Pregenerated sensors for ZFP677 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062743Ensembl transcript IDs: ENSMUST00000056107.11, ENSMUST00000162659.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGCTGATGCCTTCTAAATaGCGAATGGTAGGAATAGGA | + |
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Preference number: 2 (lower is better) Translates to: NGRNRTCHSHCTCIISMKLMPSK*RMVGIG Trigger: TCCTATTCCTACCATTCGTCATTTAGAAGGCATCAG...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| 3UTR-3UTR GCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACAACCTGTCACAGTCATTaGACTTGTATAATTTCTATG | + |
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Preference number: 2 (lower is better) Translates to: MMFSRSKALIKRFVTCLTTCHSH*TCIISM Trigger: CATAGAAATTATACAAGTGCAATGACTGTGACAGGT...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTAGCCACATCTTTGAATaGCAACAGACCCTGAGACAT | + |
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Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISSHIFE*QQTLRH Trigger: ATGTCTCAGGGTCTGTTGGCATTCAAAGATGTGGCT...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACTTCTCCAGTGTGCGTaGTTCTGTGTCTATCTGCGT | + |
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Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTLLQCA*FCVYLR Trigger: ACGCAGATAGACACAGAAGCACGCACACTGGAGAAG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGGGTTCTTCTCCAGTGTaGGTGCTTCTGTGTCTATCT | + |
|
Preference number: 4 (lower is better) Translates to: NGRNRTCHSHCTCIISMKGSSPV*VLLCLS Trigger: AGATAGACACAGAAGCACGCACACTGGAGAAGAACC...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCCACTATGCAAATTCTaGTGGCTTTTAAGGGATGAC | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISPLCKF*WLLRDD Trigger: GTCATCCCTTAAAAGCCATCAGAATTTGCATAGTGG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCTGATGCCTTCTAAATaGCGAATGGTAGGAATAGGA | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISLMPSK*RMVGIG Trigger: TCCTATTCCTACCATTCGTCATTTAGAAGGCATCAG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACAAATGCCAACAGACCCTaGGACATATTTCCAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTNANRP*DIFPGE Trigger: TTCTCCTGGAAATATGTCTCAGGGTCTGTTGGCATT...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACAAGCCACATCTTTGAATaGCAACAGACCCTGAGACAT | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTSHIFE*QQTLRH Trigger: ATGTCTCAGGGTCTGTTGGCATTCAAAGATGTGGCT...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTTTTCCCACACTGGTGTaGTTTTTCTCCAATGTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISFPTLV*FFSNVV Trigger: AACTACATTGGAGAAAAACCACACCAGTGTGGGAAA...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCATTTGAAGTGTTCATaGAGAATTTTGCCAAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISHLKCS*RILPSS Trigger: TGAGCTTGGCAAAATTCTTCATGAACACTTCAAATG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACAGATTCGAGGAAGTACTaGAGCATTTTCCACATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTDSRKY*SIFHIS Trigger: GGAAATGTGGAAAATGCTTCAGTACTTCCTCGAATC...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACCACTATGCAAATTCTaGTGGCTTTTAAGGGATGAC | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTPLCKF*WLLRDD Trigger: GTCATCCCTTAAAAGCCATCAGAATTTGCATAGTGG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTTTAAGGGTTGATAACTaGGGAAAAGACTTTCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISLRVDN*GKDFPH Trigger: ATGTGGAAAGTCTTTTCCTCAGTTATCAACCCTTAA...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGCCAAGCTCATTATACTaGCAAGACTCTTTTTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: NGRNRTCHSHCTCIISMKPSSLY*QDSFSV Trigger: TACAGAAAAAGAGTCTTGTCAGTATAATGAGCTTGG...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACCAGGATGCAAATTCTaGTGTATTTTAAGGGATGAC | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTPGCKF*CILRDD Trigger: GTCATCCCTTAAAATACATCAGAATTTGCATCCTGG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGTTAAGGGTTGATAACTaGGGAAAAGACTTTCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: NGRNRTCHSHCTCIISMKLRVDN*GKDFPH Trigger: ATGTGGAAAGTCTTTTCCTCAGTTATCAACCCTTAA...