RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP652 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075595

Ensembl transcript IDs: ENSMUST00000091565.5, ENSMUST00000107717.8, ENSMUST00000133070.8, ENSMUST00000148945.8

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCGCAGCGTCAGCAGTCCCCGCGCGTCGGGCCCCGACGGGTTGCTaGGGATGCGGCGGAATAAACTGTGGTGGCCAGCGGCACGCAGGG +
Preference number: 1 (lower is better)
Translates to: AAASAVPARRAPTGC*GCGGINCGGQRHAG
Trigger: CCCTGCGTGCCGCTGGCCACCACAGTTTATTCCGCCGCATCCTCAGCAACCCGTCGGGGCCCGACGCGCGGGGACTGCTGACGCTGCGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp CTAGGAGACCACCCCGGATCCCTGAGCCGGTGCAGCTCCCAGCCGTaGCAGACGGCAAGCTCTCCGCTGCCTCCTCTGCCTCTTCCTTGG +
Preference number: 1 (lower is better)
Translates to: LGDHPGSLSRCSSQP*QTASSPLPPLPLPW
Trigger: CCAAGGAAGAGGCAGAGGAGGCAGCGGAGAGCTTGCCGTCTGGCACGGCTGGGAGCTGCACCGGCTCAGGGATCCGGGGTGGTCTCCTAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp ACCCTACTCCACTCCCTAGGAGACCACCCCGGATCCCTGAGCCGGTaGAGCTCCCAGCCGTGCCAGACGGCAAGCTCTCCGCTGCCTCCT +
Preference number: 1 (lower is better)
Translates to: TLLHSLGDHPGSLSR*SSQPCQTASSPLPP
Trigger: AGGAGGCAGCGGAGAGCTTGCCGTCTGGCACGGCTGGGAGCTGCACCGGCTCAGGGATCCGGGGTGGTCTCCTAGGGAGTGGAGTAGGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp CTCCTCCACCGTTGTCTGCCGAGGTCTTCTTGCCGCCCCCTCCGCTaGAGGTGTCCCAGCCCCCTCTGGGTAAGATGGGTCCTGCCTTCT +
Preference number: 1 (lower is better)
Translates to: LLHRCLPRSSCRPLR*RCPSPLWVRWVLPS
Trigger: AGAAGGCAGGACCCATCTTACCCAGAGGGGGCTGGGACACCTCCAGCGGAGGGGGCGGCAAGAAGACCTCGGCAGACAACGGTGGAGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp AGTCGTCGCTGTTCTCGTCCACGATGGTCTCATCGAAGTCGAAGGTaGGGAGGAAGCGAGGCGCGCCCGGCGCAGCCATCCTGCCGTCCT +
Preference number: 1 (lower is better)
Translates to: SRRCSRPRWSHRSRR*GGSEARPAQPSCRP
Trigger: AGGACGGCAGGATGGCTGCGCCGGGCGCGCCTCGCTTCCTCCTCACCTTCGACTTCGATGAGACCATCGTGGACGAGAACAGCGACGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp ACTCGTGGTTCTCAACTGCTTCTTCCACCCCTCACCCTCAGCACCTaGCGCCTTGACGCTGCTGCGCCTGGCACCCAGCTTCACCCTCCG +
Preference number: 1 (lower is better)
Translates to: TRGSQLLLPPLTLST*RLDAAAPGTQLHPP
Trigger: CGGAGGGTGAAGCTGGGTGCCAGGCGCAGCAGCGTCAAGGCGCCAGGTGCTGAGGGTGAGGGGTGGAAGAAGCAGTTGAGAACCACGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp CCCCGAGAGCTGAAGAGGGCCAGGAGCCCAAAGACAAGGAACCTGTaGAGAGAGAGGGCCAGGCCTGCTCTGGGAGACCTTCCTACCCAC +
Preference number: 1 (lower is better)
Translates to: PRELKRARSPKTRNL*RERARPALGDLPTH
Trigger: GTGGGTAGGAAGGTCTCCCAGAGCAGGCCTGGCCCTCTCTCTGCACAGGTTCCTTGTCTTTGGGCTCCTGGCCCTCTTCAGCTCTCGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 90 bp CCCAACTTCCAGGAACCCGTTCCTCTCAGTTCGAGGGGCACTGCCTaGCTTCCAAGGGGTGCTCACCTCCCTGGAGGGAAGGCAGCAGAG +
Preference number: 1 (lower is better)
Translates to: PNFQEPVPLSSRGTA*LPRGAHLPGGKAAE
Trigger: CTCTGCTGCCTTCCCTCCAGGGAGGTGAGCACCCCTTGGAAGGCAGGCAGTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGAAGTTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp GCTGTCACGGACCGGGACCCTGTCTCGCAAGAGCATAAAGGCGCCTaGTACACCTGTTTCCGCCACGCTGGGGTGAGGCCTCAAGGCCAT +
Preference number: 1 (lower is better)
Translates to: AVTDRDPVSQEHKGA*YTCFRHAGVRPQGH
Trigger: ATGGCCTTGAGGCCTCACCCCAGCGTGGCGGAAACAGGTGTAGCAGGCGCCTTTATGCTCTTGCGAGACAGGGTCCCGGTCCGTGACAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp GCAGGAGCCCTGTTTGGCTATGAACTGCAACAAATCGCCCATGCCTaGCGACAGGGGGATGGTCTCGTAGACAGCGCGCAGGTCCCGGGG +
Preference number: 1 (lower is better)
Translates to: AGALFGYELQQIAHA*RQGDGLVDSAQVPG
Trigger: CCCCGGGACCTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCAGGCATGGGCGATTTGTTGCAGTTCATAGCCAAACAGGGCTCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp GGTGAGGCCTCAAGGCCATGCCAACCAGCCCTACCCAGCCACTCGTaGTTCTCAACTGCTTCTTCCACCCCTCACCCTCAGCACCTGGCG +
Preference number: 1 (lower is better)
Translates to: GEASRPCQPALPSHS*FSTASSTPHPQHLA
Trigger: CGCCAGGTGCTGAGGGTGAGGGGTGGAAGAAGCAGTTGAGAACCACGAGTGGCTGGGTAGGGCTGGTTGGCATGGCCTTGAGGCCTCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp AAGGCCATGCCAACCAGCCCTACCCAGCCACTCGTGGTTCTCAACTaGTTCTTCCACCCCTCACCCTCAGCACCTGGCGCCTTGACGCTG +
Preference number: 1 (lower is better)
Translates to: KAMPTSPTQPLVVLN*FFHPSPSAPGALTL
Trigger: CAGCGTCAAGGCGCCAGGTGCTGAGGGTGAGGGGTGGAAGAAGCAGTTGAGAACCACGAGTGGCTGGGTAGGGCTGGTTGGCATGGCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp GAGGGCACTGGATTCTTCCCAGGGAACTATGTGGAGCCCAGCTGCTaGCAGCCCAGGATCTATCCCTGCACCAACCCTGCACTGCCTCGG +
Preference number: 1 (lower is better)
Translates to: EGTGFFPGNYVEPSC*QPRIYPCTNPALPR
Trigger: CCGAGGCAGTGCAGGGTTGGTGCAGGGATAGATCCTGGGCTGTCAGCAGCTGGGCTCCACATAGTTCCCTGGGAAGAATCCAGTGCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp CCCAGCTTCACCCTCCGCCAGTCGCCCTTCCTCAACCCTAAACTCTaGTCAGCAGAGAACCCTCCCTCCTCACACCACCCTACTCCACTC +
Preference number: 1 (lower is better)
Translates to: PSFTLRQSPFLNPKL*SAENPPSSHHPTPL
Trigger: GAGTGGAGTAGGGTGGTGTGAGGAGGGAGGGTTCTCTGCTGAGCAGAGTTTAGGGTTGAGGAAGGGCGACTGGCGGAGGGTGAAGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp CTGCTACACCTGTTTCCGCCACGCTGGGGTGAGGCCTCAAGGCCATaGCAACCAGCCCTACCCAGCCACTCGTGGTTCTCAACTGCTTCT +
Preference number: 1 (lower is better)
Translates to: LLHLFPPRWGEASRP*QPALPSHSWFSTAS
Trigger: AGAAGCAGTTGAGAACCACGAGTGGCTGGGTAGGGCTGGTTGGCATGGCCTTGAGGCCTCACCCCAGCGTGGCGGAAACAGGTGTAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp AGTCACTGTGGCTGTGCAGAGGAAGTGGCCTTCAGACGGCGTCTGTaGTGCGGGTTGTTTTCTGTGGGACGGCTTTGGGGGACCTGCTGC +
Preference number: 1 (lower is better)
Translates to: SHCGCAEEVAFRRRL*CGLFSVGRLWGTCC
Trigger: GCAGCAGGTCCCCCAAAGCCGTCCCACAGAAAACAACCCGCAGCACAGACGCCGTCTGAAGGCCACTTCCTCTGCACAGCCACAGTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp AAGCTCTCCGCTGCCTCCTCTGCCTCTTCCTTGGCCTCGGCAGGGTaGGCACTTGAGTCTAGTGGGTGGGTAGACAGCAGGTGGATTTTG +
Preference number: 1 (lower is better)
Translates to: KLSAASSASSLASAG*ALESSGWVDSRWIL
Trigger: CAAAATCCACCTGCTGTCTACCCACCCACTAGACTCAAGTGCTCACCCTGCCGAGGCCAAGGAAGAGGCAGAGGAGGCAGCGGAGAGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp GCCCAAAGACAAGGAACCTGTGCAGAGAGAGGGCCAGGCCTGCTCTaGGAGACCTTCCTACCCACCTGGAGCAGAAAAAGTGAGAGAGCG +
Preference number: 1 (lower is better)
Translates to: AQRQGTCAERGPGLL*ETFLPTWSRKSERA
Trigger: CGCTCTCTCACTTTTTCTGCTCCAGGTGGGTAGGAAGGTCTCCCAGAGCAGGCCTGGCCCTCTCTCTGCACAGGTTCCTTGTCTTTGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 90 bp TCTGTCCTGCCCACCACTCACCCCCACCCACAACTGAAGGCCCAATaGCCTTCTTTACAGCACCCCTCACCGTCCCAGCTTGACCTTCAA +
Preference number: 1 (lower is better)
Translates to: SVLPTTHPHPQLKAQ*PSLQHPSPSQLDLQ
Trigger: TTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTCATTGGGCCTTCAGTTGTGGGTGGGGGTGAGTGGTGGGCAGGACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 90 bp GACCTAGTATTACAGCTCCTGTATCACCGTGGGCGGGTGCGTGCATaGCCGAGGGGACACCTCACAAGGTTCTCTTCTTGCCCCACAGTG +
Preference number: 1 (lower is better)
Translates to: DLVLQLLYHRGRVRA*PRGHLTRFSSCPTV
Trigger: CACTGTGGGGCAAGAAGAGAACCTTGTGAGGTGTCCCCTCGGTCATGCACGCACCCGCCCACGGTGATACAGGAGCTGTAATACTAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp CGTGTCCCAGATGTCAATCAACCCTATCGTTCTCCCTTCAGGACTTaGGCACGCAGCTGTCACGGACCGGGACCCTGTCTCGCAAGAGCA +
Preference number: 1 (lower is better)
Translates to: RVPDVNQPYRSPFRT*ARSCHGPGPCLARA
Trigger: TGCTCTTGCGAGACAGGGTCCCGGTCCGTGACAGCTGCGTGCTCAAGTCCTGAAGGGAGAACGATAGGGTTGATTGACATCTGGGACACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp ACGCAGCCATCCTTCTCGAAGGGTATGGGTCTTCCCAGTGACAGGTaGCTATGGCTCTTCGCTATCCAAACGCCCGGGACACTCATCCGC +
Preference number: 1 (lower is better)
Translates to: TQPSFSKGMGLPSDR*LWLFAIQTPGTLIR
Trigger: GCGGATGAGTGTCCCGGGCGTTTGGATAGCGAAGAGCCATAGTCACCTGTCACTGGGAAGACCCATACCCTTCGAGAAGGATGGCTGCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148945.8
3UTR GCA 90 bp AACTCCTGGGGCGCTGCAGCACATGTGGGCCAGCACAGCACACACTaGAGCTCTTCCCCAAGTACACTGTCAACCCTGAGTCTGAGTCTT +
Preference number: 1 (lower is better)
Translates to: NSWGAAAHVGQHSTH*SSSPSTLSTLSLSL
Trigger: AAGACTCAGACTCAGGGTTGACAGTGTACTTGGGGAAGAGCTGCAGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGCCCCAGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 90 bp TCTGGCTCCCTGGCTCCCTACATGGTAAGGCAGATGGAGAGGCTGTaGTCGTTCACGGGAGCCAGAGACACAGAAACAAGCCACTGCTCT +
Preference number: 1 (lower is better)
Translates to: SGSLAPYMVRQMERL*SFTGARDTETSHCS
Trigger: AGAGCAGTGGCTTGTTTCTGTGTCTCTGGCTCCCGTGAACGAGCACAGCCTCTCCATCTGCCTTACCATGTAGGGAGCCAGGGAGCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CCA 90 bp GGTGGGCCTCTCGAGCCCCAGGAAGCCAGCTTCCACAGTCAAAGCTaGACTAAGGACCTGTCTACCTCTTGGGCTGTGAACTGTGTTCAG +
Preference number: 1 (lower is better)
Translates to: GGPLEPQEASFHSQS*TKDLSTSWAVNCVQ
Trigger: CTGAACACAGTTCACAGCCCAAGAGGTAGACAGGTCCTTAGTCCAGCTTTGACTGTGGAAGCTGGCTTCCTGGGGCTCGAGAGGCCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp CTGCTGCCTCCGCCCCCACCAGGTTTTGGACCAGATGAGCCCAGCTaGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAACTCTT +
Preference number: 1 (lower is better)
Translates to: LLPPPPPGFGPDEPS*VPASYLEKGTFATL
Trigger: AAGAGTTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTGGTCCAAAACCTGGTGGGGGCGGAGGCAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp AGGCCTGCTCTGGGAGACCTTCCTACCCACCTGGAGCAGAAAAAGTaGGAGAGCGTGTGCTTACACATGAGAGGTCCCCACTGCTGTCAC +
Preference number: 1 (lower is better)
Translates to: RPALGDLPTHLEQKK*ESVCLHMRGPHCCH
Trigger: GTGACAGCAGTGGGGACCTCTCATGTGTAAGCACACGCTCTCTCACTTTTTCTGCTCCAGGTGGGTAGGAAGGTCTCCCAGAGCAGGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CCA 90 bp GAACGGACACACTGGCGACTTTTATGGCTTCCACAGAGAGTGCAGTaGGGACCTCTGGGCTGCTTTAGCGAGGTAGTTCCGGGTTGGAAG +
Preference number: 1 (lower is better)
Translates to: ERTHWRLLWLPQRVQ*GPLGCFSEVVPGWK
Trigger: CTTCCAACCCGGAACTACCTCGCTAAAGCAGCCCAGAGGTCCCCACTGCACTCTCTGTGGAAGCCATAAAAGTCGCCAGTGTGTCCGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp ACGCAGCCATCCTTCTCGAAGGGTATGGGTCTTCCCAGTGACAGGTaGCTATGGCTCTTCGCTATCCAAACGCCCGGGACACTGGAGAAA +
Preference number: 1 (lower is better)
Translates to: TQPSFSKGMGLPSDR*LWLFAIQTPGTLEK
Trigger: TTTCTCCAGTGTCCCGGGCGTTTGGATAGCGAAGAGCCATAGTCACCTGTCACTGGGAAGACCCATACCCTTCGAGAAGGATGGCTGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp AGCCCCCTCTGGGTAAGATGGGTCCTGCCTTCTCAGTATTCACTTTaGGTCTCTCTCATTCAGCCCTGTGCTCCTCAGGGACCCCAGAGA +
Preference number: 1 (lower is better)
Translates to: SPLWVRWVLPSQYSL*VSLIQPCAPQGPQR
Trigger: TCTCTGGGGTCCCTGAGGAGCACAGGGCTGAATGAGAGAGACTCAAAGTGAATACTGAGAAGGCAGGACCCATCTTACCCAGAGGGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp ACAGGTAACAAGAATGTAACAGGTACTGTAGAACTCCTGGGGCGCTaGAGCACATGTGGGCCAGCACAGCACACACTGCAGCTCTTCCCC +
Preference number: 1 (lower is better)
Translates to: TGNKNVTGTVELLGR*STCGPAQHTLQLFP
Trigger: GGGGAAGAGCTGCAGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGCCCCAGGAGTTCTACAGTACCTGTTACATTCTTGTTACCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 90 bp CGACTTTTATGGCTTCCACAGAGAGTGCAGTGGGGACCTCTGGGCTaGTTTAGCGAGGTAGTTCCGGGTTGGAAGGTCAGCATTGCTTCC +
Preference number: 1 (lower is better)
Translates to: RLLWLPQRVQWGPLG*FSEVVPGWKVSIAS
Trigger: GGAAGCAATGCTGACCTTCCAACCCGGAACTACCTCGCTAAAGCAGCCCAGAGGTCCCCACTGCACTCTCTGTGGAAGCCATAAAAGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp GAATGTAACAGGTACTGTAGAACTCCTGGGGCGCTGCAGCACATGTaGGCCAGCACAGCACACACTGCAGCTCTTCCCCAAGTACACTGT +
Preference number: 1 (lower is better)
Translates to: ECNRYCRTPGALQHM*ASTAHTAALPQVHC
Trigger: ACAGTGTACTTGGGGAAGAGCTGCAGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGCCCCAGGAGTTCTACAGTACCTGTTACATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp AAGGAAGCAAGGCGCAGCCAGCGCAGCGGTAGTGTAGGGTTGCGTTaGCTGAAGCAAGATCAAGACCTAGAGCTGTCTTCTGAGAGCATC +
Preference number: 1 (lower is better)
Translates to: KEARRSQRSGSVGLR*LKQDQDLELSSESI
Trigger: GATGCTCTCAGAAGACAGCTCTAGGTCTTGATCTTGCTTCAGCCAACGCAACCCTACACTACCGCTGCGCTGGCTGCGCCTTGCTTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp GTGTATTTTCCAATGCAGCCAGAGTCACAGAGCCTACTCGGGGTGTaGTGGAGACCCTGTTTCTGGCTCCCTGGCTCCCTACATGGTAAG +
Preference number: 1 (lower is better)
Translates to: VYFPMQPESQSLLGV*WRPCFWLPGSLHGK
Trigger: CTTACCATGTAGGGAGCCAGGGAGCCAGAAACAGGGTCTCCATCACACCCCGAGTAGGCTCTGTGACTCTGGCTGCATTGGAAAATACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 90 bp CCTCTGGAGACACTGCAAAGGACGCATTCAATATTCCCCGAGAGCTaGAGAGGGCCAGGAGCCCAAAGACAAGGAACCTGTGCAGAGAGA +
Preference number: 1 (lower is better)
Translates to: PLETLQRTHSIFPES*RGPGAQRQGTCAER
Trigger: TCTCTCTGCACAGGTTCCTTGTCTTTGGGCTCCTGGCCCTCTTCAGCTCTCGGGGAATATTGAATGCGTCCTTTGCAGTGTCTCCAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 90 bp GCCAGACAGGGAGTGATGGAAAGGGAACACGGAAGCCCTGCAGTCTaGCCCAGAAGGACTCTCAATCTCAACCCTCTTTACTCTTCCCAT +
Preference number: 1 (lower is better)
Translates to: ARQGVMEREHGSPAV*PRRTLNLNPLYSSH
Trigger: ATGGGAAGAGTAAAGAGGGTTGAGATTGAGAGTCCTTCTGGGGCAGACTGCAGGGCTTCCGTGTTCCCTTTCCATCACTCCCTGTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp CTAGAAGGCCAGACAGGGAGTGATGGAAAGGGAACACGGAAGCCCTaGAGTCTGCCCCAGAAGGACTCTCAATCTCAACCCTCTTTACTC +
Preference number: 1 (lower is better)
Translates to: LEGQTGSDGKGTRKP*SLPQKDSQSQPSLL
Trigger: GAGTAAAGAGGGTTGAGATTGAGAGTCCTTCTGGGGCAGACTGCAGGGCTTCCGTGTTCCCTTTCCATCACTCCCTGTCTGGCCTTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp GCCAGCTTCCACAGTCAAAGCTGGACTAAGGACCTGTCTACCTCTTaGGCTGTGAACTGTGTTCAGTCCCTGCTCCATACAGCAGTGGGA +
Preference number: 1 (lower is better)
Translates to: ASFHSQSWTKDLSTS*AVNCVQSLLHTAVG
Trigger: TCCCACTGCTGTATGGAGCAGGGACTGAACACAGTTCACAGCCCAAGAGGTAGACAGGTCCTTAGTCCAGCTTTGACTGTGGAAGCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp TCCACAGTCAAAGCTGGACTAAGGACCTGTCTACCTCTTGGGCTGTaGACTGTGTTCAGTCCCTGCTCCATACAGCAGTGGGAAGAGGGT +
Preference number: 1 (lower is better)
Translates to: STVKAGLRTCLPLGL*TVFSPCSIQQWEEG
