Pregenerated sensors for ZFP647 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054967Ensembl transcript IDs: ENSMUST00000048854.8, ENSMUST00000229055.2, ENSMUST00000229865.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAAATTTAACACATGCTaGATGTTTCTCCCCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: KVELWLSLPVSTVVGLLSKFNTC*MFLPRR Trigger: CCTCCTGGGGAGAAACATTCAGCATGTGTTAAATTT...GGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| 3UTR CCA 72 bp | TTAACACATGCTGAATGTTTCTCCCCAGGAGGGACATaGGACTGTAACAGAGTCCCCAAGGGAACGACGATT | + |
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Preference number: 3 (lower is better) Translates to: LTHAECFSPGGT*DCNRVPKGTTI Trigger: AATCGTCGTTCCCTTGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR TCA 90 bp | GAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCAAGGGAACGGCGTCCTCTTCACGCTaGAGGTCTTCCCACACTCGC | + |
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Preference number: 4 (lower is better) Translates to: ECFSPGGTWDCNRVPKGTASSSR*RSSHTR Trigger: GCGAGTGTGGGAAGACCTTCAGCGTGAAGAGGACGC...CGTTCCCTTGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR GCA 90 bp | CACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCATGCACCCGCTGGTGCTaGAGCAGCGTCCTCTTCACG | + |
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Preference number: 4 (lower is better) Translates to: HMLNVSPQEGHGTVTESPCTRWC*SSVLFT Trigger: CGTGAAGAGGACGCTGCTGCAGCACCAGCGGGTGCA...TGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | GAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCAAGGGAACGCCGGTGTGGATCTTGTaGTGCTGGGCAAGGTCGGAA | + |
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Preference number: 4 (lower is better) Translates to: ECFSPGGTWDCNRVPKGTPVWIL*CWARSE Trigger: TTCCGACCTTGCCCAGCACCACAAGATCCACACCGG...CGTTCCCTTGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | TCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGCATGTTCTAAGTGCGGGCTTCCCTCAAAGGTCACTTTaGCCTGTGGTGCTGCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: SLLEEGCLGLVHVLSAGFPQRSL*PVVLLA Trigger: TGCCAGCAGCACCACAGGCCAAAGTGACCTTTGAGG...GAAGCCCGCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | TCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGCATGTTCTAAGTGCGGGCTTCTGGATCTTGTGGTGCTaGGCAAGGTCGGAACTCACG | + |
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Preference number: 4 (lower is better) Translates to: SLLEEGCLGLVHVLSAGFWILWC*ARSELT Trigger: CGTGAGTTCCGACCTTGCCCAGCACCACAAGATCCA...GAAGCCCGCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR GCA 90 bp | CACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCAGTGTGGGTCCTCAGGTaGACGATCAGAGTTGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: HMLNVSPQEGHGTVTESPVWVLR*TIRVAF Trigger: GAAAGCAACTCTGATCGTGCACCTGAGGACCCACAC...TGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | TCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGCATGTTCTAAGTGCGGGCTTCGCTTTGCATTCTGAGTaGTCACTTCCCAGGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SLLEEGCLGLVHVLSAGFALHSE*SLPRLW Trigger: CCAGAGCCTGGGAAGTGACCACTCAGAATGCAAAGC...GAAGCCCGCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | CACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCACTCAGGACGGAACTCTaGCTGAAAGCCTTTCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: HMLNVSPQEGHGTVTESPLRTEL*LKAFPH Trigger: ATGCGGAAAGGCTTTCAGCCAGAGTTCCGTCCTGAG...TGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR TCA 90 bp | ACAGAACTCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGCATGTTCTAAGTGCCTTGGCTTTGCATTCTaGGTGGTCACTTCCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: TELPPGGRLFRSCACSKCLGFAF*VVTSQA Trigger: AGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAG...GCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGAGTTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR TCA 90 bp | AATTTAACACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGGTGGGAGAGCTGGGTaGACGCCTTCCCACATTCCA | + |
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Preference number: 4 (lower is better) Translates to: NLTHAECFSPGGTWDCNRGGRAG*TPSHIP Trigger: TGGAATGTGGGAAGGCGTTCACCCAGCTCTCCCACC...TCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | AAGGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCCCGGTGTGCACCCGCTaGTGCTGCAGCAGCGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KVELWLSLPVSTVVGLLSPVCTR*CCSSVL Trigger: GAGGACGCTGCTGCAGCACCAGCGGGTGCACACCGG...GGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR TCA 90 bp | GGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGCGGGCCCACTCCTCCTaGGACAGCAGAACAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: GRIMAVFTSIYSCRITLQRAHSS*DSRTAT Trigger: TGTGGCTGTTCTGCTGTCTCAGGAGGAGTGGGCCCG...CTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR GCA 90 bp | CACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCATCTCTTCCTTGGCTTTaGATTCTGAGTGGTCACTTC | + |