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTGTTCATGAAGAATTTTaGCAAGCTCATTATACTGAC | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISVHEEF*QAHYTD Trigger: GTCAGTATAATGAGCTTGGCAAAATTCTTCATGAAC...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTTGTGTAGAGCTGAAATaGTCATCATATTCTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISCVELK*SSYSSC Trigger: ACAAGAAGAATATGATGAGCATTTCAGCTCTACACA...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CCA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTTTAAGAGTTGTGCTCTaGGAAAAAGATTTGTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: MTNGRNRTCHSHCTCIISLRVVL*EKDLSQ Trigger: TTGTGACAAATCTTTTTCCCAGAGCACAACTCTTAA...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACCAAGCTCATTATACTaGCAAGACTCTTTTTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTPSSLY*QDSFSV Trigger: TACAGAAAAAGAGTCTTGTCAGTATAATGAGCTTGG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR TCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACATTTGAAGTGTTCATaGAGAATTTTGCCAAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTHLKCS*RILPSS Trigger: TGAGCTTGGCAAAATTCTTCATGAACACTTCAAATG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGTGTGTAGAGCTGAAATaGTCATCATATTCTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: NGRNRTCHSHCTCIISMKCVELK*SSYSSC Trigger: ACAAGAAGAATATGATGAGCATTTCAGCTCTACACA...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACAGTTCATGAAGAATTTTaGCAAGCTCATTATACTGAC | + |
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Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTVHEEF*QAHYTD Trigger: GTCAGTATAATGAGCTTGGCAAAATTCTTCATGAAC...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR GCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACAATTTGTCACAAATGTTaGACTTGTAGAGCTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTICHKC*TCRASF Trigger: GAAAGAAGCTCTACAAGTGCAACATTTGTGACAAAT...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CCA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACATTAAGAGTTGTGCTCTaGGAAAAAGATTTGTCACAA | + |
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Preference number: 4 (lower is better) Translates to: MMFSRSKALIKRFVTCLTLRVVL*EKDLSQ Trigger: TTGTGACAAATCTTTTTCCCAGAGCACAACTCTTAA...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS TCA 90 bp | CGGTTCTTCTCCAGTGTGCGTGCTTCTGTGTCTATCTGCGTTTGGTaGGTCATTAGACACATCCCTGTCACTACAGCATCTGTAGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: RFFSSVRASVSICVW*VIRHIPVTTASVVF Trigger: AAAAACTACAGATGCTGTAGTGACAGGGATGTGTCTAATGACTCACCAAACGCAGATAGACACAGAAGCACGCACACTGGAGAAGAACCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTGTCTGTGCTCTTTCTTaGCAGTATAGAGTCTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISVCALS*QYRVSD Trigger: ATCAGAGACTCTATACTGCAAAGAAAGAGCACAGAC...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCTCTGGGAAAAAGATTaGTCACAAAGGTTGCACTTG | + |
|
Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISLWEKD*SQRLHL Trigger: CAAGTGCAACCTTTGTGACAAATCTTTTTCCCAGAG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGGTCTGTGCTCTTTCTTaGCAGTATAGAGTCTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: NGRNRTCHSHCTCIISMKVCALS*QYRVSD Trigger: ATCAGAGACTCTATACTGCAAAGAAAGAGCACAGAC...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCTCATCATATTCTTCTaGTCTGTGCTCTTTCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISLIIFF*SVLFLC Trigger: GCAAAGAAAGAGCACAGACAAGAAGAATATGATGAG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCATTGGTTAAAGGATTaGCCACAAATGTTGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISHWLKD*PQMLHL Trigger: CAAGTGCAACATTTGTGGCAAATCCTTTAACCAATG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACTCTGGGAAAAAGATTaGTCACAAAGGTTGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: MMFSRSKALIKRFVTCLTLWEKD*SQRLHL Trigger: CAAGTGCAACCTTTGTGACAAATCTTTTTCCCAGAG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCCCAGTATGAAGTCTTaGATGTGTTTTAAGAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISPSMKS*MCFKSC Trigger: ACAACTCTTAAAACACATCAAAGACTTCATACTGGG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTTCCTGTATGAAGTCTTaGGTGTGTTTTAAGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISSCMKS*VCFKIC Trigger: GCAAATCTTAAAACACACCAAAGACTTCATACAGGA...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGACGAATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTCAACTGTTAAAGGATTaGCCACAAATGTTGCACTTA | + |