Trigger: ACCCTCTTCCCACTGCTGTATGGAGCAGGGACTGAACACAGTTCACAGCCCAAGAGGTAGACAGGTCCTTAGTCCAGCTTTGACTGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 90 bp GAACCCTGCTGGGAAAGAGCAGCTGGCCTGCTATTGAGTAGTACCTaGCTGTTCCAAAGCCCCTCTACGCACGACCTAGTATTACAGCTC +
Preference number: 1 (lower is better)
Translates to: EPCWERAAGLLLSST*LFQSPSTHDLVLQL
Trigger: GAGCTGTAATACTAGGTCGTGCGTAGAGGGGCTTTGGAACAGTCAGGTACTACTCAATAGCAGGCCAGCTGCTCTTTCCCAGCAGGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp GAAAGGACCAGGAGAAAATCAGCAGGAGGCCCTTCCACAGGAAAATaGTTCCTGACCCTGCAAGGTAAACAGCCTCAGGCCTGTGCTTTC +
Preference number: 1 (lower is better)
Translates to: ERTRRKSAGGPSTGK*FLTLQGKQPQACAF
Trigger: GAAAGCACAGGCCTGAGGCTGTTTACCTTGCAGGGTCAGGAAGCATTTTCCTGTGGAAGGGCCTCCTGCTGATTTTCTCCTGGTCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 90 bp TCTGAACCCCTGCTCCCAGCCCACAAGCAGACTGAATTCCAGATATaGCCGGAGGAGCATAGCAAAGCGAAAGGAAAGAGGAGGGTAGTA +
Preference number: 1 (lower is better)
Translates to: SEPLLPAHKQTEFQI*PEEHSKAKGKRRVV
Trigger: TACTACCCTCCTCTTTCCTTTCGCTTTGCTATGCTCCTCCGGGCATATCTGGAATTCAGTCTGCTTGTGGGCTGGGAGCAGGGGTTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 90 bp GGACTTCCTTTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGTaGGGACACCCGGACACCTGCTATCTACCCTGGTCACTGCTTCCC +
Preference number: 1 (lower is better)
Translates to: GLPLRNEKVQVTSGL*GHPDTCYLPWSLLP
Trigger: GGGAAGCAGTGACCAGGGTAGATAGCAGGTGTCCGGGTGTCCCCACAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAAAGGAAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 90 bp ATTGGTAGAGTTAACACAGGGAAGCATATCATCACGCCGGGGGTCTaGCAGGATGCTAGGGAAAAGATGGCTAAGGGAAGCCAGGCATCT +
Preference number: 1 (lower is better)
Translates to: IGRVNTGKHIITPGV*QDAREKMAKGSQAS
Trigger: AGATGCCTGGCTTCCCTTAGCCATCTTTTCCCTAGCATCCTGTCAGACCCCCGGCGTGATGATATGCTTCCCTGTGTTAACTCTACCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 90 bp AAATCAGAGCTAAGGACCACCAAGCCACCCAGATCCCTGAGAATTTaGGATAGTGTGGGGTTGCAAAGGGCAACTCAGTCACTGTGGCTG +
Preference number: 1 (lower is better)
Translates to: KSELRTTKPPRSLRI*DSVGLQRATQSLWL
Trigger: CAGCCACAGTGACTGAGTTGCCCTTTGCAACCCCACACTATCTCAAATTCTCAGGGATCTGGGTGGCTTGGTGGTCCTTAGCTCTGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 90 bp CACTTGGGAATGATTTCTGCACCACAGACTCTACCTCTTCCAGTGTaGATGCCGCTCTCAATCCAAACAGCCAGTGGGGCATTCCAATGT +
Preference number: 1 (lower is better)
Translates to: HLGMISAPQTLPLPV*MPLSIQTASGAFQC
Trigger: ACATTGGAATGCCCCACTGGCTGTTTGGATTGAGAGCGGCATGCACACTGGAAGAGGTAGAGTCTGTGGTGCAGAAATCATTCCCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp AAGATGCTGCGGTCTCCCTCCTCTGGAGAGGGCAGGCAACAGTATTaGGGGTTTCCTCTCACTACATTTTTAATGGCAGATACCAGTCAG +
Preference number: 1 (lower is better)
Translates to: KMLRSPSSGEGRQQY*GFPLTTFLMADTSQ
Trigger: CTGACTGGTATCTGCCATTAAAAATGTAGTGAGAGGAAACCCCCAATACTGTTGCCTGCCCTCTCCAGAGGAGGGAGACCGCAGCATCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp GGACGCTGTCCCGACACATCAACCAGAAGCCCTGAGTTAACAGGGTaGAGAGAGACCCACTTTATAACAACACAGCCTCTACTAAGGGAA +
Preference number: 1 (lower is better)
Translates to: GRCPDTSTRSPELTG*RETHFITTQPLLRE
Trigger: TTCCCTTAGTAGAGGCTGTGTTGTTATAAAGTGGGTCTCTCTCCACCCTGTTAACTCAGGGCTTCTGGTTGATGTGTCGGGACAGCGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp CTAGAAGGTGAAGGACAAATGGCTCTAGTCCAGAAGTGGTGTGGGTaGGGGAATAAGATACAAAGAAGCTACAAAGGTGACCCTGCCGTG +
Preference number: 1 (lower is better)
Translates to: LEGEGQMALVQKWCG*GNKIQRSYKGDPAV
Trigger: CACGGCAGGGTCACCTTTGTAGCTTCTTTGTATCTTATTCCCCCACCCACACCACTTCTGGACTAGAGCCATTTGTCCTTCACCTTCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp GAATCCATAGAGTACTCAAAGGGACACCAACACTGGCTGTGTCAGTaGGCCCAATGGACTGAATGCCCAGCAGAGACATCCAATTCATTG +
Preference number: 1 (lower is better)
Translates to: ESIEYSKGHQHWLCQ*AQWTECPAETSNSL
Trigger: CAATGAATTGGATGTCTCTGCTGGGCATTCAGTCCATTGGGCTCACTGACACAGCCAGTGTTGGTGTCCCTTTGAGTACTCTATGGATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp CCTAGCCAGGTGTTAGAGTTTGTAGTTAAGCCCTTGGGAAGAGGGTaGATTCCGATGCTCAGGAGAACGACTCAATCAGAGGTAGGATTC +
Preference number: 1 (lower is better)
Translates to: PSQVLEFVVKPLGRG*IPMLRRTTQSEVGF
Trigger: GAATCCTACCTCTGATTGAGTCGTTCTCCTGAGCATCGGAATTCACCCTCTTCCCAAGGGCTTAACTACAAACTCTAACACCTGGCTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp TGTGTGAAACGCAGCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTaGACCGAATTCATTGCAGTACACAGTGATATAGTTAATGCTCTG +
Preference number: 1 (lower is better)
Translates to: CVKRSQLDSAASTKS*TEFIAVHSDIVNAL
Trigger: CAGAGCATTAACTATATCACTGTGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGCTGCGTTTCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR GCA 90 bp AGGTTTAGCCGTGAGATATGGATCTGTCTACATGGAAGGTGGATTTaGAGACTTCCCATAAGCTGCAGAGGAGACTGTGGAGGTAAATGG +
Preference number: 1 (lower is better)
Translates to: RFSREIWICLHGRWI*RLPISCRGDCGGKW
Trigger: CCATTTACCTCCACAGTCTCCTCTGCAGCTTATGGGAAGTCTGCAAATCCACCTTCCATGTAGACAGATCCATATCTCACGGCTAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp GGTGGGGGAATAAGATACAAAGAAGCTACAAAGGTGACCCTGCCGTaGATGACAGGGCAACAATACACAACTGTGTTCACAATTCCTAGC +
Preference number: 1 (lower is better)
Translates to: GGGIRYKEATKVTLP*MTGQQYTTVFTIPS
Trigger: GCTAGGAATTGTGAACACAGTTGTGTATTGTTGCCCTGTCATTCACGGCAGGGTCACCTTTGTAGCTTCTTTGTATCTTATTCCCCCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp GGTGAAAGACTAGAAGGTGAAGGACAAATGGCTCTAGTCCAGAAGTaGTGTGGGTGGGGGAATAAGATACAAAGAAGCTACAAAGGTGAC +
Preference number: 1 (lower is better)
Translates to: GERLEGEGQMALVQK*CGWGNKIQRSYKGD
Trigger: GTCACCTTTGTAGCTTCTTTGTATCTTATTCCCCCACCCACACCACTTCTGGACTAGAGCCATTTGTCCTTCACCTTCTAGTCTTTCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp TATTATAGGTTTAGCCGTGAGATATGGATCTGTCTACATGGAAGGTaGATTTGCAGACTTCCCATAAGCTGCAGAGGAGACTGTGGAGGT +
Preference number: 1 (lower is better)
Translates to: YYRFSREIWICLHGR*ICRLPISCRGDCGG
Trigger: ACCTCCACAGTCTCCTCTGCAGCTTATGGGAAGTCTGCAAATCCACCTTCCATGTAGACAGATCCATATCTCACGGCTAAACCTATAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp CATGCCGCTCTCAATCCAAACAGCCAGTGGGGCATTCCAATGTCTTaGCTTCTGTATTTTCAACCCAATTCTCACAATTTGGTATTGTCC +
Preference number: 1 (lower is better)
Translates to: HAALNPNSQWGIPMS*LLYFQPNSHNLVLS
Trigger: GGACAATACCAAATTGTGAGAATTGGGTTGAAAATACAGAAGTCAAGACATTGGAATGCCCCACTGGCTGTTTGGATTGAGAGCGGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp ACAAAGAAGAAAATTCCCATCTTCTCTATAATGCTTGATATTGTGTaGAACGCAGCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAA +
Preference number: 1 (lower is better)
Translates to: TKKKIPIFSIMLDIV*NAASSTLQPAPKAE
Trigger: TTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGCTGCGTTTCACACAATATCAAGCATTATAGAGAAGATGGGAATTTTCTTCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR GCA 90 bp GTTGATAAAATGGTTAGCTCTAACATACTCTCTCTTCTCATGGCATaGTACACATGCGGAACAGCATCAAAATCTCTAGCATGTGGACCA +
Preference number: 1 (lower is better)
Translates to: VDKMVSSNILSLLMA*YTCGTASKSLACGP
Trigger: TGGTCCACATGCTAGAGATTTTGATGCTGTTCCGCATGTGTAGCATGCCATGAGAAGAGAGAGTATGTTAGAGCTAACCATTTTATCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 90 bp TTTAGGAGGGAACTATCAACCCATTACACAGCACAAACTTTAATTTaGGACACGAGAGACCAGCCAGTTGCTAAAGTAATCTTTACAGTG +
Preference number: 1 (lower is better)
Translates to: FRRELSTHYTAQTLI*DTRDQPVAKVIFTV
Trigger: CACTGTAAAGATTACTTTAGCAACTGGCTGGTCTCTCGTGTCCCAAATTAAAGTTTGTGCTGTGTAATGGGTTGATAGTTCCCTCCTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 90 bp CATTCATTAAAATTCATAGCTAGAAGCTGGAGGGAAAGTGTGTCCTaGGAGACTTTCCTGACTCCACACACAATGTTTCCTATGTTTACA +
Preference number: 1 (lower is better)
Translates to: HSLKFIARSWRESVS*ETFLTPHTMFPMFT
Trigger: TGTAAACATAGGAAACATTGTGTGTGGAGTCAGGAAAGTCTCTCAGGACACACTTTCCCTCCAGCTTCTAGCTATGAATTTTAATGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CCA 90 bp ACCTGGCGCCTTGACGCTGCTGCGCCTGGCACCCAGCTTCACCCTCCGCCAGTCTGCCGCCCCCTCCGCTaGAGGTGTCCCAGCCCCCTC +
Preference number: 2 (lower is better)
Translates to: TWRLDAAAPGTQLHPPPVCRPLR*RCPSPL
Trigger: GAGGGGGCTGGGACACCTCCAGCGGAGGGGGCGGCA...GACTGGCGGAGGGTGAAGCTGGGTGCCAGGCGCAGCAGCGTCAAGGCGCCAGGT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp CAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCTGGGCCAAGCCCTCTCCGTCAGGCCAGTCTaGGGGCTCACCAGGACAACG +
Preference number: 2 (lower is better)
Translates to: QSPPGSTHHAASSLGQALSVRPV*GLTRTT
Trigger: CGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGA...GAGGGCTTGGCCCAGGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR-3UTR TCA 90 bp TGGCGACAGGGGGATGGTCTCGTAGACAGCGCGCAGGTCCCGGGGCCGTACACCCATCGAAGTCGAAGGTaGGGAGGAAGCGAGGCGCGC +
Preference number: 2 (lower is better)
Translates to: WRQGDGLVDSAQVPGPYTHRSRR*GGSEAR
Trigger: GCGCGCCTCGCTTCCTCCTCACCTTCGACTTCGATG...GGTGTACGGCCCCGGGACCTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CCA 90 bp GCAGATGTTGGCGCACATCGGCGGCTGTTTCCCAGGGCACCACGTGGGCGCGGAGAGCAGCTGTGCGTGTaGAAGGGCCGCAGCGTCAGC +
Preference number: 2 (lower is better)
Translates to: ADVGAHRRLFPRAPRGRGEQLCV*KGRSVS
Trigger: GCTGACGCTGCGGCCCTTCCACACGCACAGCTGCTC...TCCGCGCCCACGTGGTGCCCTGGGAAACAGCCGCCGATGTGCGCCAACATCTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp GTTCTCAACTGCTTCTTCCACCCCTCACCCTCAGCACCTGGCGCCTaGACGCTGCTGCGCCTGGCACCCAGCTTCACCCTCCGCCAGTCG +
Preference number: 2 (lower is better)
Translates to: VLNCFFHPSPSAPGA*TLLRLAPSFTLRQS
Trigger: CGACTGGCGGAGGGTGAAGCTGGGTGCCAGGCGCAGCAGCGTCAAGGCGCCAGGTGCTGAGGGTGAGGGGTGGAAGAAGCAGTTGAGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp AGATGTTCCTTCTCCCAACTTCCAGGAACCCGTTCCTCTCAGTTCGAGGGGCACCCGGCGCAGCCATCCTaGCGTCCTGGGAGCAGGGGG +
Preference number: 2 (lower is better)
Translates to: RCSFSQLPGTRSSQFEGHPAQPS*RPGSRG
Trigger: CCCCCTGCTCCCAGGACGGCAGGATGGCTGCGCCGG...GTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGAAGTTGGGAGAAGGAACATCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp GCATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCACAGCCTCAGGCCTGTaGTTTCCTGAGTGGATAGCC +
Preference number: 2 (lower is better)
Translates to: ASGPVQSPPGSTHHAASSTASGL*FPEWIA
Trigger: GGCTATCCACTCAGGAAAGCACAGGCCTGAGGCTGT...GGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR-3UTR CCA 90 bp ACCTGGCGCCTTGACGCTGCTGCGCCTGGCACCCAGCTTCACCCTCCGCCAGTCGACCTGTCTACCTCTTaGGCTGTGAACTGTGTTCAG +
Preference number: 2 (lower is better)
Translates to: TWRLDAAAPGTQLHPPPVDLSTS*AVNCVQ
Trigger: CTGAACACAGTTCACAGCCCAAGAGGTAGACAGGTC...GACTGGCGGAGGGTGAAGCTGGGTGCCAGGCGCAGCAGCGTCAAGGCGCCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp AGATCTTACTATGAGGTCTGGGGACCCCTCTGGGACGCTGGGCTAGAAGGCGTCAGCTCTAGAGGGGGATaGACTGGGGCTGCTGCCTCC +
Preference number: 2 (lower is better)
Translates to: RSYYEVWGPLWDAGLEGVSSRGG*TGAAAS
Trigger: GGAGGCAGCAGCCCCAGTTCATCCCCCTCTAGAGCT...GACGCCTTCTAGCCCAGCGTCCCAGAGGGGTCCCCAGACCTCATAGTAAGATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp TGGCACCCAGCTTCACCCTCCGCCAGTCGCCCTTCCTCAACCCTAAACTCTGCTCGGCAAGCTCTCCGCTaGCTCCTCTGCCTCTTCCTT +
Preference number: 2 (lower is better)
Translates to: WHPASPSASRPSSTLNSARQALR*LLCLFL
Trigger: AAGGAAGAGGCAGAGGAGGCAGCGGAGAGCTTGCCG...AGCAGAGTTTAGGGTTGAGGAAGGGCGACTGGCGGAGGGTGAAGCTGGGTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp AGATCTTACTATGAGGTCTGGGGACCCCTCTGGGACGCTGGGCTAGAAGGCGTCCTCGGATGGCTGGTGTaGGGGTGTCAGTTCAGAGGG +
Preference number: 2 (lower is better)
Translates to: RSYYEVWGPLWDAGLEGVLGWLV*GCQFRG
Trigger: CCCTCTGAACTGACACCCTCACACCAGCCATCCGAG...GACGCCTTCTAGCCCAGCGTCCCAGAGGGGTCCCCAGACCTCATAGTAAGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp GATCTATCCCTGCACCAACCCTGCACTGCCTCGGTGGGCCTCTCGAGCCCCAGGATCTTCAGCACCTGTTaGAGATGTTGGCGCACATCG +
Preference number: 2 (lower is better)
Translates to: DLSLHQPCTASVGLSSPRIFSTC*RCWRTS
Trigger: CGATGTGCGCCAACATCTGCAACAGGTGCTGAAGAT...CCTGGGGCTCGAGAGGCCCACCGAGGCAGTGCAGGGTTGGTGCAGGGATAGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp AGATCTTACTATGAGGTCTGGGGACCCCTCTGGGACGCTGGGCTAGAAGGCGTCACGGCTCTGAACCCCTaGTCCCAGCCCACAAGCAGA +
Preference number: 2 (lower is better)
Translates to: RSYYEVWGPLWDAGLEGVTALNP*SQPTSR
Trigger: TCTGCTTGTGGGCTGGGAGCAGGGGTTCAGAGCCGT...GACGCCTTCTAGCCCAGCGTCCCAGAGGGGTCCCCAGACCTCATAGTAAGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp CCGTGTCCCAGATGTCAATCAACCCTATCGTTCTCCCTTCAGGACTaGAGCACGCAGCTGTCACGGACCGGGACCCTGTCTCGCAAGAGC +
Preference number: 2 (lower is better)
Translates to: PCPRCQSTLSFSLQD*STQLSRTGTLSRKS
Trigger: GCTCTTGCGAGACAGGGTCCCGGTCCGTGACAGCTGCGTGCTCAAGTCCTGAAGGGAGAACGATAGGGTTGATTGACATCTGGGACACGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp GCATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCGCTTCCCTCCCTTTTTaGGCATCTCCATCACCTATA +
Preference number: 2 (lower is better)
Translates to: ASGPVQSPPGSTHHAASSASLPF*ASPSPI
Trigger: TATAGGTGATGGAGATGCTCAAAAAGGGAGGGAAGC...GGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR-3UTR TCA 90 bp CAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCTGGGCCAAGCCCTCGGGACACTCATCCGCTaGTATGAAATTATAAAATCC +
Preference number: 2 (lower is better)
Translates to: QSPPGSTHHAASSLGQALGTLIR*YEIIKS
Trigger: GGATTTTATAATTTCATATCAGCGGATGAGTGTCCC...GAGGGCTTGGCCCAGGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148945.8
3UTR-3UTR CCA 90 bp ACAGTGGTGACCCTGTACCCATACACCCGGCAAAAGGACAATGAGCTCTCCTTCGCCATCCTGCCGTCCTaGGAGCAGGGGGAAGAGGAG +
Preference number: 2 (lower is better)
Translates to: TVVTLYPYTRQKDNELSFAILPS*EQGEEE
Trigger: CTCCTCTTCCCCCTGCTCCCAGGACGGCAGGATGGC...GAAGGAGAGCTCATTGTCCTTTTGCCGGGTGTATGGGTACAGGGTCACCACTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp GTCCCGGGGCCGTACACCCTGCTCACCCAGGTACTTAAAGACTCGTaGCATGTACTCATTGTAGTAGCCCTCGCGATAGGTGGCACGCAG +
Preference number: 2 (lower is better)
Translates to: VPGPYTLLTQVLKDS*HVLIVVALAIGGTQ
Trigger: CTGCGTGCCACCTATCGCGAGGGCTACTACAATGAGTACATGCAACGAGTCTTTAAGTACCTGGGTGAGCAGGGTGTACGGCCCCGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp GGGCCGTACACCCTGCTCACCCAGGTACTTAAAGACTCGTTGCATGTACTCATTCGGCCAGGGAGAAGCTaGTTAGCGGGCCACAGCCAG +