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Preference number: 4 (lower is better) Translates to: HMLNVSPQEGHGTVTESPSLPWL*ILSGHF Trigger: GAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGA...TGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | AATTTAACACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGACATTCTGGGGGCCAATaGGCTTTGGACTGGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: NLTHAECFSPGGTWDCNRHSGGQ*ALDWGR Trigger: TCTGCCCCAGTCCAAAGCCCATTGGCCCCCAGAATG...TCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | GTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGTGTGTGCACCCTCTGGTaGCTCCGCAGGACGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VELWLSLPVSTVVGLLSSVCTLW*LRRTVL Trigger: CAGCACCGTCCTGCGGAGCCACCAGAGGGTGCACAC...ACTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR TCA 90 bp | GGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGCGTAGGTCTCCATCATaGCGTGTCGGTAGAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GRIMAVFTSIYSCRITLQRRSPS*RVGRGP Trigger: GGGGCCTCTACCGACACGTCATGATGGAGACCTACG...CTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR GCA 90 bp | GTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGTTGGATCAGGTGGCCGTaGTGGTTGAAGGCCCGTCCG | + |
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Preference number: 4 (lower is better) Translates to: VELWLSLPVSTVVGLLSSWIRWP*WLKARP Trigger: CGGACGGGCCTTCAACCAGCACGGCCACCTGATCCA...ACTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | AATTTAACACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAATGAGGTGGGAGAGCTaGGTGAACGCCTTCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: NLTHAECFSPGGTWDCNRMRWES*VNAFPH Trigger: ATGTGGGAAGGCGTTCACCCAGCTCTCCCACCTCAT...TCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | AATTTAACACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAATGAGATGCGAGTGCTaGACAAAGGCCTTCCCGCAC | + |
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Preference number: 4 (lower is better) Translates to: NLTHAECFSPGGTWDCNRMRCEC*TKAFPH Trigger: GTGCGGGAAGGCCTTTGTCCAGCACTCGCATCTCAT...TCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | GGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGTGGATTCGCTCATGCTaGATCAGGGACCGGCGTGCG | + |
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Preference number: 4 (lower is better) Translates to: GRIMAVFTSIYSCRITLQWIRSC*IRDRRA Trigger: CGCACGCCGGTCCCTGATCCAGCATGAGCGAATCCA...CTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR TCA 90 bp | GTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGTGCACCGAGTACTGGCTaGACGCCTTGCCGCAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: VELWLSLPVSTVVGLLSSAPSTG*TPCRSY Trigger: ATAGCTGCGGCAAGGCGTTCAGCCAGTACTCGGTGC...ACTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | TCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGCATGTTCTAAGTGCGGGCTTCTTCAAGTCTGTGTTTTaGTTCTCTTCCTTGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: SLLEEGCLGLVHVLSAGFFKSVF*FSSLAL Trigger: CAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAA...GAAGCCCGCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | AAAGGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCGTGCGCTGAAAGCATaGCCACACTCGCCACACACG | + |
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Preference number: 4 (lower is better) Translates to: KGRIMAVFTSIYSCRITLRALKA*PHSPHT Trigger: CGTGTGTGGCGAGTGTGGCCATGCTTTCAGCGCACG...GAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | AAGGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCCAATGGGCTTTGGACTaGGGCAGACCTTCGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: KVELWLSLPVSTVVGLLSQWALD*GRPSVL Trigger: CAGAACCGAAGGTCTGCCCCAGTCCAAAGCCCATTG...GGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR GCA 90 bp | GTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGTGTGCACGATCAGAGTTaGTTTCAGGCTGAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: VELWLSLPVSTVVGLLSSVHDQS*FQAEGF Trigger: AAAGCCTTCAGCCTGAAAGCAACTCTGATCGTGCAC...ACTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CCA 90 bp | GGTAGAATTATGGCTGTCTTTACCAGTATCTACAGTTGTAGGATTACTCTCCAGTTTGGTTCTCTTCCTTaGCTTTGCATTCTGAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: GRIMAVFTSIYSCRITLQFGSLP*LCILSG Trigger: ACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAA...CTGGAGAGTAATCCTACAACTGTAGATACTGGTAAAGACAGCCATAATTCTACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CAA 90 bp | CACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGAGTCCCCAGTGGATCCTCTGGTGTaGGATGAGCACCGAGTACTG | + |