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Preference number: 5 (lower is better) Translates to: MTNGRNRTCHSHCTCIISQLLKD*PQMLHL Trigger: TAAGTGCAACATTTGTGGCAAATCCTTTAACAGTTG...AGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGCCCAGTATGAAGTCTTaGATGTGTTTTAAGAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: NGRNRTCHSHCTCIISMKPSMKS*MCFKSC Trigger: ACAACTCTTAAAACACATCAAAGACTTCATACTGGG...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGTCCTGTATGAAGTCTTaGGTGTGTTTTAAGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: NGRNRTCHSHCTCIISMKSCMKS*VCFKIC Trigger: GCAAATCTTAAAACACACCAAAGACTTCATACAGGA...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | AATGGTAGGAATAGGACCTGTCACAGTCATTGCACTTGTATAATTTCTATGAAGCAACTGTTAAAGGATTaGCCACAAATGTTGCACTTA | + |
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Preference number: 5 (lower is better) Translates to: NGRNRTCHSHCTCIISMKQLLKD*PQMLHL Trigger: TAAGTGCAACATTTGTGGCAAATCCTTTAACAGTTG...CTTCATAGAAATTATACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS-3UTR CAA 90 bp | ATGATGTTCTCCAGGAGTAAAGCACTTATAAAAAGATTTGTCACATGCCTTACACATTGGTTAAAGGATTaGCCACAAATGTTGCACTTG | + |
|
Preference number: 5 (lower is better) Translates to: MMFSRSKALIKRFVTCLTHWLKD*PQMLHL Trigger: CAAGTGCAACATTTGTGGCAAATCCTTTAACCAATG...TGTAAGGCATGTGACAAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS TCA 72 bp | CGCTCCAGGATGCAAATTCTGATGGACTTTAAGGGATaGCAAGTAAGGAAACGACATTCCACATTCTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: RSRMQILMDFKG*QVRKRHSTFSA Trigger: TGCAGAGAATGTGGAATGTCGTTTCCTTACTTGTCATCCCTTAAAGTCCATCAGAATTTGCATCCTGGAGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS CAA 72 bp | CCCACACTGGTGTGGTTTTTCTCCAATGTAGTTTATTaGTTGCATCAGTCTGTGTGTAGAGCTGAAATGCTC | + |
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Preference number: 6 (lower is better) Translates to: PTLVWFFSNVVY*LHQSVCRAEML Trigger: GAGCATTTCAGCTCTACACACAGACTGATGCAACAAATAAACTACATTGGAGAAAAACCACACCAGTGTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS CAA 72 bp | TCTGTGTGTAGAGCTGAAATGCTCATCATATTCTTCTaGTCTGTGCTCTTTCTTTGCAGTATAGAGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: SVCRAEMLIIFF*SVLFLCSIESL Trigger: CAGAGACTCTATACTGCAAAGAAAGAGCACAGACAAGAAGAATATGATGAGCATTTCAGCTCTACACACAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS CAA 90 bp | TTCTTCTTGTCTGTGCTCTTTCTTTGCAGTATAGAGTCTCTGATCTaGACTAATGTTGGAACGCAAACTGAAAGTTTTCTCACAGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: FFLSVLFLCSIESLI*TNVGTQTESFLTVF Trigger: AAACACTGTGAGAAAACTTTCAGTTTGCGTTCCAACATTAGTCAAGATCAGAGACTCTATACTGCAAAGAAAGAGCACAGACAAGAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS GCA 72 bp | TTTATTTGTTGCATCAGTCTGTGTGTAGAGCTGAAATaGTCATCATATTCTTCTTGTCTGTGCTCTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FICCISLCVELK*SSYSSCLCSFF Trigger: AAAGAAAGAGCACAGACAAGAAGAATATGATGAGCATTTCAGCTCTACACACAGACTGATGCAACAAATAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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| CDS CAA 72 bp | TGTATGAAGTCTTTGGTGTGTTTTAAGATTTGCACATaGTCTAAAGGATCTGTCACAAACATTGCACGTGTA | + |
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Preference number: 6 (lower is better) Translates to: CMKSLVCFKICT*SKGSVTNIARV Trigger: TACACGTGCAATGTTTGTGACAGATCCTTTAGACAATGTGCAAATCTTAAAACACACCAAAGACTTCATACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056107.11 ENSMUST00000162659.2 |
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