Preference number: 2 (lower is better)
Translates to: GPYTLLTQVLKDSLHVLIRPGRS*LAGHSQ
Trigger: CTGGCTGTGGCCCGCTAATCAGCTTCTCCCTGGCCG...AATGAGTACATGCAACGAGTCTTTAAGTACCTGGGTGAGCAGGGTGTACGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp GGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATTGCACCCCATCATTCCCAGAAGCAGAGTTaGCCCTGCCTCCTCCCCCAG +
Preference number: 2 (lower is better)
Translates to: GEVPVSEVSLGFGIAPHHSQKQS*PCLLPQ
Trigger: CTGGGGGAGGAGGCAGGGGCAACTCTGCTTCTGGGA...ATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp CAGCCCCCTCTGGGTAAGATGGGTCCTGCCTTCTCAGTATTCACTTaGAGTCTCTCTCATTCAGCCCTGTGCTCCTCAGGGACCCCAGAG +
Preference number: 2 (lower is better)
Translates to: QPPLGKMGPAFSVFT*SLSHSALCSSGTPE
Trigger: CTCTGGGGTCCCTGAGGAGCACAGGGCTGAATGAGAGAGACTCAAAGTGAATACTGAGAAGGCAGGACCCATCTTACCCAGAGGGGGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp GACCTTCTTTACAGCACCCCTCACCGTCCCAGCTTGACCTTCAACGCCCTCTACAGGCCCACCCCTCTCTaGGGAGAAGACCGAGATATA +
Preference number: 2 (lower is better)
Translates to: DLLYSTPHRPSLTFNALYRPTPL*GEDRDI
Trigger: TATATCTCGGTCTTCTCCTCAGAGAGGGGTGGGCCT...GTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp AATCCGTTGGCAGGTTTCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCGCCCCGACGGGTTGCTaGGGATGCGGCGGAATAAAC +
Preference number: 2 (lower is better)
Translates to: NPLAGFSGFCCFGLHSPSAPTGC*GCGGIN
Trigger: GTTTATTCCGCCGCATCCTCAGCAACCCGTCGGGGC...GCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAACGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp ACCGTCATCTGTGTCACTCGCCGCTACTCGGATGGCTGGTGTGAGGGTGTCAGTCCTAGAGCTGTCTTCTaGGAGCATCATAGGTCTGCC +
Preference number: 2 (lower is better)
Translates to: TVICVTRRYSDGWCEGVSPRAVF*EHHRSA
Trigger: GGCAGACCTATGATGCTCTCAGAAGACAGCTCTAGG...ACTGACACCCTCACACCAGCCATCCGAGTAGCGGCGAGTGACACAGATGACGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp GGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATTGCACCCCATCATCTTGCCCCACAGTGGTaGCCCTGTACCCATACACCC +
Preference number: 2 (lower is better)
Translates to: GEVPVSEVSLGFGIAPHHLAPQW*PCTHTP
Trigger: GGGTGTATGGGTACAGGGTCACCACTGTGGGGCAAG...ATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp CAGATGAGCCCAGCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAAGGGCTCAGCTTTCTGTaGCTCCTGGATGAGGCGGTG +
Preference number: 2 (lower is better)
Translates to: QMSPAGSLLATWRKVPLQGLSFL*LLDEAV
Trigger: CACCGCCTCATCCAGGAGGCACAGAAAGCTGAGCCC...TTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp ACAGTGGTGACCCTGTACCCATACACCCGGCAAAAGGACAATGAGCTCTCCTTCCTGCCTTCCAAGGGGTaGTCACCTCCCTGGAGGGAA +
Preference number: 2 (lower is better)
Translates to: TVVTLYPYTRQKDNELSFLPSKG*SPPWRE
Trigger: TTCCCTCCAGGGAGGTGAGCACCCCTTGGAAGGCAG...GAAGGAGAGCTCATTGTCCTTTTGCCGGGTGTATGGGTACAGGGTCACCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CCA 90 bp GCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTTGACTCGACTGAAACCGCGCTGCAGCACATGTaGGCCAGCACAGCACACACT +
Preference number: 2 (lower is better)
Translates to: ATALFSDPYRQALDSTETALQHM*ASTAHT
Trigger: AGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGC...GGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CCA 90 bp AATCCGTTGGCAGGTTTCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCGGGCGCGGAAGGAGCTaGGCTCAGCTTTCTGTGCCT +
Preference number: 2 (lower is better)
Translates to: NPLAGFSGFCCFGLHSPSGRGRS*AQLSVP
Trigger: AGGCACAGAAAGCTGAGCCCAGCTCCTTCCGCGCCC...GCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAACGGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp ACCGTCATCTGTGTCACTCGCCGCTACTCGGATGGCTGGTGTGAGGGTGTCAGTTTAAATAGGACTCCCTaGGAGCAGAGAGCACCTCTC +
Preference number: 2 (lower is better)
Translates to: TVICVTRRYSDGWCEGVSLNRTP*EQRAPL
Trigger: GAGAGGTGCTCTCTGCTCTCAGGGAGTCCTATTTAA...ACTGACACCCTCACACCAGCCATCCGAGTAGCGGCGAGTGACACAGATGACGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp GGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATTGCACCCCATCATACAGCAGGTGGATTTTaGGAGGTGGCCTCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: GEVPVSEVSLGFGIAPHHTAGGF*EVASRQ
Trigger: CTGCCTGGAGGCCACCTCTCAAAATCCACCTGCTGT...ATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp CGTTCACGGGAGCCAGAGACACAGAAACAAGCCACTGCTCTCTTTTCAGACCCACAGCCAGCTCGACTCTaGAGCCAGCACCAAAAGCTG +
Preference number: 2 (lower is better)
Translates to: RSREPETQKQATALFSDPQPARL*SQHQKL
Trigger: CAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGCTG...TGGGTCTGAAAAGAGAGCAGTGGCTTGTTTCTGTGTCTCTGGCTCCCGTGAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR GCA 90 bp GTTTCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCCGGAAGCATTTGCGGAACACGGAAGCCCTaGAGTCTGCCCCAGAAGGAC +
Preference number: 2 (lower is better)
Translates to: VSLASVALAFTLQAGSICGTRKP*SLPQKD
Trigger: GTCCTTCTGGGGCAGACTGCAGGGCTTCCGTGTTCC...GCAAATGCTTCCGGCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp CGCTGGGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATaGCACCCCATCATTGAGACTCTCCTAAGTGTCTTGGCTTCTGCC +
Preference number: 2 (lower is better)
Translates to: RWGKSQFQRCLLALG*HPIIETLLSVLASA
Trigger: GGCAGAAGCCAAGACACTTAGGAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCCCAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp GACCTTCTTTACAGCACCCCTCACCGTCCCAGCTTGACCTTCAACGCCCTCTACAGGGAAAGTGTGTCCTaGGAGACTTTCCTGACTCCA +
Preference number: 2 (lower is better)
Translates to: DLLYSTPHRPSLTFNALYRESVS*ETFLTP
Trigger: TGGAGTCAGGAAAGTCTCTCAGGACACACTTTCCCT...GTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp ACAAACCTAGAAGGCAAGGAGTTTAAGCACCTTGCCCAGAGGACCCCCAGCTCAGATCCTGAGTCCGTTTaGAAGACTGGGCAGAGGAGG +
Preference number: 2 (lower is better)
Translates to: TNLEGKEFKHLAQRTPSSDPESV*KTGQRR
Trigger: CCTCCTCTGCCCAGTCTTTCAAACGGACTCAGGATC...TGAGCTGGGGGTCCTCTGGGCAAGGTGCTTAAACTCCTTGCCTTCTAGGTTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp TCAATCAACCCTATCGTTCTCCCTTCAGGACTTGAGCACGCAGCTGTCACGGACAGGCCAGACAGGGAGTaGTGGAAAGGGAACACGGAA +
Preference number: 2 (lower is better)
Translates to: SINPIVLPSGLEHAAVTDRPDRE*WKGNTE
Trigger: TTCCGTGTTCCCTTTCCATCACTCCCTGTCTGGCCT...GTCCGTGACAGCTGCGTGCTCAAGTCCTGAAGGGAGAACGATAGGGTTGATTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp CATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCACTCATCCGCTGATATaGAATTATAAAATCCCACAG +
Preference number: 2 (lower is better)
Translates to: HLDQFRAHLAPPTMRPAPTHPLI*NYKIPQ
Trigger: CTGTGGGATTTTATAATTTCATATCAGCGGATGAGT...GGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148945.8
3UTR-3UTR GCA 90 bp TTTAAGCACCTTGCCCAGAGGACCCCCAGCTCATGCTCAGAAGATCGCCAGCTTAATCTGGTACTGGCATaGGGATTGGGGGATCCTGAG +
Preference number: 2 (lower is better)
Translates to: FKHLAQRTPSSCSEDRQLNLVLA*GLGDPE
Trigger: CTCAGGATCCCCCAATCCGCATGCCAGTACCAGATT...AAGCTGGCGATCTTCTGAGCATGAGCTGGGGGTCCTCTGGGCAAGGTGCTTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp CAGATGAGCCCAGCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAAGGAAGCCCTGCAGTCTaGCCCAGAAGGACTCTCAAT +
Preference number: 2 (lower is better)
Translates to: QMSPAGSLLATWRKVPLQGSPAV*PRRTLN
Trigger: ATTGAGAGTCCTTCTGGGGCAGACTGCAGGGCTTCC...TTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CCA 90 bp TGGCACCCAGCTTCACCCTCCGCCAGTCGCCCTTCCTCAACCCTAAACTCTGCTCTCCAGGCAGTCTTGTaGTTGAGAAAACGAAAAACC +
Preference number: 2 (lower is better)
Translates to: WHPASPSASRPSSTLNSALQAVL*LRKRKT
Trigger: GGTTTTTCGTTTTCTCAACCACAAGACTGCCTGGAG...AGCAGAGTTTAGGGTTGAGGAAGGGCGACTGGCGGAGGGTGAAGCTGGGTGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp GCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAACTCTaGGGACTGAAAGGCAGCAGAATCCGTTGGCAGGTTTCTCTGGCT +
Preference number: 2 (lower is better)
Translates to: AGSLLATWRKVPLQL*GLKGSRIRWQVSLA
Trigger: AGCCAGAGAAACCTGCCAACGGATTCTGCTGCCTTTCAGTCCCAAGAGTTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp ATGAGCCCAGCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTaGCAACTCTTGGGACTGAAAGGCAGCAGAATCCGTTGGCAGGTT +
Preference number: 2 (lower is better)
Translates to: MSPAGSLLATWRKVP*QLLGLKGSRIRWQV
Trigger: AACCTGCCAACGGATTCTGCTGCCTTTCAGTCCCAAGAGTTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp TGCTCACGCTGGGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTaGGGATTGCACCCCATCATTGAGACTCTCCTAAGTGTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: CSRWGKSQFQRCLLA*GLHPIIETLLSVLA
Trigger: AGCCAAGACACTTAGGAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCCCAGCGTGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR GCA 90 bp GCATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCGGCTGCAAGAATGCATaGAAATATTACAAATACCAT +
Preference number: 2 (lower is better)
Translates to: ASGPVQSPPGSTHHAASSGCKNA*KYYKYH
Trigger: ATGGTATTTGTAATATTTGCATGCATTCTTGCAGCC...GGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR GCA 90 bp AGATCTTACTATGAGGTCTGGGGACCCCTCTGGGACGCTGGGCTAGAAGGCGTCGGGTTTCCCTGGCTCTaGTTAAAAACATGGCTTTCT +
Preference number: 2 (lower is better)
Translates to: RSYYEVWGPLWDAGLEGVGFPWL*LKTWLS
Trigger: AGAAAGCCATGTTTTTAAGCAGAGCCAGGGAAACCC...GACGCCTTCTAGCCCAGCGTCCCAGAGGGGTCCCCAGACCTCATAGTAAGATCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CCA 90 bp CAGATGAGCCCAGCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAATGGCTTCTGTTGCTTTaGCCTTCACTCTCCAAGCCG +
Preference number: 2 (lower is better)
Translates to: QMSPAGSLLATWRKVPLQWLLLL*PSLSKP
Trigger: CGGCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCA...TTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp ACGCGATGCTATGTGCGCCCCAGCGGCAGCTCGCGCTCCTTTAGTTaGAAGGGTAGGTACTCAGGAAGACTTCATCAGATGAGAAAAAGA +
Preference number: 2 (lower is better)
Translates to: TRCYVRPSGSSRSFS*KGRYSGRLHQMRKR
Trigger: TCTTTTTCTCATCTGATGAAGTCTTCCTGAGTACCTACCCTTCAAACTAAAGGAGCGCGAGCTGCCGCTGGGGCGCACATAGCATCGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 90 bp TATGTACCCAGCCTCCAACTTATCCTTTATCCTGTAATTCCCGTCTaGCCTCTAGTGGGGCAGGGTGACAGAGAACATGACCTCCCCCAC +
Preference number: 2 (lower is better)
Translates to: YVPSLQLILYPVIPV*PLVGQGDREHDLPH
Trigger: GTGGGGGAGGTCATGTTCTCTGTCACCCTGCCCCACTAGAGGCAAGACGGGAATTACAGGATAAAGGATAAGTTGGAGGCTGGGTACATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR TCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGTCCGTCAGGCCAGTCTaGGGGCTCACCAGGACAACG +
Preference number: 2 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMSVRPV*GLTRTT
Trigger: CGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGA...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR-3UTR CCA 90 bp TCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCCGGAAGCATTTGCTTTTGCTCCATACAGCAGTaGGAAGAGGGTGGGCTAGAG +
Preference number: 2 (lower is better)
Translates to: SLASVALAFTLQAGSICFCSIQQ*EEGGLE
Trigger: CTCTAGCCCACCCTCTTCCCACTGCTGTATGGAGCA...AAAGCAAATGCTTCCGGCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CCA 90 bp CAGATGAGCCCAGCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAAGTTGGCAGGTTTCTCTaGCTTCTGTTGCTTTGGCCT +
Preference number: 2 (lower is better)
Translates to: QMSPAGSLLATWRKVPLQVGRFL*LLLLWP
Trigger: AGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAAC...TTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 90 bp ATGAGTGATGACAGGAACTGGTTAGAGCTTGAGGATGCTGCAGGGTaGGCCCACTTTCCTTTACACGAACCCTTTTGTCTTCCTTCCCAG +
Preference number: 2 (lower is better)
Translates to: MSDDRNWLELEDAAG*AHFPLHEPFCLPSQ
Trigger: CTGGGAAGGAAGACAAAAGGGTTCGTGTAAAGGAAAGTGGGCCAACCCTGCAGCATCCTCAAGCTCTAACCAGTTCCTGTCATCACTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CCA 90 bp GCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTTGACTCGACTGAAACCATGGATCTGTCTACATaGAAGGTGGATTTGCAGACT +
Preference number: 2 (lower is better)
Translates to: ATALFSDPYRQALDSTETMDLST*KVDLQT
Trigger: AGTCTGCAAATCCACCTTCCATGTAGACAGATCCAT...GGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CCA 90 bp CATACTACACACAGAGCACACATCAGCTTCCTTTTTCCTCCGTCTTTCATACATGTGGGCTGTATGGGGTaGGGGCTAGCTCAGAAGGAT +
Preference number: 2 (lower is better)
Translates to: HTTHRAHISFLFPPSFIHVGCMG*GLAQKD
Trigger: ATCCTTCTGAGCTAGCCCCCACCCCATACAGCCCAC...ATGTATGAAAGACGGAGGAAAAAGGAAGCTGATGTGTGCTCTGTGTGTAGTATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACCCTCATCCGCTGATATaGAATTATAAAATCCCACAG +
Preference number: 2 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYPHPLI*NYKIPQ
Trigger: CTGTGGGATTTTATAATTTCATATCAGCGGATGAGG...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp CGTTCACGGGAGCCAGAGACACAGAAACAAGCCACTGCTCTCTTTTCAGACCCACCTCATCCGCTGATATaGAATTATAAAATCCCACAG +
Preference number: 2 (lower is better)
Translates to: RSREPETQKQATALFSDPPHPLI*NYKIPQ
Trigger: CTGTGGGATTTTATAATTTCATATCAGCGGATGAGG...TGGGTCTGAAAAGAGAGCAGTGGCTTGTTTCTGTGTCTCTGGCTCCCGTGAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACGCATACCTCATCCGCTaGTATGAAATTATAAAATCC +
Preference number: 2 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYAYLIR*YEIIKS
Trigger: GGATTTTATAATTTCATATCAGCGGATGAGGTATGC...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR-3UTR CCA 90 bp CATACTACACACAGAGCACACATCAGCTTCCTTTTTCCTCCGTCTTTCATACATGCTCTAGTCCAGAAGTaGTGTGGGTGGGGGAATAAG +
Preference number: 2 (lower is better)
Translates to: HTTHRAHISFLFPPSFIHALVQK*CGWGNK
Trigger: CTTATTCCCCCACCCACACCACTTCTGGACTAGAGC...ATGTATGAAAGACGGAGGAAAAAGGAAGCTGATGTGTGCTCTGTGTGTAGTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp CTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTGCTTTAGGAGGGAACTATCAATTGGAACTCAGCCTCTaGGAAGAGCAGCACAGAATG +
Preference number: 2 (lower is better)
Translates to: LFPHRKSSSVFALGGNYQLELSL*EEQHRM
Trigger: CATTCTGTGCTGCTCTTCTCAGAGGCTGAGTTCCAA...TTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR GCA 90 bp AAGAACACTGGACTTCCTTTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGGCCCAATGGACTGAATaGCCAGCAGAGACATCCAAT +
Preference number: 2 (lower is better)
Translates to: KNTGLPLRNEKVQVTSGLAQWTE*PAETSN