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Preference number: 5 (lower is better) Translates to: HMLNVSPQEGHGTVTESPVDPLV*DEHRVL Trigger: CAGTACTCGGTGCTCATCCAACACCAGAGGATCCAC...TGGGGACTCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS CCA 90 bp | TTCAAGTCTGTGTTTTGGTTCTCTTCCTTGGCTTTGCATTCTGAGTaGTCACTTCCCAGGCTCTGGCTCAGCTCGGTTCCCTGTCCATCC | + |
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Preference number: 5 (lower is better) Translates to: FKSVFWFSSLALHSE*SLPRLWLSSVPCPS Trigger: GGATGGACAGGGAACCGAGCTGAGCCAGAGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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| CDS-3UTR CAA 90 bp | AATTTAACACATGCTGAATGTTTCTCCCCAGGAGGGACATGGGACTGTAACAGATACTGGCTGAACGCCTaGCCGCAGCTATTGCACTCA | + |
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Preference number: 5 (lower is better) Translates to: NLTHAECFSPGGTWDCNRYWLNA*PQLLHS Trigger: TGAGTGCAATAGCTGCGGCAAGGCGTTCAGCCAGTA...TCTGTTACAGTCCCATGTCCCTCCTGGGGAGAAACATTCAGCATGTGTTAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS CCA 90 bp | AGATTAATGGTGGCACATTCAAGTCTGTGTTTTGGTTCTCTTCCTTaGCTTTGCATTCTGAGTGGTCACTTCCCAGGCTCTGGCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: RLMVAHSSLCFGSLP*LCILSGHFPGSGSA Trigger: AGCTGAGCCAGAGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCACCATTAATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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| CDS-3UTR CAA 90 bp | ATTCTGCACATGGAACAGAACTCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGTTCTCTTCCTTGGCTTaGCATTCTGAGTGGTCACTT | + |
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Preference number: 5 (lower is better) Translates to: ILHMEQNSLLEEGCLGLVFSSLA*HSEWSL Trigger: AAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAA...CACAAGACCTAAACAGCCTTCCTCCAGGAGGGAGTTCTGTTCCATGTGCAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS-3UTR CAA 90 bp | TCCCTCCTGGAGGAAGGCTGTTTAGGTCTTGTGCATGTTCTAAGTGCGGGCTTCATTCAAGTCTGTGTTTaGGTTCTCTTCCTTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: SLLEEGCLGLVHVLSAGFIQVCV*VLFLGF Trigger: AAAGCCAAGGAAGAGAACCAAAACACAGACTTGAAT...GAAGCCCGCACTTAGAACATGCACAAGACCTAAACAGCCTTCCTCCAGGAGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229055.2 |
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| CDS TCA 72 bp | GGATCCGCCTGTGCTTGCTCAGGACGGAACTCTGGCTaGAAGCCTTTCCGCATACATGGCATACGTAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: GSACACSGRNSG*KPFRIHGIRRA Trigger: AGCCCTACGTATGCCATGTATGCGGAAAGGCTTTCAGCCAGAGTTCCGTCCTGAGCAAGCACAGGCGGATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 |
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| CDS TCA 72 bp | GTCTGTGTTTTGGTTCTCTTCCTTGGCTTTGCATTCTaGGTGGTCACTTCCCAGGCTCTGGCTCAGCTCGGT | + |
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Preference number: 6 (lower is better) Translates to: VCVLVLFLGFAF*VVTSQALAQLG Trigger: ACCGAGCTGAGCCAGAGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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| CDS CAA 72 bp | GGTGGCACATTCAAGTCTGTGTTTTGGTTCTCTTCCTaGGCTTTGCATTCTGAGTGGTCACTTCCCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: GGTFKSVFWFSS*ALHSEWSLPRL Trigger: GAGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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| CDS GCA 72 bp | CATTCAAGTCTGTGTTTTGGTTCTCTTCCTTGGCTTTaGATTCTGAGTGGTCACTTCCCAGGCTCTGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: HSSLCFGSLPWL*ILSGHFPGSGS Trigger: TGAGCCAGAGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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| CDS CCA 72 bp | GTGGCACATTCAAGTCTGTGTTTTGGTTCTCTTCCTTaGCTTTGCATTCTGAGTGGTCACTTCCCAGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: VAHSSLCFGSLP*LCILSGHFPGS Trigger: AGAGCCTGGGAAGTGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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| CDS CCA 72 bp | TCTGAGATTAATGGTGGCACATTCAAGTCTGTGTTTTaGTTCTCTTCCTTGGCTTTGCATTCTGAGTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SEINGGTFKSVF*FSSLALHSEWS Trigger: TGACCACTCAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCACCATTAATCTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048854.8 ENSMUST00000229055.2 ENSMUST00000229865.2 |
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