGGGGAGGGAGGTGTaGGTAGGCGCCTCTTTCTGGCTCATTTCCCATCTCCTCTCTGTT +
Preference number: 5 (lower is better)
Translates to: VQPSIWEGASTGREV*VGASFWLISHLLSV
Trigger: AACAGAGAGGAGATGGGAAATGAGCCAGAAAGAGGCGCCTACCCACACCTCCCTCCCCGTACTAGCTCCTTCCCAGATGCTGGGCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCCGCACTGGGAGGGCTaGGCACCTGAGTGCAGCCGA +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWPHWEG*APECSR
Trigger: TCGGCTGCACTCAGGTGCCAAGCCCTCCCAGTGCGG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 90 bp CCGGCACTCTGGAAAGCTCCCGAGTGGAGAAGCAGGGTCTTCTCTTaGGGAATACGAGGTCCAGACCCACTGGCTGTCATAAGCAAGCTG +
Preference number: 5 (lower is better)
Translates to: PALWKAPEWRSRVFS*GIRGPDPLAVISKL
Trigger: CAGCTTGCTTATGACAGCCAGTGGGTCTGGACCTCGTATTCCCCAAGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCAGAGTGCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGAGCTGCCACACCAGCTaGTCCTGGGGTCCGGGTATC +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWSCHTS*SWGPGI
Trigger: GATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCACCAGGTGGTGCTTTaGCAGGTGGGCCAGCTGGGT +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWHQVVL*QVGQLG
Trigger: ACCCAGCTGGCCCACCTGCAAAAGCACCACCTGGTG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS TCA 90 bp ATAAGATTTTACCATTCTCTTTCTTCAGAGGGTAGGGCAGGGCTATaGCACCTGCCCGGGAGCCTGGCACAGCCCGCCTTGTTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: IRFYHSLSSEGRAGL*HLPGSLAQPALLEL
Trigger: CAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCAGGTGTCATAGCCCTGCCCTACCCTCTGAAGAAAGAGAATGGTAAAATCTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGAGCTACTGAAGCGCTaGTGGCACACCTGGCACTGG +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWELLKR*WHTWHW
Trigger: CCAGTGCCAGGTGTGCCACAAGCGCTTCAGTAGCTC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGTGGATAGGGGGTTCCTaGGAGATGAGAGTGGGAGGA +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWWIGGS*EMRVGG
Trigger: TCCTCCCACTCTCATCTCCAAGGAACCCCCTATCCA...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGAGATGGGTCTTGAGGTaGCTGGAGCTACTGAAGCGC +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWRWVLR*LELLKR
Trigger: GCGCTTCAGTAGCTCCAGCAACCTCAAGACCCATCT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGAGCCGAAGATGGGTCTaGAGGTTGCTGGAGCTACTG +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWSRRWV*RLLELL
Trigger: CAGTAGCTCCAGCAACCTCAAGACCCATCTTCGGCT...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGTACCCCTGCTTTCCCTaGGATTCCGAGGACACCTTG +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWYPCFP*DSEDTL
Trigger: CAAGGTGTCCTCGGAATCCAAGGGAAAGCAGGGGTA...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGGCAGACCTGGTCATCTaGATAGAGCTGGAAGTCCAG +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWADLVI*IELEVQ
Trigger: CTGGACTTCCAGCTCTATCAAGATGACCAGGTCTGC...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS-3UTR CAA 90 bp TTAATCGCTAACACTCTGCTCCCGGAGAAATCCCAGCACCATTGCTCAAGCTGGCTGTTCAGTGAGTCCTaGATTGTGAGTTTCTCACTG +
Preference number: 5 (lower is better)
Translates to: LIANTLLPEKSQHHCSSWLFSES*IVSFSL
Trigger: CAGTGAGAAACTCACAATCAAGGACTCACTGAACAG...CCAGCTTGAGCAATGGTGCTGGGATTTCTCCGGGAGCAGAGTGTTAGCGATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp GACACCTGCCCGGGAGCCTGGCACAGCCCGCCTTGTTaGAGCTGCCACACCAGCTTGTCCTGGGGTCCGGGT +