Trigger: ATTGGATGTCTCTGCTGGGCATTCAGTCCATTGGGC...CAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAAAGGAAGTCCAGTGTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp AGGAGCCTCAAAGTAAGAGATTCCAATCCATCTTCCCCTAACAGCTGCGCACAACTTCTCTATAATGCTTaGTATTGTGTGAAACGCAGC +
Preference number: 2 (lower is better)
Translates to: RSLKVRDSNPSSPNSCAQLLYNA*YCVKRS
Trigger: GCTGCGTTTCACACAATATCAAGCATTATAGAGAAG...TTGTGCGCAGCTGTTAGGGGAAGATGGATTGGAATCTCTTACTTTGAGGCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR GCA 90 bp ATTGCTTCCCAAGACTGTAGGTTAGCTAGTGAGCTGTTATTGCATAACAATGCCCATGGAAGGTGGATTTaGAGACTTCCCATAAGCTGC +
Preference number: 2 (lower is better)
Translates to: IASQDCRLASELLLHNNAHGRWI*RLPISC
Trigger: GCAGCTTATGGGAAGTCTGCAAATCCACCTTCCATG...GGCATTGTTATGCAATAACAGCTCACTAGCTAACCTACAGTCTTGGGAAGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 90 bp AGAAACAAGCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTaGACTCGACTGAAACCATCCGATTTCCTTTTGACATTAAACAAA +
Preference number: 2 (lower is better)
Translates to: RNKPLLSFQTHTGRL*TRLKPSDFLLTLNK
Trigger: TTTGTTTAATGTCAAAAGGAAATCGGATGGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGCTTGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR-3UTR CCA 90 bp CTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTGCTTTAGGAGGGAACTATCAACCCATCCACATTTCTTaGTCACTACCAGCAATTACG +
Preference number: 2 (lower is better)
Translates to: LFPHRKSSSVFALGGNYQPIHIS*SLPAIT
Trigger: CGTAATTGCTGGTAGTGACCAAGAAATGTGGATGGG...TTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR TCA 90 bp CATACTACACACAGAGCACACATCAGCTTCCTTTTTCCTCCGTCTTTCATACATGAAGACTTCATCAGATaGGAAAAAGATGACCCAGAG +
Preference number: 2 (lower is better)
Translates to: HTTHRAHISFLFPPSFIHEDFIR*EKDDPE
Trigger: CTCTGGGTCATCTTTTTCTCATCTGATGAAGTCTTC...ATGTATGAAAGACGGAGGAAAAAGGAAGCTGATGTGTGCTCTGTGTGTAGTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp GAGAGGCGGCGCGGCGGGAGCCGGCCAGGGAGAAGCTaGTTAGCGGGCCACAGCCAGGGTCGCTGGCACATC +
Preference number: 3 (lower is better)
Translates to: ERRRGGSRPGRS*LAGHSQGRWHI
Trigger: GATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCTTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CACCCCGGATCCCTGAGCCGGTGCAGCTCCCAGCCGTaGCAGACGGCAAGCTCTCCGCTGCCTCCTCTGCCT +
Preference number: 3 (lower is better)
Translates to: HPGSLSRCSSQP*QTASSPLPPLP
Trigger: AGGCAGAGGAGGCAGCGGAGAGCTTGCCGTCTGGCACGGCTGGGAGCTGCACCGGCTCAGGGATCCGGGGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp TCAGCAGTCCCCGCGCGTCGGGCCCCGACGGGTTGCTaGGGATGCGGCGGAATAAACTGTGGTGGCCAGCGG +
Preference number: 3 (lower is better)
Translates to: SAVPARRAPTGC*GCGGINCGGQR
Trigger: CCGCTGGCCACCACAGTTTATTCCGCCGCATCCTCAGCAACCCGTCGGGGCCCGACGCGCGGGGACTGCTGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp CGTTGTCTGCCGAGGTCTTCTTGCCGCCCCCTCCGCTaGAGGTGTCCCAGCCCCCTCTGGGTAAGATGGGTC +
Preference number: 3 (lower is better)
Translates to: RCLPRSSCRPLR*RCPSPLWVRWV
Trigger: GACCCATCTTACCCAGAGGGGGCTGGGACACCTCCAGCGGAGGGGGCGGCAAGAAGACCTCGGCAGACAACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CTGCTGACAGCCCAGGATCTATCCCTGCACCAACCCTaGACTGCCTCGGTGGGCCTCTCGAGCCCCAGGAAG +
Preference number: 3 (lower is better)
Translates to: LLTAQDLSLHQP*TASVGLSSPRK
Trigger: CTTCCTGGGGCTCGAGAGGCCCACCGAGGCAGTGCAGGGTTGGTGCAGGGATAGATCCTGGGCTGTCAGCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp TGTTCTCGTCCACGATGGTCTCATCGAAGTCGAAGGTaGGGAGGAAGCGAGGCGCGCCCGGCGCAGCCATCC +
Preference number: 3 (lower is better)
Translates to: CSRPRWSHRSRR*GGSEARPAQPS
Trigger: GGATGGCTGCGCCGGGCGCGCCTCGCTTCCTCCTCACCTTCGACTTCGATGAGACCATCGTGGACGAGAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CAGTGGGATCCCCCAGTCCAAGGGACAGGTAGCGCCTaGAACCCCGCCTCCTCCACCTGTAGCACCTGTAAC +
Preference number: 3 (lower is better)
Translates to: QWDPPVQGTGSA*NPASSTCSTCN
Trigger: GTTACAGGTGCTACAGGTGGAGGAGGCGGGGTTGCAGGCGCTACCTGTCCCTTGGACTGGGGGATCCCACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CCAACCAGCCCTACCCAGCCACTCGTGGTTCTCAACTaGTTCTTCCACCCCTCACCCTCAGCACCTGGCGCC +
Preference number: 3 (lower is better)
Translates to: PTSPTQPLVVLN*FFHPSPSAPGA
Trigger: GGCGCCAGGTGCTGAGGGTGAGGGGTGGAAGAAGCAGTTGAGAACCACGAGTGGCTGGGTAGGGCTGGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp GACCGGGACCCTGTCTCGCAAGAGCATAAAGGCGCCTaGTACACCTGTTTCCGCCACGCTGGGGTGAGGCCT +
Preference number: 3 (lower is better)
Translates to: DRDPVSQEHKGA*YTCFRHAGVRP
Trigger: AGGCCTCACCCCAGCGTGGCGGAAACAGGTGTAGCAGGCGCCTTTATGCTCTTGCGAGACAGGGTCCCGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp AGGATCTATCCCTGCACCAACCCTGCACTGCCTCGGTaGGCCTCTCGAGCCCCAGGAAGCCAGCTTCCACAG +
Preference number: 3 (lower is better)
Translates to: RIYPCTNPALPR*ASRAPGSQLPQ
Trigger: CTGTGGAAGCTGGCTTCCTGGGGCTCGAGAGGCCCACCGAGGCAGTGCAGGGTTGGTGCAGGGATAGATCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp CAGATGAGCCCAGCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTTGCAACAGGCTCTCGGGCAGTaGCTGGCCTGGCGCGGCACG +
Preference number: 3 (lower is better)
Translates to: QMSPAGSLLATWRKVPLQQALGQ*LAWRGT
Trigger: CGTGCCGCGCCAGGCCAGCAACTGCCCGAGAGCCTG...TTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp GGCTGTGCAGAGGAAGTGGCCTTCAGACGGCGTCTGTaGTGCGGGTTGTTTTCTGTGGGACGGCTTTGGGGG +
Preference number: 3 (lower is better)
Translates to: GCAEEVAFRRRL*CGLFSVGRLWG
Trigger: CCCCCAAAGCCGTCCCACAGAAAACAACCCGCAGCACAGACGCCGTCTGAAGGCCACTTCCTCTGCACAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp GGACTGTGGGGACACCCGGACACCTGCTATCTACCCTaGTCACTGCTTCCCTTCCACTTCTGCCTGGGCTGG +
Preference number: 3 (lower is better)
Translates to: GLWGHPDTCYLP*SLLPFHFCLGW
Trigger: CCAGCCCAGGCAGAAGTGGAAGGGAAGCAGTGACCAGGGTAGATAGCAGGTGTCCGGGTGTCCCCACAGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CCA 72 bp TCCCGTCCCTCCTCCGTCGGTTGTCCCGAGCACCCCTaGCAGGCGATGGTCTTCAACACATCTTCAGCACCT +
Preference number: 3 (lower is better)
Translates to: SRPSSVGCPEHP*QAMVFNTSSAP
Trigger: AGGTGCTGAAGATGTGTTGAAGACCATCGCCTGCCAGGGGTGCTCGGGACAACCGACGGAGGAGGGACGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CTGAAGAGGGCCAGGAGCCCAAAGACAAGGAACCTGTaGAGAGAGAGGGCCAGGCCTGCTCTGGGAGACCTT +
Preference number: 3 (lower is better)
Translates to: LKRARSPKTRNL*RERARPALGDL
Trigger: AAGGTCTCCCAGAGCAGGCCTGGCCCTCTCTCTGCACAGGTTCCTTGTCTTTGGGCTCCTGGCCCTCTTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp CCAATGCAGCCAGAGTCACAGAGCCTACTCGGGGTGTaGTGGAGACCCTGTTTCTGGCTCCCTGGCTCCCTA +
Preference number: 3 (lower is better)
Translates to: PMQPESQSLLGV*WRPCFWLPGSL
Trigger: TAGGGAGCCAGGGAGCCAGAAACAGGGTCTCCATCACACCCCGAGTAGGCTCTGTGACTCTGGCTGCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp CCCACCACTCACCCCCACCCACAACTGAAGGCCCAATaGCCTTCTTTACAGCACCCCTCACCGTCCCAGCTT +
Preference number: 3 (lower is better)
Translates to: PTTHPHPQLKAQ*PSLQHPSPSQL
Trigger: AAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTCATTGGGCCTTCAGTTGTGGGTGGGGGTGAGTGGTGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 72 bp GGCGCTGCAGCACATGTGGGCCAGCACAGCACACACTaGAGCTCTTCCCCAAGTACACTGTCAACCCTGAGT +
Preference number: 3 (lower is better)
Translates to: GAAAHVGQHSTH*SSSPSTLSTLS
Trigger: ACTCAGGGTTGACAGTGTACTTGGGGAAGAGCTGCAGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 72 bp TGGCTTCCACAGAGAGTGCAGTGGGGACCTCTGGGCTaGTTTAGCGAGGTAGTTCCGGGTTGGAAGGTCAGC +
Preference number: 3 (lower is better)
Translates to: WLPQRVQWGPLG*FSEVVPGWKVS
Trigger: GCTGACCTTCCAACCCGGAACTACCTCGCTAAAGCAGCCCAGAGGTCCCCACTGCACTCTCTGTGGAAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 72 bp GTGGGGTTGCAAAGGGCAACTCAGTCACTGTGGCTGTaGAGAGGAAGTGGCCTTCAGACGGCGTCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: VGLQRATQSLWL*RGSGLQTASVL
Trigger: CAGCACAGACGCCGTCTGAAGGCCACTTCCTCTGCACAGCCACAGTGACTGAGTTGCCCTTTGCAACCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp AGGTACTGTAGAACTCCTGGGGCGCTGCAGCACATGTaGGCCAGCACAGCACACACTGCAGCTCTTCCCCAA +
Preference number: 3 (lower is better)
Translates to: RYCRTPGALQHM*ASTAHTAALPQ
Trigger: TTGGGGAAGAGCTGCAGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGCCCCAGGAGTTCTACAGTACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp CCTCCGTCGGTTGTCCCGAGCACCCCTGGCAGGCGATaGTCTTCAACACATCTTCAGCACCTGTTGCAGATG +
Preference number: 3 (lower is better)
Translates to: PPSVVPSTPGRR*SSTHLQHLLQM
Trigger: CATCTGCAACAGGTGCTGAAGATGTGTTGAAGACCATCGCCTGCCAGGGGTGCTCGGGACAACCGACGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp TCAAGGCCATGCCAACCAGCCCTACCCAGCCACTCGTaGTTCTCAACTGCTTCTTCCACCCCTCACCCTCAG +
Preference number: 3 (lower is better)
Translates to: SRPCQPALPSHS*FSTASSTPHPQ
Trigger: CTGAGGGTGAGGGGTGGAAGAAGCAGTTGAGAACCACGAGTGGCTGGGTAGGGCTGGTTGGCATGGCCTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp AGATCTTACTATGAGGTCTGGGGACCCCTCTGGGACGCTGGGCTAGAAGGCGTCGAGGATGCTGCAGGGTaGGCCCACTTTCCTTTACAC +
Preference number: 3 (lower is better)
Translates to: RSYYEVWGPLWDAGLEGVEDAAG*AHFPLH
Trigger: GTGTAAAGGAAAGTGGGCCAACCCTGCAGCATCCTC...GACGCCTTCTAGCCCAGCGTCCCAGAGGGGTCCCCAGACCTCATAGTAAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp CATCTGTGTCACTCGCCGCTACTCGGATGGCTGGTGTaGGGGTGTCAGTTCAGAGGGCACTGGATTCTTCCC +
Preference number: 3 (lower is better)
Translates to: HLCHSPLLGWLV*GCQFRGHWILP
Trigger: GGGAAGAATCCAGTGCCCTCTGAACTGACACCCTCACACCAGCCATCCGAGTAGCGGCGAGTGACACAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp GGGGACACCCGGACACCTGCTATCTACCCTGGTCACTaGTTCCCTTCCACTTCTGCCTGGGCTGGAATTACA +
Preference number: 3 (lower is better)
Translates to: GDTRTPAIYPGH*FPSTSAWAGIT
Trigger: TGTAATTCCAGCCCAGGCAGAAGTGGAAGGGAAGCAGTGACCAGGGTAGATAGCAGGTGTCCGGGTGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 72 bp CAAGTGACCTCAGGACTGTGGGGACACCCGGACACCTaGTATCTACCCTGGTCACTGCTTCCCTTCCACTTC +
Preference number: 3 (lower is better)
Translates to: QVTSGLWGHPDT*YLPWSLLPFHF
Trigger: GAAGTGGAAGGGAAGCAGTGACCAGGGTAGATAGCAGGTGTCCGGGTGTCCCCACAGTCCTGAGGTCACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CCA 72 bp CTGTTTGGCTATGAACTGCAACAAATCGCCCATGCCTaGCGACAGGGGGATGGTCTCGTAGACAGCGCGCAG +
Preference number: 3 (lower is better)
Translates to: LFGYELQQIAHA*RQGDGLVDSAQ
Trigger: CTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCAGGCATGGGCGATTTGTTGCAGTTCATAGCCAAACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp ACCGTCATCTGTGTCACTCGCCGCTACTCGGATGGCTaGTGTGAGGGTGTCAGTTCAGAGGGCACTGGATTC +
Preference number: 3 (lower is better)
Translates to: TVICVTRRYSDG*CEGVSSEGTGF
Trigger: GAATCCAGTGCCCTCTGAACTGACACCCTCACACCAGCCATCCGAGTAGCGGCGAGTGACACAGATGACGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp CCGCCCCCACCAGGTTTTGGACCAGATGAGCCCAGCTaGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTT +
Preference number: 3 (lower is better)
Translates to: PPPPGFGPDEPS*VPASYLEKGTF
Trigger: AAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTGGTCCAAAACCTGGTGGGGGCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp GCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTTGACTCGACTGAAACCTTAGACGGGGTGAGGTaGTGGGGTGGGCTGTATGGG +
Preference number: 3 (lower is better)
Translates to: ATALFSDPYRQALDSTETLDGVR*WGGLYG
Trigger: CCCATACAGCCCACCCCACAACCTCACCCCGTCTAA...GGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp GATGTCAATCAACCCTATCGTTCTCCCTTCAGGACTTaGGCACGCAGCTGTCACGGACCGGGACCCTGTCTC +
Preference number: 3 (lower is better)
Translates to: DVNQPYRSPFRT*ARSCHGPGPCL
Trigger: GAGACAGGGTCCCGGTCCGTGACAGCTGCGTGCTCAAGTCCTGAAGGGAGAACGATAGGGTTGATTGACATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CTGGCTCCCTACATGGTAAGGCAGATGGAGAGGCTGTaGTCGTTCACGGGAGCCAGAGACACAGAAACAAGC +
Preference number: 3 (lower is better)
Translates to: LAPYMVRQMERL*SFTGARDTETS
Trigger: GCTTGTTTCTGTGTCTCTGGCTCCCGTGAACGAGCACAGCCTCTCCATCTGCCTTACCATGTAGGGAGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 72 bp GCAGGCGATGGTCTTCAACACATCTTCAGCACCTGTTaGAGATGTTGGCGCACATCGGCGGCTGTTTCCCAG +
Preference number: 3 (lower is better)
Translates to: AGDGLQHIFSTC*RCWRTSAAVSQ
Trigger: CTGGGAAACAGCCGCCGATGTGCGCCAACATCTGCAACAGGTGCTGAAGATGTGTTGAAGACCATCGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CAGACAGGGAGTGATGGAAAGGGAACACGGAAGCCCTaGAGTCTGCCCCAGAAGGACTCTCAATCTCAACCC +
Preference number: 3 (lower is better)
Translates to: QTGSDGKGTRKP*SLPQKDSQSQP
Trigger: GGGTTGAGATTGAGAGTCCTTCTGGGGCAGACTGCAGGGCTTCCGTGTTCCCTTTCCATCACTCCCTGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp CACTGGCGACTTTTATGGCTTCCACAGAGAGTGCAGTaGGGACCTCTGGGCTGCTTTAGCGAGGTAGTTCCG +
Preference number: 3 (lower is better)
Translates to: HWRLLWLPQRVQ*GPLGCFSEVVP
Trigger: CGGAACTACCTCGCTAAAGCAGCCCAGAGGTCCCCACTGCACTCTCTGTGGAAGCCATAAAAGTCGCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp GTTCAGAGGGCACTGGATTCTTCCCAGGGAACTATGTaGAGCCCAGCTGCTGACAGCCCAGGATCTATCCCT +
Preference number: 3 (lower is better)
Translates to: VQRALDSSQGTM*SPAADSPGSIP
Trigger: AGGGATAGATCCTGGGCTGTCAGCAGCTGGGCTCCACATAGTTCCCTGGGAAGAATCCAGTGCCCTCTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp CCAGGAGCCCAAAGACAAGGAACCTGTGCAGAGAGAGGGCCAGGCCTGCTCTGGCTTCTTCTAACACTCTaGGAAAACACAGGAGCCTCA +
Preference number: 3 (lower is better)
Translates to: PGAQRQGTCAERGPGLLWLLLTL*ENTGAS
Trigger: TGAGGCTCCTGTGTTTTCCAAGAGTGTTAGAAGAAG...CCAGAGCAGGCCTGGCCCTCTCTCTGCACAGGTTCCTTGTCTTTGGGCTCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp TCCTTCTCGAAGGGTATGGGTCTTCCCAGTGACAGGTaGCTATGGCTCTTCGCTATCCAAACGCCCGGGACA +
Preference number: 3 (lower is better)
Translates to: SFSKGMGLPSDR*LWLFAIQTPGT
Trigger: TGTCCCGGGCGTTTGGATAGCGAAGAGCCATAGTCACCTGTCACTGGGAAGACCCATACCCTTCGAGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp GCAGCCATCCTTCTCGAAGGGTATGGGTCTTCCCAGTaGCAGGTGACTATGGCTCTTCGCTATCCAAACGCC +
Preference number: 3 (lower is better)
Translates to: AAILLEGYGSSQ*QVTMALRYPNA
Trigger: GGCGTTTGGATAGCGAAGAGCCATAGTCACCTGTCACTGGGAAGACCCATACCCTTCGAGAAGGATGGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp CTGGGAGACCTTCCTACCCACCTGGAGCAGAAAAAGTaGGAGAGCGTGTGCTTACACATGAGAGGTCCCCAC +
Preference number: 3 (lower is better)
Translates to: LGDLPTHLEQKK*ESVCLHMRGPH
Trigger: GTGGGGACCTCTCATGTGTAAGCACACGCTCTCTCACTTTTTCTGCTCCAGGTGGGTAGGAAGGTCTCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp CTGAACCCTGCTGGGAAAGAGCAGCTGGCCTGCTATTaGGTAGTACCTGACTGTTCCAAAGCCCCTCTACGC +
Preference number: 3 (lower is better)
Translates to: LNPAGKEQLACY*VVPDCSKAPLR
Trigger: GCGTAGAGGGGCTTTGGAACAGTCAGGTACTACTCAATAGCAGGCCAGCTGCTCTTTCCCAGCAGGGTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp AAGAATGTAACAGGTACTGTAGAACTCCTGGGGCGCTaGAGCACATGTGGGCCAGCACAGCACACACTGCAG +
Preference number: 3 (lower is better)
Translates to: KNVTGTVELLGR*STCGPAQHTLQ
Trigger: CTGCAGTGTGTGCTGTGCTGGCCCACATGTGCTGCAGCGCCCCAGGAGTTCTACAGTACCTGTTACATTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp AGATGTGATAGGGCAGACTGGGCTGCAATGGGAGGGTaGAAACAGGGAGGAGGGTCACCTTTAGTTCTGCGT +
Preference number: 3 (lower is better)
Translates to: RCDRADWAAMGG*KQGGGSPLVLR
Trigger: ACGCAGAACTAAAGGTGACCCTCCTCCCTGTTTCCACCCTCCCATTGCAGCCCAGTCTGCCCTATCACATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CCA 72 bp CACGCTGGGGGAAGTCCCAGTTTCAGAGGTGTCTCTTaGCTTTGGGATTGCACCCCATCATTGAGACTCTCC +
Preference number: 3 (lower is better)
Translates to: HAGGSPSFRGVS*LWDCTPSLRLS
Trigger: GGAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCCCAGCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp GCATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCAGAAGCACCTTTGAGTaGTATGGATGTAAGAATAGT +
Preference number: 3 (lower is better)
Translates to: ASGPVQSPPGSTHHAASSRSTFE*YGCKNS
Trigger: ACTATTCTTACATCCATACAACTCAAAGGTGCTTCT...GGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp GGTTCTCAGACTGGACAACTCTGGAAAGGCCCGTGGTaGGGCCTAAGGCTGAGGGTTACTAAGACAGTACCT +
Preference number: 3 (lower is better)
Translates to: GSQTGQLWKGPW*GLRLRVTKTVP
Trigger: AGGTACTGTCTTAGTAACCCTCAGCCTTAGGCCTCACCACGGGCCTTTCCAGAGTTGTCCAGTCTGAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp CAATCTCAACCCTCTTTACTCTTCCCATTAGGCCCCTaGCGTCACAAGCAGCCATTCGCTGGGCTCTTCACG +
Preference number: 3 (lower is better)
Translates to: QSQPSLLFPLGP*RHKQPFAGLFT
Trigger: CGTGAAGAGCCCAGCGAATGGCTGCTTGTGACGTCAGGGGCCTAATGGGAAGAGTAAAGAGGGTTGAGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp TTTCTGCACCACAGACTCTACCTCTTCCAGTGTGCATaGCGCTCTCAATCCAAACAGCCAGTGGGGCATTCC +
Preference number: 3 (lower is better)
Translates to: FLHHRLYLFQCA*RSQSKQPVGHS
Trigger: GGAATGCCCCACTGGCTGTTTGGATTGAGAGCGGCATGCACACTGGAAGAGGTAGAGTCTGTGGTGCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 72 bp AGGAGAAAATCAGCAGGAGGCCCTTCCACAGGAAAATaGTTCCTGACCCTGCAAGGTAAACAGCCTCAGGCC +
Preference number: 3 (lower is better)
Translates to: RRKSAGGPSTGK*FLTLQGKQPQA
Trigger: GGCCTGAGGCTGTTTACCTTGCAGGGTCAGGAAGCATTTTCCTGTGGAAGGGCCTCCTGCTGATTTTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR GCA 72 bp GGAGTGATGGAAAGGGAACACGGAAGCCCTGCAGTCTaGCCCAGAAGGACTCTCAATCTCAACCCTCTTTAC +
Preference number: 3 (lower is better)
Translates to: GVMEREHGSPAV*PRRTLNLNPLY
Trigger: GTAAAGAGGGTTGAGATTGAGAGTCCTTCTGGGGCAGACTGCAGGGCTTCCGTGTTCCCTTTCCATCACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp GTTGCTTTGGCCTTCACTCTCCAAGCCGGAAGCATTTaGTTTCCCTACCAAGGTGCGGGCGACCCTATCTTT +
Preference number: 3 (lower is better)
Translates to: VALAFTLQAGSI*FPYQGAGDPIF
Trigger: AAAGATAGGGTCGCCCGCACCTTGGTAGGGAAAGCAAATGCTTCCGGCTTGGAGAGTGAAGGCCAAAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp GGACCTCTGGGCTGCTTTAGCGAGGTAGTTCCGGGTTaGAAGGTCAGCATTGCTTCCCAAGACTGTAGGTTA +
Preference number: 3 (lower is better)
Translates to: GPLGCFSEVVPG*KVSIASQDCRL
Trigger: TAACCTACAGTCTTGGGAAGCAATGCTGACCTTCCAACCCGGAACTACCTCGCTAAAGCAGCCCAGAGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CAA 90 bp AAGGAGTTTAAGCACCTTGCCCAGAGGACCCCCAGCTCATGCTCAGAAGATCGCAGAGAACAAGTCCCTTaGTCCCCCTTCACCTCCTTT +
Preference number: 3 (lower is better)
Translates to: KEFKHLAQRTPSSCSEDRREQVP*SPFTSF
Trigger: AAAGGAGGTGAAGGGGGACAAAGGGACTTGTTCTCT...GCGATCTTCTGAGCATGAGCTGGGGGTCCTCTGGGCAAGGTGCTTAAACTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp GTTTCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCCGGAAGCATTTGCCACAAGGTTCTCTTCTaGCCCCACAGTGGTGACCCT +
Preference number: 3 (lower is better)
Translates to: VSLASVALAFTLQAGSICHKVLF*PHSGDP
Trigger: AGGGTCACCACTGTGGGGCAAGAAGAGAACCTTGTG...GCAAATGCTTCCGGCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp ATGACCTTCTTTACAGCACCCCTCACCGTCCCAGCTTaGCCTTCAACGCCCTCTACAGAGGTAAGGATTCCA +
Preference number: 3 (lower is better)
Translates to: MTFFTAPLTVPA*PSTPSTEVRIP
Trigger: TGGAATCCTTACCTCTGTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp GTTAACACAGGGAAGCATATCATCACGCCGGGGGTCTaGCAGGATGCTAGGGAAAAGATGGCTAAGGGAAGC +
Preference number: 3 (lower is better)
Translates to: VNTGKHIITPGV*QDAREKMAKGS
Trigger: GCTTCCCTTAGCCATCTTTTCCCTAGCATCCTGTCAGACCCCCGGCGTGATGATATGCTTCCCTGTGTTAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp AAAGCTGGACTAAGGACCTGTCTACCTCTTGGGCTGTaGACTGTGTTCAGTCCCTGCTCCATACAGCAGTGG +
Preference number: 3 (lower is better)
Translates to: KAGLRTCLPLGL*TVFSPCSIQQW
Trigger: CCACTGCTGTATGGAGCAGGGACTGAACACAGTTCACAGCCCAAGAGGTAGACAGGTCCTTAGTCCAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp TGGGAAAGAGCAGCTGGCCTGCTATTGAGTAGTACCTaGCTGTTCCAAAGCCCCTCTACGCACGACCTAGTA +
Preference number: 3 (lower is better)
Translates to: WERAAGLLLSST*LFQSPSTHDLV
Trigger: TACTAGGTCGTGCGTAGAGGGGCTTTGGAACAGTCAGGTACTACTCAATAGCAGGCCAGCTGCTCTTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp GAGGTGTCTCTTGGCTTTGGGATTGCACCCCATCATTaGGACTCTCCTAAGTGTCTTGGCTTCTGCCATCCC +
Preference number: 3 (lower is better)
Translates to: EVSLGFGIAPHH*DSPKCLGFCHP
Trigger: GGGATGGCAGAAGCCAAGACACTTAGGAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp AGTAGGAGATCAGACGGCCAGGTACTCAGGTCTCTGTaGTACAGTAACAGAAACAACTCCAGGGACGCTGTC +
Preference number: 3 (lower is better)
Translates to: SRRSDGQVLRSL*YSNRNNSRDAV
Trigger: GACAGCGTCCCTGGAGTTGTTTCTGTTACTGTAGCACAGAGACCTGAGTACCTGGCCGTCTGATCTCCTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp GACCAGATGAGCCCAGCTGGGTCCCTGCTAGCTACTTaGAGAAAGGTACCTTTGCAACTCTTGGGACTGAAA +
Preference number: 3 (lower is better)
Translates to: DQMSPAGSLLAT*RKVPLQLLGLK
Trigger: TTTCAGTCCCAAGAGTTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGCTGGGCTCATCTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp AGTCTGGCTAGAGGCATTATGAGTGATGACAGGAACTaGTTAGAGCTTGAGGATGCTGCAGGGTTGGCCCAC +
Preference number: 3 (lower is better)
Translates to: SLARGIMSDDRN*LELEDAAGLAH
Trigger: GTGGGCCAACCCTGCAGCATCCTCAAGCTCTAACCAGTTCCTGTCATCACTCATAATGCCTCTAGCCAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp TGGAGCAGAAAAAGTGAGAGAGCGTGTGCTTACACATaGGAGGTCCCCACTGCTGTCACAGATGTGATAGGG +
Preference number: 3 (lower is better)
Translates to: WSRKSERACAYT*EVPTAVTDVIG
Trigger: CCCTATCACATCTGTGACAGCAGTGGGGACCTCTCATGTGTAAGCACACGCTCTCTCACTTTTTCTGCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR TCA 72 bp CTAAGGACCACCAAGCCACCCAGATCCCTGAGAATTTaGGATAGTGTGGGGTTGCAAAGGGCAACTCAGTCA +
Preference number: 3 (lower is better)
Translates to: LRTTKPPRSLRI*DSVGLQRATQS
Trigger: TGACTGAGTTGCCCTTTGCAACCCCACACTATCTCAAATTCTCAGGGATCTGGGTGGCTTGGTGGTCCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp CTACATGGAAGGTGGATTTGCAGACTTCCCATAAGCTaGAGAGGAGACTGTGGAGGTAAATGGGGTAGGGGT +
Preference number: 3 (lower is better)
Translates to: LHGRWICRLPIS*RGDCGGKWGRG
Trigger: ACCCCTACCCCATTTACCTCCACAGTCTCCTCTGCAGCTTATGGGAAGTCTGCAAATCCACCTTCCATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 72 bp ATTTATCAACAGCCGCCTTTCAAGTCTCCCACGGTGTaGGACCATCAATCAGTCTTGGGTGCCTGGGTACTA +
Preference number: 3 (lower is better)
Translates to: IYQQPPFKSPTV*DHQSVLGAWVL
Trigger: TAGTACCCAGGCACCCAAGACTGATTGATGGTCGCACACCGTGGGAGACTTGAAAGGCGGCTGTTGATAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp TTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGTaGGGACACCCGGACACCTGCTATCTACCCTGGTCA +
Preference number: 3 (lower is better)
Translates to: LRNEKVQVTSGL*GHPDTCYLPWS
Trigger: TGACCAGGGTAGATAGCAGGTGTCCGGGTGTCCCCACAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CCA 72 bp CACAGTCAAAGCTGGACTAAGGACCTGTCTACCTCTTaGGCTGTGAACTGTGTTCAGTCCCTGCTCCATACA +
Preference number: 3 (lower is better)
Translates to: HSQSWTKDLSTS*AVNCVQSLLHT
Trigger: TGTATGGAGCAGGGACTGAACACAGTTCACAGCCCAAGAGGTAGACAGGTCCTTAGTCCAGCTTTGACTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CCA 72 bp TCCTTCCTTTTGGATGAGCTGAGTTCTGAACCCTGCTaGGAAAGAGCAGCTGGCCTGCTATTGAGTAGTACC +
Preference number: 3 (lower is better)
Translates to: SFLLDELSSEPC*ERAAGLLLSST
Trigger: GGTACTACTCAATAGCAGGCCAGCTGCTCTTTCCCAGCAGGGTTCAGAACTCAGCTCATCCAAAAGGAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp TCAATCAACCCTATCGTTCTCCCTTCAGGACTTGAGCACGCAGCTGTCACGGACAGAAGATCGCCAGCTTaGAATAAAACTGCTGACCTC +
Preference number: 3 (lower is better)
Translates to: SINPIVLPSGLEHAAVTDRRSPA*NKTADL
Trigger: GAGGTCAGCAGTTTTATTCAAAGCTGGCGATCTTCT...GTCCGTGACAGCTGCGTGCTCAAGTCCTGAAGGGAGAACGATAGGGTTGATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp GGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATTGCACCCCATCATTTTACACGAACCCTTTaGTCTTCCTTCCCAGAAGCA +
Preference number: 3 (lower is better)
Translates to: GEVPVSEVSLGFGIAPHHFTRTL*SSFPEA
Trigger: TGCTTCTGGGAAGGAAGACAAAAGGGTTCGTGTAAA...ATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR-3UTR CAA 90 bp GGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATTGCACCCCATCATCAGGCAGTCTTGTGGTaGAGAAAACGAAAAACCACT +
Preference number: 3 (lower is better)
Translates to: GEVPVSEVSLGFGIAPHHQAVLW*RKRKTT
Trigger: AGTGGTTTTTCGTTTTCTCAACCACAAGACTGCCTG...ATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR TCA 72 bp CTACTTGGAGAAAGGTACCTTTGCAACTCTTGGGACTaGAAGGCAGCAGAATCCGTTGGCAGGTTTCTCTGG +
Preference number: 3 (lower is better)
Translates to: LLGERYLCNSWD*KAAESVGRFLW
Trigger: CCAGAGAAACCTGCCAACGGATTCTGCTGCCTTTCAGTCCCAAGAGTTGCAAAGGTACCTTTCTCCAAGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR GCA 72 bp GTCACGACATTCAGAAAAGGAACCTGCTTCCTTGTTTaGCTCGGGTTTGTGAGGGCTGCAAGAATGCATGCA +
Preference number: 3 (lower is better)
Translates to: VTTFRKGTCFLV*LGFVRAARMHA
Trigger: TGCATGCATTCTTGCAGCCCTCACAAACCCGAGGCAAACAAGGAAGCAGGTTCCTTTTCTGAATGTCGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp CCCGACACATCAACCAGAAGCCCTGAGTTAACAGGGTaGAGAGAGACCCACTTTATAACAACACAGCCTCTA +
Preference number: 3 (lower is better)
Translates to: PDTSTRSPELTG*RETHFITTQPL
Trigger: TAGAGGCTGTGTTGTTATAAAGTGGGTCTCTCTCCACCCTGTTAACTCAGGGCTTCTGGTTGATGTGTCGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp ACAAAAGTATTCAGCTGTGAAGGTGAACGGACACACTaGCGACTTTTATGGCTTCCACAGAGAGTGCAGTGG +
Preference number: 3 (lower is better)
Translates to: TKVFSCEGERTH*RLLWLPQRVQW
Trigger: CCACTGCACTCTCTGTGGAAGCCATAAAAGTCGCCAGTGTGTCCGTTCACCTTCACAGCTGAATACTTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp TTTAGCCGTGAGATATGGATCTGTCTACATGGAAGGTaGATTTGCAGACTTCCCATAAGCTGCAGAGGAGAC +
Preference number: 3 (lower is better)
Translates to: FSREIWICLHGR*ICRLPISCRGD
Trigger: GTCTCCTCTGCAGCTTATGGGAAGTCTGCAAATCCACCTTCCATGTAGACAGATCCATATCTCACGGCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp GAAGGACAAATGGCTCTAGTCCAGAAGTGGTGTGGGTaGGGGAATAAGATACAAAGAAGCTACAAAGGTGAC +
Preference number: 3 (lower is better)
Translates to: EGQMALVQKWCG*GNKIQRSYKGD
Trigger: GTCACCTTTGTAGCTTCTTTGTATCTTATTCCCCCACCCACACCACTTCTGGACTAGAGCCATTTGTCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp CTAGAAGGTGAAGGACAAATGGCTCTAGTCCAGAAGTaGTGTGGGTGGGGGAATAAGATACAAAGAAGCTAC +
Preference number: 3 (lower is better)
Translates to: LEGEGQMALVQK*CGWGNKIQRSY
Trigger: GTAGCTTCTTTGTATCTTATTCCCCCACCCACACCACTTCTGGACTAGAGCCATTTGTCCTTCACCTTCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CAA 90 bp CATACTACACACAGAGCACACATCAGCTTCCTTTTTCCTCCGTCTTTCATACATACATGGAAGGTGGATTaGCAGACTTCCCATAAGCTG +
Preference number: 3 (lower is better)
Translates to: HTTHRAHISFLFPPSFIHTWKVD*QTSHKL
Trigger: CAGCTTATGGGAAGTCTGCAAATCCACCTTCCATGT...ATGTATGAAAGACGGAGGAAAAAGGAAGCTGATGTGTGCTCTGTGTGTAGTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp AAATTCATAGCTAGAAGCTGGAGGGAAAGTGTGTCCTaGGAGACTTTCCTGACTCCACACACAATGTTTCCT +
Preference number: 3 (lower is better)
Translates to: KFIARSWRESVS*ETFLTPHTMFP
Trigger: AGGAAACATTGTGTGTGGAGTCAGGAAAGTCTCTCAGGACACACTTTCCCTCCAGCTTCTAGCTATGAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp GAAAAGGAACCTGCTTCCTTGTTTGCCTCGGGTTTGTaGGGGCTGCAAGAATGCATGCAAATATTACAAATA +
Preference number: 3 (lower is better)
Translates to: EKEPASLFASGL*GLQECMQILQI
Trigger: TATTTGTAATATTTGCATGCATTCTTGCAGCCCTCACAAACCCGAGGCAAACAAGGAAGCAGGTTCCTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp AGCTGGAGAGCTACAAAGTTGCTCTTTGAAGCAACTTaGGGAAAATTCTCAGAGGAATCTGACTTTCCTTGG +
Preference number: 3 (lower is better)
Translates to: SWRATKLLFEAT*GKFSEESDFPW
Trigger: CCAAGGAAAGTCAGATTCCTCTGAGAATTTTCCTCAAGTTGCTTCAAAGAGCAACTTTGTAGCTCTCCAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp ATAAGATACAAAGAAGCTACAAAGGTGACCCTGCCGTaGATGACAGGGCAACAATACACAACTGTGTTCACA +
Preference number: 3 (lower is better)
Translates to: IRYKEATKVTLP*MTGQQYTTVFT
Trigger: TGTGAACACAGTTGTGTATTGTTGCCCTGTCATTCACGGCAGGGTCACCTTTGTAGCTTCTTTGTATCTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR GCA 72 bp AATCCTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTaGTTTAGGAGGGAACTATCAACCCATTACACAGCA +
Preference number: 3 (lower is better)
Translates to: NPVSSPKELICF*FRRELSTHYTA
Trigger: TGCTGTGTAATGGGTTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAGGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CCA 72 bp GAACTATCAACCCATTACACAGCACAAACTTTAATTTaGGACACGAGAGACCAGCCAGTTGCTAAAGTAATC +
Preference number: 3 (lower is better)
Translates to: ELSTHYTAQTLI*DTRDQPVAKVI