Preference number: 6 (lower is better)
Translates to: DTCPGAWHSPPC*SCHTSLSWGPG
Trigger: ACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCAGGTGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS GCA 72 bp TGCCCGGGAGCCTGGCACAGCCCGCCTTGTTGGAGCTaGCACACCAGCTTGTCCTGGGGTCCGGGTATCTCT +
Preference number: 6 (lower is better)
Translates to: CPGAWHSPPCWS*HTSLSWGPGIS
Trigger: AGAGATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 90 bp CCGGGAGCCTGGCACAGCCCGCCTTGTTGGAGCTGCCACACCAGCTaGTCCTGGGGTCCGGGTATCTCTAGAGCTCCGACTCTCAACCTG +
Preference number: 6 (lower is better)
Translates to: PGAWHSPPCWSCHTS*SWGPGISRAPTLNL
Trigger: CAGGTTGAGAGTCGGAGCTCTAGAGATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCAGGCTCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS TCA 72 bp GATCTAGCGCTCCTTGGTGCCACTGGGCAAGGCAGGTaGGAGAGGCGAGAGGTAGGTGGGTGTGGGTCAGGC +
Preference number: 6 (lower is better)
Translates to: DLALLGATGQGR*ERREVGGCGSG
Trigger: GCCTGACCCACACCCACCTACCTCTCGCCTCTCTCACCTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 90 bp CCGCACTGGGAGGGCTTGGCACCTGAGTGCAGCCGAAGATGGGTCTaGAGGTTGCTGGAGCTACTGAAGCGCTTGTGGCACACCTGGCAC +
Preference number: 6 (lower is better)
Translates to: PHWEGLAPECSRRWV*RLLELLKRLWHTWH
Trigger: GTGCCAGGTGTGCCACAAGCGCTTCAGTAGCTCCAGCAACCTCAAGACCCATCTTCGGCTGCACTCAGGTGCCAAGCCCTCCCAGTGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 72 bp TGGCACAGCCCGCCTTGTTGGAGCTGCCACACCAGCTaGTCCTGGGGTCCGGGTATCTCTAGAGCTCCGACT +
Preference number: 6 (lower is better)
Translates to: WHSPPCWSCHTS*SWGPGISRAPT
Trigger: AGTCGGAGCTCTAGAGATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCTGTGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp GGGGTCCGGGTATCTCTAGAGCTCCGACTCTCAACCTaGGAGTGTAGGGTGTGGCCGGCACTCTGGAAAGCT +
Preference number: 6 (lower is better)
Translates to: GVRVSLELRLST*ECRVWPALWKA
Trigger: AGCTTTCCAGAGTGCCGGCCACACCCTACACTCCCAGGTTGAGAGTCGGAGCTCTAGAGATACCCGGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp AGCCCGCCTTGTTGGAGCTGCCACACCAGCTTGTCCTaGGGTCCGGGTATCTCTAGAGCTCCGACTCTCAAC +
Preference number: 6 (lower is better)
Translates to: SPPCWSCHTSLS*GPGISRAPTLN
Trigger: GTTGAGAGTCGGAGCTCTAGAGATACCCGGACCCCAGGACAAGCTGGTGTGGCAGCTCCAACAAGGCGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 90 bp TGTCGGTGGAGGCTTTGTACAAGCTTGGCGGCTGGTGTCTCATGTTaGAGGCGTCTTCTCCGAGGTCCTGTGGGGCTCTGCCTAGGGGTG +
Preference number: 6 (lower is better)
Translates to: CRWRLCTSLAAGVSC*RRLLRGPVGLCLGV
Trigger: CACCCCTAGGCAGAGCCCCACAGGACCTCGGAGAAGACGCCTCAAACATGAGACACCAGCCGCCAAGCTTGTACAAAGCCTCCACCGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS TCA 72 bp GGCTTTGTACAAGCTTGGCGGCTGGTGTCTCATGTTTaGGGCGTCTTCTCCGAGGTCCTGTGGGGCTCTGCC +
Preference number: 6 (lower is better)
Translates to: GFVQAWRLVSHV*GVFSEVLWGSA
Trigger: GGCAGAGCCCCACAGGACCTCGGAGAAGACGCCTCAAACATGAGACACCAGCCGCCAAGCTTGTACAAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp CACTGGGAGGGCTTGGCACCTGAGTGCAGCCGAAGATaGGTCTTGAGGTTGCTGGAGCTACTGAAGCGCTTG +
Preference number: 6 (lower is better)
Translates to: HWEGLAPECSRR*VLRLLELLKRL