Trigger: GATTACTTTAGCAACTGGCTGGTCTCTCGTGTCCCAAATTAAAGTTTGTGCTGTGTAATGGGTTGATAGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CAA 90 bp CTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTGCTTTAGGAGGGAACTATCAAGCCACAACAAAGCCTTaGAAGATAGAATGGTGTAAA +
Preference number: 3 (lower is better)
Translates to: LFPHRKSSSVFALGGNYQATTKP*KIEWCK
Trigger: TTTACACCATTCTATCTTCAAAGGCTTTGTTGTGGC...TTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR-3UTR CAA 90 bp CCAGTCAGTGTGGACATCCACGTTTTAGAGACTGCAGGCATCTTAAAACTTAAAGAGACATCCAATTCATaGACTAACTTTGTACTGAAC +
Preference number: 3 (lower is better)
Translates to: PVSVDIHVLETAGILKLKETSNS*TNFVLN
Trigger: GTTCAGTACAAAGTTAGTCAATGAATTGGATGTCTC...TTTAAGTTTTAAGATGCCTGCAGTCTCTAAAACGTGGATGTCCACACTGACTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR TCA 72 bp ACACCATTTATTTCTTTCCAACTTAACTCAAGTGAGTaGTCATGTGTATTTTCCAATGCAGCCAGAGTCACA +
Preference number: 3 (lower is better)
Translates to: TPFISFQLNSSE*SCVFSNAARVT
Trigger: TGTGACTCTGGCTGCATTGGAAAATACACATGATCACTCACTTGAGTTAAGTTGGAAAGAAATAAATGGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp CAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCTGGGCCAAGCCCTCTACGGCCTCGAGTTGTaGGGGGTGCAGGGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: QSPPGSTHHAASSLGQALYGLEL*GVQGKW
Trigger: CCACTTCCCCTGCACCCCGCACAACTCGAGGCCGTA...GAGGGCTTGGCCCAGGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp CAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCTGGGCCAAGCCCTCGTGTATGTGCAGGTGTaGGAAAGGGTGCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: QSPPGSTHHAASSLGQALVYVQV*ERVRDG
Trigger: CCCGTCCCGCACCCTTTCTCACACCTGCACATACAC...GAGGGCTTGGCCCAGGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp CATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCGGGAGCAGCTGGAGCTaGGGCCAGTGGGATCTGGAC +
Preference number: 4 (lower is better)
Translates to: HLDQFRAHLAPPTMRPAPGSSWS*GQWDLD
Trigger: GTCCAGATCCCACTGGCCTCAGCTCCAGCTGCTCCC...GGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp GGGCTCACCAGGACAACGGTGAAGGCCCTGAAGGAGGCCGTGGAGTCAGGCAGAGGGAGCAGCTGGAGCTaGGGCCAGTGGGATCTGGAC +
Preference number: 4 (lower is better)
Translates to: GLTRTTVKALKEAVESGRGSSWS*GQWDLD
Trigger: GTCCAGATCCCACTGGCCTCAGCTCCAGCTGCTCCC...TCTGCCTGACTCCACGGCCTCCTTCAGGGCCTTCACCGTTGTCCTGGTGAGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp CATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCTGGGATCTGGACAGCTaGCGGCACATTCACTGGGCT +
Preference number: 4 (lower is better)
Translates to: HLDQFRAHLAPPTMRPAPWDLDS*RHIHWA
Trigger: AGCCCAGTGAATGTGCCGCCAGCTGTCCAGATCCCA...GGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GCATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCTGGGATCTGGACAGCTaGCGGCACATTCACTGGGCT +
Preference number: 4 (lower is better)
Translates to: ASGPVQSPPGSTHHAASSWDLDS*RHIHWA
Trigger: AGCCCAGTGAATGTGCCGCCAGCTGTCCAGATCCCA...GGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGCAGGGGCTGGGCTGGTaGGAGTGTTGGCCACGGCCG +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPQGLGW*ECWPRP
Trigger: CGGCCGTGGCCAACACTCCCACCAGCCCAGCCCCTG...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp TCTTCACTCCGTCAGGCCAGTCTGAGGGCTCACCAGGACAACGGTGAAGGCCCTGAAAAGCGGAACCGCTaGCCGCACACATCGCAGGGG +
Preference number: 4 (lower is better)
Translates to: SSLRQASLRAHQDNGEGPEKRNR*PHTSQG
Trigger: CCCCTGCGATGTGTGCGGTCAGCGGTTCCGCTTTTC...AGGGCCTTCACCGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGAGTGAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp GACCTTCTTTACAGCACCCCTCACCGTCCCAGCTTGACCTTCAACGCCCTCTACCCACGGGGCTCATACTaGCTGCAGGGGCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: DLLYSTPHRPSLTFNALYPRGSY*LQGLGW
Trigger: CCAGCCCAGCCCCTGCAGTCAGTATGAGCCCCGTGG...GTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp GAGGAAGTGGCCTTCAGACGGCGTCTGTGCTGCGGGTaGTTTTCTGTGGGACGGCTTTGGGGGACCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EEVAFRRRLCCG*FSVGRLWGTCC
Trigger: GCAGCAGGTCCCCCAAAGCCGTCCCACAGAAAACAACCCGCAGCACAGACGCCGTCTGAAGGCCACTTCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR TCA 90 bp TCTTCACTCCGTCAGGCCAGTCTGAGGGCTCACCAGGACAACGGTGAAGGCCCTCTGCCCTTGGCTCCCTaGAATATGGCTGCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: SSLRQASLRAHQDNGEGPLPLAP*NMAAPP
Trigger: CGGAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAG...AGGGCCTTCACCGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGAGTGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp TCTTCACTCCGTCAGGCCAGTCTGAGGGCTCACCAGGACAACGGTGAAGGCCCTTTAGGGGTTCACTCTTaGAGAGGGCTGGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: SSLRQASLRAHQDNGEGPLGVHS*RGLGVG
Trigger: CCCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAA...AGGGCCTTCACCGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGAGTGAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp CCAGGAGCCCAAAGACAAGGAACCTGTGCAGAGAGAGGGCCAGGCCTGCTCTGGTGGCGGCACATTCACTaGGCTGGTCACTCGGAAGCA +
Preference number: 4 (lower is better)
Translates to: PGAQRQGTCAERGPGLLWWRHIH*AGHSEA
Trigger: TGCTTCCGAGTGACCAGCCCAGTGAATGTGCCGCCA...CCAGAGCAGGCCTGGCCCTCTCTCTGCACAGGTTCCTTGTCTTTGGGCTCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTTGACTCGACTGAAACCCAGGGGCTGGGCTGGTaGGAGTGTTGGCCACGGCCG +
Preference number: 4 (lower is better)
Translates to: ATALFSDPYRQALDSTETQGLGW*ECWPRP
Trigger: CGGCCGTGGCCAACACTCCCACCAGCCCAGCCCCTG...GGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGGAAAAGCGGAACCGCTaGCCGCACACATCGCAGGGG +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPEKRNR*PHTSQG
Trigger: CCCCTGCGATGTGTGCGGTCAGCGGTTCCGCTTTTC...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp GGGCTCACCAGGACAACGGTGAAGGCCCTGAAGGAGGCCGTGGAGTCAGGCAGAGGATGCGTGTGTATGTaGAGGTGTGAGAAAGGGTGC +
Preference number: 4 (lower is better)
Translates to: GLTRTTVKALKEAVESGRGCVCM*RCEKGC
Trigger: GCACCCTTTCTCACACCTGCACATACACACGCATCC...TCTGCCTGACTCCACGGCCTCCTTCAGGGCCTTCACCGTTGTCCTGGTGAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp CATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCCACTGCTGTTATCTGTaGCCTCCTCCTCAGTCTCTT +
Preference number: 4 (lower is better)
Translates to: HLDQFRAHLAPPTMRPAPHCCYL*PPPQSL
Trigger: AAGAGACTGAGGAGGAGGCCACAGATAACAGCAGTG...GGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGCTGCCCTTGGCTCCCTaGAATATGGCTGCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPLPLAP*NMAAPP
Trigger: CGGAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAG...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp CCAGGAGCCCAAAGACAAGGAACCTGTGCAGAGAGAGGGCCAGGCCTGCTCTGGTCCCTGAAATATGGCTaGTCCTCCGTCTCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: PGAQRQGTCAERGPGLLWSLKYG*SSVSWR
Trigger: TCTCCACGAGACGGAGGAGCAGCCATATTTCAGGGA...CCAGAGCAGGCCTGGCCCTCTCTCTGCACAGGTTCCTTGTCTTTGGGCTCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp AGATGTTCCTTCTCCCAACTTCCAGGAACCCGTTCCTCTCAGTTCGAGGGGCACTACGGCCTCGAGTTGTaGGGGGTGCAGGGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: RCSFSQLPGTRSSQFEGHYGLEL*GVQGKW
Trigger: CCACTTCCCCTGCACCCCGCACAACTCGAGGCCGTA...GTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGAAGTTGGGAGAAGGAACATCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR GCA 90 bp CAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCCTGGGCCAAGCCCTCCATGTCTTTTGTGTGTaGAACCATGTGTTTTCGTAC +
Preference number: 4 (lower is better)
Translates to: QSPPGSTHHAASSLGQALHVFCV*NHVFSY
Trigger: GTACGAAAACACATGGTTGCACACACAAAAGACATG...GAGGGCTTGGCCCAGGGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp TCTTCACTCCGTCAGGCCAGTCTGAGGGCTCACCAGGACAACGGTGAAGGCCCTCGCCTGTGTGAGTTCTaGGGTGCCTCTTCATGTTGG +
Preference number: 4 (lower is better)
Translates to: SSLRQASLRAHQDNGEGPRLCEF*GASSCW
Trigger: CCAACATGAAGAGGCACCGCAGAACTCACACAGGCG...AGGGCCTTCACCGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGAGTGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GGCTCCCTGGCTCCCTACATGGTAAGGCAGATGGAGAGGCTGTGCTCGTTCACGCACCATGGTAGAAGGTaGGTGGCGCCTGACTTCGAT +
Preference number: 4 (lower is better)
Translates to: GSLAPYMVRQMERLCSFTHHGRR*VAPDFD
Trigger: ATCGAAGTCAGGCGCCACCCACCTTCTACCATGGTG...CGTGAACGAGCACAGCCTCTCCATCTGCCTTACCATGTAGGGAGCCAGGGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp TCTTCACTCCGTCAGGCCAGTCTGAGGGCTCACCAGGACAACGGTGAAGGCCCTTGTTGGGTCGGCTGGTaGAGCTTTTGCCGCAGATTT +
Preference number: 4 (lower is better)
Translates to: SSLRQASLRAHQDNGEGPCWVGW*SFCRRF
Trigger: AAATCTGCGGCAAAAGCTTCACCAGCCGACCCAACA...AGGGCCTTCACCGTTGTCCTGGTGAGCCCTCAGACTGGCCTGACGGAGTGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp GCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTTGACTCGACTGAAACCGAAAAGCGGAACCGCTaGCCGCACACATCGCAGGGG +
Preference number: 4 (lower is better)
Translates to: ATALFSDPYRQALDSTETEKRNR*PHTSQG
Trigger: CCCCTGCGATGTGTGCGGTCAGCGGTTCCGCTTTTC...GGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR TCA 90 bp AGGAAACAGGCCCACCCCTCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATCCACGGGGCTCATACTaGCTGCAGGGGCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: RKQAHPSLRRRPRYKSKHPRGSY*LQGLGW
Trigger: CCAGCCCAGCCCCTGCAGTCAGTATGAGCCCCGTGG...ATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGAGGGGTGGGCCTGTTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp GGCTCCCTGGCTCCCTACATGGTAAGGCAGATGGAGAGGCTGTGCTCGTTCACGTCCCTGAAATATGGCTaGTCCTCCGTCTCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: GSLAPYMVRQMERLCSFTSLKYG*SSVSWR
Trigger: TCTCCACGAGACGGAGGAGCAGCCATATTTCAGGGA...CGTGAACGAGCACAGCCTCTCCATCTGCCTTACCATGTAGGGAGCCAGGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp ACCTGGCGCCTTGACGCTGCTGCGCCTGGCACCCAGCTTCACCCTCCGCCAGTCCATGTCTTTTGTGTGTaGAACCATGTGTTTTCGTAC +
Preference number: 4 (lower is better)
Translates to: TWRLDAAAPGTQLHPPPVHVFCV*NHVFSY
Trigger: GTACGAAAACACATGGTTGCACACACAAAAGACATG...GACTGGCGGAGGGTGAAGCTGGGTGCCAGGCGCAGCAGCGTCAAGGCGCCAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CCA 90 bp AGATCTTACTATGAGGTCTGGGGACCCCTCTGGGACGCTGGGCTAGAAGGCGTCCACCATGGTAGAAGGTaGGTGGCGCCTGACTTCGAT +
Preference number: 4 (lower is better)
Translates to: RSYYEVWGPLWDAGLEGVHHGRR*VAPDFD
Trigger: ATCGAAGTCAGGCGCCACCCACCTTCTACCATGGTG...GACGCCTTCTAGCCCAGCGTCCCAGAGGGGTCCCCAGACCTCATAGTAAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGTGGCGGCACATTCACTaGGCTGGTCACTCGGAAGCA +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPWRHIH*AGHSEA
Trigger: TGCTTCCGAGTGACCAGCCCAGTGAATGTGCCGCCA...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp TGCATGACCGAGGGGACACCTCACAAGGTTCTCTTCTaGCCCCACAGTGGTGACCCTGTACCCATACACCCG +
Preference number: 4 (lower is better)
Translates to: CMTEGTPHKVLF*PHSGDPVPIHP
Trigger: CGGGTGTATGGGTACAGGGTCACCACTGTGGGGCAAGAAGAGAACCTTGTGAGGTGTCCCCTCGGTCATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR TCA 90 bp CGTTCACGGGAGCCAGAGACACAGAAACAAGCCACTGCTCTCTTTTCAGACCCATTAGGGGTTCACTCTTaGAGAGGGCTGGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: RSREPETQKQATALFSDPLGVHS*RGLGVG
Trigger: CCCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAA...TGGGTCTGAAAAGAGAGCAGTGGCTTGTTTCTGTGTCTCTGGCTCCCGTGAACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp CCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACATACGGCCTCGAGTTGTaGGGGGTGCAGGGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: PARLCSQHQKLNRIHCSTYGLEL*GVQGKW
Trigger: CCACTTCCCCTGCACCCCGCACAACTCGAGGCCGTA...TGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp GACCTTCTTTACAGCACCCCTCACCGTCCCAGCTTGACCTTCAACGCCCTCTACCGCCTGTGTGAGTTCTaGGGTGCCTCTTCATGTTGG +
Preference number: 4 (lower is better)
Translates to: DLLYSTPHRPSLTFNALYRLCEF*GASSCW
Trigger: CCAACATGAAGAGGCACCGCAGAACTCACACAGGCG...GTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGCACCATGGTAGAAGGTaGGTGGCGCCTGACTTCGAT +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPHHGRR*VAPDFD
Trigger: ATCGAAGTCAGGCGCCACCCACCTTCTACCATGGTG...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACGGTCGAGCTCCTGGCTaGCACCATGGTAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYGRAPG*HHGRRW
Trigger: CCACCTTCTACCATGGTGCCAGCCAGGAGCTCGACC...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGGGACAGGCGTCTCTTTaGACTGGGAAGAGACACCCT +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPGQASL*TGKRHP
Trigger: AGGGTGTCTCTTCCCAGTCCAAAGAGACGCCTGTCC...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp GGGCCGTACACCCTGCTCACCCAGGTACTTAAAGACTCGTTGCATGTACTCATTCTGCCCTTGGCTCCCTaGAATATGGCTGCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: GPYTLLTQVLKDSLHVLILPLAP*NMAAPP
Trigger: CGGAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAG...AATGAGTACATGCAACGAGTCTTTAAGTACCTGGGTGAGCAGGGTGTACGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR TCA 90 bp GGGCTCACCAGGACAACGGTGAAGGCCCTGAAGGAGGCCGTGGAGTCAGGCAGAGGGACCAGAGTTTCTTaGAGGATTTGTTACAGGAAA +
Preference number: 4 (lower is better)
Translates to: GLTRTTVKALKEAVESGRGTRVS*RICYRK
Trigger: TTTCCTGTAACAAATCCTTCAAGAAACTCTGGTCCC...TCTGCCTGACTCCACGGCCTCCTTCAGGGCCTTCACCGTTGTCCTGGTGAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp GACCTTCTTTACAGCACCCCTCACCGTCCCAGCTTGACCTTCAACGCCCTCTACGGATGCGTGTGTATGTaGAGGTGTGAGAAAGGGTGC +
Preference number: 4 (lower is better)
Translates to: DLLYSTPHRPSLTFNALYGCVCM*RCEKGC
Trigger: GCACCCTTTCTCACACCTGCACATACACACGCATCC...GTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGCCCGCTTCTTCCTCTTaGGTAGCTCTGCACTTTTCC +
Preference number: 4 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPPASSS*VALHFS
Trigger: GGAAAAGTGCAGAGCTACCCAAGAGGAAGAAGCGGG...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp CGTTCACGGGAGCCAGAGACACAGAAACAAGCCACTGCTCTCTTTTCAGACCCATGGCGGCACATTCACTaGGCTGGTCACTCGGAAGCA +
Preference number: 4 (lower is better)
Translates to: RSREPETQKQATALFSDPWRHIH*AGHSEA
Trigger: TGCTTCCGAGTGACCAGCCCAGTGAATGTGCCGCCA...TGGGTCTGAAAAGAGAGCAGTGGCTTGTTTCTGTGTCTCTGGCTCCCGTGAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACTGGGATCTGGACAGCTaGCGGCACATTCACTGGGCT +
Preference number: 4 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYWDLDS*RHIHWA
Trigger: AGCCCAGTGAATGTGCCGCCAGCTGTCCAGATCCCA...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp AGGAAACAGGCCCACCCCTCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATTCGAGTTGTGCGGGGTaGAGGGGAAGTGGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: RKQAHPSLRRRPRYKSKHSSCAG*RGSGSC
Trigger: GCAGCTACCACTTCCCCTGCACCCCGCACAACTCGA...ATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGAGGGGTGGGCCTGTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp CCTGCCTTCTCAGTATTCACTTTGAGTCTCTCTCATTCAGCCCTGTGCTCCTCATCGAGTTGTGCGGGGTaGAGGGGAAGTGGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: PAFSVFTLSLSHSALCSSSSCAG*RGSGSC
Trigger: GCAGCTACCACTTCCCCTGCACCCCGCACAACTCGA...TGAGGAGCACAGGGCTGAATGAGAGAGACTCAAAGTGAATACTGAGAAGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR GCA 90 bp CCTCACCCCTACTCCCAACCCCTCATATTCTGGAAGATAATTCACCTGGTTTTTGGGATGGGGAGGTGGTaGGCGTGGTGTGGATGCGTG +
Preference number: 4 (lower is better)
Translates to: PHPYSQPLIFWKIIHLVFGMGRW*AWCGCV
Trigger: CACGCATCCACACCACGCGCACCACCTCCCCATCCC...AAAAACCAGGTGAATTATCTTCCAGAATATGAGGGGTTGGGAGTAGGGGTGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACCACCATGGTAGAAGGTaGGTGGCGCCTGACTTCGAT +
Preference number: 4 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYHHGRR*VAPDFD
Trigger: ATCGAAGTCAGGCGCCACCCACCTTCTACCATGGTG...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp ATTGCTTCCCAAGACTGTAGGTTAGCTAGTGAGCTGTTATTGCATAACAATGCCCAGGGGCTGGGCTGGTaGGAGTGTTGGCCACGGCCG +
Preference number: 4 (lower is better)
Translates to: IASQDCRLASELLLHNNAQGLGW*ECWPRP
Trigger: CGGCCGTGGCCAACACTCCCACCAGCCCAGCCCCTG...GGCATTGTTATGCAATAACAGCTCACTAGCTAACCTACAGTCTTGGGAAGCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGCTGCAGGGGCTGGGCTaGTGGGAGTGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMLQGLG*WECWPR
Trigger: CCGTGGCCAACACTCCCACCAGCCCAGCCCCTGCAG...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp AACATTAGCATGAAGTTGGTTACCGTACACATCCAAAGGCCCAGCATGTTGGGGACTGACTGCAGGGGCTaGGCTGGTGGGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: NISMKLVTVHIQRPSMLGTDCRG*AGGSVG
Trigger: GCCAACACTCCCACCAGCCCAGCCCCTGCAGTCAGT...CCCCAACATGCTGGGCCTTTGGATGTGTACGGTAACCAACTTCATGCTAATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp TATGTGCGCCCCAGCGGCAGCTCGCGCTCCTTTAGTTaGAAGGGTAGGTACTCAGGAAGACTTCATCAGATG +
Preference number: 4 (lower is better)
Translates to: YVRPSGSSRSFS*KGRYSGRLHQM
Trigger: CATCTGATGAAGTCTTCCTGAGTACCTACCCTTCAAACTAAAGGAGCGCGAGCTGCCGCTGGGGCGCACATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp CTTGAGTCTAGTGGGTGGGTAGACAGCAGGTGGATTTaGAGAGGTGGCCTCCAGGCAGTCTTGTGGTTGAGA +
Preference number: 4 (lower is better)
Translates to: LESSGWVDSRWI*RGGLQAVLWLR
Trigger: TCTCAACCACAAGACTGCCTGGAGGCCACCTCTCAAAATCCACCTGCTGTCTACCCACCCACTAGACTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp TCACGCTGGGGGAAGTCCCAGTTTCAGAGGTGTCTCTaGGCTTTGGGATTGCACCCCATCATTGAGACTCTC +
Preference number: 4 (lower is better)
Translates to: SRWGKSQFQRCL*ALGLHPIIETL
Trigger: GAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCCCAGCGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR TCA 90 bp AGCGTGTGCTTACACATGAGAGGTCCCCACTGCTGTCACAGATGTGATAGGGCATGTTGGGTCGGCTGGTaGAGCTTTTGCCGCAGATTT +
Preference number: 4 (lower is better)
Translates to: SVCLHMRGPHCCHRCDRACWVGW*SFCRRF
Trigger: AAATCTGCGGCAAAAGCTTCACCAGCCGACCCAACA...TGCCCTATCACATCTGTGACAGCAGTGGGGACCTCTCATGTGTAAGCACACGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp GCCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTTGACTCGACTGAAACCGGATGCGTGTGTATGTaGAGGTGTGAGAAAGGGTGC +
Preference number: 4 (lower is better)
Translates to: ATALFSDPYRQALDSTETGCVCM*RCEKGC
Trigger: GCACCCTTTCTCACACCTGCACATACACACGCATCC...GGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGGGGATGGGGAGGTGGTaGGCGTGGTGTGGATGCGTG +
Preference number: 4 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMGMGRW*AWCGCV
Trigger: CACGCATCCACACCACGCGCACCACCTCCCCATCCC...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp AGCTCTTCCCCAAGTACACTGTCAACCCTGAGTCTGAGTCTTCAGCACGTGACAGGACAGGCGTCTCTTTaGACTGGGAAGAGACACCCT +
Preference number: 4 (lower is better)
Translates to: SSSPSTLSTLSLSLQHVTGQASL*TGKRHP
Trigger: AGGGTGTCTCTTCCCAGTCCAAAGAGACGCCTGTCC...TGTCACGTGCTGAAGACTCAGACTCAGGGTTGACAGTGTACTTGGGGAAGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp AGATGTTCCTTCTCCCAACTTCCAGGAACCCGTTCCTCTCAGTTCGAGGGGCACCACTGCTGTTATCTGTaGCCTCCTCCTCAGTCTCTT +
Preference number: 4 (lower is better)
Translates to: RCSFSQLPGTRSSQFEGHHCCYL*PPPQSL
Trigger: AAGAGACTGAGGAGGAGGCCACAGATAACAGCAGTG...GTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGAAGTTGGGAGAAGGAACATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CCA 90 bp CGTTCACGGGAGCCAGAGACACAGAAACAAGCCACTGCTCTCTTTTCAGACCCACCCGCTTCTTCCTCTTaGGTAGCTCTGCACTTTTCC +
Preference number: 4 (lower is better)
Translates to: RSREPETQKQATALFSDPPASSS*VALHFS
Trigger: GGAAAAGTGCAGAGCTACCCAAGAGGAAGAAGCGGG...TGGGTCTGAAAAGAGAGCAGTGGCTTGTTTCTGTGTCTCTGGCTCCCGTGAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp CTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTGCTTTAGGAGGGAACTATCAACTGCAGGGGCTGGGCTaGTGGGAGTGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: LFPHRKSSSVFALGGNYQLQGLG*WECWPR
Trigger: CCGTGGCCAACACTCCCACCAGCCCAGCCCCTGCAG...TTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp AAGAACACTGGACTTCCTTTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGCTGCAGGGGCTGGGCTaGTGGGAGTGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: KNTGLPLRNEKVQVTSGLLQGLG*WECWPR
Trigger: CCGTGGCCAACACTCCCACCAGCCCAGCCCCTGCAG...CAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAAAGGAAGTCCAGTGTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACAAGGTGTCCTCGCTCTaGCTTCTGTGGTTTAGGGGT +
Preference number: 4 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYKVSSL*LLWFRG
Trigger: ACCCCTAAACCACAGAAGCCAGAGCGAGGACACCTT...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR CAA 72 bp GCGGTCTCCCTCCTCTGGAGAGGGCAGGCAACAGTATaGGGGGTTTCCTCTCACTACATTTTTAATGGCAGA +
Preference number: 4 (lower is better)
Translates to: AVSLLWRGQATV*GVSSHYIFNGR
Trigger: TCTGCCATTAAAAATGTAGTGAGAGGAAACCCCCAATACTGTTGCCTGCCCTCTCCAGAGGAGGGAGACCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp AATGACCTTCTTTACAGCACCCCTCACCGTCCCAGCTaGACCTTCAACGCCCTCTACAGAGGTAAGGATTCC +
Preference number: 4 (lower is better)
Translates to: NDLLYSTPHRPS*TFNALYRGKDS
Trigger: GGAATCCTTACCTCTGTAGAGGGCGTTGAAGGTCAAGCTGGGACGGTGAGGGGTGCTGTAAAGAAGGTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp GCAGCAGAATCCGTTGGCAGGTTTCTCTGGCTTCTGTaGCTTTGGCCTTCACTCTCCAAGCCGGAAGCATTT +
Preference number: 4 (lower is better)
Translates to: AAESVGRFLWLL*LWPSLSKPEAF
Trigger: AAATGCTTCCGGCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAACGGATTCTGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp GCTGGGTCCCTGCTAGCTACTTGGAGAAAGGTACCTTaGCAACTCTTGGGACTGAAAGGCAGCAGAATCCGT +
Preference number: 4 (lower is better)
Translates to: AGSLLATWRKVP*QLLGLKGSRIR
Trigger: ACGGATTCTGCTGCCTTTCAGTCCCAAGAGTTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAGGGACCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp CTGGGTAAGATGGGTCCTGCCTTCTCAGTATTCACTTaGAGTCTCTCTCATTCAGCCCTGTGCTCCTCAGGG +
Preference number: 4 (lower is better)
Translates to: LGKMGPAFSVFT*SLSHSALCSSG
Trigger: CCCTGAGGAGCACAGGGCTGAATGAGAGAGACTCAAAGTGAATACTGAGAAGGCAGGACCCATCTTACCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR TCA 90 bp CCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACATGTTGGGTCGGCTGGTaGAGCTTTTGCCGCAGATTT +
Preference number: 4 (lower is better)
Translates to: PARLCSQHQKLNRIHCSTCWVGW*SFCRRF
Trigger: AAATCTGCGGCAAAAGCTTCACCAGCCGACCCAACA...TGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp CATACTACACACAGAGCACACATCAGCTTCCTTTTTCCTCCGTCTTTCATACATGGGAGCAGCTGGAGCTaGGGCCAGTGGGATCTGGAC +
Preference number: 4 (lower is better)
Translates to: HTTHRAHISFLFPPSFIHGSSWS*GQWDLD
Trigger: GTCCAGATCCCACTGGCCTCAGCTCCAGCTGCTCCC...ATGTATGAAAGACGGAGGAAAAAGGAAGCTGATGTGTGCTCTGTGTGTAGTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp GGGCCGTACACCCTGCTCACCCAGGTACTTAAAGACTCGTTGCATGTACTCATTTCCCTGAAATATGGCTaGTCCTCCGTCTCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: GPYTLLTQVLKDSLHVLISLKYG*SSVSWR
Trigger: TCTCCACGAGACGGAGGAGCAGCCATATTTCAGGGA...AATGAGTACATGCAACGAGTCTTTAAGTACCTGGGTGAGCAGGGTGTACGGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR GCA 90 bp AGCGTGTGCTTACACATGAGAGGTCCCCACTGCTGTCACAGATGTGATAGGGCATCTCTCCGTAGTCACTaGTGTTATCTGTGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: SVCLHMRGPHCCHRCDRASLRSH*CYLWPP
Trigger: AGGAGGCCACAGATAACAGCAGTGACTACGGAGAGA...TGCCCTATCACATCTGTGACAGCAGTGGGGACCTCTCATGTGTAAGCACACGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp CCAGTCAGTGTGGACATCCACGTTTTAGAGACTGCAGGCATCTTAAAACTTAAAGGGATGGGGAGGTGGTaGGCGTGGTGTGGATGCGTG +
Preference number: 4 (lower is better)
Translates to: PVSVDIHVLETAGILKLKGMGRW*AWCGCV
Trigger: CACGCATCCACACCACGCGCACCACCTCCCCATCCC...TTTAAGTTTTAAGATGCCTGCAGTCTCTAAAACGTGGATGTCCACACTGACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp AGCGTGTGCTTACACATGAGAGGTCCCCACTGCTGTCACAGATGTGATAGGGCACGCACTGTTCTTCTCTaGCAGGTGTCTCAGAAAGGT +
Preference number: 4 (lower is better)
Translates to: SVCLHMRGPHCCHRCDRARTVLL*QVSQKG
Trigger: ACCTTTCTGAGACACCTGGCAGAGAAGAACAGTGCG...TGCCCTATCACATCTGTGACAGCAGTGGGGACCTCTCATGTGTAAGCACACGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp CCTGCCTTCTCAGTATTCACTTTGAGTCTCTCTCATTCAGCCCTGTGCTCCTCAGGACAGGCGTCTCTTTaGACTGGGAAGAGACACCCT +
Preference number: 4 (lower is better)
Translates to: PAFSVFTLSLSHSALCSSGQASL*TGKRHP
Trigger: AGGGTGTCTCTTCCCAGTCCAAAGAGACGCCTGTCC...TGAGGAGCACAGGGCTGAATGAGAGAGACTCAAAGTGAATACTGAGAAGGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGACTGACTGCAGGGGCTaGGCTGGTGGGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMTDCRG*AGGSVG
Trigger: GCCAACACTCCCACCAGCCCAGCCCCTGCAGTCAGT...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp CCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACAAAGGTGTCCTCGCTCTaGCTTCTGTGGTTTAGGGGT +
Preference number: 4 (lower is better)
Translates to: PARLCSQHQKLNRIHCSTKVSSL*LLWFRG
Trigger: ACCCCTAAACCACAGAAGCCAGAGCGAGGACACCTT...TGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGGTGTATGTGCAGGTGTaGGAAAGGGTGCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMVYVQV*ERVRDG
Trigger: CCCGTCCCGCACCCTTTCTCACACCTGCACATACAC...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp CCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACATCTCTCCGTAGTCACTaGTGTTATCTGTGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: PARLCSQHQKLNRIHCSTSLRSH*CYLWPP
Trigger: AGGAGGCCACAGATAACAGCAGTGACTACGGAGAGA...TGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp AATCCGTTGGCAGGTTTCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCTCTCTCCGTAGTCACTaGTGTTATCTGTGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: NPLAGFSGFCCFGLHSPSSLRSH*CYLWPP
Trigger: AGGAGGCCACAGATAACAGCAGTGACTACGGAGAGA...GCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAACGGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR GCA 90 bp AACATTAGCATGAAGTTGGTTACCGTACACATCCAAAGGCCCAGCATGTTGGGGCGCCTGTGTGAGTTCTaGGGTGCCTCTTCATGTTGG +
Preference number: 4 (lower is better)
Translates to: NISMKLVTVHIQRPSMLGRLCEF*GASSCW
Trigger: CCAACATGAAGAGGCACCGCAGAACTCACACAGGCG...CCCCAACATGCTGGGCCTTTGGATGTGTACGGTAACCAACTTCATGCTAATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp CCTGCCTTCTCAGTATTCACTTTGAGTCTCTCTCATTCAGCCCTGTGCTCCTCACCCGCTTCTTCCTCTTaGGTAGCTCTGCACTTTTCC +
Preference number: 4 (lower is better)
Translates to: PAFSVFTLSLSHSALCSSPASSS*VALHFS
Trigger: GGAAAAGTGCAGAGCTACCCAAGAGGAAGAAGCGGG...TGAGGAGCACAGGGCTGAATGAGAGAGACTCAAAGTGAATACTGAGAAGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CCA 90 bp AACATTAGCATGAAGTTGGTTACCGTACACATCCAAAGGCCCAGCATGTTGGGGGGGCCTTCAGCATGTTaGAAAAGCGGAACCGCTGAC +
Preference number: 4 (lower is better)
Translates to: NISMKLVTVHIQRPSMLGGPSAC*KSGTAD
Trigger: GTCAGCGGTTCCGCTTTTCCAACATGCTGAAGGCCC...CCCCAACATGCTGGGCCTTTGGATGTGTACGGTAACCAACTTCATGCTAATGTT
51% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp AAGGAGTTTAAGCACCTTGCCCAGAGGACCCCCAGCTCATGCTCAGAAGATCGCACCTTTAGAAACTGTTaGTCTCCAGCTGTCATCCAG +
Preference number: 4 (lower is better)
Translates to: KEFKHLAQRTPSSCSEDRTFRNC*SPAVIQ
Trigger: CTGGATGACAGCTGGAGACCAACAGTTTCTAAAGGT...GCGATCTTCTGAGCATGAGCTGGGGGTCCTCTGGGCAAGGTGCTTAAACTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp CCGTACACCCTGCTCACCCAGGTACTTAAAGACTCGTaGCATGTACTCATTGTAGTAGCCCTCGCGATAGGT +
Preference number: 4 (lower is better)
Translates to: PYTLLTQVLKDS*HVLIVVALAIG
Trigger: ACCTATCGCGAGGGCTACTACAATGAGTACATGCAACGAGTCTTTAAGTACCTGGGTGAGCAGGGTGTACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp CCCCCTTCTCACTGTGGCACAAGAGAACAAGTCCCTTaGTCCCCCTTCACCTCCTTTATTGGTCTGAAACTC +
Preference number: 4 (lower is better)
Translates to: PPSHCGTREQVP*SPFTSFIGLKL
Trigger: GAGTTTCAGACCAATAAAGGAGGTGAAGGGGGACAAAGGGACTTGTTCTCTTGTGCCACAGTGAGAAGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp TGGGGGAAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTaGGGATTGCACCCCATCATTGAGACTCTCCTAAGT +
Preference number: 4 (lower is better)
Translates to: WGKSQFQRCLLA*GLHPIIETLLS
Trigger: ACTTAGGAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTTCCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR TCA 90 bp CTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTGCTTTAGGAGGGAACTATCAACTGCCCTTGGCTCCCTaGAATATGGCTGCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: LFPHRKSSSVFALGGNYQLPLAP*NMAAPP