Trigger: CAAGCGCTTCAGTAGCTCCAGCAACCTCAAGACCCATCTTCGGCTGCACTCAGGTGCCAAGCCCTCCCAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 72 bp GAGGGCTTGGCACCTGAGTGCAGCCGAAGATGGGTCTaGAGGTTGCTGGAGCTACTGAAGCGCTTGTGGCAC +
Preference number: 6 (lower is better)
Translates to: EGLAPECSRRWV*RLLELLKRLWH
Trigger: GTGCCACAAGCGCTTCAGTAGCTCCAGCAACCTCAAGACCCATCTTCGGCTGCACTCAGGTGCCAAGCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 90 bp GCCGGCACTCTGGAAAGCTCCCGAGTGGAGAAGCAGGGTCTTCTCTaGGGGAATACGAGGTCCAGACCCACTGGCTGTCATAAGCAAGCT +
Preference number: 6 (lower is better)
Translates to: AGTLESSRVEKQGLL*GNTRSRPTGCHKQA
Trigger: AGCTTGCTTATGACAGCCAGTGGGTCTGGACCTCGTATTCCCCAAGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCAGAGTGCCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp TGTAGGGTGTGGCCGGCACTCTGGAAAGCTCCCGAGTaGAGAAGCAGGGTCTTCTCTTGGGGAATACGAGGT +
Preference number: 6 (lower is better)
Translates to: CRVWPALWKAPE*RSRVFSWGIRG
Trigger: ACCTCGTATTCCCCAAGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCAGAGTGCCGGCCACACCCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp CAGCCCATCTTCTTCTCCACAAGATCTAGCGCTCCTTaGTGCCACTGGGCAAGGCAGGTGAGAGAGGCGAGA +
Preference number: 6 (lower is better)
Translates to: QPIFFSTRSSAP*CHWARQVREAR
Trigger: TCTCGCCTCTCTCACCTGCCTTGCCCAGTGGCACCAAGGAGCGCTAGATCTTGTGGAGAAGAAGATGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS TCA 72 bp CACTGGAACGGGCGCTCGCCACTGTGTACTCGCAGGTaGACCTTGAGGTTGGAGAGTTGCCCAAAGTTCTTG +
Preference number: 6 (lower is better)
Translates to: HWNGRSPLCTRR*TLRLESCPKFL
Trigger: CAAGAACTTTGGGCAACTCTCCAACCTCAAGGTTCACCTGCGAGTACACAGTGGCGAGCGCCCGTTCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp TCACTGTCGGTGGAGGCTTTGTACAAGCTTGGCGGCTaGTGTCTCATGTTTGAGGCGTCTTCTCCGAGGTCC +
Preference number: 6 (lower is better)
Translates to: SLSVEALYKLGG*CLMFEASSPRS
Trigger: GGACCTCGGAGAAGACGCCTCAAACATGAGACACCAGCCGCCAAGCTTGTACAAAGCCTCCACCGACAGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 72 bp CTGGAAAGCTCCCGAGTGGAGAAGCAGGGTCTTCTCTaGGGGAATACGAGGTCCAGACCCACTGGCTGTCAT +
Preference number: 6 (lower is better)
Translates to: LESSRVEKQGLL*GNTRSRPTGCH
Trigger: ATGACAGCCAGTGGGTCTGGACCTCGTATTCCCCAAGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CCA 72 bp TGGAAAGCTCCCGAGTGGAGAAGCAGGGTCTTCTCTTaGGGAATACGAGGTCCAGACCCACTGGCTGTCATA +
Preference number: 6 (lower is better)
Translates to: WKAPEWRSRVFS*GIRGPDPLAVI
Trigger: TATGACAGCCAGTGGGTCTGGACCTCGTATTCCCCAAGAGAAGACCCTGCTTCTCCACTCGGGAGCTTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS TCA 72 bp GGTATGGATGTTGGGCAGAAGGTAGGGCCCCATAAGTaGATAGGTAAGGGAGAGGCAGAAGTGGGTACCCAG +
Preference number: 6 (lower is better)
Translates to: GMDVGQKVGPHK*IGKGEAEVGTQ
Trigger: CTGGGTACCCACTTCTGCCTCTCCCTTACCTATTCACTTATGGGGCCCTACCTTCTGCCCAACATCCATACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2
CDS CAA 72 bp GGCTCATTTCCCATCTCCTCTCTGTTCAGTGAGTCCTaGATTGTGAGTTTCTCACTGTCGGTGGAGGCTTTG +
Preference number: 6 (lower is better)
Translates to: GSFPISSLFSES*IVSFSLSVEAL
Trigger: CAAAGCCTCCACCGACAGTGAGAAACTCACAATCAAGGACTCACTGAACAGAGAGGAGATGGGAAATGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105884.2