Trigger: CGGAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAG...TTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp CTGTTTCCTCACCGAAAGAGCTCATCTGTTTTTGCTTTAGGAGGGAACTATCAAGTGTATGTGCAGGTGTaGGAAAGGGTGCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: LFPHRKSSSVFALGGNYQVYVQV*ERVRDG
Trigger: CCCGTCCCGCACCCTTTCTCACACCTGCACATACAC...TTGATAGTTCCCTCCTAAAGCAAAAACAGATGAGCTCTTTCGGTGAGGAAACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR TCA 90 bp AAGAACACTGGACTTCCTTTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGTTAGGGGTTCACTCTTaGAGAGGGCTGGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: KNTGLPLRNEKVQVTSGLLGVHS*RGLGVG
Trigger: CCCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAA...CAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAAAGGAAGTCCAGTGTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp AGTCACGACATTCAGAAAAGGAACCTGCTTCCTTGTTaGCCTCGGGTTTGTGAGGGCTGCAAGAATGCATGC +
Preference number: 4 (lower is better)
Translates to: SHDIQKRNLLPC*PRVCEGCKNAC
Trigger: GCATGCATTCTTGCAGCCCTCACAAACCCGAGGCAAACAAGGAAGCAGGTTCCTTTTCTGAATGTCGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp TTTGCAACTCTTGGGACTGAAAGGCAGCAGAATCCGTaGGCAGGTTTCTCTGGCTTCTGTTGCTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: FATLGTERQQNP*AGFSGFCCFGL
Trigger: AAGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAACGGATTCTGCTGCCTTTCAGTCCCAAGAGTTGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp CTGCTAGCTACTTGGAGAAAGGTACCTTTGCAACTCTaGGGACTGAAAGGCAGCAGAATCCGTTGGCAGGTT +
Preference number: 4 (lower is better)
Translates to: LLATWRKVPLQL*GLKGSRIRWQV
Trigger: AACCTGCCAACGGATTCTGCTGCCTTTCAGTCCCAAGAGTTGCAAAGGTACCTTTCTCCAAGTAGCTAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp GACAGGAACTGGTTAGAGCTTGAGGATGCTGCAGGGTaGGCCCACTTTCCTTTACACGAACCCTTTTGTCTT +
Preference number: 4 (lower is better)
Translates to: DRNWLELEDAAG*AHFPLHEPFCL
Trigger: AAGACAAAAGGGTTCGTGTAAAGGAAAGTGGGCCAACCCTGCAGCATCCTCAAGCTCTAACCAGTTCCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
3UTR CAA 72 bp AAGTGTCTTGGCTTCTGCCATCCCTCTGCCTTGAATTaGGGGACGGTCACTTCCATAGGTTTCTGGGAAACA +
Preference number: 4 (lower is better)
Translates to: KCLGFCHPSALN*GTVTSIGFWET
Trigger: TGTTTCCCAGAAACCTATGGAAGTGACCGTCCCCAAATTCAAGGCAGAGGGATGGCAGAAGCCAAGACACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR GCA 90 bp TTAATGCTCTGGACTAACCTCACAGCCTTCCCGATCAGTATAAAGGAAACAGGCTCCCTGAAATATGGCTaGTCCTCCGTCTCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: LMLWTNLTAFPISIKETGSLKYG*SSVSWR
Trigger: TCTCCACGAGACGGAGGAGCAGCCATATTTCAGGGA...GCCTGTTTCCTTTATACTGATCGGGAAGGCTGTGAGGTTAGTCCAGAGCATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp CCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACATCTTCCTTGACAGTATaGACATCAGACACTGCCCTT +
Preference number: 4 (lower is better)
Translates to: PARLCSQHQKLNRIHCSTSSLTV*TSDTAL
Trigger: AAGGGCAGTGTCTGATGTGCATACTGTCAAGGAAGA...TGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp TGCCCAGCAGAGACATCCAATTCATTGACTAACTTTGTACTGAACCTTGCTTTTTCGAGTTGTGCGGGGTaGAGGGGAAGTGGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: CPAETSNSLTNFVLNLAFSSCAG*RGSGSC
Trigger: GCAGCTACCACTTCCCCTGCACCCCGCACAACTCGA...AAAAGCAAGGTTCAGTACAAAGTTAGTCAATGAATTGGATGTCTCTGCTGGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS-3UTR GCA 90 bp AACATTAGCATGAAGTTGGTTACCGTACACATCCAAAGGCCCAGCATGTTGGGGCGCACTGTTCTTCTCTaGCAGGTGTCTCAGAAAGGT +
Preference number: 4 (lower is better)
Translates to: NISMKLVTVHIQRPSMLGRTVLL*QVSQKG
Trigger: ACCTTTCTGAGACACCTGGCAGAGAAGAACAGTGCG...CCCCAACATGCTGGGCCTTTGGATGTGTACGGTAACCAACTTCATGCTAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGGGGCCTTCAGCATGTTaGAAAAGCGGAACCGCTGAC +
Preference number: 4 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMGPSAC*KSGTAD
Trigger: GTCAGCGGTTCCGCTTTTCCAACATGCTGAAGGCCC...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR CAA 72 bp TTCAAGTCTCCCACGGTGTGCGACCATCAATCAGTCTaGGGTGCCTGGGTACTAATAACTGGAAGGAAAGAT +
Preference number: 4 (lower is better)
Translates to: FKSPTVCDHQSV*GAWVLITGRKD
Trigger: ATCTTTCCTTCCAGTTATTAGTACCCAGGCACCCAAGACTGATTGATGGTCGCACACCGTGGGAGACTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp CCACTGCTCTCTTTTCAGACCCATACAGGCAGGCTCTaGACTCGACTGAAACCATCCGATTTCCTTTTGACA +
Preference number: 4 (lower is better)
Translates to: PLLSFQTHTGRL*TRLKPSDFLLT
Trigger: TGTCAAAAGGAAATCGGATGGTTTCAGTCGAGTCAAGAGCCTGCCTGTATGGGTCTGAAAAGAGAGCAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp AAGTCCCAGTTTCAGAGGTGTCTCTTGGCTTTGGGATaGCACCCCATCATTGAGACTCTCCTAAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: KSQFQRCLLALG*HPIIETLLSVL
Trigger: CAAGACACTTAGGAGAGTCTCAATGATGGGGTGCAATCCCAAAGCCAAGAGACACCTCTGAAACTGGGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR GCA 90 bp TTAATGCTCTGGACTAACCTCACAGCCTTCCCGATCAGTATAAAGGAAACAGGCCGCACTGTTCTTCTCTaGCAGGTGTCTCAGAAAGGT +
Preference number: 4 (lower is better)
Translates to: LMLWTNLTAFPISIKETGRTVLL*QVSQKG
Trigger: ACCTTTCTGAGACACCTGGCAGAGAAGAACAGTGCG...GCCTGTTTCCTTTATACTGATCGGGAAGGCTGTGAGGTTAGTCCAGAGCATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp TTAATGCTCTGGACTAACCTCACAGCCTTCCCGATCAGTATAAAGGAAACAGGCCACTGCTGTTATCTGTaGCCTCCTCCTCAGTCTCTT +
Preference number: 4 (lower is better)
Translates to: LMLWTNLTAFPISIKETGHCCYL*PPPQSL
Trigger: AAGAGACTGAGGAGGAGGCCACAGATAACAGCAGTG...GCCTGTTTCCTTTATACTGATCGGGAAGGCTGTGAGGTTAGTCCAGAGCATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CCA 90 bp AAGAACACTGGACTTCCTTTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGAAGGTGTCCTCGCTCTaGCTTCTGTGGTTTAGGGGT +
Preference number: 4 (lower is better)
Translates to: KNTGLPLRNEKVQVTSGLKVSSL*LLWFRG
Trigger: ACCCCTAAACCACAGAAGCCAGAGCGAGGACACCTT...CAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAAAGGAAGTCCAGTGTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp AGGCTCTTGACTCGACTGAAACCATCCGATTTCCTTTaGACATTAAACAAAGCCCCAGCTTCCCTCCCTTTT +
Preference number: 4 (lower is better)
Translates to: RLLTRLKPSDFL*TLNKAPASLPF
Trigger: AAAAGGGAGGGAAGCTGGGGCTTTGTTTAATGTCAAAAGGAAATCGGATGGTTTCAGTCGAGTCAAGAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
3UTR CAA 72 bp AGCTTTCGGTTTCATGGAACCAATATTAACAAAGGCTaGCTGGTTATGATGCCTGACGAGCCACATGGACCT +
Preference number: 4 (lower is better)
Translates to: SFRFHGTNINKG*LVMMPDEPHGP
Trigger: AGGTCCATGTGGCTCGTCAGGCATCATAACCAGCAAGCCTTTGTTAATATTGGTTCCATGAAACCGAAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR GCA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGCATGTCTTTTGTGTGTaGAACCATGTGTTTTCGTAC +
Preference number: 4 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMHVFCV*NHVFSY
Trigger: GTACGAAAACACATGGTTGCACACACAAAAGACATG...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
3UTR CAA 72 bp CAATGGACTGAATGCCCAGCAGAGACATCCAATTCATaGACTAACTTTGTACTGAACCTTGCTTTTGTACCT +
Preference number: 4 (lower is better)
Translates to: QWTECPAETSNS*TNFVLNLAFVP
Trigger: AGGTACAAAAGCAAGGTTCAGTACAAAGTTAGTCAATGAATTGGATGTCTCTGCTGGGCATTCAGTCCATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp CTTCTGTTAAGGATAGTGATGCTTACTGACTCGCTATaGGGTTTCCTATGTAGAGGACAGTTTCTTATGGCT +
Preference number: 4 (lower is better)
Translates to: LLLRIVMLTDSL*GFLCRGQFLMA
Trigger: AGCCATAAGAAACTGTCCTCTACATAGGAAACCCAATAGCGAGTCAGTAAGCATCACTATCCTTAACAGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp AACTTAAAAGTCAACTTGCCTTCCCATCCACATTTCTaGGTCACTACCAGCAATTACGTTTGTGATTTCAGT +
Preference number: 4 (lower is better)
Translates to: NLKVNLPSHPHF*VTTSNYVCDFS
Trigger: ACTGAAATCACAAACGTAATTGCTGGTAGTGACCAAGAAATGTGGATGGGAAGGCAAGTTGACTTTTAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
3UTR CAA 72 bp AAATTTACTGAAGCTGGAGAGCTACAAAGTTGCTCTTaGAAGCAACTTGAGGAAAATTCTCAGAGGAATCTG +
Preference number: 4 (lower is better)
Translates to: KFTEAGELQSCS*KQLEENSQRNL
Trigger: CAGATTCCTCTGAGAATTTTCCTCAAGTTGCTTCAAAGAGCAACTTTGTAGCTCTCCAGCTTCAGTAAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS TCA 90 bp GCGGGACGGGTCTCGAGGGAAGCACAGCACCCACGGGGCTCATACTaGCTGCAGGGGCTGGGCTGGTGGGAGTGTTGGCCACGGCCGGAG +
Preference number: 5 (lower is better)
Translates to: AGRVSREAQHPRGSY*LQGLGWWECWPRPE
Trigger: CTCCGGCCGTGGCCAACACTCCCACCAGCCCAGCCCCTGCAGTCAGTATGAGCCCCGTGGGTGCTGTGCTTCCCTCGAGACCCGTCCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CAA 90 bp GCATCTGGACCAGTTCAGAGCCCACCTGGCTCCACCCACCATGCGGCCAGCTCCGGCGCTTTAGCCTCCTaGGTGGCCCGCTTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: ASGPVQSPPGSTHHAASSGALAS*VARFFL
Trigger: GAGGAAGAAGCGGGCCACCAAGGAGGCTAAAGCGCC...GGAGCTGGCCGCATGGTGGGTGGAGCCAGGTGGGCTCTGAACTGGTCCAGATGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS TCA 90 bp GGGGAGGTGGTGCGCGTGGTGTGGATGCGTGTGTATGTGCAGGTGTaGGAAAGGGTGCGGGACGGGTCTCGAGGGAAGCACAGCACCCAC +
Preference number: 5 (lower is better)
Translates to: GEVVRVVWMRVYVQV*ERVRDGSRGKHSTH
Trigger: GTGGGTGCTGTGCTTCCCTCGAGACCCGTCCCGCACCCTTTCTCACACCTGCACATACACACGCATCCACACCACGCGCACCACCTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CAA 90 bp GGCTTTAGTTCGGTGGTTCCCCTGGTTTCAAGGGCAGTCGTCGTCTTCACTCCGAGGACAGGCGTCTCTTaGGACTGGGAAGAGACACCC +
Preference number: 5 (lower is better)
Translates to: GFSSVVPLVSRAVVVFTPRTGVS*DWEETP
Trigger: GGGTGTCTCTTCCCAGTCCAAAGAGACGCCTGTCCT...CGGAGTGAAGACGACGACTGCCCTTGAAACCAGGGGAACCACCGAACTAAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CAA 90 bp AAGGAGTTTAAGCACCTTGCCCAGAGGACCCCCAGCTCATGCTCAGAAGATCGCAGGACAGGCGTCTCTTaGGACTGGGAAGAGACACCC +
Preference number: 5 (lower is better)
Translates to: KEFKHLAQRTPSSCSEDRRTGVS*DWEETP
Trigger: GGGTGTCTCTTCCCAGTCCAAAGAGACGCCTGTCCT...GCGATCTTCTGAGCATGAGCTGGGGGTCCTCTGGGCAAGGTGCTTAAACTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CAA 90 bp GCCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACTTTAGGGGTTCACTCTaGAAGAGGGCTGGGGGTGGG +
Preference number: 5 (lower is better)
Translates to: ASSTLQPAPKAEPNSLQYFRGSL*KRAGGG
Trigger: CCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAAA...GTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CAA 90 bp CCAGCTCGACTCTGCAGCCAGCACCAAAAGCTGAACCGAATTCATTGCAGTACATTTAGGGGTTCACTCTaGAAGAGGGCTGGGGGTGGG +
Preference number: 5 (lower is better)
Translates to: PARLCSQHQKLNRIHCSTFRGSL*KRAGGG
Trigger: CCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAAA...TGTACTGCAATGAATTCGGTTCAGCTTTTGGTGCTGGCTGCAGAGTCGAGCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CAA 90 bp TTAATGCTCTGGACTAACCTCACAGCCTTCCCGATCAGTATAAAGGAAACAGGCGGCGCTTTAGCCTCCTaGGTGGCCCGCTTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: LMLWTNLTAFPISIKETGGALAS*VARFFL
Trigger: GAGGAAGAAGCGGGCCACCAAGGAGGCTAAAGCGCC...GCCTGTTTCCTTTATACTGATCGGGAAGGCTGTGAGGTTAGTCCAGAGCATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CAA 90 bp TCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATACCTCATCCGCTGATATGAGGACAGGCGTCTCTTaGGACTGGGAAGAGACACCC +
Preference number: 5 (lower is better)
Translates to: SLRRRPRYKSKHTSSADMRTGVS*DWEETP
Trigger: GGGTGTCTCTTCCCAGTCCAAAGAGACGCCTGTCCT...CATATCAGCGGATGAGGTATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CAA 90 bp AGCGTGTGCTTACACATGAGAGGTCCCCACTGCTGTCACAGATGTGATAGGGCAAGGGACCAGAGTTTCTaGAAGGATTTGTTACAGGAA +
Preference number: 5 (lower is better)
Translates to: SVCLHMRGPHCCHRCDRARDQSF*KDLLQE
Trigger: TTCCTGTAACAAATCCTTCAAGAAACTCTGGTCCCT...TGCCCTATCACATCTGTGACAGCAGTGGGGACCTCTCATGTGTAAGCACACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CAA 90 bp AAGAACACTGGACTTCCTTTAAGAAATGAGAAAGTGCAAGTGACCTCAGGACTGTTTAGGGGTTCACTCTaGAAGAGGGCTGGGGGTGGG +
Preference number: 5 (lower is better)
Translates to: KNTGLPLRNEKVQVTSGLFRGSL*KRAGGG
Trigger: CCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAAA...CAGTCCTGAGGTCACTTGCACTTTCTCATTTCTTAAAGGAAGTCCAGTGTTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS-3UTR CAA 90 bp AATCCGTTGGCAGGTTTCTCTGGCTTCTGTTGCTTTGGCCTTCACTCTCCAAGCAGGGACCAGAGTTTCTaGAAGGATTTGTTACAGGAA +
Preference number: 5 (lower is better)
Translates to: NPLAGFSGFCCFGLHSPSRDQSF*KDLLQE
Trigger: TTCCTGTAACAAATCCTTCAAGAAACTCTGGTCCCT...GCTTGGAGAGTGAAGGCCAAAGCAACAGAAGCCAGAGAAACCTGCCAACGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133070.8
CDS-3UTR CAA 90 bp AGGAAACAGGCCCACCCCTCTCTGAGGAGAAGACCGAGATATAAAAGCAAGCATAGGGACCAGAGTTTCTaGAAGGATTTGTTACAGGAA +
Preference number: 5 (lower is better)
Translates to: RKQAHPSLRRRPRYKSKHRDQSF*KDLLQE
Trigger: TTCCTGTAACAAATCCTTCAAGAAACTCTGGTCCCT...ATGCTTGCTTTTATATCTCGGTCTTCTCCTCAGAGAGGGGTGGGCCTGTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
CDS-3UTR CAA 90 bp GAGGGAACTATCAACCCATTACACAGCACAAACTTTAATTTGGGACACGAGAGAAGGGACCAGAGTTTCTaGAAGGATTTGTTACAGGAA +
Preference number: 5 (lower is better)
Translates to: EGTINPLHSTNFNLGHERRDQSF*KDLLQE
Trigger: TTCCTGTAACAAATCCTTCAAGAAACTCTGGTCCCT...TCTCTCGTGTCCCAAATTAAAGTTTGTGCTGTGTAATGGGTTGATAGTTCCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107717.8
CDS TCA 72 bp GTCTCGAGGGAAGCACAGCACCCACGGGGCTCATACTaGCTGCAGGGGCTGGGCTGGTGGGAGTGTTGGCCA +
Preference number: 6 (lower is better)
Translates to: VSREAQHPRGSY*LQGLGWWECWP
Trigger: TGGCCAACACTCCCACCAGCCCAGCCCCTGCAGTCAGTATGAGCCCCGTGGGTGCTGTGCTTCCCTCGAGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8
CDS CCA 72 bp GTCGAGCTCCTGGCTGGCACCATGGTAGAAGGTGGGTaGCGCCTGACTTCGATGGCTCTCTTCCTGGGCCAT +
Preference number: 6 (lower is better)
Translates to: VELLAGTMVEGG*RLTSMALFLGH
Trigger: ATGGCCCAGGAAGAGAGCCATCGAAGTCAGGCGCCACCCACCTTCTACCATGGTGCCAGCCAGGAGCTCGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000133070.8
ENSMUST00000148945.8
CDS CCA 72 bp AGGTGTCTCAGAAAGGTGTCCTCGCTCTGGCTTCTGTaGTTTAGGGGTTCACTCTTGAAGAGGGCTGGGGGT +
Preference number: 6 (lower is better)
Translates to: RCLRKVSSLWLL*FRGSLLKRAGG
Trigger: ACCCCCAGCCCTCTTCAAGAGTGAACCCCTAAACCACAGAAGCCAGAGCGAGGACACCTTTCTGAGACACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091565.5
ENSMUST00000107717.8
ENSMUST00000148945.8